0s autopkgtest [20:09:09]: starting date and time: 2025-10-29 20:09:09+0000
  0s autopkgtest [20:09:09]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [20:09:09]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cpwu43wh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hmmer --apt-upgrade sepp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=hmmer/3.4+dfsg-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-1.secgroup --name adt-resolute-amd64-sepp-20251029-200908-juju-7f2275-prod-proposed-migration-environment-20-e0463890-7942-461f-80a1-6d4cef374364 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  2s Creating nova instance adt-resolute-amd64-sepp-20251029-200908-juju-7f2275-prod-proposed-migration-environment-20-e0463890-7942-461f-80a1-6d4cef374364 from image adt/ubuntu-resolute-amd64-server-20251029.img (UUID 5761d511-8185-4ff5-8689-0f6c7cb11ec6)...
 59s autopkgtest [20:10:08]: testbed dpkg architecture: amd64
 59s autopkgtest [20:10:08]: testbed apt version: 3.1.11
 59s autopkgtest [20:10:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 59s autopkgtest [20:10:08]: testbed release detected to be: None
 60s autopkgtest [20:10:09]: updating testbed package index (apt update)
 60s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB]
 61s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 61s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 61s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB]
 61s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3669 kB]
 62s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB]
 62s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B]
 62s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB]
 62s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [290 kB]
 62s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5760 B]
 62s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [4212 B]
 62s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.6 kB]
 62s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B]
 62s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [2594 kB]
 63s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [1142 kB]
 63s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [72.3 kB]
 63s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [19.9 kB]
 63s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [47.3 kB]
 63s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [2068 B]
 64s Fetched 8434 kB in 3s (3281 kB/s)
 65s Reading package lists...
 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 68s Reading package lists...
 68s Reading package lists...
 68s Building dependency tree...
 68s Reading state information...
 68s Calculating upgrade...
 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 69s autopkgtest [20:10:18]: upgrading testbed (apt dist-upgrade and autopurge)
 69s Reading package lists...
 69s Building dependency tree...
 69s Reading state information...
 69s Calculating upgrade...
 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 70s Reading package lists...
 70s Building dependency tree...
 70s Reading state information...
 70s Solving dependencies...
 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 73s autopkgtest [20:10:22]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025
 73s autopkgtest [20:10:22]: @@@@@@@@@@@@@@@@@@@@ apt-source sepp
 76s Get:1 http://ftpmaster.internal/ubuntu resolute/universe sepp 4.5.5+dfsg-1 (dsc) [2129 B]
 76s Get:2 http://ftpmaster.internal/ubuntu resolute/universe sepp 4.5.5+dfsg-1 (tar) [4312 kB]
 76s Get:3 http://ftpmaster.internal/ubuntu resolute/universe sepp 4.5.5+dfsg-1 (diff) [12.5 kB]
 76s gpgv: Signature made Mon Sep 30 18:54:31 2024 UTC
 76s gpgv:                using RSA key 33CB284313E90BD27DCB4523600316A6DC277476
 76s gpgv: Can't check signature: No public key
 76s dpkg-source: warning: cannot verify inline signature for ./sepp_4.5.5+dfsg-1.dsc: no acceptable signature found
 77s autopkgtest [20:10:26]: testing package sepp version 4.5.5+dfsg-1
 77s autopkgtest [20:10:26]: build not needed
 79s autopkgtest [20:10:28]: test run-build-tests: preparing testbed
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 80s Solving dependencies...
 80s The following NEW packages will be installed:
 80s   adwaita-icon-theme at-spi2-common ca-certificates-java
 80s   dconf-gsettings-backend dconf-service default-jre default-jre-headless
 80s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 80s   gtk-update-icon-cache hicolor-icon-theme hmmer java-common junit4
 80s   libapache-pom-java libasound2-data libasound2t64 libatk-bridge2.0-0t64
 80s   libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data
 80s   libavahi-common3 libcairo-gobject2 libcairo2 libcolord2
 80s   libcommons-beanutils-java libcommons-collections3-java
 80s   libcommons-collections4-java libcommons-lang-java libcommons-lang3-java
 80s   libcommons-logging-java libcommons-parent-java libcups2t64 libdatrie1
 80s   libdconf1 libdeflate0 libdivsufsort3 libdrm-amdgpu1 libdrm-intel1 libepoxy0
 80s   libezmorph-java libfontconfig1 libgbm1 libgdk-pixbuf-2.0-0
 80s   libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglvnd0
 80s   libglx-mesa0 libglx0 libgomp1 libgoogle-gson-java libgraphite2-3 libgsl28
 80s   libgslcblas0 libgtk-3-0t64 libgtk-3-common libhamcrest-java libharfbuzz0b
 80s   libjaxen-java libjbig0 libjenkins-json-java libjpeg-turbo8 libjpeg8
 80s   libjson-java liblcms2-2 liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7
 80s   libncbi-vdb3 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0
 80s   libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpixman-1-0 libsharpyuv0
 80s   libslf4j-java libthai-data libthai0 libtiff6 libvulkan1 libwayland-client0
 80s   libwayland-cursor0 libwayland-egl1 libwebp7 libx11-xcb1 libxcb-dri3-0
 80s   libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0
 80s   libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1
 80s   libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
 80s   libxml-commons-resolver1.1-java libxom-java libxrandr2 libxrender1
 80s   libxshmfence1 libxtst6 libxxf86vm1 mesa-libgallium ncbi-blast+ ncbi-data
 80s   ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless pplacer
 80s   python3-dendropy sepp x11-common
 80s 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded.
 80s Need to get 107 MB of archives.
 80s After this operation, 444 MB of additional disk space will be used.
 80s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B]
 80s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB]
 80s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
 80s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB]
 80s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
 80s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
 80s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
 80s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
 81s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
 81s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [153 kB]
 81s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 gtk-update-icon-cache amd64 4.20.2+ds-1 [54.6 kB]
 81s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 hicolor-icon-theme all 0.18-2 [13.3 kB]
 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 adwaita-icon-theme all 49.0-1 [581 kB]
 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 at-spi2-common all 2.57.1-1 [9432 B]
 81s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 ca-certificates-java all 20240118 [11.6 kB]
 81s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libdconf1 amd64 0.49.0-1 [40.2 kB]
 81s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-service amd64 0.49.0-1 [27.7 kB]
 81s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-gsettings-backend amd64 0.49.0-1 [22.2 kB]
 81s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 java-common all 0.76 [6852 B]
 81s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
 81s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libnspr4 amd64 2:4.36-1ubuntu2 [118 kB]
 81s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libnss3 amd64 2:3.114-1 [1483 kB]
 81s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcsclite1 amd64 2.3.3-1 [24.0 kB]
 81s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 openjdk-21-jre-headless amd64 21.0.9+10-1 [46.5 MB]
 84s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B]
 84s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk1.0-0t64 amd64 2.57.1-1 [56.3 kB]
 84s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
 84s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libatspi2.0-0t64 amd64 2.57.1-1 [85.3 kB]
 84s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk-bridge2.0-0t64 amd64 2.57.1-1 [66.7 kB]
 84s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
 84s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
 84s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB]
 84s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB]
 84s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
 84s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB]
 84s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B]
 84s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
 84s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB]
 84s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo-gobject2 amd64 1.18.4-1build1 [128 kB]
 84s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolord2 amd64 1.4.7-3build1 [149 kB]
 84s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common-data amd64 0.8-16ubuntu3 [31.1 kB]
 84s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common3 amd64 0.8-16ubuntu3 [25.3 kB]
 84s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-client3 amd64 0.8-16ubuntu3 [28.8 kB]
 84s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libcups2t64 amd64 2.4.12-0ubuntu3 [272 kB]
 84s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB]
 84s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
 84s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB]
 84s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.15.0-2.3ubuntu1 [180 kB]
 84s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
 84s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.13-4 [19.3 kB]
 84s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
 84s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB]
 84s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [52.5 kB]
 84s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [29.0 kB]
 84s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-client0 amd64 1.24.0-1build1 [29.6 kB]
 84s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-cursor0 amd64 1.24.0-1build1 [11.1 kB]
 84s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-egl1 amd64 1.24.0-1build1 [6474 B]
 84s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B]
 84s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB]
 84s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcursor1 amd64 1:1.2.3-1 [23.1 kB]
 84s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B]
 84s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B]
 84s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB]
 84s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB]
 84s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-0t64 amd64 3.24.50-1ubuntu2 [3263 kB]
 84s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-1build2 [65.1 kB]
 84s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B]
 84s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2build1 [8036 B]
 84s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2build1 [27.6 kB]
 84s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2build1 [6446 B]
 84s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2build1 [11.1 kB]
 84s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
 84s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.127-1ubuntu1 [23.6 kB]
 84s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB]
 85s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.127-1ubuntu1 [69.2 kB]
 85s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2build1 [19.7 kB]
 85s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2build1 [10.1 kB]
 85s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B]
 85s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.2.3-1ubuntu1 [11.1 MB]
 85s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.2.3-1ubuntu1 [34.0 kB]
 85s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.321.0-1 [154 kB]
 85s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.2.3-1ubuntu1 [36.9 kB]
 85s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.2.3-1ubuntu1 [110 kB]
 85s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-1build2 [40.3 kB]
 85s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-1build2 [101 kB]
 85s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2-data all 1.2.14-1ubuntu1 [21.2 kB]
 85s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2t64 amd64 1.2.14-1ubuntu1 [407 kB]
 85s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB]
 85s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
 85s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtst6 amd64 2:1.2.5-1 [13.0 kB]
 85s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 openjdk-21-jre amd64 21.0.9+10-1 [225 kB]
 85s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 default-jre amd64 2:1.21-76 [918 B]
 85s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhamcrest-java all 2.2-2 [117 kB]
 85s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 junit4 all 4.13.2-5 [348 kB]
 85s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libapache-pom-java all 33-2 [5874 B]
 85s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-collections3-java all 3.2.2-3 [526 kB]
 85s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-parent-java all 56-1 [10.7 kB]
 85s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
 85s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-beanutils-java all 1.10.1-1.1 [224 kB]
 85s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-collections4-java all 4.4-2 [670 kB]
 85s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-lang-java all 2.6-11 [271 kB]
 85s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcommons-lang3-java all 3.17.0-1 [603 kB]
 86s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdivsufsort3 amd64 2.0.1-6 [46.5 kB]
 86s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libezmorph-java all 1.0.6-4 [76.0 kB]
 86s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB]
 86s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgoogle-gson-java all 2.10.1-1 [252 kB]
 86s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgslcblas0 amd64 2.8+dfsg-5.1ubuntu1 [133 kB]
 86s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgsl28 amd64 2.8+dfsg-5.1ubuntu1 [1104 kB]
 87s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjaxen-java all 1.1.6-5 [213 kB]
 87s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjenkins-json-java all 2.4-jenkins-8+dfsg-1 [209 kB]
 87s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libslf4j-java all 1.7.32-2 [141 kB]
 87s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxml-commons-external-java all 1.4.01-6 [240 kB]
 87s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB]
 87s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces2-java all 2.12.2-1 [1430 kB]
 87s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxom-java all 1.3.9-1 [174 kB]
 87s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjson-java all 3.1.0+dfsg-2 [141 kB]
 87s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedcrypto16 amd64 3.6.2-3ubuntu1 [276 kB]
 87s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedx509-7 amd64 3.6.2-3ubuntu1 [37.1 kB]
 87s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedtls21 amd64 3.6.2-3ubuntu1 [126 kB]
 87s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB]
 87s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1376 kB]
 87s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB]
 88s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB]
 91s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 pplacer amd64 1.1~alpha19-8build1 [3554 kB]
 91s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dendropy all 4.6.1-2 [278 kB]
 91s Get:126 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 hmmer amd64 3.4+dfsg-3 [1142 kB]
 91s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 sepp amd64 4.5.5+dfsg-1 [164 kB]
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100s Setting up libdrm-amdgpu1:amd64 (2.4.127-1ubuntu1) ...
100s Setting up libwayland-client0:amd64 (1.24.0-1build1) ...
100s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
100s Setting up mesa-libgallium:amd64 (25.2.3-1ubuntu1) ...
100s Setting up libatk1.0-0t64:amd64 (2.57.1-1) ...
100s Setting up libgbm1:amd64 (25.2.3-1ubuntu1) ...
100s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ...
100s Setting up libxtst6:amd64 (2:1.2.5-1) ...
100s Setting up libxcursor1:amd64 (1:1.2.3-1) ...
100s Setting up libgl1-mesa-dri:amd64 (25.2.3-1ubuntu1) ...
100s Setting up libcommons-parent-java (56-1) ...
100s Setting up libavahi-common3:amd64 (0.8-16ubuntu3) ...
100s Setting up pplacer (1.1~alpha19-8build1) ...
100s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
100s Setting up dconf-service (0.49.0-1) ...
100s Setting up libnss3:amd64 (2:3.114-1) ...
100s Setting up libxom-java (1.3.9-1) ...
100s Setting up libcommons-lang-java (2.6-11) ...
100s Setting up libthai0:amd64 (0.1.29-2build1) ...
100s Setting up libmbedx509-7:amd64 (3.6.2-3ubuntu1) ...
100s Setting up libcommons-collections4-java (4.4-2) ...
100s Setting up libcommons-lang3-java (3.17.0-1) ...
100s Setting up libmbedtls21:amd64 (3.6.2-3ubuntu1) ...
100s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ...
100s Setting up libwayland-cursor0:amd64 (1.24.0-1build1) ...
100s Setting up hmmer (3.4+dfsg-3) ...
100s Setting up libcommons-beanutils-java (1.10.1-1.1) ...
100s Setting up libgdk-pixbuf-2.0-0:amd64 (2.44.4+dfsg-1) ...
100s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ...
100s Setting up libjenkins-json-java (2.4-jenkins-8+dfsg-1) ...
100s Setting up libavahi-client3:amd64 (0.8-16ubuntu3) ...
100s Setting up libatk-bridge2.0-0t64:amd64 (2.57.1-1) ...
100s Setting up gtk-update-icon-cache (4.20.2+ds-1) ...
100s Setting up fontconfig (2.15.0-2.3ubuntu1) ...
102s Regenerating fonts cache... done.
102s Setting up libglx-mesa0:amd64 (25.2.3-1ubuntu1) ...
102s Setting up openjdk-21-jre-headless:amd64 (21.0.9+10-1) ...
102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
102s Setting up libglx0:amd64 (1.7.0-1build2) ...
102s Setting up dconf-gsettings-backend:amd64 (0.49.0-1) ...
102s Setting up libpango-1.0-0:amd64 (1.56.3-2) ...
102s Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ...
102s Setting up libcairo2:amd64 (1.18.4-1build1) ...
102s Setting up ncbi-blast+ (2.16.0+ds-7) ...
