0s autopkgtest [06:07:54]: starting date and time: 2026-02-10 06:07:54+0000
  0s autopkgtest [06:07:54]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [06:07:54]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rxe448_d/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade roary --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-24.secgroup --name adt-resolute-amd64-roary-20260210-060754-juju-7f2275-prod-proposed-migration-environment-20-b5ccb8d2-9a90-4140-8605-636e1c1c0815 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-roary-20260210-060754-juju-7f2275-prod-proposed-migration-environment-20-b5ccb8d2-9a90-4140-8605-636e1c1c0815 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 73s autopkgtest [06:09:07]: testbed dpkg architecture: amd64
 73s autopkgtest [06:09:07]: testbed apt version: 3.1.14
 73s autopkgtest [06:09:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 73s autopkgtest [06:09:07]: testbed release detected to be: None
 74s autopkgtest [06:09:08]: updating testbed package index (apt update)
 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1727 kB]
 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [178 kB]
 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB]
 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [219 kB]
 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6184 B]
 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1787 kB]
 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [792 kB]
 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.5 kB]
 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 76s Fetched 5197 kB in 1s (5586 kB/s)
 76s Reading package lists...
 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 77s Reading package lists...
 77s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 78s Calculating upgrade...
 78s The following package was automatically installed and is no longer required:
 78s   libpython3.13
 78s Use 'sudo apt autoremove' to remove it.
 78s The following NEW packages will be installed:
 78s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 78s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 78s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 78s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 78s The following packages will be upgraded:
 78s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 78s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 78s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 78s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 78s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbrotli1 libbsd0
 78s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 78s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 78s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 78s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 78s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 78s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 78s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 78s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 78s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 78s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 78s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 78s 91 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 237 MB of archives.
 78s After this operation, 339 MB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 78s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 78s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 78s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 78s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 78s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 78s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 78s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 78s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 78s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 78s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 78s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 78s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 78s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 78s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 78s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 78s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 79s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 79s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 79s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 79s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 79s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 79s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 79s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 79s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 79s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 79s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 79s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 79s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 79s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 79s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 79s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 79s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 79s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 79s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 79s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 79s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 79s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 79s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 79s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 79s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 79s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 79s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 79s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 79s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 79s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 79s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 79s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 79s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 79s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 79s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 79s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 79s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.2.0-3 [343 kB]
 79s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 79s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 79s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 79s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 79s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 79s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 79s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 79s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 79s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 79s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 79s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 86s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 87s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 87s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 87s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 87s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 87s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 87s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 87s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 88s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 88s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 88s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 88s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 88s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 88s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 88s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 88s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 88s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 88s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 88s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 88s Fetched 237 MB in 10s (23.6 MB/s)
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 89s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 89s Setting up debianutils (5.23.2build1) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 89s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 89s Setting up dash (0.5.12-12ubuntu3) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 89s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 89s Setting up findutils (4.10.0-3build2) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 89s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 89s Setting up sed (4.9-2build3) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 89s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 89s Setting up tar (1.35+dfsg-3.1build2) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ...
 89s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ...
 89s Setting up libattr1:amd64 (1:2.5.2-3build2) ...
 89s Selecting previously unselected package gcc-16-base:amd64.
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ...
 89s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ...
 89s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83962 files and directories currently installed.)
 89s Preparing to unpack .../libgcc-s1_16-20260208-1ubuntu1_amd64.deb ...
 89s Unpacking libgcc-s1:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ...
 89s Setting up libgcc-s1:amd64 (16-20260208-1ubuntu1) ...
 89s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83962 files and directories currently installed.)
 89s Preparing to unpack .../00-libbsd0_0.12.2-2build2_amd64.deb ...
 89s Unpacking libbsd0:amd64 (0.12.2-2build2) over (0.12.2-2build1) ...
 89s Preparing to unpack .../01-mawk_1.3.4.20260129-1_amd64.deb ...
 89s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ...
 90s Preparing to unpack .../02-libstdc++6_16-20260208-1ubuntu1_amd64.deb ...
 90s Unpacking libstdc++6:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ...
 90s Preparing to unpack .../03-libapt-pkg7.0_3.1.15_amd64.deb ...
 90s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ...
 90s Preparing to unpack .../04-apt_3.1.15_amd64.deb ...
 90s Unpacking apt (3.1.15) over (3.1.14) ...
 90s Preparing to unpack .../05-dbus-system-bus-common_1.16.2-2ubuntu3_all.deb ...
 90s Unpacking dbus-system-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../06-dbus-session-bus-common_1.16.2-2ubuntu3_all.deb ...
 90s Unpacking dbus-session-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../07-dbus-user-session_1.16.2-2ubuntu3_amd64.deb ...
 90s Unpacking dbus-user-session (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../08-dbus-daemon_1.16.2-2ubuntu3_amd64.deb ...
 90s Unpacking dbus-daemon (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../09-dbus-bin_1.16.2-2ubuntu3_amd64.deb ...
 90s Unpacking dbus-bin (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../10-dbus_1.16.2-2ubuntu3_amd64.deb ...
 90s Unpacking dbus (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../11-libdbus-1-3_1.16.2-2ubuntu3_amd64.deb ...
 90s Unpacking libdbus-1-3:amd64 (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
 90s Preparing to unpack .../12-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ...
 90s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
 90s Preparing to unpack .../13-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ...
 90s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
 90s Preparing to unpack .../14-ethtool_1%3a6.15-3build1_amd64.deb ...
 90s Unpacking ethtool (1:6.15-3build1) over (1:6.15-3) ...
 90s Preparing to unpack .../15-gir1.2-girepository-3.0_2.87.2-2_amd64.deb ...
 90s Unpacking gir1.2-girepository-3.0:amd64 (2.87.2-2) over (2.86.3-4) ...
 90s Preparing to unpack .../16-libgirepository-2.0-0_2.87.2-2_amd64.deb ...
 90s Unpacking libgirepository-2.0-0:amd64 (2.87.2-2) over (2.86.3-4) ...
 90s Preparing to unpack .../17-libatomic1_16-20260208-1ubuntu1_amd64.deb ...
 90s Unpacking libatomic1:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ...
 90s Preparing to unpack .../18-gir1.2-glib-2.0_2.87.2-2_amd64.deb ...
 90s Unpacking gir1.2-glib-2.0:amd64 (2.87.2-2) over (2.86.3-4) ...
 90s Preparing to unpack .../19-libglib2.0-0t64_2.87.2-2_amd64.deb ...
 90s Unpacking libglib2.0-0t64:amd64 (2.87.2-2) over (2.86.3-4) ...
 90s Preparing to unpack .../20-libbpf1_1%3a1.6.2-1build1_amd64.deb ...
 90s Unpacking libbpf1:amd64 (1:1.6.2-1build1) over (1:1.6.2-1) ...
 90s Preparing to unpack .../21-iptables_1.8.11-2ubuntu3_amd64.deb ...
 90s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 90s Preparing to unpack .../22-libip4tc2_1.8.11-2ubuntu3_amd64.deb ...
 90s Unpacking libip4tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 90s Preparing to unpack .../23-libip6tc2_1.8.11-2ubuntu3_amd64.deb ...
 90s Unpacking libip6tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 91s Preparing to unpack .../24-libnetfilter-conntrack3_1.1.1-1_amd64.deb ...
 91s Unpacking libnetfilter-conntrack3:amd64 (1.1.1-1) over (1.1.0-1build1) ...
 91s Preparing to unpack .../25-libxtables12_1.8.11-2ubuntu3_amd64.deb ...
 91s Unpacking libxtables12:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 91s Preparing to unpack .../26-iproute2_6.18.0-1ubuntu1_amd64.deb ...
 91s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ...
 91s Preparing to unpack .../27-less_668-1build1_amd64.deb ...
 91s Unpacking less (668-1build1) over (668-1) ...
 91s Preparing to unpack .../28-libcryptsetup12_2%3a2.8.0-1ubuntu3_amd64.deb ...
 91s Unpacking libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
 91s Preparing to unpack .../29-libglib2.0-data_2.87.2-2_all.deb ...
 91s Unpacking libglib2.0-data (2.87.2-2) over (2.86.3-4) ...
 91s Preparing to unpack .../30-libidn2-0_2.3.8-4build1_amd64.deb ...
 91s Unpacking libidn2-0:amd64 (2.3.8-4build1) over (2.3.8-4) ...
 91s Preparing to unpack .../31-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ...
 91s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ...
 91s Preparing to unpack .../32-python3-linkify-it_2.0.3-1ubuntu3_all.deb ...
 91s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ...
 91s Preparing to unpack .../33-python3-markdown-it_3.0.0-3build1_all.deb ...
 91s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ...
 91s Preparing to unpack .../34-shared-mime-info_2.4-5build3_amd64.deb ...
 91s Unpacking shared-mime-info (2.4-5build3) over (2.4-5build2) ...
 91s Preparing to unpack .../35-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ...
 91s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
 91s Preparing to unpack .../36-libdrm-common_2.4.131-1_all.deb ...
 91s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ...
 91s Preparing to unpack .../37-libdrm2_2.4.131-1_amd64.deb ...
 91s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ...
 91s Preparing to unpack .../38-libgdbm6t64_1.26-1build1_amd64.deb ...
 91s Unpacking libgdbm6t64:amd64 (1.26-1build1) over (1.26-1) ...
 91s Preparing to unpack .../39-libgpm2_1.20.7-12build1_amd64.deb ...
 91s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ...
 91s Preparing to unpack .../40-libjansson4_2.14-2build4_amd64.deb ...
 91s Unpacking libjansson4:amd64 (2.14-2build4) over (2.14-2build3) ...
 91s Preparing to unpack .../41-lsof_4.99.4+dfsg-2build2_amd64.deb ...
 91s Unpacking lsof (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ...
 91s Preparing to unpack .../42-liblsof0_4.99.4+dfsg-2build2_amd64.deb ...
 91s Unpacking liblsof0 (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ...
 91s Preparing to unpack .../43-libmaxminddb0_1.12.2-1build2_amd64.deb ...
 91s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ...
 91s Preparing to unpack .../44-libpcap0.8t64_1.10.5-2ubuntu3_amd64.deb ...
 91s Unpacking libpcap0.8t64:amd64 (1.10.5-2ubuntu3) over (1.10.5-2ubuntu2) ...
 91s Preparing to unpack .../45-pciutils_1%3a3.14.0-1build2_amd64.deb ...
 91s Unpacking pciutils (1:3.14.0-1build2) over (1:3.14.0-1build1) ...
