0s autopkgtest [06:07:52]: starting date and time: 2026-02-10 06:07:52+0000
  0s autopkgtest [06:07:52]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [06:07:52]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.babjmkx0/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-other-rajewsky-dropbead --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-22.secgroup --name adt-resolute-amd64-r-other-rajewsky-dropbead-20260210-060752-juju-7f2275-prod-proposed-migration-environment-15-30602b58-96da-4d45-bc6c-d781768a4c6c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  4s Creating nova instance adt-resolute-amd64-r-other-rajewsky-dropbead-20260210-060752-juju-7f2275-prod-proposed-migration-environment-15-30602b58-96da-4d45-bc6c-d781768a4c6c from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 72s autopkgtest [06:09:04]: testbed dpkg architecture: amd64
 72s autopkgtest [06:09:04]: testbed apt version: 3.1.14
 72s autopkgtest [06:09:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 73s autopkgtest [06:09:05]: testbed release detected to be: None
 73s autopkgtest [06:09:05]: updating testbed package index (apt update)
 73s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 73s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1727 kB]
 74s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 74s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [178 kB]
 74s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [219 kB]
 74s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB]
 74s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6184 B]
 74s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 74s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1787 kB]
 74s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [792 kB]
 74s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.5 kB]
 74s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 74s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 74s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 75s Fetched 5197 kB in 1s (7107 kB/s)
 75s Reading package lists...
 76s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 77s Reading package lists...
 77s Reading package lists...
 77s Building dependency tree...
 77s Reading state information...
 77s Calculating upgrade...
 77s The following package was automatically installed and is no longer required:
 77s   libpython3.13
 77s Use 'sudo apt autoremove' to remove it.
 77s The following NEW packages will be installed:
 77s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 77s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 77s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 77s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 77s The following packages will be upgraded:
 77s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 77s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 77s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 77s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 77s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbrotli1 libbsd0
 77s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 77s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 77s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 77s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 77s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 77s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 77s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 77s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 77s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 77s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 77s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 77s 91 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 77s Need to get 237 MB of archives.
 77s After this operation, 339 MB of additional disk space will be used.
 77s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 77s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 77s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 77s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 77s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 77s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 77s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 77s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 77s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 77s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 77s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 78s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 78s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 78s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 78s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 78s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 78s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 78s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 78s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 78s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 78s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 78s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 78s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 78s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 78s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 78s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 78s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 78s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 78s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 78s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 78s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 78s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 78s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 78s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 78s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 78s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 78s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 78s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 78s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 78s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 78s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 78s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 78s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 78s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 78s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 78s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 78s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 78s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 78s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 78s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 78s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 78s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 78s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 78s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 78s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 78s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 78s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 78s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 78s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 78s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 78s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 78s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 78s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 78s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 78s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 78s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 78s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 78s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 78s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 78s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 78s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.2.0-3 [343 kB]
 78s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 78s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 78s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 78s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 78s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 78s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 78s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 78s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 78s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 79s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 79s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 82s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 82s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 82s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 82s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 82s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 82s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 82s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 82s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 82s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 82s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 82s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 82s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 82s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 82s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 82s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 82s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 82s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 82s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 83s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 83s Fetched 237 MB in 5s (47.6 MB/s)
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 83s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 83s Setting up debianutils (5.23.2build1) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 83s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 83s Setting up dash (0.5.12-12ubuntu3) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 83s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 83s Setting up findutils (4.10.0-3build2) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 83s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 83s Setting up sed (4.9-2build3) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 83s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 83s Setting up tar (1.35+dfsg-3.1build2) ...
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 92s Setting up libsensors-config (1:3.6.2-2build1) ...
 92s Setting up less (668-1build1) ...
 92s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
 92s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
 92s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 92s amd64-microcode: microcode will be updated at next boot
 92s Setting up man-db (2.13.1-1build1) ...
 92s Updating database of manual pages ...
 93s man-db.service is a disabled or a static unit not running, not starting it.
 93s Setting up libjansson4:amd64 (2.14-2build4) ...
 93s Setting up libglib2.0-data (2.87.2-2) ...
 93s Setting up pollinate (4.33-4ubuntu5) ...
104s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
104s Setting up libwrap0:amd64 (7.6.q-36build2) ...