102s Setting up libgl1:amd64 (1.7.0-1build2) ...
102s Setting up adwaita-icon-theme (49.0-1) ...
102s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
102s Setting up libcairo-gobject2:amd64 (1.18.4-1build1) ...
102s Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ...
102s Setting up libcups2t64:amd64 (2.4.12-0ubuntu3) ...
102s Setting up libgtk-3-common (3.24.50-1ubuntu2) ...
102s Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ...
102s Processing triggers for libc-bin (2.42-0ubuntu3) ...
102s Processing triggers for man-db (2.13.1-1) ...
103s Processing triggers for libglib2.0-0t64:amd64 (2.86.1-1) ...
104s Setting up libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ...
104s Processing triggers for ca-certificates-java (20240118) ...
104s Adding debian:ACCVRAIZ1.pem
104s Adding debian:AC_RAIZ_FNMT-RCM.pem
104s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
104s Adding debian:ANF_Secure_Server_Root_CA.pem
104s Adding debian:Actalis_Authentication_Root_CA.pem
104s Adding debian:AffirmTrust_Commercial.pem
104s Adding debian:AffirmTrust_Networking.pem
104s Adding debian:AffirmTrust_Premium.pem
104s Adding debian:AffirmTrust_Premium_ECC.pem
104s Adding debian:Amazon_Root_CA_1.pem
104s Adding debian:Amazon_Root_CA_2.pem
104s Adding debian:Amazon_Root_CA_3.pem
104s Adding debian:Amazon_Root_CA_4.pem
104s Adding debian:Atos_TrustedRoot_2011.pem
104s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
104s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
104s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
104s Adding debian:BJCA_Global_Root_CA1.pem
104s Adding debian:BJCA_Global_Root_CA2.pem
104s Adding debian:Baltimore_CyberTrust_Root.pem
104s Adding debian:Buypass_Class_2_Root_CA.pem
104s Adding debian:Buypass_Class_3_Root_CA.pem
104s Adding debian:CA_Disig_Root_R2.pem
104s Adding debian:CFCA_EV_ROOT.pem
104s Adding debian:COMODO_Certification_Authority.pem
104s Adding debian:COMODO_ECC_Certification_Authority.pem
104s Adding debian:COMODO_RSA_Certification_Authority.pem
104s Adding debian:Certainly_Root_E1.pem
104s Adding debian:Certainly_Root_R1.pem
104s Adding debian:Certigna.pem
104s Adding debian:Certigna_Root_CA.pem
104s Adding debian:Certum_EC-384_CA.pem
104s Adding debian:Certum_Trusted_Network_CA.pem
104s Adding debian:Certum_Trusted_Network_CA_2.pem
104s Adding debian:Certum_Trusted_Root_CA.pem
104s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
104s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
104s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
104s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
104s Adding debian:Comodo_AAA_Services_root.pem
104s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
104s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem
104s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
104s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem
104s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
104s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
104s Adding debian:DigiCert_Assured_ID_Root_CA.pem
104s Adding debian:DigiCert_Assured_ID_Root_G2.pem
104s Adding debian:DigiCert_Assured_ID_Root_G3.pem
104s Adding debian:DigiCert_Global_Root_CA.pem
104s Adding debian:DigiCert_Global_Root_G2.pem
104s Adding debian:DigiCert_Global_Root_G3.pem
104s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
104s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
104s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
104s Adding debian:DigiCert_Trusted_Root_G4.pem
104s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
104s Adding debian:Entrust_Root_Certification_Authority.pem
104s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
104s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
104s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
104s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
104s Adding debian:GLOBALTRUST_2020.pem
104s Adding debian:GTS_Root_R1.pem
104s Adding debian:GTS_Root_R2.pem
104s Adding debian:GTS_Root_R3.pem
104s Adding debian:GTS_Root_R4.pem
104s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
104s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
104s Adding debian:GlobalSign_Root_CA.pem
104s Adding debian:GlobalSign_Root_CA_-_R3.pem
104s Adding debian:GlobalSign_Root_CA_-_R6.pem
104s Adding debian:GlobalSign_Root_E46.pem
104s Adding debian:GlobalSign_Root_R46.pem
104s Adding debian:Go_Daddy_Class_2_CA.pem
104s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
104s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
104s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
104s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
104s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
104s Adding debian:HiPKI_Root_CA_-_G1.pem
104s Adding debian:Hongkong_Post_Root_CA_3.pem
104s Adding debian:ISRG_Root_X1.pem
104s Adding debian:ISRG_Root_X2.pem
104s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
104s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
104s Adding debian:Izenpe.com.pem
104s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
104s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
104s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
104s Adding debian:NAVER_Global_Root_Certification_Authority.pem
104s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
104s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
104s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
104s Adding debian:QuoVadis_Root_CA_1_G3.pem
104s Adding debian:QuoVadis_Root_CA_2.pem
104s Adding debian:QuoVadis_Root_CA_2_G3.pem
104s Adding debian:QuoVadis_Root_CA_3.pem
104s Adding debian:QuoVadis_Root_CA_3_G3.pem
104s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
104s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
104s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
104s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
104s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
104s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
104s Adding debian:SZAFIR_ROOT_CA2.pem
104s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
104s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
104s Adding debian:SecureSign_Root_CA12.pem
104s Adding debian:SecureSign_Root_CA14.pem
104s Adding debian:SecureSign_Root_CA15.pem
104s Adding debian:SecureTrust_CA.pem
104s Adding debian:Secure_Global_CA.pem
104s Adding debian:Security_Communication_ECC_RootCA1.pem
104s Adding debian:Security_Communication_RootCA2.pem
104s Adding debian:Starfield_Class_2_CA.pem
104s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
104s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
104s Adding debian:SwissSign_Gold_CA_-_G2.pem
104s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
104s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
104s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
104s Adding debian:TWCA_CYBER_Root_CA.pem
104s Adding debian:TWCA_Global_Root_CA.pem
104s Adding debian:TWCA_Root_Certification_Authority.pem
104s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
104s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
104s Adding debian:TeliaSonera_Root_CA_v1.pem
104s Adding debian:Telia_Root_CA_v2.pem
105s Adding debian:TrustAsia_Global_Root_CA_G3.pem
105s Adding debian:TrustAsia_Global_Root_CA_G4.pem
105s Adding debian:Trustwave_Global_Certification_Authority.pem
105s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
105s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
105s Adding debian:TunTrust_Root_CA.pem
105s Adding debian:UCA_Extended_Validation_Root.pem
105s Adding debian:UCA_Global_G2_Root.pem
105s Adding debian:USERTrust_ECC_Certification_Authority.pem
105s Adding debian:USERTrust_RSA_Certification_Authority.pem
105s Adding debian:XRamp_Global_CA_Root.pem
105s Adding debian:certSIGN_ROOT_CA.pem
105s Adding debian:certSIGN_Root_CA_G2.pem
105s Adding debian:e-Szigno_Root_CA_2017.pem
105s Adding debian:ePKI_Root_Certification_Authority.pem
105s Adding debian:emSign_ECC_Root_CA_-_C3.pem
105s Adding debian:emSign_ECC_Root_CA_-_G3.pem
105s Adding debian:emSign_Root_CA_-_C1.pem
105s Adding debian:emSign_Root_CA_-_G1.pem
105s Adding debian:vTrus_ECC_Root_CA.pem
105s Adding debian:vTrus_Root_CA.pem
105s done.
105s Setting up junit4 (4.13.2-5) ...
105s Setting up default-jre-headless (2:1.21-76) ...
105s Setting up openjdk-21-jre:amd64 (21.0.9+10-1) ...
105s Setting up libjson-java (3.1.0+dfsg-2) ...
105s Setting up default-jre (2:1.21-76) ...
105s Setting up sepp (4.5.5+dfsg-1) ...
105s Processing triggers for libc-bin (2.42-0ubuntu3) ...
106s autopkgtest [20:10:55]: test run-build-tests: [-----------------------
106s testAlignmentReadFasta (testAlignment.Test.testAlignmentReadFasta) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testAlignment.py:38: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>
106s   alg.read_filepath(get_data_path("mock/pyrg/sate.fasta"))
106s ResourceWarning: Enable tracemalloc to get the object allocation traceback
106s ok
106s testExtendedAlignment (testAlignment.Test.testExtendedAlignment) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testAlignment.py:107: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/simulated/test.fasta' mode='r' encoding='UTF-8'>
106s   alg.read_filepath(get_data_path("simulated/test.fasta"))
106s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s /tmp/tmp.H8zxaNp5nO/test/unittest/testAlignment.py:112: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'>
107s   frg.read_filepath(get_data_path("simulated/test.fas"))
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s /tmp/tmp.H8zxaNp5nO/test/unittest/testAlignment.py:130: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph0gso7xk' mode='r' encoding='UTF-8'>
107s   tmp = MutableAlignment().read_filepath(self.fp_dummy1)
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s /tmp/tmp.H8zxaNp5nO/test/unittest/testAlignment.py:133: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuye0fs4m' mode='r' encoding='UTF-8'>
107s   tmp = MutableAlignment().read_filepath(self.fp_dummy2)
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph0gso7xk' mode='r' encoding='UTF-8'>
107s   self.read_filepath(base_alignment, "FASTA")
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/cp1.extended.sto' mode='r' encoding='UTF-8'>
107s   ext.read_extended_alignment(path)
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s [20:10:56] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/cp1.extended.sto) into base alignment (/tmp/tmph0gso7xk).
107s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuye0fs4m' mode='r' encoding='UTF-8'>
107s   self.read_filepath(base_alignment, "FASTA")
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/cp2.extended.sto' mode='r' encoding='UTF-8'>
107s   ext.read_extended_alignment(path)
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s [20:10:56] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/cp2.extended.sto) into base alignment (/tmp/tmpuye0fs4m).
107s ok
107s testReadOnlySubAlignment (testAlignment.Test.testReadOnlySubAlignment) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testAlignment.py:46: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>
107s   alg.read_filepath(get_data_path("mock/pyrg/sate.fasta"))
107s ResourceWarning: Enable tracemalloc to get the object allocation traceback
107s ok
107s test_make_checkpoints (testCheckPoint.Test.test_make_checkpoints) ... [20:10:56] config.py (line 371):     INFO: Seed number: 297834
107s [20:10:56] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
107s [20:10:56] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
107s [20:10:56] algorithm.py (line 157):     INFO: All options: Namespace(pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False', elim='10000', filters='True'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), exhaustive=Namespace(strategy='centroid', minsubsetsize='2', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), alignment_size=None, placement_size=20, max_chunk_size=20000, distance=1, maxDiam=None, decomp_strategy='normal', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpm6xo18mi', config_file=None, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468db750>, checkpoint_interval=5, seed=297834)
107s [20:10:56] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
107s [20:10:56] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
107s [20:10:56] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
107s [20:10:56] algorithm.py (line 298):     INFO: Tree has 508 leaves
107s [20:10:56] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 20 placement: 20
107s [20:10:56] exhaustive.py (line 352):     INFO: Breaking into 33 placement subsets.
107s [20:10:56] exhaustive.py (line 399):     INFO: Breaking into 33 alignment subsets.
107s [20:10:56] filemgr.py (line 129):     INFO: Root temp directory built: /tmp/sepp/output.3m0m_v1g
107s [20:10:56] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
108s [20:10:57] checkpointing.py (line 121):     INFO: Checkpoint every 5 seconds
108s [20:10:57] checkpointing.py (line 49):     INFO: Checkpoint is being updated: /tmp/sepp/output.3m0m_v1g/checkpoints/dump83431_46
108s /usr/lib/python3/dist-packages/sepp/checkpointing.py:50: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4inpgwkm' mode='r' encoding='UTF-8'>
108s   old_tmp_file = open(checkpoint_manager.checkpoint_path).readlines()
108s ResourceWarning: Enable tracemalloc to get the object allocation traceback
108s [20:10:57] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.qkh6btox.fasta
108s [20:10:57] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ctj_vrws.fasta
108s [20:10:57] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.9r5kzg11.fasta
108s [20:10:57] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.vzcueh8_.fasta
108s [20:10:57] checkpointing.py (line 68):     INFO: Checkpoint Saved to: /tmp/sepp/output.3m0m_v1g/checkpoints/dump83431_46 and linked in /tmp/tmp4inpgwkm.