 92s Preparing to unpack .../46-libpci3_1%3a3.14.0-1build2_amd64.deb ...
 92s Unpacking libpci3:amd64 (1:3.14.0-1build2) over (1:3.14.0-1build1) ...
 92s Preparing to unpack .../47-libsensors-config_1%3a3.6.2-2build1_all.deb ...
 92s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ...
 92s Preparing to unpack .../48-libsensors5_1%3a3.6.2-2build1_amd64.deb ...
 92s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ...
 92s Preparing to unpack .../49-libusb-1.0-0_2%3a1.0.29-2build1_amd64.deb ...
 92s Unpacking libusb-1.0-0:amd64 (2:1.0.29-2build1) over (2:1.0.29-2) ...
 92s Preparing to unpack .../50-libxau6_1%3a1.0.11-1build2_amd64.deb ...
 92s Unpacking libxau6:amd64 (1:1.0.11-1build2) over (1:1.0.11-1build1) ...
 92s Preparing to unpack .../51-libxkbcommon0_1.13.1-1_amd64.deb ...
 92s Unpacking libxkbcommon0:amd64 (1.13.1-1) over (1.12.3-1) ...
 92s Preparing to unpack .../52-man-db_2.13.1-1build1_amd64.deb ...
 92s Unpacking man-db (2.13.1-1build1) over (2.13.1-1) ...
 92s Preparing to unpack .../53-tcpdump_4.99.5-2ubuntu3_amd64.deb ...
 92s Unpacking tcpdump (4.99.5-2ubuntu3) over (4.99.5-2ubuntu2) ...
 92s Preparing to unpack .../54-wget_1.25.0-2ubuntu4_amd64.deb ...
 92s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ...
 92s Preparing to unpack .../55-ubuntu-standard_1.564_amd64.deb ...
 92s Unpacking ubuntu-standard (1.564) over (1.563) ...
 92s Preparing to unpack .../56-3cpio_0.14.0-1ubuntu1_amd64.deb ...
 92s Unpacking 3cpio (0.14.0-1ubuntu1) over (0.13.1-1ubuntu1) ...
 92s Preparing to unpack .../57-bpftool_7.7.0+6.19.0-3.3_amd64.deb ...
 92s Unpacking bpftool (7.7.0+6.19.0-3.3) over (7.7.0+6.18.0-9.9) ...
 92s Preparing to unpack .../58-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ...
 92s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
 92s Preparing to unpack .../59-cryptsetup-bin_2%3a2.8.0-1ubuntu3_amd64.deb ...
 92s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
 92s Preparing to unpack .../60-dracut-install_109-11ubuntu1_amd64.deb ...
 92s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ...
 92s Preparing to unpack .../61-hwdata_0.394-1build1_all.deb ...
 92s Unpacking hwdata (0.394-1build1) over (0.394-1) ...
 92s Preparing to unpack .../62-pnp.ids_0.394-1build1_all.deb ...
 92s Unpacking pnp.ids (0.394-1build1) over (0.394-1) ...
 92s Preparing to unpack .../63-libbrotli1_1.2.0-3_amd64.deb ...
 92s Unpacking libbrotli1:amd64 (1.2.0-3) over (1.1.0-2build6) ...
 92s Preparing to unpack .../64-libdrm-amdgpu1_2.4.131-1_amd64.deb ...
 92s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ...
 92s Preparing to unpack .../65-libevent-core-2.1-7t64_2.1.12-stable-10build2_amd64.deb ...
 92s Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) over (2.1.12-stable-10build1) ...
 92s Preparing to unpack .../66-libgdbm-compat4t64_1.26-1build1_amd64.deb ...
 92s Unpacking libgdbm-compat4t64:amd64 (1.26-1build1) over (1.26-1) ...
 92s Preparing to unpack .../67-libgudev-1.0-0_1%3a238-7build1_amd64.deb ...
 92s Unpacking libgudev-1.0-0:amd64 (1:238-7build1) over (1:238-7) ...
 92s Preparing to unpack .../68-libnpth0t64_1.8-3build1_amd64.deb ...
 92s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ...
 92s Preparing to unpack .../69-libonig5_6.9.10-1build1_amd64.deb ...
 92s Unpacking libonig5:amd64 (6.9.10-1build1) over (6.9.10-1) ...
 92s Selecting previously unselected package libpython3.14-minimal:amd64.
 92s Preparing to unpack .../70-libpython3.14-minimal_3.14.2-1_amd64.deb ...
 92s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ...
 92s Selecting previously unselected package libpython3.14-stdlib:amd64.
 92s Preparing to unpack .../71-libpython3.14-stdlib_3.14.2-1_amd64.deb ...
 92s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ...
 92s Selecting previously unselected package libpython3.14:amd64.
 92s Preparing to unpack .../72-libpython3.14_3.14.2-1_amd64.deb ...
 92s Unpacking libpython3.14:amd64 (3.14.2-1) ...
 92s Preparing to unpack .../73-libwrap0_7.6.q-36build2_amd64.deb ...
 92s Unpacking libwrap0:amd64 (7.6.q-36build2) over (7.6.q-36build1) ...
 92s Selecting previously unselected package linux-modules-6.19.0-3-generic.
 92s Preparing to unpack .../74-linux-modules-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
 92s Unpacking linux-modules-6.19.0-3-generic (6.19.0-3.3) ...
 93s Selecting previously unselected package linux-image-6.19.0-3-generic.
 93s Preparing to unpack .../75-linux-image-6.19.0-3-generic_6.19.0-3.3+1_amd64.deb ...
 93s Unpacking linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
 93s Preparing to unpack .../76-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ...
 93s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ...
 93s Preparing to unpack .../77-linux-generic_6.19.0-3.3_amd64.deb ...
 93s Unpacking linux-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
 93s Preparing to unpack .../78-linux-image-generic_6.19.0-3.3_amd64.deb ...
 93s Unpacking linux-image-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
 93s Preparing to unpack .../79-linux-virtual_6.19.0-3.3_amd64.deb ...
 93s Unpacking linux-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
 93s Preparing to unpack .../80-linux-image-virtual_6.19.0-3.3_amd64.deb ...
 93s Unpacking linux-image-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
 93s Preparing to unpack .../81-linux-headers-virtual_6.19.0-3.3_amd64.deb ...
 93s Unpacking linux-headers-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
 94s Selecting previously unselected package linux-headers-6.19.0-3.
 94s Preparing to unpack .../82-linux-headers-6.19.0-3_6.19.0-3.3_all.deb ...
 94s Unpacking linux-headers-6.19.0-3 (6.19.0-3.3) ...
 95s Selecting previously unselected package linux-headers-6.19.0-3-generic.
 95s Preparing to unpack .../83-linux-headers-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
 95s Unpacking linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
 95s Preparing to unpack .../84-linux-headers-generic_6.19.0-3.3_amd64.deb ...
 95s Unpacking linux-headers-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
 95s Preparing to unpack .../85-linux-perf_6.19.0-3.3_amd64.deb ...
 95s Unpacking linux-perf (6.19.0-3.3) over (6.18.0-9.9) ...
 96s Preparing to unpack .../86-linux-tools-common_6.19.0-3.3_all.deb ...
 96s Unpacking linux-tools-common (6.19.0-3.3) over (6.18.0-9.9) ...
 96s Selecting previously unselected package linux-tools-6.19.0-3.
 96s Preparing to unpack .../87-linux-tools-6.19.0-3_6.19.0-3.3_amd64.deb ...
 96s Unpacking linux-tools-6.19.0-3 (6.19.0-3.3) ...
 96s Selecting previously unselected package linux-tools-6.19.0-3-generic.
 96s Preparing to unpack .../88-linux-tools-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
 96s Unpacking linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
 96s Preparing to unpack .../89-patch_2.8-2build1_amd64.deb ...
 96s Unpacking patch (2.8-2build1) over (2.8-2) ...
 96s Preparing to unpack .../90-pollinate_4.33-4ubuntu5_all.deb ...
 96s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ...
 96s Preparing to unpack .../91-python3-referencing_0.36.2-1ubuntu2_all.deb ...
 96s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ...
 96s Preparing to unpack .../92-ubuntu-kernel-accessories_1.564_amd64.deb ...
 96s Unpacking ubuntu-kernel-accessories (1.564) over (1.563) ...
 96s Setting up libip4tc2:amd64 (1.8.11-2ubuntu3) ...
 96s Setting up 3cpio (0.14.0-1ubuntu1) ...
 96s Setting up libxau6:amd64 (1:1.0.11-1build2) ...
 96s Setting up libnpth0t64:amd64 (1.8-3build1) ...
 96s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ...
 96s Setting up ubuntu-kernel-accessories (1.564) ...
 96s Setting up libgpm2:amd64 (1.20.7-12build1) ...
 96s Setting up libgdbm6t64:amd64 (1.26-1build1) ...
 96s Setting up linux-modules-6.19.0-3-generic (6.19.0-3.3) ...
 97s Setting up libgdbm-compat4t64:amd64 (1.26-1build1) ...
 97s Setting up bpftool (7.7.0+6.19.0-3.3) ...
 97s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ...
 97s Setting up liblsof0 (4.99.4+dfsg-2build2) ...
 97s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ...
 97s Setting up libbrotli1:amd64 (1.2.0-3) ...
 97s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ...
 97s Setting up libsensors-config (1:3.6.2-2build1) ...
 97s Setting up less (668-1build1) ...
 97s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
 97s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
 97s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 97s amd64-microcode: microcode will be updated at next boot
 97s Setting up man-db (2.13.1-1build1) ...
 97s Updating database of manual pages ...
 99s man-db.service is a disabled or a static unit not running, not starting it.
 99s Setting up libjansson4:amd64 (2.14-2build4) ...
 99s Setting up libglib2.0-data (2.87.2-2) ...
 99s Setting up pollinate (4.33-4ubuntu5) ...
109s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
109s Setting up libwrap0:amd64 (7.6.q-36build2) ...
109s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
111s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
111s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
111s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
111s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
111s Setting up patch (2.8-2build1) ...
111s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
111s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
111s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
111s Setting up lsof (4.99.4+dfsg-2build2) ...
111s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
111s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
111s Setting up dracut-install (109-11ubuntu1) ...
111s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
111s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
111s Setting up pnp.ids (0.394-1build1) ...
111s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
111s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
111s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
111s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
111s Setting up mawk (1.3.4.20260129-1) ...
111s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
111s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
111s Setting up linux-image-virtual (6.19.0-3.3) ...
111s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
111s Setting up libbsd0:amd64 (0.12.2-2build2) ...