104s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
105s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
105s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
105s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
105s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
105s Setting up patch (2.8-2build1) ...
105s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
105s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
105s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
105s Setting up lsof (4.99.4+dfsg-2build2) ...
105s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
105s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
105s Setting up dracut-install (109-11ubuntu1) ...
105s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
105s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
105s Setting up pnp.ids (0.394-1build1) ...
105s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
105s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
105s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
105s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
105s Setting up mawk (1.3.4.20260129-1) ...
105s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
105s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
105s Setting up linux-image-virtual (6.19.0-3.3) ...
105s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
105s Setting up libbsd0:amd64 (0.12.2-2build2) ...
105s Setting up libdrm-common (2.4.131-1) ...
105s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
105s Setting up dbus-bin (1.16.2-2ubuntu3) ...
105s Setting up libonig5:amd64 (6.9.10-1build1) ...
105s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
105s Setting up ethtool (1:6.15-3build1) ...
105s Setting up python3-referencing (0.36.2-1ubuntu2) ...
106s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
106s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
106s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
106s Setting up tcpdump (4.99.5-2ubuntu3) ...
106s Setting up linux-image-generic (6.19.0-3.3) ...
106s Setting up wget (1.25.0-2ubuntu4) ...
106s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
106s Setting up iptables (1.8.11-2ubuntu3) ...
106s Setting up iproute2 (6.18.0-1ubuntu1) ...
106s Setting up linux-headers-generic (6.19.0-3.3) ...
106s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
106s Setting up hwdata (0.394-1build1) ...
106s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
106s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
106s No schema files found: doing nothing.
106s Setting up dbus (1.16.2-2ubuntu3) ...
106s A reboot is required to replace the running dbus-daemon.
106s Please reboot the system when convenient.
106s Setting up shared-mime-info (2.4-5build3) ...
107s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
107s Setting up pciutils (1:3.14.0-1build2) ...
107s Setting up python3-markdown-it (3.0.0-3build1) ...
107s Setting up libdrm2:amd64 (2.4.131-1) ...
107s Setting up libpython3.14:amd64 (3.14.2-1) ...
107s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
107s Setting up linux-tools-common (6.19.0-3.3) ...
107s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
107s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
107s Setting up apt (3.1.15) ...
108s Setting up linux-headers-virtual (6.19.0-3.3) ...
108s Setting up linux-generic (6.19.0-3.3) ...
108s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
108s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
108s Setting up ubuntu-standard (1.564) ...
108s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
108s Setting up linux-virtual (6.19.0-3.3) ...
108s Setting up linux-perf (6.19.0-3.3) ...
108s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
108s Processing triggers for debianutils (5.23.2build1) ...
108s Processing triggers for install-info (7.2-5) ...
108s Processing triggers for initramfs-tools (0.150ubuntu7) ...
108s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
113s Processing triggers for libc-bin (2.42-2ubuntu4) ...
113s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
113s /etc/kernel/postinst.d/initramfs-tools:
113s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
117s /etc/kernel/postinst.d/zz-update-grub:
117s Sourcing file `/etc/default/grub'
117s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
117s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
117s Generating grub configuration file ...
117s Found linux image: /boot/vmlinuz-6.19.0-3-generic
117s Found initrd image: /boot/initrd.img-6.19.0-3-generic
117s Found linux image: /boot/vmlinuz-6.18.0-9-generic
117s Found initrd image: /boot/initrd.img-6.18.0-9-generic
118s Warning: os-prober will not be executed to detect other bootable partitions.
118s Systems on them will not be added to the GRUB boot configuration.
118s Check GRUB_DISABLE_OS_PROBER documentation entry.
118s Adding boot menu entry for UEFI Firmware Settings ...
118s done
118s autopkgtest [06:09:50]: upgrading testbed (apt dist-upgrade and autopurge)
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Calculating upgrade...
119s The following package was automatically installed and is no longer required:
119s   libpython3.13
119s Use 'sudo apt autoremove' to remove it.
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Solving dependencies...
119s The following packages will be REMOVED:
119s   libpython3.13*
120s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
120s After this operation, 7599 kB disk space will be freed.
120s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
120s Removing libpython3.13:amd64 (3.13.11-1) ...
120s Processing triggers for libc-bin (2.42-2ubuntu4) ...