108s /usr/lib/python3/dist-packages/sepp/checkpointing.py:75: DeprecationWarning: setDaemon() is deprecated, set the daemon attribute instead
108s   checkpoint_manager.timer.setDaemon(True)
108s [20:10:57] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.wf8xf5po.fasta
108s [20:10:57] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.w56dq19r.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.zkqm16k8.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.3y7sofcr.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.2bt5f8y5.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.trc742zi.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.x2uoxlis.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.8p1ir2d4.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.j4ncic3n.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.ic6g5l2w.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.mqf3lqb0.fasta
109s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.v9c9i1d0.fasta
110s [20:10:58] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.lwvuz3_i.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.y88skf8r.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_19/A_19_0/hmmbuild.input.9ybyrwi3.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input._zvg6b83.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_20/A_20_0/hmmbuild.input.tod8e0_t.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.input.8apinpvs.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_22/A_22_0/hmmbuild.input.f1by3ri1.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_23/A_23_0/hmmbuild.input.16x9_2t2.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_24/A_24_0/hmmbuild.input.dumbkbrq.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_25/A_25_0/hmmbuild.input.ahp1izbh.fasta
110s [20:10:59] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_26/A_26_0/hmmbuild.input.v2bbeqiv.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.input.j7ls1lnb.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_28/A_28_0/hmmbuild.input.hk11p75p.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_30/A_30_0/hmmbuild.input.5n60_luw.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_29/A_29_0/hmmbuild.input.a1_vmdf9.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_31/A_31_0/hmmbuild.input.kb1en93z.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y4tz8nkq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.i150d8sr
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y4tz8nkq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmsearch.results.2cmjqr52
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.vb3vxo88, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.dzt89asq
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_32/A_32_0/hmmbuild.input.wdlwsjrh.fasta
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.vb3vxo88, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmsearch.results.svmcjdkn
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.rmdjkm7c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmsearch.results.d8bkerc8
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.rmdjkm7c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.0313h4jg
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.ji19gys7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.5wy179_k
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.ji19gys7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_1/hmmsearch.results.nl3nwjwy
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.b0o7c9ce, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.nvgyr599
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.b0o7c9ce, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmsearch.results.q1r1nlx0
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.h0iv0892, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.2eg3c42n
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.3o2pfum4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.8ix0s2xx
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.h0iv0892, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmsearch.results.xndzz6r8
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.3o2pfum4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_1/hmmsearch.results.43xt6y6s
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7r46brjf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.211l3bf3
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7r46brjf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_1/hmmsearch.results.bup8k8wj
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.9ob9u7ha, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.t4i929oj
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.9ob9u7ha, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/FC_9_0_1/hmmsearch.results.x02efx1l
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.5s6s0l89, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/FC_8_0_1/hmmsearch.results.2cqww0o6
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.5s6s0l89, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.wy1l8z4g
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.nk902c4r, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.8gbj848g
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.nk902c4r, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_1/hmmsearch.results.w73i61t3
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.1v82lrdr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.2hjjyrhf
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.1v82lrdr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/FC_10_0_1/hmmsearch.results.wiwvagrd
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.wzucvqgj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.u0e0croi
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.wzucvqgj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmsearch.results.fxrfrz5e
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.qnp08gaq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.o30hevfp
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hece1uiz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.dfgv8qv4
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.qnp08gaq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmsearch.results.jdmfxb_j
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hece1uiz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_1/hmmsearch.results.a_tda73t
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.rkfphyfm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.pyrlaoec
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.rkfphyfm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_1/hmmsearch.results.4p0y_7mi
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.m62zirpb, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.09dods8n
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.m62zirpb, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/FC_16_0_1/hmmsearch.results.r4mx2lhe
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.caxjs555, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.mcalrrt3
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.caxjs555, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/FC_17_0_1/hmmsearch.results.xnww4lro
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_19/A_19_0/hmmbuild.model.chwny3mh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_19/A_19_0/FC_19_0_1/hmmsearch.results.wiyynre5
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_19/A_19_0/hmmbuild.model.chwny3mh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_19/A_19_0/FC_19_0_0/hmmsearch.results.jukvmeac
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.po78xdnj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.k2037yp8
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.po78xdnj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/FC_18_0_1/hmmsearch.results.2a6z0kpy
111s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_20/A_20_0/hmmbuild.model.dvau52qs, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_20/A_20_0/FC_20_0_0/hmmsearch.results.2sywa9ut
112s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_20/A_20_0/hmmbuild.model.dvau52qs, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_20/A_20_0/FC_20_0_1/hmmsearch.results.mrd9l59a
112s [20:11:00] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.model.6amxspw0, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/FC_21_0_0/hmmsearch.results.fzqik2v5
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.model.6amxspw0, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/FC_21_0_1/hmmsearch.results.vxq_rhx1
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_22/A_22_0/hmmbuild.model.nk_dkcz1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_22/A_22_0/FC_22_0_0/hmmsearch.results.82pi22pr
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_23/A_23_0/hmmbuild.model.ot35mg8a, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_23/A_23_0/FC_23_0_0/hmmsearch.results.ersu54n5
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_22/A_22_0/hmmbuild.model.nk_dkcz1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_22/A_22_0/FC_22_0_1/hmmsearch.results.f4neo2yv
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_23/A_23_0/hmmbuild.model.ot35mg8a, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_23/A_23_0/FC_23_0_1/hmmsearch.results.oug6yhdz
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_24/A_24_0/hmmbuild.model.e94jpj71, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_24/A_24_0/FC_24_0_0/hmmsearch.results.3u8idpz0
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_24/A_24_0/hmmbuild.model.e94jpj71, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_24/A_24_0/FC_24_0_1/hmmsearch.results.kq42olul
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_25/A_25_0/hmmbuild.model.baqhoq99, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_25/A_25_0/FC_25_0_0/hmmsearch.results.y5c6h02l
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_25/A_25_0/hmmbuild.model.baqhoq99, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_25/A_25_0/FC_25_0_1/hmmsearch.results.1icxeb84
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_26/A_26_0/hmmbuild.model.2dt0uco1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_26/A_26_0/FC_26_0_0/hmmsearch.results.dn9qovnj
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.model.ce6bvm8v, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/FC_27_0_0/hmmsearch.results.l1y5f8yy
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_26/A_26_0/hmmbuild.model.2dt0uco1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_26/A_26_0/FC_26_0_1/hmmsearch.results.olb_y_dp
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.model.ce6bvm8v, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/FC_27_0_1/hmmsearch.results.ndwbu49n
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_28/A_28_0/hmmbuild.model.lo1qzm2s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_28/A_28_0/FC_28_0_0/hmmsearch.results.hiespht1
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_28/A_28_0/hmmbuild.model.lo1qzm2s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_28/A_28_0/FC_28_0_1/hmmsearch.results.hw7pb_nk
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_30/A_30_0/hmmbuild.model.vx3kgepw, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_30/A_30_0/FC_30_0_0/hmmsearch.results.oif7ln2t
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_30/A_30_0/hmmbuild.model.vx3kgepw, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_30/A_30_0/FC_30_0_1/hmmsearch.results.med40hlb
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_29/A_29_0/hmmbuild.model.n4howpq8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_29/A_29_0/FC_29_0_0/hmmsearch.results.oy1xntxm
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_29/A_29_0/hmmbuild.model.n4howpq8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_29/A_29_0/FC_29_0_1/hmmsearch.results.sn0m6l_9
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_31/A_31_0/hmmbuild.model.7tcfug01, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_31/A_31_0/FC_31_0_0/hmmsearch.results.m7px3vof
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_31/A_31_0/hmmbuild.model.7tcfug01, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_31/A_31_0/FC_31_0_1/hmmsearch.results.jm5z1hi5
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_32/A_32_0/hmmbuild.model.qvbd1blo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0wlmqk0eo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_32/A_32_0/FC_32_0_0/hmmsearch.results.2kaufsjo
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_32/A_32_0/hmmbuild.model.qvbd1blo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1m5iffeym.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_32/A_32_0/FC_32_0_1/hmmsearch.results.f6vdfr4a
112s [20:11:01] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ctj_vrws.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.rmdjkm7c, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.74cmlbk6.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.9r5kzg11.fasta
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.ji19gys7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.844ykwhi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.vzcueh8_.fasta
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.qkh6btox.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.9r5kzg11.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.l_x_r8vj' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.l_x_r8vj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.9r5kzg11.fasta).
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.h0iv0892, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag._f7zrubc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.w56dq19r.fasta
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.vzcueh8_.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.b0o7c9ce, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.yjumpe55.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.wf8xf5po.fasta
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.9al6ticf' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.9al6ticf) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.vzcueh8_.fasta).
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7r46brjf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.897qar5q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.3y7sofcr.fasta
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7r46brjf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_1/hmmalign.frag.msttskrb.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.3y7sofcr.fasta
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.w56dq19r.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.b75resxn' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.b75resxn) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.w56dq19r.fasta).
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.3o2pfum4, fragments:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.wgjj1zlr.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.zkqm16k8.fasta
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.wf8xf5po.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.2l4kambb' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.2l4kambb) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.wf8xf5po.fasta).
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.model.6amxspw0, fragments:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/FC_21_0_0/hmmalign.frag.pcsivsry.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.input.8apinpvs.fasta
112s [20:11:01] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.model.ce6bvm8v, fragments:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/FC_27_0_0/hmmalign.frag.i5z1gbm5.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.input.j7ls1lnb.fasta
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.3y7sofcr.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.e9w6wny3' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.e9w6wny3) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.3y7sofcr.fasta).
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_1/hmmalign.results.xfdmx9sm' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_1/hmmalign.results.xfdmx9sm) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.3y7sofcr.fasta).
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.trc742zi.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.2bt5f8y5.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.8p1ir2d4.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.x2uoxlis.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.j4ncic3n.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.2bg_2oft.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.0wgpubt3.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.sjonfros.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.sjonfros.jplace
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.ic6g5l2w.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.v9c9i1d0.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.mqf3lqb0.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.lwvuz3_i.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.y88skf8r.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.backbone.85q25az8.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.tree.qckcgp6r.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.uw84rrrl.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.uw84rrrl.jplace
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input._zvg6b83.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_19.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_19/A_19_0/hmmbuild.input.9ybyrwi3.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_20.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_20/A_20_0/hmmbuild.input.tod8e0_t.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.zkqm16k8.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.12i78mta' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.12i78mta) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.zkqm16k8.fasta).
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_22.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_22/A_22_0/hmmbuild.input.f1by3ri1.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_23.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_23/A_23_0/hmmbuild.input.16x9_2t2.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_24.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_24/A_24_0/hmmbuild.input.dumbkbrq.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_25.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_25/A_25_0/hmmbuild.input.ahp1izbh.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_26.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_26/A_26_0/hmmbuild.input.v2bbeqiv.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_21.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.input.8apinpvs.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/FC_21_0_0/hmmalign.results.rn2s6oa8' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/FC_21_0_0/hmmalign.results.rn2s6oa8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_21/A_21_0/hmmbuild.input.8apinpvs.fasta).
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_28.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_28/A_28_0/hmmbuild.input.hk11p75p.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_29.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_29/A_29_0/hmmbuild.input.a1_vmdf9.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_30.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_30/A_30_0/hmmbuild.input.5n60_luw.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_31.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_31/A_31_0/hmmbuild.input.kb1en93z.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_32.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_32/A_32_0/hmmbuild.input.wdlwsjrh.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_27.
112s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.input.j7ls1lnb.fasta' mode='r' encoding='UTF-8'>
112s   self.read_filepath(base_alignment, "FASTA")
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/FC_27_0_0/hmmalign.results.4zbs50xx' mode='r' encoding='UTF-8'>
112s   ext.read_extended_alignment(path)
112s ResourceWarning: Enable tracemalloc to get the object allocation traceback
112s [20:11:01] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/FC_27_0_0/hmmalign.results.4zbs50xx) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_27/A_27_0/hmmbuild.input.j7ls1lnb.fasta).
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.2l7b8wzi.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.zxdja7dr.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.k9qwpk5z.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.k9qwpk5z.jplace
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone.4_72i12s.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.hqf5h2b8.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.soaub2uq.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.soaub2uq.jplace
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.backbone.auil_xm3.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.tree.16_29ecq.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.ka3u4is2.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.ka3u4is2.jplace
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.backbone.y698cwk1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.tree.3s1_p9k1.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.1.lzgmfa04.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.1.lzgmfa04.jplace
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.backbone.8t8srfkd.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.tree.y36zid4o.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.bym2odum.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.bym2odum.jplace
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_21/pplacer.backbone.ujs9u8xu.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_21/pplacer.tree.3t0tq9be.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_21/pplacer.extended.0.95xoc0ve.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_21/pplacer.extended.0.95xoc0ve.jplace
112s [20:11:01] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_27/pplacer.backbone.4bjsx685.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_27/pplacer.tree.okdu5fhs.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_27/pplacer.extended.0.4kkcmfes.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_27/pplacer.extended.0.4kkcmfes.jplace
112s [20:11:01] checkpointing.py (line 147):     INFO: Paused Checkpointing. Cumulative time: 0
113s [20:11:02] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpm6xo18mi/output_placement.json
113s [20:11:02] checkpointing.py (line 136):     INFO: Stop Checkpointing. Cumulative time: 0
113s [20:11:02] algorithm.py (line 213):     INFO: Current execution Finished in 5 seconds
113s [20:11:02] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 0 cumulative time
113s [20:11:02] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testCheckPoint.py:29: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
113s   self.x.options.alignment_file = open(
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testCheckPoint.py:32: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
113s   self.x.options.info_file = open(
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testCheckPoint.py:36: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
113s   self.x.options.tree_file = open(
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testCheckPoint.py:39: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
113s   self.x.options.fragment_file = open(
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s ok
113s testConfigFile (testConfig.Test.testConfigFile) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test.config' mode='r' encoding='UTF-8'>
113s   setattr(namespace, self.dest, values)
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s ok
113s testConfigFileMissingFile (testConfig.Test.testConfigFileMissingFile) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:66: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test.config' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>
113s   setattr(namespace, self.dest, values)
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'>
113s   setattr(namespace, self.dest, values)
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/simulated/test.small.fas' mode='r' encoding='UTF-8'>
113s   setattr(namespace, self.dest, values)
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s ok
113s testCpuCount (testConfig.Test.testCpuCount) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/simulated/test.small.fas' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /tmp/tmp.H8zxaNp5nO/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'>
113s   config._options_singelton = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s ok
113s testLog (testConfig.Test.testLog) ... [20:11:02] testConfig.py (line 147):    DEBUG: test debugging works
113s ok
113s testMainConfigFile (testConfig.Test.testMainConfigFile) ... [20:11:02] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmpf65e5ah_
113s Proceeding without the main configuration...
113s [20:11:02] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmpf65e5ah_
113s Proceeding without the main configuration...
113s [20:11:02] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmpf65e5ah_
113s Proceeding without the main configuration...
113s [20:11:02] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmpf65e5ah_
113s Proceeding without the main configuration...
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s [20:11:02] config.py (line 371):     INFO: Seed number: 297834
113s ok
113s testError (testExternalJobs.Test.testError) ... Traceback (most recent call last):
113s   File "/usr/lib/python3/dist-packages/sepp/jobs.py", line 150, in run
113s     raise JobError("\n".join([
113s     ...<3 lines>...
113s         if self.read_stderr() else 'No error messages available']))
113s sepp.scheduler.JobError: The following execution failed:
113s find somerandomdirectorywewillneverhavehere_ordowe
113s find: ‘somerandomdirectorywewillneverhavehere_ordowe’: No such file or directory
113s 
113s --- * algorithm <Logger sepp.algorithm (INFO)>
113s --- * alignment <Logger sepp.alignment (INFO)>
113s --- * backtranslate None
113s --- * checkpointing <Logger sepp.checkpointing (INFO)>
113s --- * config <Logger sepp.config (INFO)>
113s --- * decompose_tree <Logger sepp.decompose_tree (INFO)>
113s --- * ensemble None
113s --- * exhaustive <Logger sepp.exhaustive (INFO)>
113s --- * exhaustive_upp <Logger sepp.exhaustive_upp (INFO)>
113s --- * filemgr <Logger sepp.filemgr (INFO)>
113s --- * jobs <Logger sepp.jobs (INFO)>
113s --- * math_utils None
113s --- * problem <Logger sepp.problem (INFO)>
113s --- * scheduler <Logger sepp.scheduler (INFO)>
113s --- * scratch None
113s --- * tree <Logger sepp.tree (INFO)>
113s --- * algorithm <Logger sepp.algorithm (DEBUG)>
113s --- * alignment <Logger sepp.alignment (DEBUG)>
113s --- * backtranslate None
113s --- * checkpointing <Logger sepp.checkpointing (DEBUG)>
113s --- * config <Logger sepp.config (DEBUG)>
113s --- * decompose_tree <Logger sepp.decompose_tree (DEBUG)>
113s --- * ensemble None
113s --- * exhaustive <Logger sepp.exhaustive (DEBUG)>
113s --- * exhaustive_upp <Logger sepp.exhaustive_upp (DEBUG)>
113s --- * filemgr <Logger sepp.filemgr (DEBUG)>
113s --- * jobs <Logger sepp.jobs (DEBUG)>
113s --- * math_utils None
113s --- * problem <Logger sepp.problem (DEBUG)>
113s --- * scheduler <Logger sepp.scheduler (DEBUG)>
113s --- * scratch None
113s --- * tree <Logger sepp.tree (DEBUG)>
113s --- * algorithm <Logger sepp.algorithm (INFO)>
113s --- * alignment <Logger sepp.alignment (INFO)>
113s --- * backtranslate None
113s --- * checkpointing <Logger sepp.checkpointing (INFO)>
113s --- * config <Logger sepp.config (INFO)>
113s --- * decompose_tree <Logger sepp.decompose_tree (INFO)>
113s --- * ensemble None
113s --- * exhaustive <Logger sepp.exhaustive (INFO)>
113s --- * exhaustive_upp <Logger sepp.exhaustive_upp (INFO)>
113s --- * filemgr <Logger sepp.filemgr (INFO)>
113s --- * jobs <Logger sepp.jobs (INFO)>
113s --- * math_utils None
113s --- * problem <Logger sepp.problem (INFO)>
113s --- * scheduler <Logger sepp.scheduler (INFO)>
113s --- * scratch None
113s --- * tree <Logger sepp.tree (INFO)>
113s ok
113s testNoPipe (testExternalJobs.Test.testNoPipe) ... [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
113s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stdout' mode='w' encoding='UTF-8'>
113s   task = job = result = func = args = kwds = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='w' encoding='UTF-8'>
113s   task = job = result = func = args = kwds = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3/dist-packages/sepp/jobs.py:169: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='r' encoding='UTF-8'>
113s   return open(self._kwargs["stderr"].name, 'r').read()
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s Traceback (most recent call last):
113s   File "/usr/lib/python3/dist-packages/sepp/jobs.py", line 150, in run
113s     raise JobError("\n".join([
113s     ...<3 lines>...