111s Setting up libdrm-common (2.4.131-1) ...
111s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
111s Setting up dbus-bin (1.16.2-2ubuntu3) ...
111s Setting up libonig5:amd64 (6.9.10-1build1) ...
111s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
111s Setting up ethtool (1:6.15-3build1) ...
111s Setting up python3-referencing (0.36.2-1ubuntu2) ...
111s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
111s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
111s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
111s Setting up tcpdump (4.99.5-2ubuntu3) ...
111s Setting up linux-image-generic (6.19.0-3.3) ...
111s Setting up wget (1.25.0-2ubuntu4) ...
111s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
111s Setting up iptables (1.8.11-2ubuntu3) ...
111s Setting up iproute2 (6.18.0-1ubuntu1) ...
111s Setting up linux-headers-generic (6.19.0-3.3) ...
111s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
111s Setting up hwdata (0.394-1build1) ...
111s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
111s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
111s No schema files found: doing nothing.
111s Setting up dbus (1.16.2-2ubuntu3) ...
111s A reboot is required to replace the running dbus-daemon.
111s Please reboot the system when convenient.
111s Setting up shared-mime-info (2.4-5build3) ...
112s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
112s Setting up pciutils (1:3.14.0-1build2) ...
112s Setting up python3-markdown-it (3.0.0-3build1) ...
112s Setting up libdrm2:amd64 (2.4.131-1) ...
112s Setting up libpython3.14:amd64 (3.14.2-1) ...
112s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
112s Setting up linux-tools-common (6.19.0-3.3) ...
112s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
112s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
112s Setting up apt (3.1.15) ...
113s Setting up linux-headers-virtual (6.19.0-3.3) ...
113s Setting up linux-generic (6.19.0-3.3) ...
113s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
113s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
113s Setting up ubuntu-standard (1.564) ...
113s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
113s Setting up linux-virtual (6.19.0-3.3) ...
113s Setting up linux-perf (6.19.0-3.3) ...
113s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
113s Processing triggers for debianutils (5.23.2build1) ...
113s Processing triggers for install-info (7.2-5) ...
113s Processing triggers for initramfs-tools (0.150ubuntu7) ...
113s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
118s Processing triggers for libc-bin (2.42-2ubuntu4) ...
118s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
118s /etc/kernel/postinst.d/initramfs-tools:
118s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
122s /etc/kernel/postinst.d/zz-update-grub:
122s Sourcing file `/etc/default/grub'
122s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
122s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
122s Generating grub configuration file ...
122s Found linux image: /boot/vmlinuz-6.19.0-3-generic
122s Found initrd image: /boot/initrd.img-6.19.0-3-generic
122s Found linux image: /boot/vmlinuz-6.18.0-9-generic
122s Found initrd image: /boot/initrd.img-6.18.0-9-generic
122s Warning: os-prober will not be executed to detect other bootable partitions.
122s Systems on them will not be added to the GRUB boot configuration.
122s Check GRUB_DISABLE_OS_PROBER documentation entry.
122s Adding boot menu entry for UEFI Firmware Settings ...
122s done
122s autopkgtest [06:09:56]: upgrading testbed (apt dist-upgrade and autopurge)
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s Calculating upgrade...
124s The following package was automatically installed and is no longer required:
124s   libpython3.13
124s Use 'sudo apt autoremove' to remove it.
124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
124s Solving dependencies...
124s The following packages will be REMOVED:
124s   libpython3.13*
124s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
124s After this operation, 7599 kB disk space will be freed.
124s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
124s Removing libpython3.13:amd64 (3.13.11-1) ...
124s Processing triggers for libc-bin (2.42-2ubuntu4) ...
125s autopkgtest [06:09:59]: rebooting testbed after setup commands that affected boot
153s autopkgtest [06:10:27]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
155s autopkgtest [06:10:29]: @@@@@@@@@@@@@@@@@@@@ apt-source roary
157s Get:1 http://ftpmaster.internal/ubuntu resolute/universe roary 3.13.0+dfsg-2build1 (dsc) [2531 B]
157s Get:2 http://ftpmaster.internal/ubuntu resolute/universe roary 3.13.0+dfsg-2build1 (tar) [207 kB]
157s Get:3 http://ftpmaster.internal/ubuntu resolute/universe roary 3.13.0+dfsg-2build1 (diff) [7404 B]
157s gpgv: Signature made Thu Jan 29 20:41:13 2026 UTC
157s gpgv:                using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809
157s gpgv: Can't check signature: No public key
157s dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-2build1.dsc: no acceptable signature found
157s autopkgtest [06:10:31]: testing package roary version 3.13.0+dfsg-2build1
157s autopkgtest [06:10:31]: build not needed
157s autopkgtest [06:10:31]: test run-unit-test: preparing testbed
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Solving dependencies...
158s The following NEW packages will be installed:
158s   bedtools bioperl cd-hit fasttree fontconfig fontconfig-config
158s   fonts-dejavu-core fonts-dejavu-mono libalgorithm-c3-perl
158s   libalgorithm-diff-perl libarray-utils-perl libb-hooks-op-check-perl
158s   libbio-perl-perl libblas3 libcairo2 libcapture-tiny-perl libclass-c3-perl
158s   libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl
158s   libclass-xsaccessor-perl libclone-perl libconst-fast-perl
158s   libdata-compare-perl libdata-optlist-perl libdata-stag-perl libdatrie1
158s   libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
158s   libdevel-overloadinfo-perl libdevel-stacktrace-perl libdigest-md5-file-perl
158s   libdist-checkconflicts-perl libdynaloader-functions-perl
158s   libencode-locale-perl libenv-path-perl libeval-closure-perl
158s   libexception-class-perl libfile-chdir-perl libfile-find-rule-perl
158s   libfile-grep-perl libfile-listing-perl libfile-slurper-perl
158s   libfile-which-perl libfindbin-libs-perl libfontconfig1 libgfortran5 libgomp1
158s   libgraph-perl libgraph-readwrite-perl libgraphite2-3 libharfbuzz0b
158s   libheap-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
158s   libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
158s   libhttp-negotiate-perl libice6 libio-all-perl libio-html-perl
158s   libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg-turbo8 libjpeg8
158s   liblapack3 liblerc4 liblog-log4perl-perl liblwp-mediatypes-perl
158s   liblwp-protocol-https-perl libmbedcrypto16 libmbedtls21 libmbedx509-7
158s   libmodule-implementation-perl libmodule-runtime-conflicts-perl
158s   libmodule-runtime-perl libmoose-perl libmro-compat-perl libncbi-vdb3
158s   libnet-http-perl libnet-ssleay-perl libnumber-compare-perl
158s   libpackage-deprecationmanager-perl libpackage-stash-perl
158s   libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0
158s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2
158s   libparams-classify-perl libparams-util-perl libparse-yapp-perl
158s   libpath-tiny-perl libperlio-utf8-strict-perl libpixman-1-0
158s   libset-object-perl libsharpyuv0 libsm6 libspiffy-perl libsub-exporter-perl
158s   libsub-exporter-progressive-perl libsub-install-perl libsub-uplevel-perl
158s   libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl
158s   libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl
158s   libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl
158s   libtext-glob-perl libthai-data libthai0 libtiff6 libtimedate-perl libtingea0
158s   libtk8.6 libtry-tiny-perl liburi-perl libwebp7 libwww-perl
158s   libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-parser-perl
158s   libxml-writer-perl libxrender1 libxss1 libxt6t64 mafft mcl ncbi-blast+
158s   ncbi-data ncbi-vdb-data parallel perl-openssl-defaults prank r-base-core
158s   r-cran-cli r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gtable
158s   r-cran-isoband r-cran-labeling r-cran-lifecycle r-cran-r6
158s   r-cran-rcolorbrewer r-cran-rlang r-cran-s7 r-cran-scales r-cran-vctrs
158s   r-cran-viridislite r-cran-withr roary unzip x11-common xdg-utils zip
158s 0 upgraded, 171 newly installed, 0 to remove and 0 not upgraded.
158s Need to get 90.3 MB of archives.
158s After this operation, 243 MB of additional disk space will be used.