120s autopkgtest [06:09:52]: rebooting testbed after setup commands that affected boot
149s autopkgtest [06:10:21]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
151s autopkgtest [06:10:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-other-rajewsky-dropbead
152s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-other-rajewsky-dropbead 0.3.1+git20180221.d746c6f+ds-3build1 (dsc) [2419 B]
152s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-other-rajewsky-dropbead 0.3.1+git20180221.d746c6f+ds-3build1 (tar) [956 kB]
152s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-other-rajewsky-dropbead 0.3.1+git20180221.d746c6f+ds-3build1 (diff) [2992 B]
152s gpgv: Signature made Fri Nov 28 22:14:10 2025 UTC
152s gpgv:                using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809
152s gpgv: Can't check signature: No public key
152s dpkg-source: warning: cannot verify inline signature for ./r-other-rajewsky-dropbead_0.3.1+git20180221.d746c6f+ds-3build1.dsc: no acceptable signature found
152s autopkgtest [06:10:24]: testing package r-other-rajewsky-dropbead version 0.3.1+git20180221.d746c6f+ds-3build1
153s autopkgtest [06:10:25]: build not needed
154s autopkgtest [06:10:26]: test pkg-r-autopkgtest: preparing testbed
154s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s Solving dependencies...
155s The following NEW packages will be installed:
155s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
155s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
155s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
155s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
155s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
155s   libblas-dev libblas3 libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin
155s   libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev
155s   libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5
155s   libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23
155s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
155s   libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
155s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
155s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
155s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
155s   libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libtcl8.6 libthai-data
155s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7
155s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev
155s   linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
155s   r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
155s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
155s   r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
155s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh
155s   r-cran-bitops r-cran-catools r-cran-cli r-cran-codetools r-cran-cpp11
155s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-farver r-cran-formatr
155s   r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-ggplot2
155s   r-cran-glue r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools
155s   r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-kernsmooth r-cran-labeling
155s   r-cran-lambda.r r-cran-lifecycle r-cran-littler r-cran-mass r-cran-mime
155s   r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
155s   r-cran-rcpp r-cran-rlang r-cran-s7 r-cran-scales r-cran-snow r-cran-sys
155s   r-cran-vctrs r-cran-viridislite r-cran-withr r-other-rajewsky-dropbead
155s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
155s 0 upgraded, 166 newly installed, 0 to remove and 0 not upgraded.
155s Need to get 238 MB of archives.
155s After this operation, 767 MB of additional disk space will be used.
155s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
155s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
155s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
155s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
155s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
155s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
155s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
155s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
155s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
155s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
155s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
155s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
155s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
155s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
155s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
156s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
156s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
156s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
156s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
156s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
156s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
156s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
157s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
157s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
157s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
157s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
158s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
158s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
158s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
158s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
158s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
158s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
158s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
158s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
158s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
158s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
158s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
158s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
159s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
159s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
159s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
159s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
159s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
159s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
159s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
159s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
159s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
160s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
160s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
160s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
160s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
160s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
160s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
160s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
160s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
160s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
160s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
160s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
160s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
160s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
160s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
160s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
161s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
161s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
161s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
161s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
161s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
161s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
161s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
161s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
161s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
161s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
161s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
161s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
161s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
161s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
161s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
161s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
161s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
161s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
161s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
161s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
161s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
161s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
161s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
161s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
161s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
161s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
161s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
161s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
161s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
161s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
161s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
161s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
161s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
161s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
161s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
161s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
161s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
161s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
161s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
163s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
163s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
163s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
163s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
163s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
163s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
163s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
163s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
163s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
163s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
163s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
163s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
163s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
163s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
163s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
163s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
164s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
164s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
164s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
164s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
164s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
164s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
164s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
164s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
164s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
164s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
164s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
164s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
164s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
164s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
165s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
165s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
165s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
166s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
166s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB]
166s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
166s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB]
166s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB]
166s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
166s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB]
167s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
167s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtools amd64 3.9.5-1build1 [345 kB]
167s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gdata all 3.0.1-1build1 [491 kB]
167s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
167s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
167s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
167s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
167s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
167s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
167s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
167s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
167s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
167s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
167s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
167s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
167s Get:157 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
168s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
168s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
168s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gplots all 3.3.0-1 [3825 kB]
168s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB]
168s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
168s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
168s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
168s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
168s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-other-rajewsky-dropbead all 0.3.1+git20180221.d746c6f+ds-3build1 [257 kB]
169s Preconfiguring packages ...