113s         if self.read_stderr() else 'No error messages available']))
113s sepp.scheduler.JobError: The following execution failed:
113s find somerandomdirectorywewillneverhavehere_ordowe
113s find: ‘somerandomdirectorywewillneverhavehere_ordowe’: No such file or directory
113s 
113s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stdout' mode='w' encoding='UTF-8'>
113s   task = job = result = func = args = kwds = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='w' encoding='UTF-8'>
113s   task = job = result = func = args = kwds = None
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s ok
113s testSuccess (testExternalJobs.Test.testSuccess) ... [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testConfig.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testConfig.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testConfig.py (pipe: 0)
113s [20:11:02] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testConfig.py (pipe: 0)
113s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3536) is multi-threaded, use of fork() may lead to deadlocks in the child.
113s   self.pid = os.fork()
113s ok
113s testMerge (testMerge.Test.testMerge) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testMerge.py:25: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/tempmerge' mode='r' encoding='UTF-8'>
113s   stdindata = open(get_data_path("tmp/tempmerge")).read()
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s [20:11:02] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/mergedfile
113s [20:11:02] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/mergedfile
113s [20:11:02] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/mergedfile
113s [20:11:02] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.H8zxaNp5nO/test/unittest/data/tmp/mergedfile
113s ok
113s test_diamCent (testMidpoint.Test.test_diamCent) ... [20:11:02] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
113s [20:11:02] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
113s [20:11:02] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
113s [20:11:02] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
113s [20:11:02] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
113s [20:11:02] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
113s [20:11:02] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
113s [20:11:02] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
113s [20:11:02] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp5agurdrr', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
113s [20:11:02] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp5agurdrr', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
113s [20:11:02] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp5agurdrr', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
113s [20:11:02] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp5agurdrr', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
113s [20:11:02] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
113s [20:11:02] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
113s [20:11:02] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
113s [20:11:02] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
113s [20:11:02] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
113s [20:11:02] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
113s /usr/lib/python3.13/multiprocessing/pool.py:268: ResourceWarning: unclosed running multiprocessing pool <multiprocessing.pool.Pool state=RUN pool_size=2>
113s   _warn(f"unclosed running multiprocessing pool {self!r}",
113s ResourceWarning: Enable tracemalloc to get the object allocation traceback
113s [20:11:02] algorithm.py (line 298):     INFO: Tree has 508 leaves
113s [20:11:02] algorithm.py (line 298):     INFO: Tree has 508 leaves
113s [20:11:02] algorithm.py (line 298):     INFO: Tree has 508 leaves
113s [20:11:02] algorithm.py (line 298):     INFO: Tree has 508 leaves
113s [20:11:02] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
113s [20:11:02] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
113s [20:11:02] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
113s [20:11:02] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
113s [20:11:02] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
113s [20:11:02] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
113s [20:11:02] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
113s [20:11:02] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
113s [20:11:02] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
113s [20:11:02] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
113s [20:11:02] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
113s [20:11:02] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
113s [20:11:02] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
113s [20:11:02] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
113s [20:11:02] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
113s [20:11:02] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.y9p3uvai.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.y9p3uvai.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.y9p3uvai.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.y9p3uvai.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.pfm7q68_.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.pfm7q68_.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.pfm7q68_.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.pfm7q68_.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.z490focj.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.z490focj.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.z490focj.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.z490focj.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.ni1pufsw.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.ni1pufsw.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.ni1pufsw.fasta
114s [20:11:03] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.ni1pufsw.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.19tnv4e0.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.19tnv4e0.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.19tnv4e0.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.19tnv4e0.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ptuengsj.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ptuengsj.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ptuengsj.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ptuengsj.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.g7484_zr.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.g7484_zr.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.g7484_zr.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.g7484_zr.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.urhgzjo8.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.urhgzjo8.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.urhgzjo8.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.urhgzjo8.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.m31dyjvq.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.m31dyjvq.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.m31dyjvq.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.m31dyjvq.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.9dhahzxd.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.9dhahzxd.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.9dhahzxd.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.9dhahzxd.fasta
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
115s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w9db6z2k, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.ssc29c5l, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:04] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7l_hi0x1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.ljsubl1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.0f6iy7mf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.b68436a_, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.whpzfbxl, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.o17kefoj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.3c7wsc3m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0kfgka9g7.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.kgrqd_sz, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1lb5as6qh.fasta, elim:99999999, filter:False, output:Piped
116s [20:11:05] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
116s [20:11:05] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
116s [20:11:05] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
116s [20:11:05] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.y875ryvu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.y875ryvu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.y875ryvu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.mwdq2bmd, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.y875ryvu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.vspud7jx' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.vspud7jx) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.vspud7jx) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.vspud7jx) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.vspud7jx) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.xejc3lza.fasta).
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.8b5zi9pl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.8b5zi9pl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.8b5zi9pl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.8b5zi9pl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.ntk9vc5z.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.ntk9vc5z.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.ntk9vc5z.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.sh7iv2xm, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.ntk9vc5z.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.i9usltht' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.i9usltht) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.i9usltht) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.i9usltht) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.i9usltht) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.dw5du4lb.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.dw5du4lb.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.dw5du4lb.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.dw5du4lb.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.ummt2hss' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.ummt2hss) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.ummt2hss) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.ummt2hss) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.ummt2hss) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.2oexom10.fasta).
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag._omyj_lt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag._omyj_lt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag._omyj_lt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.49omqksn, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag._omyj_lt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.dxv2df22' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.dxv2df22) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.dxv2df22) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.dxv2df22) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.dxv2df22) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.62dm15fg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.62dm15fg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.62dm15fg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.f0szz47c, fragments:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.62dm15fg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.results._pdnayez' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.results._pdnayez) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.results._pdnayez) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.results._pdnayez) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_1/hmmalign.results._pdnayez) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.k1j0ou72.fasta).
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.y9p3uvai.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.ei5x0_qo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.ei5x0_qo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.ei5x0_qo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.0zgmwo6x, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.ei5x0_qo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.muvs05ux.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.muvs05ux.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.muvs05ux.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mj9g3a1i, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.muvs05ux.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.pfm7q68_.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.z490focj.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.szfkuu0g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.szfkuu0g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.szfkuu0g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
116s [20:11:05] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model._f65h3vk, fragments:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.szfkuu0g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.ni1pufsw.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.19tnv4e0.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ptuengsj.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.g7484_zr.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.6c41c4m_' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.6c41c4m_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.6c41c4m_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.6c41c4m_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.6c41c4m_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.hduslsim.fasta).
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.urhgzjo8.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.m31dyjvq.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.fc20k2ad' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.fc20k2ad) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.fc20k2ad) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.fc20k2ad) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.fc20k2ad) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.2mks1j14.fasta).
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.kf4y1yk8' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.kf4y1yk8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.kf4y1yk8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.kf4y1yk8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.kf4y1yk8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.6kc4tbpp.fasta).
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.9dhahzxd.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
116s [20:11:05] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
116s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta' mode='r' encoding='UTF-8'>
116s   self.read_filepath(base_alignment, "FASTA")
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.kzybucwl' mode='r' encoding='UTF-8'>
116s   ext.read_extended_alignment(path)
116s ResourceWarning: Enable tracemalloc to get the object allocation traceback
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.kzybucwl) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.kzybucwl) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.kzybucwl) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta).
116s [20:11:05] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.kzybucwl) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.62_h99_q.fasta).
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.mnp03ls1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.2pqa1yuq.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.mnp03ls1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.2pqa1yuq.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.mnp03ls1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.2pqa1yuq.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.mnp03ls1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.2pqa1yuq.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.uuaxvz2e.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.backbone.bqralrhp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.tree.vu_a1ca0.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.backbone.bqralrhp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.tree.vu_a1ca0.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.backbone.bqralrhp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.tree.vu_a1ca0.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.backbone.bqralrhp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.tree.vu_a1ca0.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_0/pplacer.extended.0.23ojtecx.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.edei9xh0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.z7delk3l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.edei9xh0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.z7delk3l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.edei9xh0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.z7delk3l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.edei9xh0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.z7delk3l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.h9br1clc.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tlxzpdio.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.sek3u9_1.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tlxzpdio.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.sek3u9_1.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tlxzpdio.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.sek3u9_1.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tlxzpdio.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.sek3u9_1.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.4d6cjwvb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tsxod5cz.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8glrjzws.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tsxod5cz.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8glrjzws.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tsxod5cz.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8glrjzws.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.tsxod5cz.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8glrjzws.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.1.a0e_ibyi.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.backbone.n3ytdcla.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.tree.9i8xgidu.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.backbone.n3ytdcla.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.tree.9i8xgidu.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.backbone.n3ytdcla.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.tree.9i8xgidu.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.backbone.n3ytdcla.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.tree.9i8xgidu.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_3/pplacer.extended.0.kt78rx00.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.705z7v0w.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.nupcj8_v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.705z7v0w.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.nupcj8_v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.705z7v0w.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.nupcj8_v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.705z7v0w.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.nupcj8_v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.kgwz7wxj.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.sgvgna8j.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.gzwa9s40.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.sgvgna8j.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.gzwa9s40.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.sgvgna8j.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.gzwa9s40.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.sgvgna8j.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.gzwa9s40.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.wxpinchb.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.backbone.h3xrrapt.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.tree.psacvul_.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.backbone.h3xrrapt.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.tree.psacvul_.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.backbone.h3xrrapt.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.tree.psacvul_.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.jplace
116s [20:11:05] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.backbone.h3xrrapt.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.tree.psacvul_.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_15/pplacer.extended.0.znmi4nvy.jplace
117s [20:11:06] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp5agurdrr/output_placement.json
117s [20:11:06] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp5agurdrr/output_placement.json
117s [20:11:06] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp5agurdrr/output_placement.json
117s [20:11:06] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp5agurdrr/output_placement.json
117s [20:11:06] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
117s [20:11:06] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
117s [20:11:06] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
117s [20:11:06] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
117s [20:11:06] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
117s [20:11:06] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
117s [20:11:06] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
117s [20:11:06] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
117s [20:11:06] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
117s [20:11:06] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
117s [20:11:06] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
117s [20:11:06] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
117s /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:27: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
117s   self.x.options.alignment_file = open(
117s ResourceWarning: Enable tracemalloc to get the object allocation traceback
117s /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:30: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
117s   self.x.options.info_file = open(
117s ResourceWarning: Enable tracemalloc to get the object allocation traceback
117s /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
117s   self.x.options.tree_file = open(
117s ResourceWarning: Enable tracemalloc to get the object allocation traceback
117s ok
117s test_diamMid (testMidpoint.Test.test_diamMid) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:56: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
117s   self.x.options.fragment_file = open(
117s ResourceWarning: Enable tracemalloc to get the object allocation traceback
117s [20:11:06] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
117s [20:11:06] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
117s [20:11:06] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
117s [20:11:06] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
117s [20:11:06] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
117s [20:11:06] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
117s [20:11:06] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
117s [20:11:06] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
117s [20:11:06] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpm6sso1aj', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
117s [20:11:06] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpm6sso1aj', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
117s [20:11:06] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpm6sso1aj', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
117s [20:11:06] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpm6sso1aj', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
117s [20:11:06] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
117s [20:11:06] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
117s [20:11:06] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
117s [20:11:06] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
117s [20:11:06] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
117s [20:11:06] algorithm.py (line 298):     INFO: Tree has 508 leaves
117s [20:11:06] algorithm.py (line 298):     INFO: Tree has 508 leaves
117s [20:11:06] algorithm.py (line 298):     INFO: Tree has 508 leaves
117s [20:11:06] algorithm.py (line 298):     INFO: Tree has 508 leaves
117s [20:11:06] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
117s [20:11:06] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
117s [20:11:06] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
117s [20:11:06] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
117s [20:11:06] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
117s [20:11:06] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
117s [20:11:06] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
117s [20:11:06] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
117s [20:11:06] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
117s [20:11:06] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
117s [20:11:06] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
117s [20:11:06] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
117s [20:11:06] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
117s [20:11:06] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
117s [20:11:06] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
117s [20:11:06] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ianmdsdg.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ianmdsdg.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ianmdsdg.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ianmdsdg.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.c8nd3jsj.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.c8nd3jsj.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.c8nd3jsj.fasta
117s [20:11:06] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.c8nd3jsj.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.ndiw5iah.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.ndiw5iah.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.ndiw5iah.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.ndiw5iah.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.s3bmbyy2.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.s3bmbyy2.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.s3bmbyy2.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.s3bmbyy2.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.tr71j2ez.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.tr71j2ez.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.tr71j2ez.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.tr71j2ez.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.yn9f2lg3.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.yn9f2lg3.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.yn9f2lg3.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.yn9f2lg3.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.dcumkuog.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.dcumkuog.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.dcumkuog.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.dcumkuog.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.eitub6li.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.eitub6li.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.eitub6li.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.eitub6li.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
118s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:07] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.lkgeauqu.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.lkgeauqu.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.lkgeauqu.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.lkgeauqu.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.6fblyj1p.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.6fblyj1p.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.6fblyj1p.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.6fblyj1p.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.msb_nola, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.0ey1k4ow, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.yh3rqroy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.7bmeaall, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.1slsdpzd, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.j47sviac, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.tfdwv20j, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.m9nzbr9i, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.hjgh3kb5, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_02bsebron.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.csfeqej2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_182zuoqez.fasta, elim:99999999, filter:False, output:Piped
119s [20:11:08] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
119s [20:11:08] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
119s [20:11:08] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
119s [20:11:08] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.ianmdsdg.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.z8a6h0hy.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.z8a6h0hy.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.z8a6h0hy.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.y1g4xr_4, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.z8a6h0hy.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.v6pdt2n_' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.v6pdt2n_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.v6pdt2n_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.v6pdt2n_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.v6pdt2n_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.kbu3kshi.fasta).