158s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 bedtools amd64 2.31.1+dfsg-3 [580 kB]
158s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
158s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdata-stag-perl all 0.14-4 [364 kB]
158s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbio-perl-perl all 1.7.8-3 [2473 kB]
158s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libclass-data-inheritable-perl all 0.10-1 [8038 B]
158s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB]
158s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libexception-class-perl all 1.45-1 [28.6 kB]
158s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-simple-perl all 1.302219-1 [722 kB]
158s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-deep-perl all 1.205-1 [46.7 kB]
158s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libcapture-tiny-perl all 0.50-1 [20.7 kB]
158s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libalgorithm-diff-perl all 1.201-1 [41.8 kB]
158s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtext-diff-perl all 1.45-2 [25.6 kB]
158s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-differences-perl all 0.72-1 [15.6 kB]
158s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsub-uplevel-perl all 0.2800-3 [11.6 kB]
158s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-exception-perl all 0.43-3 [13.4 kB]
158s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-warn-perl all 0.37-2 [12.6 kB]
158s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-most-perl all 0.38-1 [21.5 kB]
158s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 bioperl all 1.7.8-3 [201 kB]
158s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
158s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 cd-hit amd64 4.8.1-4build1 [524 kB]
158s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
158s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
158s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
158s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
158s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
158s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libalgorithm-c3-perl all 0.11-2 [10.2 kB]
158s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarray-utils-perl all 0.5-3 [5862 B]
158s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libb-hooks-op-check-perl amd64 0.22-3build2 [9624 B]
158s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
158s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
158s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
158s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
158s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
158s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
158s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 libclass-c3-perl all 0.35-2 [18.4 kB]
158s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libparams-util-perl amd64 1.102-3build1 [21.4 kB]
158s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libsub-install-perl all 0.929-1 [9764 B]
158s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libdata-optlist-perl all 0.114-1 [9708 B]
158s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libdynaloader-functions-perl all 0.004-2 [11.5 kB]
158s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevel-callchecker-perl amd64 0.009-2 [14.2 kB]
158s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libparams-classify-perl amd64 0.015-2build6 [20.1 kB]
158s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libmodule-runtime-perl all 0.018-1 [15.2 kB]
158s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libtry-tiny-perl all 0.32-1 [21.2 kB]
158s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libmodule-implementation-perl all 0.09-2 [12.0 kB]
158s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libpackage-stash-perl all 0.40-1 [19.5 kB]
158s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 libclass-load-perl all 0.25-2 [12.7 kB]
158s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libclass-load-xs-perl amd64 0.10-2build5 [13.5 kB]
158s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libclass-xsaccessor-perl amd64 1.19-4build6 [33.8 kB]
158s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libclone-perl amd64 0.47-1 [10.7 kB]
158s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libsub-exporter-perl all 0.990-1 [49.0 kB]
158s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B]
158s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libconst-fast-perl all 0.014-2 [8034 B]
158s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libnumber-compare-perl all 0.03-3 [5974 B]
158s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libtext-glob-perl all 0.11-3 [6780 B]
158s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-find-rule-perl all 0.35-1build1 [24.0 kB]
158s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdata-compare-perl all 1.29-1 [17.9 kB]
158s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
158s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
158s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdevel-globaldestruction-perl all 0.14-4 [6114 B]
158s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmro-compat-perl all 0.15-2 [10.1 kB]
158s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdevel-overloadinfo-perl all 0.008-1 [7208 B]
158s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libencode-locale-perl all 1.05-3 [11.6 kB]
158s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB]
158s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libhttp-date-perl all 6.06-1 [10.2 kB]
158s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-listing-perl all 6.16-1 [11.3 kB]
158s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libhtml-tagset-perl all 3.24-1 [14.1 kB]
158s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 liburi-perl all 5.34-2build1 [100 kB]
158s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libhtml-parser-perl amd64 3.83-1build1 [86.2 kB]
158s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libhtml-tree-perl all 5.07-3 [200 kB]
158s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-html-perl all 1.004-3 [15.9 kB]
158s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB]
158s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libhttp-message-perl all 7.01-1ubuntu1 [76.1 kB]
158s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libhttp-cookies-perl all 6.11-1 [18.2 kB]
158s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libhttp-negotiate-perl all 6.01-2 [12.4 kB]
158s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 perl-openssl-defaults amd64 7build4 [6710 B]
158s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnet-ssleay-perl amd64 1.94-3 [318 kB]
158s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-socket-ssl-perl all 2.098-1 [205 kB]
158s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libnet-http-perl all 6.24-1build1 [21.7 kB]
158s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 liblwp-protocol-https-perl all 6.14-1 [9040 B]
158s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libwww-robotrules-perl all 6.02-1build1 [12.4 kB]
158s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwww-perl all 6.81-1build1 [141 kB]
158s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdigest-md5-file-perl all 0.08-2 [8822 B]
158s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdist-checkconflicts-perl all 0.11-2 [9942 B]
158s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libenv-path-perl all 0.19-4 [18.0 kB]
158s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libeval-closure-perl all 0.14-3 [10.1 kB]
158s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfile-chdir-perl all 0.1011-1 [10.8 kB]
158s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfile-grep-perl all 0.02-3 [8248 B]
158s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-slurper-perl all 0.014-1 [7660 B]
158s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-which-perl all 1.27-2 [12.5 kB]
158s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfindbin-libs-perl all 4.0.4-1 [24.9 kB]
158s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
158s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libheap-perl all 0.80-5 [33.8 kB]
159s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libset-object-perl amd64 1.43-1 [34.1 kB]
159s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgraph-perl all 1:0.9735-1 [100 kB]
159s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspiffy-perl all 0.46-1build1 [23.1 kB]
159s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libio-all-perl all 0.87-2 [61.3 kB]
159s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libparse-yapp-perl all 1.21-4 [38.0 kB]
159s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libxml-parser-perl amd64 2.47-1build4 [202 kB]
159s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxml-writer-perl all 0.900-2 [24.0 kB]
159s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgraph-readwrite-perl all 2.10-1 [44.0 kB]
159s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
159s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
159s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
159s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
159s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
159s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
159s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
159s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
159s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblog-log4perl-perl all 1.57-1 [345 kB]
159s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedcrypto16 amd64 3.6.5-0.1ubuntu2 [259 kB]
159s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedx509-7 amd64 3.6.5-0.1ubuntu2 [35.4 kB]
159s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedtls21 amd64 3.6.5-0.1ubuntu2 [130 kB]
159s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B]
159s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB]
159s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libpackage-stash-xs-perl amd64 0.30-1build5 [19.5 kB]
159s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmoose-perl amd64 2.2207-1build3 [717 kB]
159s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-vdb-data all 3.2.1+dfsg-2build1 [81.4 kB]
159s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2build1 [1242 kB]
159s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpadwalker-perl amd64 2.5-1build7 [15.6 kB]
159s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
159s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
159s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
159s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
159s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
159s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
159s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
159s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libpath-tiny-perl all 0.148-1 [47.9 kB]
159s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libperlio-utf8-strict-perl amd64 0.010-1build4 [11.1 kB]
159s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
159s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
159s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
159s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-file-perl all 1.995-1 [21.0 kB]
159s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-files-perl all 0.26-1 [19.2 kB]
159s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtest-output-perl all 1.036-1 [14.6 kB]
159s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtext-csv-perl all 2.06-1 [113 kB]
159s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
159s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
159s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
159s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtingea0 amd64 21-361-2build2 [55.4 kB]
159s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
159s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
159s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
159s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
159s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 mafft amd64 7.525-1 [841 kB]
159s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB]
159s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB]
160s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 prank amd64 250331-1 [346 kB]
160s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
160s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
160s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
160s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
160s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
160s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
160s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
161s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
161s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
161s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
161s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
161s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
161s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
161s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
161s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
161s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
161s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
161s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
161s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
161s Get:167 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
161s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 fasttree amd64 2.1.11-2build1 [188 kB]
161s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 mcl amd64 1:22-282+ds-4build1 [541 kB]
161s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 parallel all 20240222+ds-2build1 [2116 kB]
161s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 roary all 3.13.0+dfsg-2build1 [180 kB]
161s Preconfiguring packages ...
161s Fetched 90.3 MB in 3s (31.3 MB/s)
161s Selecting previously unselected package bedtools.
161s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125269 files and directories currently installed.)
161s Preparing to unpack .../000-bedtools_2.31.1+dfsg-3_amd64.deb ...
161s Unpacking bedtools (2.31.1+dfsg-3) ...
161s Selecting previously unselected package libio-string-perl.
161s Preparing to unpack .../001-libio-string-perl_1.08-4_all.deb ...
161s Unpacking libio-string-perl (1.08-4) ...
162s Selecting previously unselected package libdata-stag-perl.
162s Preparing to unpack .../002-libdata-stag-perl_0.14-4_all.deb ...
162s Unpacking libdata-stag-perl (0.14-4) ...
162s Selecting previously unselected package libbio-perl-perl.
162s Preparing to unpack .../003-libbio-perl-perl_1.7.8-3_all.deb ...
162s Unpacking libbio-perl-perl (1.7.8-3) ...
162s Selecting previously unselected package libclass-data-inheritable-perl.
162s Preparing to unpack .../004-libclass-data-inheritable-perl_0.10-1_all.deb ...
162s Unpacking libclass-data-inheritable-perl (0.10-1) ...
162s Selecting previously unselected package libdevel-stacktrace-perl.
162s Preparing to unpack .../005-libdevel-stacktrace-perl_2.0500-1_all.deb ...
162s Unpacking libdevel-stacktrace-perl (2.0500-1) ...
162s Selecting previously unselected package libexception-class-perl.
162s Preparing to unpack .../006-libexception-class-perl_1.45-1_all.deb ...
162s Unpacking libexception-class-perl (1.45-1) ...
162s Selecting previously unselected package libtest-simple-perl.
162s Preparing to unpack .../007-libtest-simple-perl_1.302219-1_all.deb ...
162s Unpacking libtest-simple-perl (1.302219-1) ...
162s Selecting previously unselected package libtest-deep-perl.
162s Preparing to unpack .../008-libtest-deep-perl_1.205-1_all.deb ...
162s Unpacking libtest-deep-perl (1.205-1) ...
162s Selecting previously unselected package libcapture-tiny-perl.
162s Preparing to unpack .../009-libcapture-tiny-perl_0.50-1_all.deb ...
162s Unpacking libcapture-tiny-perl (0.50-1) ...
162s Selecting previously unselected package libalgorithm-diff-perl.
162s Preparing to unpack .../010-libalgorithm-diff-perl_1.201-1_all.deb ...
162s Unpacking libalgorithm-diff-perl (1.201-1) ...
162s Selecting previously unselected package libtext-diff-perl.
162s Preparing to unpack .../011-libtext-diff-perl_1.45-2_all.deb ...
162s Unpacking libtext-diff-perl (1.45-2) ...
162s Selecting previously unselected package libtest-differences-perl.
162s Preparing to unpack .../012-libtest-differences-perl_0.72-1_all.deb ...
162s Unpacking libtest-differences-perl (0.72-1) ...
162s Selecting previously unselected package libsub-uplevel-perl.
162s Preparing to unpack .../013-libsub-uplevel-perl_0.2800-3_all.deb ...
162s Unpacking libsub-uplevel-perl (0.2800-3) ...
162s Selecting previously unselected package libtest-exception-perl.
162s Preparing to unpack .../014-libtest-exception-perl_0.43-3_all.deb ...
162s Unpacking libtest-exception-perl (0.43-3) ...
162s Selecting previously unselected package libtest-warn-perl.
162s Preparing to unpack .../015-libtest-warn-perl_0.37-2_all.deb ...
162s Unpacking libtest-warn-perl (0.37-2) ...
162s Selecting previously unselected package libtest-most-perl.
162s Preparing to unpack .../016-libtest-most-perl_0.38-1_all.deb ...
162s Unpacking libtest-most-perl (0.38-1) ...
162s Selecting previously unselected package bioperl.
162s Preparing to unpack .../017-bioperl_1.7.8-3_all.deb ...
162s Unpacking bioperl (1.7.8-3) ...
162s Selecting previously unselected package libgomp1:amd64.
162s Preparing to unpack .../018-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
162s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
162s Selecting previously unselected package cd-hit.
162s Preparing to unpack .../019-cd-hit_4.8.1-4build1_amd64.deb ...
162s Unpacking cd-hit (4.8.1-4build1) ...
162s Selecting previously unselected package fonts-dejavu-mono.
162s Preparing to unpack .../020-fonts-dejavu-mono_2.37-8build1_all.deb ...
162s Unpacking fonts-dejavu-mono (2.37-8build1) ...
162s Selecting previously unselected package fonts-dejavu-core.
162s Preparing to unpack .../021-fonts-dejavu-core_2.37-8build1_all.deb ...
162s Unpacking fonts-dejavu-core (2.37-8build1) ...
162s Selecting previously unselected package fontconfig-config.