169s Fetched 238 MB in 14s (17.5 MB/s)
169s Selecting previously unselected package libc-dev-bin.
169s (Reading database ... 
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(Reading database ... 90%
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(Reading database ... 125269 files and directories currently installed.)
169s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
169s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
169s Selecting previously unselected package linux-libc-dev:amd64.
169s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
169s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
169s Selecting previously unselected package libcrypt-dev:amd64.
169s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
169s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
169s Selecting previously unselected package rpcsvc-proto.
169s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
169s Unpacking rpcsvc-proto (1.4.3-1build1) ...
169s Selecting previously unselected package libc6-dev:amd64.
169s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
169s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
169s Selecting previously unselected package libisl23:amd64.
169s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
169s Unpacking libisl23:amd64 (0.27-1build1) ...
169s Selecting previously unselected package libmpc3:amd64.
169s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
169s Unpacking libmpc3:amd64 (1.3.1-2) ...
169s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
169s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
169s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
169s Selecting previously unselected package cpp-15.
169s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
169s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
169s Selecting previously unselected package cpp-x86-64-linux-gnu.
169s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
169s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
169s Selecting previously unselected package cpp.
169s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
169s Unpacking cpp (4:15.2.0-4ubuntu1) ...
169s Selecting previously unselected package libcc1-0:amd64.
169s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libgomp1:amd64.
169s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libitm1:amd64.
169s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libasan8:amd64.
169s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package liblsan0:amd64.
169s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libtsan2:amd64.
169s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libubsan1:amd64.
169s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libhwasan0:amd64.
169s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libquadmath0:amd64.
169s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
169s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
169s Selecting previously unselected package libgcc-15-dev:amd64.
169s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
169s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
170s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package gcc-15.
170s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package gcc-x86-64-linux-gnu.
170s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
170s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Selecting previously unselected package gcc.
170s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
170s Unpacking gcc (4:15.2.0-4ubuntu1) ...
170s Selecting previously unselected package libstdc++-15-dev:amd64.
170s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package g++-15-x86-64-linux-gnu.
170s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package g++-15.
170s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking g++-15 (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package g++-x86-64-linux-gnu.
170s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
170s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Selecting previously unselected package g++.
170s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
170s Unpacking g++ (4:15.2.0-4ubuntu1) ...
170s Selecting previously unselected package build-essential.
170s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
170s Unpacking build-essential (12.12ubuntu2) ...
170s Selecting previously unselected package dctrl-tools.
170s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
170s Unpacking dctrl-tools (2.24-3build4) ...
170s Selecting previously unselected package fonts-dejavu-mono.
170s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
170s Unpacking fonts-dejavu-mono (2.37-8build1) ...
170s Selecting previously unselected package fonts-dejavu-core.
170s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
170s Unpacking fonts-dejavu-core (2.37-8build1) ...
170s Selecting previously unselected package fontconfig-config.
170s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
170s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
170s Selecting previously unselected package libfontconfig1:amd64.
170s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
170s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
170s Selecting previously unselected package fontconfig.
170s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
170s Unpacking fontconfig (2.17.1-3ubuntu1) ...
170s Selecting previously unselected package libgfortran5:amd64.
170s Preparing to unpack .../037-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
170s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
170s Selecting previously unselected package libgfortran-15-dev:amd64.
170s Preparing to unpack .../038-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
170s Preparing to unpack .../039-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package gfortran-15.
170s Preparing to unpack .../040-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
170s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
170s Selecting previously unselected package gfortran-x86-64-linux-gnu.
171s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
171s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
171s Selecting previously unselected package gfortran.
171s Preparing to unpack .../042-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
171s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
171s Selecting previously unselected package icu-devtools.
171s Preparing to unpack .../043-icu-devtools_78.2-1ubuntu1_amd64.deb ...
171s Unpacking icu-devtools (78.2-1ubuntu1) ...
171s Selecting previously unselected package libblas3:amd64.
171s Preparing to unpack .../044-libblas3_3.12.1-7ubuntu1_amd64.deb ...
171s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
171s Selecting previously unselected package libblas-dev:amd64.