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.7j4k_a1q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.7j4k_a1q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.7j4k_a1q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.unp9hbfo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.7j4k_a1q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.c8nd3jsj.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.e6hgi22y.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.e6hgi22y.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.e6hgi22y.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.y3kw2fiv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.e6hgi22y.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.ndiw5iah.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.rauljr_r.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.rauljr_r.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.rauljr_r.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.gveefl83, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.rauljr_r.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.jz7rutrg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.jz7rutrg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.jz7rutrg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.jz7rutrg.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.frx6qmqq' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.frx6qmqq) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.frx6qmqq) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.frx6qmqq) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.frx6qmqq) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.rgsdp1oi.fasta).
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.f6q1tj1i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.f6q1tj1i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.f6q1tj1i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.vl3cehlq, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.f6q1tj1i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.s3bmbyy2.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag._fy_13o6.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.tr71j2ez.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag._fy_13o6.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag._fy_13o6.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag._fy_13o6.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.zekk2zha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.zekk2zha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.zekk2zha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.cd57mqh1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.zekk2zha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.yn9f2lg3.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.dcumkuog.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.kokjua3d.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.kokjua3d.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.kokjua3d.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.fte_lcjo, fragments:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.kokjua3d.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.eitub6li.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.mfhtbfah' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.mfhtbfah) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.mfhtbfah) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.mfhtbfah) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.mfhtbfah) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.u226ysk8.fasta).
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.c8n0f_v0' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.c8n0f_v0) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.c8n0f_v0) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.c8n0f_v0) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.c8n0f_v0) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.h16fcz87.fasta).
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.2yonbuu6' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.2yonbuu6) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.2yonbuu6) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.2yonbuu6) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.2yonbuu6) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.60mqadth' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.60mqadth) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.60mqadth) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.60mqadth) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.60mqadth) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.ifizdpkg.fasta).
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.2nz_rcd8' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.2nz_rcd8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.2nz_rcd8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.2nz_rcd8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.2nz_rcd8) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.uuuwz133' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.uuuwz133) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.uuuwz133) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.uuuwz133) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.uuuwz133) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.a155eeg8.fasta).
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.lkgeauqu.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.6fblyj1p.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
119s [20:11:08] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
119s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta' mode='r' encoding='UTF-8'>
119s   self.read_filepath(base_alignment, "FASTA")
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.77trpvsi' mode='r' encoding='UTF-8'>
119s   ext.read_extended_alignment(path)
119s ResourceWarning: Enable tracemalloc to get the object allocation traceback
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.77trpvsi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.77trpvsi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.77trpvsi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta).
119s [20:11:08] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.77trpvsi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.aki63zsk.fasta).
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.uvuybqnn.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8mfenb2k.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.uvuybqnn.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8mfenb2k.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.uvuybqnn.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8mfenb2k.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.backbone.uvuybqnn.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.tree.8mfenb2k.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_2/pplacer.extended.0.zhwsv4vb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.k8f68m53.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.qdpxm0nx.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.k8f68m53.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.qdpxm0nx.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.k8f68m53.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.qdpxm0nx.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.k8f68m53.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.qdpxm0nx.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.arf4840v.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.6bdx3wbe.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.5ixxlpp4.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.6bdx3wbe.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.5ixxlpp4.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.6bdx3wbe.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.5ixxlpp4.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.6bdx3wbe.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.5ixxlpp4.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wwx7b4gu.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.12xu22bx.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.zsgo23r9.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.12xu22bx.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.zsgo23r9.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.12xu22bx.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.zsgo23r9.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.12xu22bx.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.zsgo23r9.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.7talrsk0.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.jj4o3yl9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.hidzm40y.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.jj4o3yl9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.hidzm40y.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.jj4o3yl9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.hidzm40y.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.jj4o3yl9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.hidzm40y.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.1.j0097iqj.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.rti1uae3.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.trknzv0u.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.rti1uae3.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.trknzv0u.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.rti1uae3.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.trknzv0u.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.jplace
119s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone.rti1uae3.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.trknzv0u.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0._igxsbeb.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.zcn820y9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.eo4lj0ry.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.zcn820y9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.eo4lj0ry.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.zcn820y9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.eo4lj0ry.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.zcn820y9.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.eo4lj0ry.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.0.kp29t9xo.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.7ewflkfl.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.hqq5bppg.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.7ewflkfl.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.hqq5bppg.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.7ewflkfl.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.hqq5bppg.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.jplace
120s [20:11:08] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.backbone.7ewflkfl.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.tree.hqq5bppg.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_13/pplacer.extended.1.zep6gv9f.jplace
120s [20:11:09] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.1bgth4m0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.jk9_nx33.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.jplace
120s [20:11:09] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.1bgth4m0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.jk9_nx33.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.jplace
120s [20:11:09] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.1bgth4m0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.jk9_nx33.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.jplace
120s [20:11:09] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.backbone.1bgth4m0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.tree.jk9_nx33.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_14/pplacer.extended.0.wzbv1k75.jplace
120s [20:11:09] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpm6sso1aj/output_placement.json
120s [20:11:09] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpm6sso1aj/output_placement.json
120s [20:11:09] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpm6sso1aj/output_placement.json
120s [20:11:09] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpm6sso1aj/output_placement.json
120s [20:11:09] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
120s [20:11:09] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
120s [20:11:09] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
120s [20:11:09] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
120s [20:11:09] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
120s [20:11:09] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
120s [20:11:09] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
120s [20:11:09] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
120s [20:11:09] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
120s [20:11:09] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
120s [20:11:09] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
120s [20:11:09] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
120s /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:27: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
120s   self.x.options.alignment_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:30: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
120s   self.x.options.info_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s /tmp/tmp.H8zxaNp5nO/test/unittest/testMidpoint.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
120s   self.x.options.tree_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s ok
120s test_fake_jobs (testSepp.Test.test_fake_jobs) ... /tmp/tmp.H8zxaNp5nO/test/unittest/testSepp.py:28: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
120s   self.x.options.alignment_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s /tmp/tmp.H8zxaNp5nO/test/unittest/testSepp.py:31: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
120s   self.x.options.info_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s /tmp/tmp.H8zxaNp5nO/test/unittest/testSepp.py:35: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
120s   self.x.options.tree_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s /tmp/tmp.H8zxaNp5nO/test/unittest/testSepp.py:83: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
120s   self.x.options.fragment_file = open(
120s ResourceWarning: Enable tracemalloc to get the object allocation traceback
120s [20:11:09] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
120s [20:11:09] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
120s [20:11:09] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
120s [20:11:09] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
120s [20:11:09] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
120s [20:11:09] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
120s [20:11:09] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
120s [20:11:09] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
120s [20:11:09] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpfqnjom0z', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
120s [20:11:09] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpfqnjom0z', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
120s [20:11:09] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpfqnjom0z', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
120s [20:11:09] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpfqnjom0z', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
120s [20:11:09] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
120s [20:11:09] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
120s [20:11:09] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
120s [20:11:09] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
120s [20:11:09] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
120s [20:11:09] algorithm.py (line 298):     INFO: Tree has 508 leaves
120s [20:11:09] algorithm.py (line 298):     INFO: Tree has 508 leaves
120s [20:11:09] algorithm.py (line 298):     INFO: Tree has 508 leaves
120s [20:11:09] algorithm.py (line 298):     INFO: Tree has 508 leaves
120s [20:11:09] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
120s [20:11:09] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
120s [20:11:09] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
120s [20:11:09] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
120s [20:11:09] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
120s [20:11:09] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
120s [20:11:09] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
120s [20:11:09] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
120s [20:11:09] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
120s [20:11:09] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
120s [20:11:09] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
120s [20:11:09] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
120s [20:11:09] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
120s [20:11:09] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
120s [20:11:09] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
120s [20:11:09] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.8gt212kx.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.8gt212kx.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.8gt212kx.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.8gt212kx.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.vnjoqsux.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.vnjoqsux.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.vnjoqsux.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.vnjoqsux.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.6l3zgfok.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.6l3zgfok.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.6l3zgfok.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.6l3zgfok.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.kvqnzdp4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.kvqnzdp4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.kvqnzdp4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.kvqnzdp4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.b1lxcdv4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.b1lxcdv4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.b1lxcdv4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.b1lxcdv4.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.bewu1p4q.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.bewu1p4q.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.bewu1p4q.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.bewu1p4q.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.osmp9b6f.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.osmp9b6f.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.osmp9b6f.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.osmp9b6f.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.dl4be8zg.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.dl4be8zg.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.dl4be8zg.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.dl4be8zg.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.g5q8q_a2.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.g5q8q_a2.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.g5q8q_a2.fasta
121s [20:11:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.g5q8q_a2.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ixcews3p.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ixcews3p.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ixcews3p.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ixcews3p.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.u36ubi_3.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.u36ubi_3.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.u36ubi_3.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.u36ubi_3.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.8s_r3iuu.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.8s_r3iuu.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.8s_r3iuu.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.8s_r3iuu.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.b37dasxj.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.b37dasxj.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.b37dasxj.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.b37dasxj.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.tg_n_b11.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.tg_n_b11.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.tg_n_b11.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.tg_n_b11.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.zrkvqaya.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.zrkvqaya.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.zrkvqaya.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.zrkvqaya.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.pujltkvz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.pujltkvz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.pujltkvz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.pujltkvz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.6kup_15i.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.6kup_15i.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.6kup_15i.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.6kup_15i.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.q60d3feh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.q60d3feh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.q60d3feh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.q60d3feh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.ls7g2tmc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.ls7g2tmc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.ls7g2tmc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.ls7g2tmc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.6sjqy_bp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.6sjqy_bp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.6sjqy_bp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.6sjqy_bp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.qs_kow5s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.qs_kow5s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.qs_kow5s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.qs_kow5s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.vnbx8r37, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.vnbx8r37, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.vnbx8r37, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.vnbx8r37, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.puyu0dzw, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.puyu0dzw, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.puyu0dzw, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.puyu0dzw, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.ot2g3jqz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.ot2g3jqz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.ot2g3jqz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.ot2g3jqz.fasta
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.upv4donp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.upv4donp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.upv4donp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.upv4donp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.kawjkygx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.kawjkygx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.kawjkygx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.kawjkygx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.7po5yfht, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.7po5yfht, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.7po5yfht, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.7po5yfht, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.v1g4yukm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.v1g4yukm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.v1g4yukm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.v1g4yukm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.1wknjzuv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.1wknjzuv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.1wknjzuv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.1wknjzuv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.ss4o76hh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.ss4o76hh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.ss4o76hh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.ss4o76hh, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.7d2_f7em, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.7d2_f7em, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.7d2_f7em, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.7d2_f7em, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.mil5duck, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.mil5duck, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.mil5duck, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.mil5duck, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.y0alod0q, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.y0alod0q, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.y0alod0q, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.y0alod0q, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.knon7kvm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.knon7kvm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.knon7kvm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
122s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.knon7kvm, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.ledvw1fi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.ledvw1fi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.ledvw1fi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.ledvw1fi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.sb_ncxvp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.sb_ncxvp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.sb_ncxvp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.sb_ncxvp, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_071p14d91.fasta, elim:99999999, filter:False, output:Piped
123s [20:11:11] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
123s [20:11:11] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
123s [20:11:11] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
123s [20:11:11] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.vnjoqsux.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.8gt212kx.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.6l3zgfok.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
123s [20:11:11] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.wzqlibrx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.wzqlibrx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.wzqlibrx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
123s [20:11:11] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.j8u4vwj8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.wzqlibrx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.kvqnzdp4.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.bewu1p4q.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.b1lxcdv4.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.osmp9b6f.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.dl4be8zg.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.g5q8q_a2.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.ixcews3p.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.u36ubi_3.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.8s_r3iuu.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.b37dasxj.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.zrkvqaya.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.tg_n_b11.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.pujltkvz.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.6kup_15i.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.ot2g3jqz.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
123s [20:11:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
123s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta' mode='r' encoding='UTF-8'>
123s   self.read_filepath(base_alignment, "FASTA")
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.v8k983vc' mode='r' encoding='UTF-8'>
123s   ext.read_extended_alignment(path)
123s ResourceWarning: Enable tracemalloc to get the object allocation traceback
123s [20:11:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.v8k983vc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta).
123s [20:11:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.v8k983vc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta).
123s [20:11:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.v8k983vc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta).
123s [20:11:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.v8k983vc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.y9fprdrx.fasta).