162s Preparing to unpack .../022-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
162s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package libfontconfig1:amd64.
162s Preparing to unpack .../023-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
162s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package fontconfig.
162s Preparing to unpack .../024-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
162s Unpacking fontconfig (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package libalgorithm-c3-perl.
162s Preparing to unpack .../025-libalgorithm-c3-perl_0.11-2_all.deb ...
162s Unpacking libalgorithm-c3-perl (0.11-2) ...
162s Selecting previously unselected package libarray-utils-perl.
162s Preparing to unpack .../026-libarray-utils-perl_0.5-3_all.deb ...
162s Unpacking libarray-utils-perl (0.5-3) ...
162s Selecting previously unselected package libb-hooks-op-check-perl:amd64.
162s Preparing to unpack .../027-libb-hooks-op-check-perl_0.22-3build2_amd64.deb ...
162s Unpacking libb-hooks-op-check-perl:amd64 (0.22-3build2) ...
162s Selecting previously unselected package libblas3:amd64.
162s Preparing to unpack .../028-libblas3_3.12.1-7ubuntu1_amd64.deb ...
162s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
162s Selecting previously unselected package libpixman-1-0:amd64.
162s Preparing to unpack .../029-libpixman-1-0_0.46.4-1_amd64.deb ...
162s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
162s Selecting previously unselected package libxcb-render0:amd64.
162s Preparing to unpack .../030-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
162s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
162s Selecting previously unselected package libxcb-shm0:amd64.
162s Preparing to unpack .../031-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
162s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
162s Selecting previously unselected package libxrender1:amd64.
162s Preparing to unpack .../032-libxrender1_1%3a0.9.12-1_amd64.deb ...
162s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
162s Selecting previously unselected package libcairo2:amd64.
162s Preparing to unpack .../033-libcairo2_1.18.4-3_amd64.deb ...
162s Unpacking libcairo2:amd64 (1.18.4-3) ...
162s Selecting previously unselected package libclass-c3-perl.
162s Preparing to unpack .../034-libclass-c3-perl_0.35-2_all.deb ...
162s Unpacking libclass-c3-perl (0.35-2) ...
162s Selecting previously unselected package libparams-util-perl.
162s Preparing to unpack .../035-libparams-util-perl_1.102-3build1_amd64.deb ...
162s Unpacking libparams-util-perl (1.102-3build1) ...
162s Selecting previously unselected package libsub-install-perl.
162s Preparing to unpack .../036-libsub-install-perl_0.929-1_all.deb ...
162s Unpacking libsub-install-perl (0.929-1) ...
162s Selecting previously unselected package libdata-optlist-perl.
162s Preparing to unpack .../037-libdata-optlist-perl_0.114-1_all.deb ...
162s Unpacking libdata-optlist-perl (0.114-1) ...
162s Selecting previously unselected package libdynaloader-functions-perl.
162s Preparing to unpack .../038-libdynaloader-functions-perl_0.004-2_all.deb ...
162s Unpacking libdynaloader-functions-perl (0.004-2) ...
162s Selecting previously unselected package libdevel-callchecker-perl:amd64.
162s Preparing to unpack .../039-libdevel-callchecker-perl_0.009-2_amd64.deb ...
162s Unpacking libdevel-callchecker-perl:amd64 (0.009-2) ...
162s Selecting previously unselected package libparams-classify-perl:amd64.
162s Preparing to unpack .../040-libparams-classify-perl_0.015-2build6_amd64.deb ...
162s Unpacking libparams-classify-perl:amd64 (0.015-2build6) ...
162s Selecting previously unselected package libmodule-runtime-perl.
162s Preparing to unpack .../041-libmodule-runtime-perl_0.018-1_all.deb ...
162s Unpacking libmodule-runtime-perl (0.018-1) ...
162s Selecting previously unselected package libtry-tiny-perl.
162s Preparing to unpack .../042-libtry-tiny-perl_0.32-1_all.deb ...
162s Unpacking libtry-tiny-perl (0.32-1) ...
162s Selecting previously unselected package libmodule-implementation-perl.
162s Preparing to unpack .../043-libmodule-implementation-perl_0.09-2_all.deb ...
162s Unpacking libmodule-implementation-perl (0.09-2) ...
162s Selecting previously unselected package libpackage-stash-perl.
162s Preparing to unpack .../044-libpackage-stash-perl_0.40-1_all.deb ...
162s Unpacking libpackage-stash-perl (0.40-1) ...
162s Selecting previously unselected package libclass-load-perl.
162s Preparing to unpack .../045-libclass-load-perl_0.25-2_all.deb ...
162s Unpacking libclass-load-perl (0.25-2) ...
162s Selecting previously unselected package libclass-load-xs-perl.
162s Preparing to unpack .../046-libclass-load-xs-perl_0.10-2build5_amd64.deb ...
162s Unpacking libclass-load-xs-perl (0.10-2build5) ...
162s Selecting previously unselected package libclass-xsaccessor-perl.
162s Preparing to unpack .../047-libclass-xsaccessor-perl_1.19-4build6_amd64.deb ...
162s Unpacking libclass-xsaccessor-perl (1.19-4build6) ...
162s Selecting previously unselected package libclone-perl:amd64.
162s Preparing to unpack .../048-libclone-perl_0.47-1_amd64.deb ...
162s Unpacking libclone-perl:amd64 (0.47-1) ...
162s Selecting previously unselected package libsub-exporter-perl.
162s Preparing to unpack .../049-libsub-exporter-perl_0.990-1_all.deb ...
162s Unpacking libsub-exporter-perl (0.990-1) ...
163s Selecting previously unselected package libsub-exporter-progressive-perl.
163s Preparing to unpack .../050-libsub-exporter-progressive-perl_0.001013-3_all.deb ...
163s Unpacking libsub-exporter-progressive-perl (0.001013-3) ...
163s Selecting previously unselected package libconst-fast-perl.
163s Preparing to unpack .../051-libconst-fast-perl_0.014-2_all.deb ...
163s Unpacking libconst-fast-perl (0.014-2) ...
163s Selecting previously unselected package libnumber-compare-perl.
163s Preparing to unpack .../052-libnumber-compare-perl_0.03-3_all.deb ...
163s Unpacking libnumber-compare-perl (0.03-3) ...
163s Selecting previously unselected package libtext-glob-perl.
163s Preparing to unpack .../053-libtext-glob-perl_0.11-3_all.deb ...
163s Unpacking libtext-glob-perl (0.11-3) ...
163s Selecting previously unselected package libfile-find-rule-perl.
163s Preparing to unpack .../054-libfile-find-rule-perl_0.35-1build1_all.deb ...
163s Unpacking libfile-find-rule-perl (0.35-1build1) ...
163s Selecting previously unselected package libdata-compare-perl.
163s Preparing to unpack .../055-libdata-compare-perl_1.29-1_all.deb ...
163s Unpacking libdata-compare-perl (1.29-1) ...
163s Selecting previously unselected package libdatrie1:amd64.
163s Preparing to unpack .../056-libdatrie1_0.2.14-1_amd64.deb ...
163s Unpacking libdatrie1:amd64 (0.2.14-1) ...
163s Selecting previously unselected package libdeflate0:amd64.
163s Preparing to unpack .../057-libdeflate0_1.23-2build1_amd64.deb ...
163s Unpacking libdeflate0:amd64 (1.23-2build1) ...
163s Selecting previously unselected package libdevel-globaldestruction-perl.
163s Preparing to unpack .../058-libdevel-globaldestruction-perl_0.14-4_all.deb ...
163s Unpacking libdevel-globaldestruction-perl (0.14-4) ...
163s Selecting previously unselected package libmro-compat-perl.
163s Preparing to unpack .../059-libmro-compat-perl_0.15-2_all.deb ...
163s Unpacking libmro-compat-perl (0.15-2) ...
163s Selecting previously unselected package libdevel-overloadinfo-perl.
163s Preparing to unpack .../060-libdevel-overloadinfo-perl_0.008-1_all.deb ...
163s Unpacking libdevel-overloadinfo-perl (0.008-1) ...
163s Selecting previously unselected package libencode-locale-perl.
163s Preparing to unpack .../061-libencode-locale-perl_1.05-3_all.deb ...
163s Unpacking libencode-locale-perl (1.05-3) ...
163s Selecting previously unselected package libtimedate-perl.
163s Preparing to unpack .../062-libtimedate-perl_2.3300-2_all.deb ...
163s Unpacking libtimedate-perl (2.3300-2) ...
163s Selecting previously unselected package libhttp-date-perl.
163s Preparing to unpack .../063-libhttp-date-perl_6.06-1_all.deb ...
163s Unpacking libhttp-date-perl (6.06-1) ...
163s Selecting previously unselected package libfile-listing-perl.
163s Preparing to unpack .../064-libfile-listing-perl_6.16-1_all.deb ...
163s Unpacking libfile-listing-perl (6.16-1) ...
163s Selecting previously unselected package libhtml-tagset-perl.
163s Preparing to unpack .../065-libhtml-tagset-perl_3.24-1_all.deb ...
163s Unpacking libhtml-tagset-perl (3.24-1) ...
163s Selecting previously unselected package liburi-perl.
163s Preparing to unpack .../066-liburi-perl_5.34-2build1_all.deb ...
163s Unpacking liburi-perl (5.34-2build1) ...
163s Selecting previously unselected package libhtml-parser-perl:amd64.
163s Preparing to unpack .../067-libhtml-parser-perl_3.83-1build1_amd64.deb ...
163s Unpacking libhtml-parser-perl:amd64 (3.83-1build1) ...
163s Selecting previously unselected package libhtml-tree-perl.
163s Preparing to unpack .../068-libhtml-tree-perl_5.07-3_all.deb ...
163s Unpacking libhtml-tree-perl (5.07-3) ...
163s Selecting previously unselected package libio-html-perl.
163s Preparing to unpack .../069-libio-html-perl_1.004-3_all.deb ...
163s Unpacking libio-html-perl (1.004-3) ...
163s Selecting previously unselected package liblwp-mediatypes-perl.
163s Preparing to unpack .../070-liblwp-mediatypes-perl_6.04-2_all.deb ...
163s Unpacking liblwp-mediatypes-perl (6.04-2) ...
163s Selecting previously unselected package libhttp-message-perl.
163s Preparing to unpack .../071-libhttp-message-perl_7.01-1ubuntu1_all.deb ...
163s Unpacking libhttp-message-perl (7.01-1ubuntu1) ...
163s Selecting previously unselected package libhttp-cookies-perl.