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175s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
175s Setting up libpixman-1-0:amd64 (0.46.4-1) ...
175s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
175s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
175s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ...
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175s Setting up libdatrie1:amd64 (0.2.14-1) ...
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175s Setting up libdeflate0:amd64 (1.23-2build1) ...
175s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ...
175s Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up libgomp1:amd64 (16-20260208-1ubuntu1) ...
175s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ...
175s Setting up libpcre2-16-0:amd64 (10.46-1) ...
175s Setting up zip (3.0-15ubuntu3) ...
175s Setting up libpcre2-32-0:amd64 (10.46-1) ...
175s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
175s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
175s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ...
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175s Setting up libgfortran5:amd64 (16-20260208-1ubuntu1) ...
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175s Setting up liblzma-dev:amd64 (5.8.2-2) ...
175s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ...
175s Setting up libpcre2-posix3:amd64 (10.46-1) ...
175s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ...
175s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ...
175s Setting up libasan8:amd64 (16-20260208-1ubuntu1) ...
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175s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ...
175s Setting up libisl23:amd64 (0.27-1build1) ...
175s Setting up libc-dev-bin (2.42-2ubuntu4) ...
175s Setting up libdeflate-dev:amd64 (1.23-2build1) ...
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175s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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175s Setting up dctrl-tools (2.24-3build4) ...
175s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ...
175s Setting up libjpeg8:amd64 (8c-2ubuntu12) ...
175s Setting up libice6:amd64 (2:1.1.1-1build1) ...
175s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ...
175s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
175s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
175s Setting up fontconfig-config (2.17.1-3ubuntu1) ...
176s Setting up libpaper-utils (2.2.5-0.3build1) ...
176s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
176s Setting up pkgconf:amd64 (1.8.1-4build1) ...
176s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Setting up libthai0:amd64 (0.1.30-1) ...
176s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
176s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
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176s Setting up libbz2-dev:amd64 (1.0.8-6build2) ...
176s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Setting up fontconfig (2.17.1-3ubuntu1) ...
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178s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
178s Setting up libxft2:amd64 (2.3.6-1build2) ...
178s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
178s Setting up libpcre2-dev:amd64 (10.46-1) ...
178s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
178s Setting up libtk8.6:amd64 (8.6.17-1) ...
178s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
178s Setting up libreadline-dev:amd64 (8.3-3) ...
178s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
178s Setting up libcairo2:amd64 (1.18.4-3) ...
178s Setting up gcc-15 (15.2.0-12ubuntu1) ...
178s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
178s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
178s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
178s Setting up cpp (4:15.2.0-4ubuntu1) ...
178s Setting up libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ...
178s Setting up libboost-dev:amd64 (1.90.0.0ubuntu3) ...
178s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
178s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ...
178s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
178s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
178s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
178s Setting up libpng-dev:amd64 (1.6.54-1) ...
178s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ...
178s Setting up gcc (4:15.2.0-4ubuntu1) ...
178s Setting up r-base-core (4.5.2-1ubuntu2) ...
178s Creating config file /etc/R/Renviron with new version
178s Setting up r-cran-crayon (1.5.3-1) ...
178s Setting up r-cran-labeling (0.4.3-1) ...
178s Setting up r-cran-futile.options (1.0.1-3build2) ...
178s Setting up r-cran-farver (2.1.2-1) ...
178s Setting up r-cran-formatr (1.14-2) ...
178s Setting up r-cran-viridislite (0.4.3-1) ...
178s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
178s Setting up r-cran-r6 (2.6.1-1) ...
178s Setting up r-cran-pkgkitten (0.2.4-1) ...
178s Setting up g++-15 (15.2.0-12ubuntu1) ...
178s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
178s Setting up r-cran-littler (0.3.22-1) ...
178s Setting up r-cran-bh (1.84.0-1) ...
178s Setting up r-cran-rcpp (1.1.0-1) ...
178s Setting up r-cran-curl (7.0.0+dfsg-1) ...
178s Setting up r-cran-codetools (0.2-20-1build1) ...
178s Setting up r-bioc-biocgenerics (0.52.0-2) ...
178s Setting up r-cran-rlang (1.1.5-3) ...
178s Setting up r-cran-sys (3.4.3-1) ...
178s Setting up r-cran-withr (3.0.2+dfsg-1) ...