123s [20:11:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.2271zln4.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.1bwk3a6e.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.jplace
123s [20:11:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.2271zln4.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.1bwk3a6e.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.jplace
123s [20:11:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.2271zln4.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.1bwk3a6e.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.jplace
123s [20:11:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.2271zln4.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.1bwk3a6e.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.cu1is7rc.jplace
123s [20:11:12] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpfqnjom0z/output_placement.json
123s [20:11:12] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpfqnjom0z/output_placement.json
123s [20:11:12] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpfqnjom0z/output_placement.json
123s [20:11:12] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpfqnjom0z/output_placement.json
123s [20:11:12] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
123s [20:11:12] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
123s [20:11:12] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
123s [20:11:12] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
123s [20:11:12] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
123s [20:11:12] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
123s [20:11:12] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
123s [20:11:12] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
123s [20:11:12] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
123s [20:11:12] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
123s [20:11:12] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
123s [20:11:12] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
123s ok
123s test_id_collision_collision (testSepp.Test.test_id_collision_collision) ... [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp7c9uzt3o', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp7c9uzt3o', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp7c9uzt3o', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp7c9uzt3o', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s ok
123s test_id_collision_working (testSepp.Test.test_id_collision_working) ... [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp8azel1d4', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp8azel1d4', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp8azel1d4', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp8azel1d4', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 298):     INFO: Tree has 508 leaves
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
123s [20:11:12] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
123s [20:11:12] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
123s [20:11:12] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
123s [20:11:12] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
123s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
123s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
123s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
123s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
124s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.m2ks2vrr.fasta
124s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.m2ks2vrr.fasta
124s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.m2ks2vrr.fasta
124s [20:11:12] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.m2ks2vrr.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.3gg39b95.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.3gg39b95.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.3gg39b95.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.3gg39b95.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.pbgi_u3d.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.pbgi_u3d.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.pbgi_u3d.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.pbgi_u3d.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.jvkpln5y.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.jvkpln5y.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.jvkpln5y.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.jvkpln5y.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.7vbbj8k1.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.7vbbj8k1.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.7vbbj8k1.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.7vbbj8k1.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.081es2h9.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.081es2h9.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.081es2h9.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.081es2h9.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
124s [20:11:13] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.8oi4n7er.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.8oi4n7er.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.8oi4n7er.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.8oi4n7er.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.tcty1osm.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.tcty1osm.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.tcty1osm.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.tcty1osm.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.shaynrb7.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.shaynrb7.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.shaynrb7.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.shaynrb7.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.2hiyx9bx.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.2hiyx9bx.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.2hiyx9bx.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.2hiyx9bx.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.pf9z_nfy.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.pf9z_nfy.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.pf9z_nfy.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.pf9z_nfy.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input._q50fhps.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input._q50fhps.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input._q50fhps.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input._q50fhps.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.og139go7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model._pxgtgfx, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.g2r7cb7m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.vijjxhml, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.qb1kb5_m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.ug63wvds, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.rw7rjbu1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.6f5k7xzk, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.c693wzaa, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.jwbui4d7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.r2cqr0i2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0dbwyqdhj.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.psrr167t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1_iqwdtuu.fasta, elim:99999999, filter:False, output:Piped
125s [20:11:14] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
125s [20:11:14] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
125s [20:11:14] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
125s [20:11:14] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
125s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.m2ks2vrr.fasta' mode='r' encoding='UTF-8'>
125s   self.read_filepath(base_alignment, "FASTA")
125s ResourceWarning: Enable tracemalloc to get the object allocation traceback
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.rz3m3mz9.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.rz3m3mz9.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.rz3m3mz9.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.rz3m3mz9.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.3i8dharu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.3i8dharu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.3i8dharu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.0wmw9qmx, fragments:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.3i8dharu.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
125s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.3gg39b95.fasta' mode='r' encoding='UTF-8'>
125s   self.read_filepath(base_alignment, "FASTA")
125s ResourceWarning: Enable tracemalloc to get the object allocation traceback
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
125s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.pbgi_u3d.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.4ysycw1i' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.4ysycw1i) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.4ysycw1i) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.4ysycw1i) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.4ysycw1i) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.p77dmx_e' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.p77dmx_e) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.p77dmx_e) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.p77dmx_e) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.p77dmx_e) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.jvxxy87u.fasta).
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.mmefr00k.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.mmefr00k.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.mmefr00k.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.mmefr00k.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.ck7g9ozw.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.ck7g9ozw.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.ck7g9ozw.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.94upm24s, fragments:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.ck7g9ozw.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.n4saz89f' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.n4saz89f) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.n4saz89f) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.n4saz89f) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.n4saz89f) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.ncptgyid' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.ncptgyid) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.ncptgyid) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.ncptgyid) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.ncptgyid) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.qwdw52qr.fasta).
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.rz5fqt2q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.rz5fqt2q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.rz5fqt2q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.rz5fqt2q.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.pm9j0uha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.pm9j0uha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.pm9j0uha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.g84kmb1t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.pm9j0uha.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
126s [20:11:14] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jyvrywux' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jyvrywux) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jyvrywux) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jyvrywux) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jyvrywux) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ru7bp72g' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ru7bp72g) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ru7bp72g) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ru7bp72g) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:14] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ru7bp72g) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.e5eu8pqc.fasta).
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.ciq5dvpp.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.ciq5dvpp.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.ciq5dvpp.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.4_erf7kr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.ciq5dvpp.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.0vsqfc8s' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.0vsqfc8s) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.0vsqfc8s) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.0vsqfc8s) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.0vsqfc8s) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.arednlsb.fasta).
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.c5fdhp1g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.c5fdhp1g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.c5fdhp1g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.pr2lyoyv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.c5fdhp1g.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input.jvkpln5y.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.7vbbj8k1.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.y58k_5su.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.y58k_5su.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.y58k_5su.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.b_5rqtyr, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.y58k_5su.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.081es2h9.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f0naqw2_' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f0naqw2_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f0naqw2_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f0naqw2_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f0naqw2_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input.o560ahno.fasta).
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.0rhoukqo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.0rhoukqo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.0rhoukqo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
126s [20:11:15] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.il_krzni, fragments:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.0rhoukqo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.x_wexhyd' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.x_wexhyd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.x_wexhyd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.x_wexhyd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.x_wexhyd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.rjrcobot.fasta).
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.8oi4n7er.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.tcty1osm.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.shaynrb7.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.2hiyx9bx.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input._q50fhps.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.pf9z_nfy.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
126s [20:11:15] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
126s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta' mode='r' encoding='UTF-8'>
126s   self.read_filepath(base_alignment, "FASTA")
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.z3eo9fbd' mode='r' encoding='UTF-8'>
126s   ext.read_extended_alignment(path)
126s ResourceWarning: Enable tracemalloc to get the object allocation traceback
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.z3eo9fbd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.z3eo9fbd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.z3eo9fbd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta).
126s [20:11:15] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.z3eo9fbd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.wwm5o37c.fasta).
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.4sr3qmse.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.naa4b8gb.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.4sr3qmse.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.naa4b8gb.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.4sr3qmse.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.naa4b8gb.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.4sr3qmse.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.naa4b8gb.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.0.xfushu8l.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.m6cy4rqd.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.l7thke4l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.m6cy4rqd.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.l7thke4l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.m6cy4rqd.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.l7thke4l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.backbone.m6cy4rqd.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.tree.l7thke4l.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_1/pplacer.extended.1.jgkzgzid.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone._c92w629.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.hfg8x_88.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone._c92w629.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.hfg8x_88.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone._c92w629.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.hfg8x_88.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone._c92w629.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.hfg8x_88.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.0.0hn_2u8g.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone.abyha7jk.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.x91rkb97.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone.abyha7jk.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.x91rkb97.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone.abyha7jk.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.x91rkb97.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.backbone.abyha7jk.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.tree.x91rkb97.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_4/pplacer.extended.1.gbo296xv.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.goeuztrm.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.r0mm1idh.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.goeuztrm.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.r0mm1idh.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.goeuztrm.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.r0mm1idh.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.goeuztrm.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.r0mm1idh.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.0.wgpb8ppw.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.bbzkivx5.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.bxi38crj.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.bbzkivx5.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.bxi38crj.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.bbzkivx5.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.bxi38crj.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.backbone.bbzkivx5.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.tree.bxi38crj.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_5/pplacer.extended.1.p3tly7g9.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.backbone.9r_k7p2t.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.tree.clp492_b.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.backbone.9r_k7p2t.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.tree.clp492_b.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.backbone.9r_k7p2t.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.tree.clp492_b.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.backbone.9r_k7p2t.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.tree.clp492_b.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_6/pplacer.extended.0.jgos5bfz.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.backbone.2_1e81fp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.tree.sybk0b_d.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.backbone.2_1e81fp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.tree.sybk0b_d.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.backbone.2_1e81fp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.tree.sybk0b_d.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.backbone.2_1e81fp.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.tree.sybk0b_d.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_7/pplacer.extended.0.953gnu3r.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.6n17rqn1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.a3e5igsy.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.6n17rqn1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.a3e5igsy.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.6n17rqn1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.a3e5igsy.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.6n17rqn1.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.a3e5igsy.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0.x9dkt4rk.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone._l8lxgy0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.do68f60v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone._l8lxgy0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.do68f60v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone._l8lxgy0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.do68f60v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.backbone._l8lxgy0.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.tree.do68f60v.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_12/pplacer.extended.0.2gn0ivtf.jplace
126s [20:11:15] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp8azel1d4/output_placement.json
126s [20:11:15] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp8azel1d4/output_placement.json
126s [20:11:15] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp8azel1d4/output_placement.json
126s [20:11:15] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp8azel1d4/output_placement.json
126s [20:11:15] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
126s [20:11:15] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
126s [20:11:15] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
126s [20:11:15] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
126s [20:11:15] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
126s [20:11:15] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
126s [20:11:15] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
126s [20:11:15] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
126s [20:11:15] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
126s [20:11:15] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
126s [20:11:15] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
126s [20:11:15] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
126s ok
126s test_notpiped_jobs (testSepp.Test.test_notpiped_jobs) ... [20:11:15] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
126s [20:11:15] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
126s [20:11:15] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
126s [20:11:15] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
126s [20:11:15] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
126s [20:11:15] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
126s [20:11:15] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
126s [20:11:15] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
126s [20:11:15] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpd0sj2ul0', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
126s [20:11:15] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpd0sj2ul0', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
126s [20:11:15] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpd0sj2ul0', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
126s [20:11:15] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpd0sj2ul0', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
126s [20:11:15] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
126s [20:11:15] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
126s [20:11:15] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
126s [20:11:15] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
126s [20:11:15] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
126s [20:11:15] algorithm.py (line 298):     INFO: Tree has 508 leaves
126s [20:11:15] algorithm.py (line 298):     INFO: Tree has 508 leaves
126s [20:11:15] algorithm.py (line 298):     INFO: Tree has 508 leaves
126s [20:11:15] algorithm.py (line 298):     INFO: Tree has 508 leaves
126s [20:11:15] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
126s [20:11:15] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
126s [20:11:15] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
126s [20:11:15] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
126s [20:11:15] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
126s [20:11:15] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
126s [20:11:15] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
126s [20:11:15] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
126s [20:11:15] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
126s [20:11:15] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
126s [20:11:15] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
126s [20:11:15] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
126s [20:11:15] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
126s [20:11:15] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
126s [20:11:15] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
126s [20:11:15] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.aopl7yum.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.aopl7yum.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.aopl7yum.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.aopl7yum.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.nhtphuru.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.nhtphuru.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.nhtphuru.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.nhtphuru.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.p8qtyyvt.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.p8qtyyvt.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.p8qtyyvt.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.p8qtyyvt.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.r8ke6tuu.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.r8ke6tuu.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.r8ke6tuu.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.r8ke6tuu.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.5htet8f7.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.5htet8f7.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.5htet8f7.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.5htet8f7.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.gtvgaufd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.gtvgaufd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.gtvgaufd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.gtvgaufd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.f1clk9kd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.f1clk9kd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.f1clk9kd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.f1clk9kd.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input._nsfuw65.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input._nsfuw65.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input._nsfuw65.fasta
127s [20:11:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input._nsfuw65.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input._nxpu8fa.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input._nxpu8fa.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input._nxpu8fa.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input._nxpu8fa.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.wmenl4e8.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.wmenl4e8.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.wmenl4e8.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.wmenl4e8.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.qtnkqqqy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.qtnkqqqy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.qtnkqqqy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.qtnkqqqy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.6uhjtizi.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.6uhjtizi.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.6uhjtizi.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.6uhjtizi.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.xvrmvyrl.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.xvrmvyrl.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.xvrmvyrl.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.xvrmvyrl.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.u__fvavw.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.u__fvavw.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.u__fvavw.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.u__fvavw.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.iwa_zqtp.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.iwa_zqtp.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.iwa_zqtp.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.iwa_zqtp.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.zs691jwy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.zs691jwy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.zs691jwy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.zs691jwy.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.urcqa663.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.urcqa663.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.urcqa663.fasta
128s [20:11:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.urcqa663.fasta
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.7r7rs52m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.yfxlt72j
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.7r7rs52m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.yfxlt72j
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.7r7rs52m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.yfxlt72j
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.7r7rs52m, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.yfxlt72j
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.uva3zqmr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.ujak2zkw
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.uva3zqmr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.ujak2zkw
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.uva3zqmr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.ujak2zkw
129s [20:11:17] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.model.uva3zqmr, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.ujak2zkw
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.olgamqlk.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.olgamqlk.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.olgamqlk.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.olgamqlk.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.jci3i76r, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.2l06ara4
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.jci3i76r, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.2l06ara4
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.jci3i76r, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.2l06ara4
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.model.jci3i76r, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.2l06ara4
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.r5zd4g35, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.c3c02cik
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.r5zd4g35, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.c3c02cik
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.r5zd4g35, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.c3c02cik
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.model.r5zd4g35, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.c3c02cik
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w3zlfs_w, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.2sgo_324
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w3zlfs_w, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.2sgo_324
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w3zlfs_w, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.2sgo_324
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.model.w3zlfs_w, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.2sgo_324
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.obdqtm60, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.nv6vjlug
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.obdqtm60, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.nv6vjlug
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.obdqtm60, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.nv6vjlug
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.model.obdqtm60, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.nv6vjlug
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.3k0vy3y4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.xk5nquk3
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.3k0vy3y4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.xk5nquk3
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.3k0vy3y4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.xk5nquk3
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.model.3k0vy3y4, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.xk5nquk3
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.xmqhyko8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.l67_57dm
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.xmqhyko8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.l67_57dm
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.xmqhyko8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.l67_57dm
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.model.xmqhyko8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.l67_57dm
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.83qr43ui, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.zg0ukkoe
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.83qr43ui, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.zg0ukkoe
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.83qr43ui, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.zg0ukkoe
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.model.83qr43ui, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.zg0ukkoe
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.bte992uy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.dzvdrk73
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.bte992uy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.dzvdrk73
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.bte992uy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.dzvdrk73
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.model.bte992uy, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.dzvdrk73
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.5rl6t6xj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.z1crjdmv
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.5rl6t6xj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.z1crjdmv
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.5rl6t6xj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.z1crjdmv
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.model.5rl6t6xj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.z1crjdmv
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.c8bvsw7m
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.c8bvsw7m
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.c8bvsw7m
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.c8bvsw7m
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.kmztoc0b, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.cc7ebfm5
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.kmztoc0b, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.cc7ebfm5
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.kmztoc0b, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.cc7ebfm5
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.model.kmztoc0b, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.cc7ebfm5
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.zn263w0v, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.6wvuwxur
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.zn263w0v, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.6wvuwxur
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.zn263w0v, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.6wvuwxur
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.model.zn263w0v, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.6wvuwxur
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.v8ui6603, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.2kgzqb_l
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.v8ui6603, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.2kgzqb_l
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.v8ui6603, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.2kgzqb_l
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.model.v8ui6603, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.2kgzqb_l
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.auuxx6ma, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.922s4jxa
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.auuxx6ma, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.922s4jxa
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.auuxx6ma, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.922s4jxa
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.model.auuxx6ma, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.922s4jxa
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.1w85vs9t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.iuei5p1e
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.1w85vs9t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.iuei5p1e
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.1w85vs9t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.iuei5p1e
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.model.1w85vs9t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.iuei5p1e
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.mf8yhy3y, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.bix0zz10
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.mf8yhy3y, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.bix0zz10
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.mf8yhy3y, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.bix0zz10
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.model.mf8yhy3y, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.bix0zz10
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.czzordnu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.khk4or1b
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.czzordnu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.khk4or1b
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.czzordnu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.khk4or1b
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.model.czzordnu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0tle62wnv.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.khk4or1b
129s [20:11:18] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
129s [20:11:18] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
129s [20:11:18] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
129s [20:11:18] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.aopl7yum.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_1/A_1_0/hmmbuild.input.nhtphuru.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.w7i127l3.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.w7i127l3.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.w7i127l3.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
129s [20:11:18] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.model.mo0zrz4u, fragments:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.w7i127l3.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_2/A_2_0/hmmbuild.input.p8qtyyvt.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_3/A_3_0/hmmbuild.input.r8ke6tuu.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_4/A_4_0/hmmbuild.input.5htet8f7.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_6/A_6_0/hmmbuild.input.f1clk9kd.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_5/A_5_0/hmmbuild.input.gtvgaufd.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_7/A_7_0/hmmbuild.input._nsfuw65.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_8/A_8_0/hmmbuild.input._nxpu8fa.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_9/A_9_0/hmmbuild.input.wmenl4e8.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_10/A_10_0/hmmbuild.input.qtnkqqqy.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_12/A_12_0/hmmbuild.input.xvrmvyrl.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_13/A_13_0/hmmbuild.input.6uhjtizi.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_14/A_14_0/hmmbuild.input.u__fvavw.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_15/A_15_0/hmmbuild.input.iwa_zqtp.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_16/A_16_0/hmmbuild.input.zs691jwy.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_17/A_17_0/hmmbuild.input.urcqa663.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_18/A_18_0/hmmbuild.input.olgamqlk.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
129s [20:11:18] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
129s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta' mode='r' encoding='UTF-8'>
129s   self.read_filepath(base_alignment, "FASTA")
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.2zma99g5' mode='r' encoding='UTF-8'>
129s   ext.read_extended_alignment(path)
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.2zma99g5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta).