163s Preparing to unpack .../072-libhttp-cookies-perl_6.11-1_all.deb ...
163s Unpacking libhttp-cookies-perl (6.11-1) ...
163s Selecting previously unselected package libhttp-negotiate-perl.
163s Preparing to unpack .../073-libhttp-negotiate-perl_6.01-2_all.deb ...
163s Unpacking libhttp-negotiate-perl (6.01-2) ...
163s Selecting previously unselected package perl-openssl-defaults:amd64.
163s Preparing to unpack .../074-perl-openssl-defaults_7build4_amd64.deb ...
163s Unpacking perl-openssl-defaults:amd64 (7build4) ...
163s Selecting previously unselected package libnet-ssleay-perl:amd64.
163s Preparing to unpack .../075-libnet-ssleay-perl_1.94-3_amd64.deb ...
163s Unpacking libnet-ssleay-perl:amd64 (1.94-3) ...
163s Selecting previously unselected package libio-socket-ssl-perl.
163s Preparing to unpack .../076-libio-socket-ssl-perl_2.098-1_all.deb ...
163s Unpacking libio-socket-ssl-perl (2.098-1) ...
163s Selecting previously unselected package libnet-http-perl.
163s Preparing to unpack .../077-libnet-http-perl_6.24-1build1_all.deb ...
163s Unpacking libnet-http-perl (6.24-1build1) ...
163s Selecting previously unselected package liblwp-protocol-https-perl.
163s Preparing to unpack .../078-liblwp-protocol-https-perl_6.14-1_all.deb ...
163s Unpacking liblwp-protocol-https-perl (6.14-1) ...
163s Selecting previously unselected package libwww-robotrules-perl.
163s Preparing to unpack .../079-libwww-robotrules-perl_6.02-1build1_all.deb ...
163s Unpacking libwww-robotrules-perl (6.02-1build1) ...
163s Selecting previously unselected package libwww-perl.
163s Preparing to unpack .../080-libwww-perl_6.81-1build1_all.deb ...
163s Unpacking libwww-perl (6.81-1build1) ...
163s Selecting previously unselected package libdigest-md5-file-perl.
163s Preparing to unpack .../081-libdigest-md5-file-perl_0.08-2_all.deb ...
163s Unpacking libdigest-md5-file-perl (0.08-2) ...
163s Selecting previously unselected package libdist-checkconflicts-perl.
163s Preparing to unpack .../082-libdist-checkconflicts-perl_0.11-2_all.deb ...
163s Unpacking libdist-checkconflicts-perl (0.11-2) ...
163s Selecting previously unselected package libenv-path-perl.
163s Preparing to unpack .../083-libenv-path-perl_0.19-4_all.deb ...
163s Unpacking libenv-path-perl (0.19-4) ...
163s Selecting previously unselected package libeval-closure-perl.
163s Preparing to unpack .../084-libeval-closure-perl_0.14-3_all.deb ...
163s Unpacking libeval-closure-perl (0.14-3) ...
163s Selecting previously unselected package libfile-chdir-perl.
163s Preparing to unpack .../085-libfile-chdir-perl_0.1011-1_all.deb ...
163s Unpacking libfile-chdir-perl (0.1011-1) ...
163s Selecting previously unselected package libfile-grep-perl.
163s Preparing to unpack .../086-libfile-grep-perl_0.02-3_all.deb ...
163s Unpacking libfile-grep-perl (0.02-3) ...
163s Selecting previously unselected package libfile-slurper-perl.
163s Preparing to unpack .../087-libfile-slurper-perl_0.014-1_all.deb ...
163s Unpacking libfile-slurper-perl (0.014-1) ...
163s Selecting previously unselected package libfile-which-perl.
163s Preparing to unpack .../088-libfile-which-perl_1.27-2_all.deb ...
163s Unpacking libfile-which-perl (1.27-2) ...
163s Selecting previously unselected package libfindbin-libs-perl.
163s Preparing to unpack .../089-libfindbin-libs-perl_4.0.4-1_all.deb ...
163s Unpacking libfindbin-libs-perl (4.0.4-1) ...
163s Selecting previously unselected package libgfortran5:amd64.
163s Preparing to unpack .../090-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libheap-perl.
163s Preparing to unpack .../091-libheap-perl_0.80-5_all.deb ...
163s Unpacking libheap-perl (0.80-5) ...
163s Selecting previously unselected package libset-object-perl.
163s Preparing to unpack .../092-libset-object-perl_1.43-1_amd64.deb ...
163s Unpacking libset-object-perl (1.43-1) ...
163s Selecting previously unselected package libgraph-perl.
163s Preparing to unpack .../093-libgraph-perl_1%3a0.9735-1_all.deb ...
163s Unpacking libgraph-perl (1:0.9735-1) ...
163s Selecting previously unselected package libspiffy-perl.
163s Preparing to unpack .../094-libspiffy-perl_0.46-1build1_all.deb ...
163s Unpacking libspiffy-perl (0.46-1build1) ...
163s Selecting previously unselected package libio-all-perl.
163s Preparing to unpack .../095-libio-all-perl_0.87-2_all.deb ...
163s Unpacking libio-all-perl (0.87-2) ...
163s Selecting previously unselected package libparse-yapp-perl.
163s Preparing to unpack .../096-libparse-yapp-perl_1.21-4_all.deb ...
163s Unpacking libparse-yapp-perl (1.21-4) ...
163s Selecting previously unselected package libxml-parser-perl.
163s Preparing to unpack .../097-libxml-parser-perl_2.47-1build4_amd64.deb ...
163s Unpacking libxml-parser-perl (2.47-1build4) ...
163s Selecting previously unselected package libxml-writer-perl.
163s Preparing to unpack .../098-libxml-writer-perl_0.900-2_all.deb ...
163s Unpacking libxml-writer-perl (0.900-2) ...
163s Selecting previously unselected package libgraph-readwrite-perl.
163s Preparing to unpack .../099-libgraph-readwrite-perl_2.10-1_all.deb ...
163s Unpacking libgraph-readwrite-perl (2.10-1) ...
163s Selecting previously unselected package libgraphite2-3:amd64.
163s Preparing to unpack .../100-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
163s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
163s Selecting previously unselected package libharfbuzz0b:amd64.
163s Preparing to unpack .../101-libharfbuzz0b_12.3.2-1_amd64.deb ...
163s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
163s Selecting previously unselected package x11-common.
163s Preparing to unpack .../102-x11-common_1%3a7.7+24ubuntu1_all.deb ...
163s Unpacking x11-common (1:7.7+24ubuntu1) ...
163s Selecting previously unselected package libice6:amd64.
163s Preparing to unpack .../103-libice6_2%3a1.1.1-1build1_amd64.deb ...
163s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
163s Selecting previously unselected package libjpeg-turbo8:amd64.
163s Preparing to unpack .../104-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
163s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
163s Selecting previously unselected package libjpeg8:amd64.
163s Preparing to unpack .../105-libjpeg8_8c-2ubuntu12_amd64.deb ...
163s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ...
163s Selecting previously unselected package liblapack3:amd64.
163s Preparing to unpack .../106-liblapack3_3.12.1-7ubuntu1_amd64.deb ...
163s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ...
163s Selecting previously unselected package liblerc4:amd64.
163s Preparing to unpack .../107-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ...
163s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
163s Selecting previously unselected package liblog-log4perl-perl.
163s Preparing to unpack .../108-liblog-log4perl-perl_1.57-1_all.deb ...
163s Unpacking liblog-log4perl-perl (1.57-1) ...
163s Selecting previously unselected package libmbedcrypto16:amd64.
164s Preparing to unpack .../109-libmbedcrypto16_3.6.5-0.1ubuntu2_amd64.deb ...
164s Unpacking libmbedcrypto16:amd64 (3.6.5-0.1ubuntu2) ...
164s Selecting previously unselected package libmbedx509-7:amd64.
164s Preparing to unpack .../110-libmbedx509-7_3.6.5-0.1ubuntu2_amd64.deb ...
164s Unpacking libmbedx509-7:amd64 (3.6.5-0.1ubuntu2) ...
164s Selecting previously unselected package libmbedtls21:amd64.
164s Preparing to unpack .../111-libmbedtls21_3.6.5-0.1ubuntu2_amd64.deb ...
164s Unpacking libmbedtls21:amd64 (3.6.5-0.1ubuntu2) ...
164s Selecting previously unselected package libmodule-runtime-conflicts-perl.
164s Preparing to unpack .../112-libmodule-runtime-conflicts-perl_0.003-2_all.deb ...
164s Unpacking libmodule-runtime-conflicts-perl (0.003-2) ...
164s Selecting previously unselected package libpackage-deprecationmanager-perl.
164s Preparing to unpack .../113-libpackage-deprecationmanager-perl_0.18-1_all.deb ...
164s Unpacking libpackage-deprecationmanager-perl (0.18-1) ...
164s Selecting previously unselected package libpackage-stash-xs-perl:amd64.
164s Preparing to unpack .../114-libpackage-stash-xs-perl_0.30-1build5_amd64.deb ...
164s Unpacking libpackage-stash-xs-perl:amd64 (0.30-1build5) ...
164s Selecting previously unselected package libmoose-perl:amd64.
164s Preparing to unpack .../115-libmoose-perl_2.2207-1build3_amd64.deb ...
164s Unpacking libmoose-perl:amd64 (2.2207-1build3) ...
164s Selecting previously unselected package ncbi-vdb-data.
164s Preparing to unpack .../116-ncbi-vdb-data_3.2.1+dfsg-2build1_all.deb ...
164s Unpacking ncbi-vdb-data (3.2.1+dfsg-2build1) ...
164s Selecting previously unselected package libncbi-vdb3:amd64.
164s Preparing to unpack .../117-libncbi-vdb3_3.2.1+dfsg-2build1_amd64.deb ...
164s Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2build1) ...
164s Selecting previously unselected package libpadwalker-perl.
164s Preparing to unpack .../118-libpadwalker-perl_2.5-1build7_amd64.deb ...
164s Unpacking libpadwalker-perl (2.5-1build7) ...
164s Selecting previously unselected package libthai-data.
164s Preparing to unpack .../119-libthai-data_0.1.30-1_all.deb ...
164s Unpacking libthai-data (0.1.30-1) ...
164s Selecting previously unselected package libthai0:amd64.
164s Preparing to unpack .../120-libthai0_0.1.30-1_amd64.deb ...
164s Unpacking libthai0:amd64 (0.1.30-1) ...