129s [20:11:18] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.2zma99g5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta).
129s [20:11:18] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.2zma99g5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta).
129s [20:11:18] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.2zma99g5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_11/A_11_0/hmmbuild.input.ri175x_u.fasta).
129s [20:11:18] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.vs49_72f.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.tht2zoie.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.jplace
129s [20:11:18] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.vs49_72f.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.tht2zoie.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.jplace
129s [20:11:18] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.vs49_72f.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.tht2zoie.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.jplace
129s [20:11:18] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.backbone.vs49_72f.fasta, tree_file:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.tree.tht2zoie.tre, info_file:/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.fasta, output:/tmp/sepp/output.3m0m_v1g/root/P_11/pplacer.extended.0._3zhg5y6.jplace
129s [20:11:18] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpd0sj2ul0/output_placement.json
129s [20:11:18] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpd0sj2ul0/output_placement.json
129s [20:11:18] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpd0sj2ul0/output_placement.json
129s [20:11:18] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpd0sj2ul0/output_placement.json
129s [20:11:18] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
129s [20:11:18] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
129s [20:11:18] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
129s [20:11:18] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
129s [20:11:18] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 21 cumulative time
129s [20:11:18] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 21 cumulative time
129s [20:11:18] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 21 cumulative time
129s [20:11:18] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 21 cumulative time
129s [20:11:18] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
129s [20:11:18] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
129s [20:11:18] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
129s [20:11:18] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
129s ok
129s test_seqnames_whitespaces (testSepp.Test.test_seqnames_whitespaces) ... [20:11:18] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp1pyc2n8j', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp1pyc2n8j', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp1pyc2n8j', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp1pyc2n8j', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 508 leaves
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 508 leaves
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 508 leaves
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 508 leaves
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
129s [20:11:18] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
129s [20:11:18] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
129s [20:11:18] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
129s [20:11:18] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
129s ok
129s test_id_collision_working (testUPP.Test.test_id_collision_working) ... [20:11:18] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpdd3sq_e7', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpdd3sq_e7', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpdd3sq_e7', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
129s [20:11:18] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpdd3sq_e7', config_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x73da468ed2b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
129s /usr/lib/python3/dist-packages/sepp/exhaustive_upp.py:192: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
129s   sequences.read_file_object(open(self.options.alignment_file.name))
129s ResourceWarning: Enable tracemalloc to get the object allocation traceback
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
129s [20:11:18] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 407 leaves
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 407 leaves
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 407 leaves
129s [20:11:18] algorithm.py (line 298):     INFO: Tree has 407 leaves
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
129s [20:11:18] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
129s [20:11:18] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
130s [20:11:19] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
130s [20:11:19] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
130s [20:11:19] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
130s [20:11:19] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
130s [20:11:19] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
130s [20:11:19] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
130s [20:11:19] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
130s [20:11:19] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
130s [20:11:19] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
130s [20:11:19] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
130s [20:11:19] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
130s [20:11:19] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
130s [20:11:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_0es52w10u.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/fragment_chunks/fragment_chunk_1ftrfgr_d.fasta, elim:99999999, filter:False, output:Piped
131s [20:11:20] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
131s [20:11:20] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
131s [20:11:20] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
131s [20:11:20] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ngt8nkzi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ngt8nkzi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ngt8nkzi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ngt8nkzi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.i17lpbc5.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.i17lpbc5.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.i17lpbc5.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.model.cuf4ojs7, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.i17lpbc5.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.rmg7sfs0.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.rmg7sfs0.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.rmg7sfs0.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.rmg7sfs0.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ay6jq4dx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ay6jq4dx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ay6jq4dx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.model.nosz7aad, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ay6jq4dx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.vr1sr81i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.vr1sr81i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.vr1sr81i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.vr1sr81i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.2039o6eq.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.2039o6eq.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.2039o6eq.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.model.ivyjf3zf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.2039o6eq.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.ffczohqf.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.ffczohqf.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.ffczohqf.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.ffczohqf.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.9l6qe61i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.9l6qe61i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.9l6qe61i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.model.k2_f6jbj, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.9l6qe61i.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.zgdz637_.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.zgdz637_.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.zgdz637_.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.zgdz637_.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.azfd_7lz.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.azfd_7lz.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.azfd_7lz.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.model.4e260pra, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.azfd_7lz.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.5iyc48fo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.5iyc48fo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.5iyc48fo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.5iyc48fo.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.7dltb540.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.7dltb540.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.7dltb540.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.model.o7q911e8, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.7dltb540.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.wzykn3da.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.wzykn3da.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.wzykn3da.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.wzykn3da.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.r9s9xqdx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.r9s9xqdx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.r9s9xqdx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.model.aybwcrw2, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.r9s9xqdx.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag._iu02pix.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag._iu02pix.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag._iu02pix.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag._iu02pix.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.6ta5orp8.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.6ta5orp8.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.6ta5orp8.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.model.pnb00k6t, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.6ta5orp8.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.lpfoppsl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.lpfoppsl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.lpfoppsl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.model.gkw65jhv, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.lpfoppsl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.ji8ry_92.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.ji8ry_92.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.ji8ry_92.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.ji8ry_92.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.bcttsiqc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.bcttsiqc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.bcttsiqc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.model.cqfnatpu, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.bcttsiqc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.0xoxxjnt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.0xoxxjnt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.0xoxxjnt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.0xoxxjnt.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag._bz3whzj.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag._bz3whzj.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag._bz3whzj.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.model.hi1xacao, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag._bz3whzj.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.y3lg5loc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.y3lg5loc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.y3lg5loc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.y3lg5loc.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.jkiol7yi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.jkiol7yi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.jkiol7yi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.model.jtr1uszi, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.jkiol7yi.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.3cwozvnl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.3cwozvnl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.3cwozvnl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.3cwozvnl.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag._gewzm1w.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag._gewzm1w.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag._gewzm1w.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.model.mpamk5t1, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag._gewzm1w.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.2kxp025j.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.2kxp025j.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.2kxp025j.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.2kxp025j.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.6n33_b0b.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.6n33_b0b.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.6n33_b0b.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.model.n350s0lf, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.6n33_b0b.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.7u4d56_7.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.7u4d56_7.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.7u4d56_7.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.7u4d56_7.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.13j9yf0m.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.13j9yf0m.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.13j9yf0m.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.model.z_wyorbc, fragments:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.13j9yf0m.fasta, trim:False, base_alignment:/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta
131s [20:11:20] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
131s [20:11:20] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
131s [20:11:20] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
131s [20:11:20] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
131s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta' mode='r' encoding='UTF-8'>
131s   self.read_filepath(base_alignment, "FASTA")
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.krti4ntc' mode='r' encoding='UTF-8'>
131s   ext.read_extended_alignment(path)
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.krti4ntc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.krti4ntc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.krti4ntc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.krti4ntc) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.1kv8c3o3' mode='r' encoding='UTF-8'>
131s   ext.read_extended_alignment(path)
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.1kv8c3o3) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.1kv8c3o3) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.1kv8c3o3) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.1kv8c3o3) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_0/hmmbuild.input.nsgk6_9o.fasta).
131s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta' mode='r' encoding='UTF-8'>
131s   self.read_filepath(base_alignment, "FASTA")
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.p_kqu9qn' mode='r' encoding='UTF-8'>
131s   ext.read_extended_alignment(path)
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.p_kqu9qn) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.p_kqu9qn) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.p_kqu9qn) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.p_kqu9qn) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.549r56hi' mode='r' encoding='UTF-8'>
131s   ext.read_extended_alignment(path)
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.549r56hi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.549r56hi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.549r56hi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.549r56hi) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_1/hmmbuild.input.akqw6_s7.fasta).
131s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta' mode='r' encoding='UTF-8'>
131s   self.read_filepath(base_alignment, "FASTA")
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.tyzhnijj' mode='r' encoding='UTF-8'>
131s   ext.read_extended_alignment(path)
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.tyzhnijj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.tyzhnijj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.tyzhnijj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.tyzhnijj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.results._y7v1d2l' mode='r' encoding='UTF-8'>
131s   ext.read_extended_alignment(path)
131s ResourceWarning: Enable tracemalloc to get the object allocation traceback
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.results._y7v1d2l) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.results._y7v1d2l) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.results._y7v1d2l) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
131s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/FC_0_2_1/hmmalign.results._y7v1d2l) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_2/hmmbuild.input.mv0znmnn.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.fynl4sip' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.fynl4sip) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.fynl4sip) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.fynl4sip) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.fynl4sip) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.hu_91t40' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.hu_91t40) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.hu_91t40) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.hu_91t40) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.hu_91t40) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_3/hmmbuild.input._tmecz30.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.z5d28jxo' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.z5d28jxo) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.z5d28jxo) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.z5d28jxo) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.z5d28jxo) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.tpw08qmp' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.tpw08qmp) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.tpw08qmp) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.tpw08qmp) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.tpw08qmp) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_4/hmmbuild.input.hpm6qtor.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.i4ftql8r' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.i4ftql8r) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.i4ftql8r) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.i4ftql8r) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.i4ftql8r) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.results.uvsp24t1' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.results.uvsp24t1) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.results.uvsp24t1) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.results.uvsp24t1) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/FC_0_5_1/hmmalign.results.uvsp24t1) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_5/hmmbuild.input.57sqxr2b.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.yh83f3qz' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.yh83f3qz) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.yh83f3qz) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.yh83f3qz) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.yh83f3qz) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.yiex3a3d' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.yiex3a3d) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.yiex3a3d) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.yiex3a3d) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.yiex3a3d) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_6/hmmbuild.input.prchlslk.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.223z2aq4' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.223z2aq4) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.223z2aq4) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.223z2aq4) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.223z2aq4) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_7/hmmbuild.input.r92bnpdg.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.o1_u0jbw' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.o1_u0jbw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.o1_u0jbw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.o1_u0jbw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.o1_u0jbw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.s4si72sb' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.s4si72sb) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.s4si72sb) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.s4si72sb) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.s4si72sb) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_8/hmmbuild.input.k4wlf5ah.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.whkexvc9' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.whkexvc9) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.whkexvc9) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.whkexvc9) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.whkexvc9) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.5j15vukw' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.5j15vukw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.5j15vukw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.5j15vukw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.5j15vukw) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_9/hmmbuild.input.ie48yh31.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.pdvkp567' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.pdvkp567) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.pdvkp567) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.pdvkp567) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.pdvkp567) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.fkuxj006' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.fkuxj006) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.fkuxj006) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.fkuxj006) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.fkuxj006) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_10/hmmbuild.input.w64v1x0u.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.zlah06j5' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.zlah06j5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.zlah06j5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.zlah06j5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.zlah06j5) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.results._lxb2zc_' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.results._lxb2zc_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.results._lxb2zc_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.results._lxb2zc_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/FC_0_11_1/hmmalign.results._lxb2zc_) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_11/hmmbuild.input.qf17e5_a.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.hp4g_h29' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.hp4g_h29) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.hp4g_h29) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.hp4g_h29) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.hp4g_h29) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.2scdx44o' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.2scdx44o) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.2scdx44o) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.2scdx44o) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.2scdx44o) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_12/hmmbuild.input.umgknxsn.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.7tlt4kc2' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.7tlt4kc2) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.7tlt4kc2) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.7tlt4kc2) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.7tlt4kc2) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.ecwzs3z7' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.ecwzs3z7) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.ecwzs3z7) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.ecwzs3z7) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.ecwzs3z7) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_13/hmmbuild.input.n5lnnky8.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta' mode='r' encoding='UTF-8'>
132s   self.read_filepath(base_alignment, "FASTA")
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.zzpkktkd' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.zzpkktkd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.zzpkktkd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.zzpkktkd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.zzpkktkd) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.1fw4ytyj' mode='r' encoding='UTF-8'>
132s   ext.read_extended_alignment(path)
132s ResourceWarning: Enable tracemalloc to get the object allocation traceback
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.1fw4ytyj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.1fw4ytyj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.1fw4ytyj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.1fw4ytyj) into base alignment (/tmp/sepp/output.3m0m_v1g/root/P_0/A_0_14/hmmbuild.input.0uthizbg.fasta).
132s [20:11:20] exhaustive_upp.py (line 304):     INFO: Generating output. 
132s [20:11:20] exhaustive_upp.py (line 304):     INFO: Generating output. 
132s [20:11:20] exhaustive_upp.py (line 304):     INFO: Generating output. 
132s [20:11:20] exhaustive_upp.py (line 304):     INFO: Generating output. 