164s Selecting previously unselected package libpango-1.0-0:amd64.
164s Preparing to unpack .../121-libpango-1.0-0_1.57.0-1_amd64.deb ...
164s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ...
164s Selecting previously unselected package libpangoft2-1.0-0:amd64.
164s Preparing to unpack .../122-libpangoft2-1.0-0_1.57.0-1_amd64.deb ...
164s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ...
164s Selecting previously unselected package libpangocairo-1.0-0:amd64.
164s Preparing to unpack .../123-libpangocairo-1.0-0_1.57.0-1_amd64.deb ...
164s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ...
164s Selecting previously unselected package libpaper2:amd64.
164s Preparing to unpack .../124-libpaper2_2.2.5-0.3build1_amd64.deb ...
164s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ...
164s Selecting previously unselected package libpaper-utils.
164s Preparing to unpack .../125-libpaper-utils_2.2.5-0.3build1_amd64.deb ...
164s Unpacking libpaper-utils (2.2.5-0.3build1) ...
164s Selecting previously unselected package libpath-tiny-perl.
164s Preparing to unpack .../126-libpath-tiny-perl_0.148-1_all.deb ...
164s Unpacking libpath-tiny-perl (0.148-1) ...
164s Selecting previously unselected package libperlio-utf8-strict-perl.
164s Preparing to unpack .../127-libperlio-utf8-strict-perl_0.010-1build4_amd64.deb ...
164s Unpacking libperlio-utf8-strict-perl (0.010-1build4) ...
164s Selecting previously unselected package libsharpyuv0:amd64.
164s Preparing to unpack .../128-libsharpyuv0_1.5.0-0.1build1_amd64.deb ...
164s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ...
164s Selecting previously unselected package libsm6:amd64.
164s Preparing to unpack .../129-libsm6_2%3a1.2.6-1build1_amd64.deb ...
164s Unpacking libsm6:amd64 (2:1.2.6-1build1) ...
164s Selecting previously unselected package libtcl8.6:amd64.
164s Preparing to unpack .../130-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ...
164s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ...
164s Selecting previously unselected package libtest-file-perl.
164s Preparing to unpack .../131-libtest-file-perl_1.995-1_all.deb ...
164s Unpacking libtest-file-perl (1.995-1) ...
164s Selecting previously unselected package libtest-files-perl.
164s Preparing to unpack .../132-libtest-files-perl_0.26-1_all.deb ...
164s Unpacking libtest-files-perl (0.26-1) ...
164s Selecting previously unselected package libtest-output-perl.
164s Preparing to unpack .../133-libtest-output-perl_1.036-1_all.deb ...
164s Unpacking libtest-output-perl (1.036-1) ...
164s Selecting previously unselected package libtext-csv-perl.
164s Preparing to unpack .../134-libtext-csv-perl_2.06-1_all.deb ...
164s Unpacking libtext-csv-perl (2.06-1) ...
164s Selecting previously unselected package libjbig0:amd64.
164s Preparing to unpack .../135-libjbig0_2.1-6.1ubuntu3_amd64.deb ...
164s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ...
164s Selecting previously unselected package libwebp7:amd64.
164s Preparing to unpack .../136-libwebp7_1.5.0-0.1build1_amd64.deb ...
164s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ...
164s Selecting previously unselected package libtiff6:amd64.
164s Preparing to unpack .../137-libtiff6_4.7.0-3ubuntu3_amd64.deb ...
164s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ...
164s Selecting previously unselected package libtingea0:amd64.
164s Preparing to unpack .../138-libtingea0_21-361-2build2_amd64.deb ...
164s Unpacking libtingea0:amd64 (21-361-2build2) ...
164s Selecting previously unselected package libxft2:amd64.
164s Preparing to unpack .../139-libxft2_2.3.6-1build2_amd64.deb ...
164s Unpacking libxft2:amd64 (2.3.6-1build2) ...
164s Selecting previously unselected package libxss1:amd64.
164s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build4_amd64.deb ...
164s Unpacking libxss1:amd64 (1:1.2.3-1build4) ...
164s Selecting previously unselected package libtk8.6:amd64.
164s Preparing to unpack .../141-libtk8.6_8.6.17-1_amd64.deb ...
164s Unpacking libtk8.6:amd64 (8.6.17-1) ...
164s Selecting previously unselected package libxt6t64:amd64.
164s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.3_amd64.deb ...
164s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ...
164s Selecting previously unselected package mafft.
164s Preparing to unpack .../143-mafft_7.525-1_amd64.deb ...
164s Unpacking mafft (7.525-1) ...
164s Selecting previously unselected package ncbi-data.
164s Preparing to unpack .../144-ncbi-data_6.1.20170106+dfsg2-7_all.deb ...
164s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ...
164s Selecting previously unselected package ncbi-blast+.
164s Preparing to unpack .../145-ncbi-blast+_2.16.0+ds-7_amd64.deb ...
164s Unpacking ncbi-blast+ (2.16.0+ds-7) ...
164s Selecting previously unselected package prank.
164s Preparing to unpack .../146-prank_250331-1_amd64.deb ...
164s Unpacking prank (250331-1) ...
164s Selecting previously unselected package zip.
164s Preparing to unpack .../147-zip_3.0-15ubuntu3_amd64.deb ...
164s Unpacking zip (3.0-15ubuntu3) ...
164s Selecting previously unselected package unzip.
164s Preparing to unpack .../148-unzip_6.0-29ubuntu1_amd64.deb ...
164s Unpacking unzip (6.0-29ubuntu1) ...
164s Selecting previously unselected package xdg-utils.
164s Preparing to unpack .../149-xdg-utils_1.2.1-2ubuntu2_all.deb ...
164s Unpacking xdg-utils (1.2.1-2ubuntu2) ...
164s Selecting previously unselected package r-base-core.
164s Preparing to unpack .../150-r-base-core_4.5.2-1ubuntu2_amd64.deb ...
164s Unpacking r-base-core (4.5.2-1ubuntu2) ...
165s Selecting previously unselected package r-cran-cli.
165s Preparing to unpack .../151-r-cran-cli_3.6.4-1_amd64.deb ...
165s Unpacking r-cran-cli (3.6.4-1) ...
165s Selecting previously unselected package r-cran-farver.
165s Preparing to unpack .../152-r-cran-farver_2.1.2-1_amd64.deb ...
165s Unpacking r-cran-farver (2.1.2-1) ...
165s Selecting previously unselected package r-cran-glue.
165s Preparing to unpack .../153-r-cran-glue_1.8.0-1_amd64.deb ...
165s Unpacking r-cran-glue (1.8.0-1) ...
165s Selecting previously unselected package r-cran-rlang.
165s Preparing to unpack .../154-r-cran-rlang_1.1.5-3_amd64.deb ...
165s Unpacking r-cran-rlang (1.1.5-3) ...
165s Selecting previously unselected package r-cran-lifecycle.
165s Preparing to unpack .../155-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ...
165s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ...
165s Selecting previously unselected package r-cran-gtable.
165s Preparing to unpack .../156-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
165s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
165s Selecting previously unselected package r-cran-isoband.
165s Preparing to unpack .../157-r-cran-isoband_0.2.7-1_amd64.deb ...
165s Unpacking r-cran-isoband (0.2.7-1) ...
165s Selecting previously unselected package r-cran-s7.
165s Preparing to unpack .../158-r-cran-s7_0.2.0-1_amd64.deb ...
165s Unpacking r-cran-s7 (0.2.0-1) ...
165s Selecting previously unselected package r-cran-labeling.
165s Preparing to unpack .../159-r-cran-labeling_0.4.3-1_all.deb ...
165s Unpacking r-cran-labeling (0.4.3-1) ...
165s Selecting previously unselected package r-cran-r6.
165s Preparing to unpack .../160-r-cran-r6_2.6.1-1_all.deb ...
165s Unpacking r-cran-r6 (2.6.1-1) ...
165s Selecting previously unselected package r-cran-rcolorbrewer.
165s Preparing to unpack .../161-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ...
165s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ...
165s Selecting previously unselected package r-cran-viridislite.
165s Preparing to unpack .../162-r-cran-viridislite_0.4.3-1_all.deb ...
165s Unpacking r-cran-viridislite (0.4.3-1) ...
165s Selecting previously unselected package r-cran-scales.
165s Preparing to unpack .../163-r-cran-scales_1.4.0-1_all.deb ...
165s Unpacking r-cran-scales (1.4.0-1) ...
165s Selecting previously unselected package r-cran-vctrs.
165s Preparing to unpack .../164-r-cran-vctrs_0.6.5-1_amd64.deb ...
165s Unpacking r-cran-vctrs (0.6.5-1) ...
165s Selecting previously unselected package r-cran-withr.
165s Preparing to unpack .../165-r-cran-withr_3.0.2+dfsg-1_all.deb ...
165s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
165s Selecting previously unselected package r-cran-ggplot2.
165s Preparing to unpack .../166-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ...
165s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ...
165s Selecting previously unselected package fasttree.
165s Preparing to unpack .../167-fasttree_2.1.11-2build1_amd64.deb ...
165s Unpacking fasttree (2.1.11-2build1) ...
165s Selecting previously unselected package mcl.
165s Preparing to unpack .../168-mcl_1%3a22-282+ds-4build1_amd64.deb ...
165s Unpacking mcl (1:22-282+ds-4build1) ...
165s Selecting previously unselected package parallel.
165s Preparing to unpack .../169-parallel_20240222+ds-2build1_all.deb ...
165s Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel'
165s Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel'
165s Unpacking parallel (20240222+ds-2build1) ...
165s Selecting previously unselected package roary.
165s Preparing to unpack .../170-roary_3.13.0+dfsg-2build1_all.deb ...
165s Unpacking roary (3.13.0+dfsg-2build1) ...
165s Setting up libarray-utils-perl (0.5-3) ...
165s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
165s Setting up ncbi-data (6.1.20170106+dfsg2-7) ...
165s Setting up libpixman-1-0:amd64 (0.46.4-1) ...
165s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
165s Setting up libfile-slurper-perl (0.014-1) ...
165s Setting up libfile-which-perl (1.27-2) ...
165s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
165s Setting up libparse-yapp-perl (1.21-4) ...
165s Setting up libxrender1:amd64 (1:0.9.12-1) ...
165s Setting up libdynaloader-functions-perl (0.004-2) ...
165s Setting up libdatrie1:amd64 (0.2.14-1) ...
165s Setting up libtext-glob-perl (0.11-3) ...
165s Setting up libtest-deep-perl (1.205-1) ...
165s Setting up libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
165s Setting up mafft (7.525-1) ...
165s Setting up libclone-perl:amd64 (0.47-1) ...
165s Setting up libalgorithm-diff-perl (1.201-1) ...
165s Setting up libhtml-tagset-perl (3.24-1) ...
165s Setting up libtest-file-perl (1.995-1) ...
165s Setting up unzip (6.0-29ubuntu1) ...
165s Setting up libheap-perl (0.80-5) ...
165s Setting up liblwp-mediatypes-perl (6.04-2) ...
165s Setting up x11-common (1:7.7+24ubuntu1) ...
165s Setting up libtry-tiny-perl (0.32-1) ...
165s Setting up libdeflate0:amd64 (1.23-2build1) ...
165s Setting up perl-openssl-defaults:amd64 (7build4) ...
165s Setting up libpadwalker-perl (2.5-1build7) ...
165s Setting up libencode-locale-perl (1.05-3) ...
165s Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
165s Setting up libfindbin-libs-perl (4.0.4-1) ...
165s Setting up libgomp1:amd64 (16-20260208-1ubuntu1) ...
165s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ...
165s Setting up libsub-install-perl (0.929-1) ...
165s Setting up libnumber-compare-perl (0.03-3) ...
165s Setting up libio-string-perl (1.08-4) ...
165s Setting up zip (3.0-15ubuntu3) ...
165s Setting up libpackage-stash-xs-perl:amd64 (0.30-1build5) ...
165s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
165s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
165s Setting up libclass-data-inheritable-perl (0.10-1) ...
165s Setting up libalgorithm-c3-perl (0.11-2) ...
165s Setting up libset-object-perl (1.43-1) ...
165s Setting up liblog-log4perl-perl (1.57-1) ...
165s Setting up libtext-diff-perl (1.45-2) ...
165s Setting up libfile-find-rule-perl (0.35-1build1) ...
165s Setting up libperlio-utf8-strict-perl (0.010-1build4) ...
165s Setting up libxml-writer-perl (0.900-2) ...
165s Setting up libenv-path-perl (0.19-4) ...
165s Setting up fonts-dejavu-mono (2.37-8build1) ...
165s Setting up libio-html-perl (1.004-3) ...
165s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1build1) ...
165s Setting up libb-hooks-op-check-perl:amd64 (0.22-3build2) ...
165s Setting up libfile-grep-perl (0.02-3) ...
165s Setting up fonts-dejavu-core (2.37-8build1) ...
165s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
165s Setting up libparams-util-perl (1.102-3build1) ...
165s Setting up parallel (20240222+ds-2build1) ...
165s Setting up libspiffy-perl (0.46-1build1) ...
165s Setting up libgfortran5:amd64 (16-20260208-1ubuntu1) ...
165s Setting up libsub-exporter-progressive-perl (0.001013-3) ...
165s Setting up libwebp7:amd64 (1.5.0-0.1build1) ...
165s Setting up libcapture-tiny-perl (0.50-1) ...
165s Setting up libtimedate-perl (2.3300-2) ...
165s Setting up libdata-stag-perl (0.14-4) ...
165s Setting up libfile-chdir-perl (0.1011-1) ...
165s Setting up libpath-tiny-perl (0.148-1) ...
165s Setting up libtingea0:amd64 (21-361-2build2) ...
165s Setting up libsub-uplevel-perl (0.2800-3) ...
165s Setting up libharfbuzz0b:amd64 (12.3.2-1) ...
165s Setting up ncbi-vdb-data (3.2.1+dfsg-2build1) ...
165s Setting up libthai-data (0.1.30-1) ...
165s Setting up libdevel-globaldestruction-perl (0.14-4) ...
165s Setting up fasttree (2.1.11-2build1) ...
165s Setting up libdevel-stacktrace-perl (2.0500-1) ...
165s Setting up libclass-xsaccessor-perl (1.19-4build6) ...
165s Setting up libbio-perl-perl (1.7.8-3) ...
165s Setting up libxss1:amd64 (1:1.2.3-1build4) ...
165s Setting up libmbedcrypto16:amd64 (3.6.5-0.1ubuntu2) ...
165s Setting up libpaper2:amd64 (2.2.5-0.3build1) ...
166s Setting up xdg-utils (1.2.1-2ubuntu2) ...
166s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
166s Setting up bedtools (2.31.1+dfsg-3) ...
166s Setting up liburi-perl (5.34-2build1) ...
166s Setting up libtest-simple-perl (1.302219-1) ...
166s Setting up prank (250331-1) ...
166s Setting up libtext-csv-perl (2.06-1) ...
166s Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
166s Setting up cd-hit (4.8.1-4build1) ...
166s Setting up libjpeg8:amd64 (8c-2ubuntu12) ...
166s Setting up libice6:amd64 (2:1.1.1-1build1) ...
166s Setting up libhttp-date-perl (6.06-1) ...
166s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ...
166s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
166s Setting up libfile-listing-perl (6.16-1) ...
166s Setting up fontconfig-config (2.17.1-3ubuntu1) ...
166s Setting up libtest-warn-perl (0.37-2) ...
166s Setting up libtest-differences-perl (0.72-1) ...
166s Setting up libnet-http-perl (6.24-1build1) ...
166s Setting up libexception-class-perl (1.45-1) ...
166s Setting up libpaper-utils (2.2.5-0.3build1) ...
166s Setting up libio-all-perl (0.87-2) ...
166s Setting up libclass-c3-perl (0.35-2) ...
166s Setting up libgraph-perl (1:0.9735-1) ...
166s Setting up libdevel-callchecker-perl:amd64 (0.009-2) ...
166s Setting up libdata-compare-perl (1.29-1) ...
166s Setting up libthai0:amd64 (0.1.30-1) ...
166s Setting up libmbedx509-7:amd64 (3.6.5-0.1ubuntu2) ...
166s Setting up libtest-exception-perl (0.43-3) ...
166s Setting up mcl (1:22-282+ds-4build1) ...
166s Setting up libdata-optlist-perl (0.114-1) ...
166s Setting up libtest-output-perl (1.036-1) ...
166s Setting up libmbedtls21:amd64 (3.6.5-0.1ubuntu2) ...
166s Setting up libwww-robotrules-perl (6.02-1build1) ...
166s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ...
166s Setting up libhtml-parser-perl:amd64 (3.83-1build1) ...
166s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
166s Setting up libmro-compat-perl (0.15-2) ...
166s Setting up libsm6:amd64 (2:1.2.6-1build1) ...
166s Setting up libio-socket-ssl-perl (2.098-1) ...
166s Setting up libsub-exporter-perl (0.990-1) ...
166s Setting up libhttp-message-perl (7.01-1ubuntu1) ...
166s Setting up libeval-closure-perl (0.14-3) ...
166s Setting up libhttp-negotiate-perl (6.01-2) ...
166s Setting up fontconfig (2.17.1-3ubuntu1) ...
168s Regenerating fonts cache... done.
168s Setting up libxft2:amd64 (2.3.6-1build2) ...
168s Setting up libhttp-cookies-perl (6.11-1) ...
168s Setting up libtest-most-perl (0.38-1) ...
168s Setting up libhtml-tree-perl (5.07-3) ...
168s Setting up libtk8.6:amd64 (8.6.17-1) ...
168s Setting up libparams-classify-perl:amd64 (0.015-2build6) ...
168s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
168s Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2build1) ...
168s Setting up libcairo2:amd64 (1.18.4-3) ...
168s Setting up ncbi-blast+ (2.16.0+ds-7) ...
168s Setting up libmodule-runtime-perl (0.018-1) ...
168s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
168s Setting up libdist-checkconflicts-perl (0.11-2) ...
168s Setting up libconst-fast-perl (0.014-2) ...
168s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
168s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
168s Setting up bioperl (1.7.8-3) ...
168s Setting up libmodule-implementation-perl (0.09-2) ...
168s Setting up libpackage-stash-perl (0.40-1) ...
168s Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
168s Setting up libtest-files-perl (0.26-1) ...
168s Setting up libclass-load-perl (0.25-2) ...
168s Setting up r-base-core (4.5.2-1ubuntu2) ...
168s Creating config file /etc/R/Renviron with new version
168s Setting up r-cran-labeling (0.4.3-1) ...
168s Setting up r-cran-farver (2.1.2-1) ...
168s Setting up libpackage-deprecationmanager-perl (0.18-1) ...
168s Setting up r-cran-viridislite (0.4.3-1) ...
168s Setting up libdevel-overloadinfo-perl (0.008-1) ...
168s Setting up libclass-load-xs-perl (0.10-2build5) ...
168s Setting up r-cran-r6 (2.6.1-1) ...
168s Setting up r-cran-rlang (1.1.5-3) ...
168s Setting up r-cran-withr (3.0.2+dfsg-1) ...
168s Setting up libmoose-perl:amd64 (2.2207-1build3) ...
168s Setting up r-cran-glue (1.8.0-1) ...
168s Setting up r-cran-cli (3.6.4-1) ...
168s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
168s Setting up r-cran-s7 (0.2.0-1) ...
168s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
168s Setting up r-cran-isoband (0.2.7-1) ...
168s Setting up r-cran-scales (1.4.0-1) ...
168s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
168s Setting up r-cran-vctrs (0.6.5-1) ...
168s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
168s Setting up liblwp-protocol-https-perl (6.14-1) ...
168s Setting up libwww-perl (6.81-1build1) ...
168s Setting up libdigest-md5-file-perl (0.08-2) ...
168s Setting up libxml-parser-perl (2.47-1build4) ...
168s Setting up libgraph-readwrite-perl (2.10-1) ...
168s Setting up roary (3.13.0+dfsg-2build1) ...
168s Processing triggers for install-info (7.2-5) ...
168s Processing triggers for libc-bin (2.42-2ubuntu4) ...
168s Processing triggers for man-db (2.13.1-1build1) ...
170s autopkgtest [06:10:44]: test run-unit-test: [-----------------------
170s 
170s Please cite Roary if you use any of the results it produces:
170s     Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill,
170s 	"Roary: Rapid large-scale prokaryote pan genome analysis", Bioinformatics, 2015 Nov 15;31(22):3691-3693
170s     doi: http://doi.org/10.1093/bioinformatics/btv421
170s 	Pubmed: 26198102
170s 
172s autopkgtest [06:10:46]: test run-unit-test: -----------------------]
172s run-unit-test        PASS
172s autopkgtest [06:10:46]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
173s autopkgtest [06:10:47]: @@@@@@@@@@@@@@@@@@@@ summary
173s run-unit-test        PASS