132s [20:11:20] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpdd3sq_e7/output_alignment.fasta
132s [20:11:20] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpdd3sq_e7/output_alignment.fasta
132s [20:11:20] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpdd3sq_e7/output_alignment.fasta
132s [20:11:20] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpdd3sq_e7/output_alignment.fasta
132s [20:11:20] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpdd3sq_e7/output_insertion_columns.txt
132s [20:11:20] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpdd3sq_e7/output_insertion_columns.txt
132s [20:11:20] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpdd3sq_e7/output_insertion_columns.txt
132s [20:11:20] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpdd3sq_e7/output_insertion_columns.txt
132s [20:11:20] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpdd3sq_e7/output_alignment_masked.fasta
132s [20:11:20] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpdd3sq_e7/output_alignment_masked.fasta
132s [20:11:20] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpdd3sq_e7/output_alignment_masked.fasta
132s [20:11:20] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpdd3sq_e7/output_alignment_masked.fasta
132s [20:11:20] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
132s [20:11:20] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
132s [20:11:20] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
132s [20:11:20] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
132s [20:11:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
132s [20:11:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
132s [20:11:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
132s [20:11:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
132s [20:11:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
132s [20:11:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
132s [20:11:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
132s [20:11:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.3m0m_v1g
132s ok
132s 
132s ----------------------------------------------------------------------
132s Ran 21 tests in 25.297s
132s 
132s OK
132s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.H8zxaNp5nO/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>
132s autopkgtest [20:11:21]: test run-build-tests: -----------------------]
133s autopkgtest [20:11:22]: test run-build-tests:  - - - - - - - - - - results - - - - - - - - - -
133s run-build-tests      PASS
133s autopkgtest [20:11:22]: test test-simple-sepp-call: preparing testbed
133s Reading package lists...
134s Building dependency tree...
134s Reading state information...
134s Solving dependencies...
134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
135s autopkgtest [20:11:24]: test test-simple-sepp-call: [-----------------------
135s [20:11:24] config.py (line 371):     INFO: Seed number: 297834
135s [20:11:24] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
135s [20:11:24] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
135s [20:11:24] algorithm.py (line 157):     INFO: All options: Namespace(pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False', elim='10000', filters='True'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), exhaustive=Namespace(strategy='centroid', minsubsetsize='2', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), alignment_size=None, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=None, decomp_strategy='normal', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp.qKIxnJPtgM/test/unittest/data', config_file=None, tree_file=<_io.TextIOWrapper name='mock/pyrg/sate.tre' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='mock/pyrg/sate.tre.RAxML_info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='mock/pyrg/pyrg.even.fas' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0x79853ac6fb60>, checkpoint_interval=3600, seed=297834)
135s [20:11:24] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>
135s [20:11:24] algorithm.py (line 288):     INFO: Alignment has 65 sequences and 2054 sites
135s [20:11:24] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='mock/pyrg/sate.tre' mode='r' encoding='UTF-8'>
135s [20:11:24] algorithm.py (line 298):     INFO: Tree has 65 leaves
135s [20:11:24] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 6 placement: 6
135s [20:11:24] exhaustive.py (line 352):     INFO: Breaking into 15 placement subsets.
135s [20:11:24] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
135s [20:11:24] filemgr.py (line 129):     INFO: Root temp directory built: /tmp/sepp/output.xflxrho7
135s [20:11:24] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.input.ec_u1jve.fasta
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_0/A_0_0/hmmbuild.input.z4nu_f3s.fasta
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_2/A_2_0/hmmbuild.input.55g2ozm_.fasta
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_3/A_3_0/hmmbuild.input.ynhj4w0n.fasta
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.input.3m1cjlaj.fasta
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.input._koofgek.fasta
136s [20:11:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_6/A_6_0/hmmbuild.input.quu3qda0.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_7/A_7_0/hmmbuild.input.hxfrhns4.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_8/A_8_0/hmmbuild.input.x7ovy5yt.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.input.tpd3z_ze.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_10/A_10_0/hmmbuild.input.j552a5un.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.input.lwjnzcso.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_12/A_12_0/hmmbuild.input.13tl1j_7.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_13/A_13_0/hmmbuild.input.036vsd1z.fasta
137s [20:11:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.input.hoa1t39o.fasta
138s [20:11:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.model.gku68by3, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.e8ko6tep
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.model.gku68by3, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/FC_1_0_1/hmmsearch.results.9k_etll8
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/hmmbuild.model.c1w2emay, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.uq1bi6lc
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/hmmbuild.model.c1w2emay, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/FC_0_0_1/hmmsearch.results.e0c3hqec
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_2/A_2_0/hmmbuild.model.dj33eur_, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.qlbhxieh
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/hmmbuild.model.c_f240g2, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.ubm1z0y4
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_2/A_2_0/hmmbuild.model.dj33eur_, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_2/A_2_0/FC_2_0_1/hmmsearch.results.cirzzdwf
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/hmmbuild.model.c_f240g2, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/FC_3_0_1/hmmsearch.results.vfq23l_b
138s [20:11:27] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.model.u1aq5kzu, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.0jh8vfyr
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.model.u1aq5kzu, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/FC_4_0_1/hmmsearch.results.294mkn2s
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.model.vmgxehli, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.zq46dqi2
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.model.vmgxehli, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/FC_5_0_1/hmmsearch.results.s7e79ykt
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/hmmbuild.model.gywhqhyt, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.6gl6m_ow
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/hmmbuild.model.gywhqhyt, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/FC_6_0_1/hmmsearch.results.i02286jy
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_7/A_7_0/hmmbuild.model.ockozbop, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.p9s3xpkz
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_7/A_7_0/hmmbuild.model.ockozbop, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_7/A_7_0/FC_7_0_1/hmmsearch.results.7nzsemb4
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_8/A_8_0/hmmbuild.model.bq29iv9a, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.bf2j6kms
139s [20:11:28] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_8/A_8_0/hmmbuild.model.bq29iv9a, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_8/A_8_0/FC_8_0_1/hmmsearch.results.1dqfjt_w
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.model.q9vv20o6, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.c1518gdk
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.model.q9vv20o6, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/FC_9_0_1/hmmsearch.results.xkvhwvbl
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_10/A_10_0/hmmbuild.model.zo8e8x43, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.o7h0oj2v
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_10/A_10_0/hmmbuild.model.zo8e8x43, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_10/A_10_0/FC_10_0_1/hmmsearch.results.7daxmgg0
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.model.2r4cm_z9, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.h2vk2prk
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.model.2r4cm_z9, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/FC_11_0_1/hmmsearch.results.xsw67chv
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_12/A_12_0/hmmbuild.model._fksq7bo, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.022jri78
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_12/A_12_0/hmmbuild.model._fksq7bo, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_12/A_12_0/FC_12_0_1/hmmsearch.results.tuabgrwu
140s [20:11:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_13/A_13_0/hmmbuild.model.ucpzoax6, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.yru9iixt
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_13/A_13_0/hmmbuild.model.ucpzoax6, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_13/A_13_0/FC_13_0_1/hmmsearch.results.85c2lwnr
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.model.7c2_i0ur, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_0i9oxsipq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.756_f3n6
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.model.7c2_i0ur, fragments:/tmp/sepp/output.xflxrho7/fragment_chunks/fragment_chunk_1sg0mefcr.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/FC_14_0_1/hmmsearch.results.1afsbm4b
141s [20:11:30] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/hmmbuild.model.c1w2emay, fragments:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.njcdziz5.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/hmmbuild.input.z4nu_f3s.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.5wtsecea) into base alignment (/tmp/sepp/output.xflxrho7/root/P_0/A_0_0/hmmbuild.input.z4nu_f3s.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.model.gku68by3, fragments:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.8pqr4zck.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.input.ec_u1jve.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/hmmbuild.model.c_f240g2, fragments:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.sxpn6j2b.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/hmmbuild.input.ynhj4w0n.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.iiwovqi2) into base alignment (/tmp/sepp/output.xflxrho7/root/P_3/A_3_0/hmmbuild.input.ynhj4w0n.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.model.gku68by3, fragments:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.qkw9sinm.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.input.ec_u1jve.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.tb213hac) into base alignment (/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.input.ec_u1jve.fasta).
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.fsv9hv38) into base alignment (/tmp/sepp/output.xflxrho7/root/P_1/A_1_0/hmmbuild.input.ec_u1jve.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.model.u1aq5kzu, fragments:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.8q4tqf4g.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.input.3m1cjlaj.fasta
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.model.u1aq5kzu, fragments:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.07gx_9r5.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.input.3m1cjlaj.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.sck9gi0t) into base alignment (/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.input.3m1cjlaj.fasta).
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.8v82s5be) into base alignment (/tmp/sepp/output.xflxrho7/root/P_4/A_4_0/hmmbuild.input.3m1cjlaj.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.model.vmgxehli, fragments:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.urdeiyb9.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.input._koofgek.fasta
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/hmmbuild.model.gywhqhyt, fragments:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.y4sxrhpg.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/hmmbuild.input.quu3qda0.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.hss74b3z) into base alignment (/tmp/sepp/output.xflxrho7/root/P_6/A_6_0/hmmbuild.input.quu3qda0.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.model.vmgxehli, fragments:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.1984tjz9.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.input._koofgek.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.model.q9vv20o6, fragments:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/FC_9_0_0/hmmalign.frag.4zesgwbr.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.input.tpd3z_ze.fasta
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.model.q9vv20o6, fragments:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/FC_9_0_1/hmmalign.frag.u543qe2m.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.input.tpd3z_ze.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.7p96cylb) into base alignment (/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.input._koofgek.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.model.2r4cm_z9, fragments:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.8r62qd58.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.input.lwjnzcso.fasta
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.esf20oss) into base alignment (/tmp/sepp/output.xflxrho7/root/P_5/A_5_0/hmmbuild.input._koofgek.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.model.2r4cm_z9, fragments:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/FC_11_0_1/hmmalign.frag.1b32z7uh.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.input.lwjnzcso.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.model.7c2_i0ur, fragments:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag._d45l9zo.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.input.hoa1t39o.fasta
141s [20:11:30] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.model.7c2_i0ur, fragments:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/FC_14_0_1/hmmalign.frag.dlysrvfy.fasta, trim:False, base_alignment:/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.input.hoa1t39o.fasta
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/FC_9_0_0/hmmalign.results.yy7vwvjj) into base alignment (/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.input.tpd3z_ze.fasta).
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/FC_9_0_1/hmmalign.results.oqyzfv57) into base alignment (/tmp/sepp/output.xflxrho7/root/P_9/A_9_0/hmmbuild.input.tpd3z_ze.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_0/pplacer.backbone.tosuz306.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_0/pplacer.tree.uyk83kay.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_0/pplacer.extended.0.m6mtnb92.fasta, output:/tmp/sepp/output.xflxrho7/root/P_0/pplacer.extended.0.m6mtnb92.jplace
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.4rmzc6r2) into base alignment (/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.input.lwjnzcso.fasta).
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/FC_11_0_1/hmmalign.results.755g1qs1) into base alignment (/tmp/sepp/output.xflxrho7/root/P_11/A_11_0/hmmbuild.input.lwjnzcso.fasta).
141s [20:11:30] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.b58wymm1) into base alignment (/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.input.hoa1t39o.fasta).
141s [20:11:30] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/FC_14_0_1/hmmalign.results.4jksmwib) into base alignment (/tmp/sepp/output.xflxrho7/root/P_14/A_14_0/hmmbuild.input.hoa1t39o.fasta).
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_3/pplacer.backbone.wj0rhiz_.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_3/pplacer.tree.00lx4onq.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_3/pplacer.extended.0.iohz6r9b.fasta, output:/tmp/sepp/output.xflxrho7/root/P_3/pplacer.extended.0.iohz6r9b.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.backbone.9cdrt2is.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.tree.0zw8rz4k.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.extended.0.k0xx005x.fasta, output:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.extended.0.k0xx005x.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.backbone.dhcrtfwz.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.tree.sik9htgx.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.extended.1.99g0dyu9.fasta, output:/tmp/sepp/output.xflxrho7/root/P_1/pplacer.extended.1.99g0dyu9.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.backbone.g21xzeag.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.tree.wsjw18n_.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.extended.0.edmh5lp9.fasta, output:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.extended.0.edmh5lp9.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_6/pplacer.backbone.4dr02ej4.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_6/pplacer.tree.b6nae78d.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_6/pplacer.extended.0.50j8qh01.fasta, output:/tmp/sepp/output.xflxrho7/root/P_6/pplacer.extended.0.50j8qh01.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.backbone.y0rw59fd.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.tree.i_lkjboh.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.extended.1.blv644um.fasta, output:/tmp/sepp/output.xflxrho7/root/P_4/pplacer.extended.1.blv644um.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.backbone.24rutxii.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.tree.y70d38ru.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.extended.1.4t4g2n75.fasta, output:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.extended.1.4t4g2n75.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.backbone.km38adq3.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.tree.rdcqbzg3.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.extended.0.vv2478ic.fasta, output:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.extended.0.vv2478ic.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.backbone.m195hmml.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.tree.c849ly9t.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.extended.0.m5elcrxq.fasta, output:/tmp/sepp/output.xflxrho7/root/P_5/pplacer.extended.0.m5elcrxq.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.backbone.ss1c5hmq.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.tree.mlz8c3zu.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.extended.0.n_kvwwzm.fasta, output:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.extended.0.n_kvwwzm.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.backbone.asnvv9b_.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.tree.jy6pa0l0.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.extended.1.d4k9d5wo.fasta, output:/tmp/sepp/output.xflxrho7/root/P_9/pplacer.extended.1.d4k9d5wo.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.backbone.7mfb4ud3.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.tree.ectoidlt.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.extended.1._pby_wj8.fasta, output:/tmp/sepp/output.xflxrho7/root/P_11/pplacer.extended.1._pby_wj8.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.backbone.bvns4fcz.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.tree.6d4dtpte.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.extended.0.nlcp46bg.fasta, output:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.extended.0.nlcp46bg.jplace
141s [20:11:30] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.backbone.vk_arkg6.fasta, tree_file:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.tree.vu04e3do.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.extended.1.ambuiuvx.fasta, output:/tmp/sepp/output.xflxrho7/root/P_14/pplacer.extended.1.ambuiuvx.jplace
142s [20:11:31] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.qKIxnJPtgM/test/unittest/data/output_placement.json
142s [20:11:31] algorithm.py (line 213):     INFO: Current execution Finished in 6 seconds
142s [20:11:31] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 6 cumulative time
142s [20:11:31] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.xflxrho7
142s autopkgtest [20:11:31]: test test-simple-sepp-call: -----------------------]
143s autopkgtest [20:11:32]: test test-simple-sepp-call:  - - - - - - - - - - results - - - - - - - - - -
143s test-simple-sepp-call PASS
143s autopkgtest [20:11:32]: @@@@@@@@@@@@@@@@@@@@ summary
143s run-build-tests      PASS
143s test-simple-sepp-call PASS