178s Setting up r-cran-mime (0.12-2) ...
178s Setting up r-cran-lambda.r (1.2.4-2build2) ...
178s Setting up r-cran-mass (7.3-65-1) ...
178s Setting up r-cran-snow (1:0.4.4-2build1) ...
178s Setting up r-cran-gtools (3.9.5-1build1) ...
178s Setting up r-cran-data.table (1.17.0+dfsg-1) ...
178s Setting up r-cran-glue (1.8.0-1) ...
178s Setting up r-cran-cli (3.6.4-1) ...
178s Setting up gfortran (4:15.2.0-4ubuntu1) ...
178s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
178s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
178s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
178s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
178s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
178s Setting up r-cran-bitops (1.0-9-1) ...
178s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
178s Setting up r-cran-askpass (1.2.1-1) ...
178s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
178s Setting up r-cran-s7 (0.2.0-1) ...
178s Setting up r-cran-cpp11 (0.5.3-1) ...
178s Setting up r-cran-plyr (1.8.9-1) ...
178s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
178s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
178s Setting up r-cran-isoband (0.2.7-1) ...
178s Setting up r-cran-futile.logger (1.4.3-4build2) ...
178s Setting up r-cran-scales (1.4.0-1) ...
178s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
178s Setting up r-cran-kernsmooth (2.23-26-1build1) ...
178s Setting up g++ (4:15.2.0-4ubuntu1) ...
178s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
178s Setting up build-essential (12.12ubuntu2) ...
178s Setting up r-cran-catools (1.18.3-1) ...
178s Setting up r-bioc-iranges (2.40.1-3) ...
178s Setting up r-cran-gdata (3.0.1-1build1) ...
178s Setting up r-cran-vctrs (0.6.5-1) ...
178s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
178s Setting up r-base-dev (4.5.2-1ubuntu2) ...
178s Setting up r-bioc-biocparallel (1.40.0-2) ...
178s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
178s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
178s Setting up r-cran-httr (1.4.7+dfsg-1) ...
178s Setting up r-cran-gridextra (2.3-3build2) ...
178s Setting up pkg-r-autopkgtest (20250812) ...
178s Setting up r-bioc-xvector (0.46.0-2) ...
178s Setting up r-cran-gplots (3.3.0-1) ...
178s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
178s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
178s Setting up r-other-rajewsky-dropbead (0.3.1+git20180221.d746c6f+ds-3build1) ...
178s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
178s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
178s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
178s Processing triggers for libc-bin (2.42-2ubuntu4) ...
178s Processing triggers for man-db (2.13.1-1build1) ...
179s Processing triggers for install-info (7.2-5) ...
180s autopkgtest [06:10:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
180s autopkgtest [06:10:52]: test pkg-r-autopkgtest: [-----------------------
180s Test: Try to load the R library dropbead
180s 
180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
180s Copyright (C) 2025 The R Foundation for Statistical Computing
180s Platform: x86_64-pc-linux-gnu
180s 
180s R is free software and comes with ABSOLUTELY NO WARRANTY.
180s You are welcome to redistribute it under certain conditions.
180s Type 'license()' or 'licence()' for distribution details.
180s 
180s R is a collaborative project with many contributors.
180s Type 'contributors()' for more information and
180s 'citation()' on how to cite R or R packages in publications.
180s 
180s Type 'demo()' for some demos, 'help()' for on-line help, or
180s 'help.start()' for an HTML browser interface to help.
180s Type 'q()' to quit R.
180s 
180s > library('dropbead')
180s Loading required package: ggplot2
181s Loading required package: grid
181s Loading required package: RColorBrewer
181s Loading required package: gridExtra
181s Loading required package: gplots
181s 
181s ---------------------
181s gplots 3.3.0 loaded:
181s   * Use citation('gplots') for citation info.
181s   * Homepage: https://talgalili.github.io/gplots/
181s   * Report issues: https://github.com/talgalili/gplots/issues
181s   * Ask questions: https://stackoverflow.com/questions/tagged/gplots
181s   * Suppress this message with: suppressPackageStartupMessages(library(gplots))
181s ---------------------
181s 
181s 
181s Attaching package: ‘gplots’
181s 
181s The following object is masked from ‘package:stats’:
181s 
181s     lowess
181s 
181s Loading required package: plyr
181s > 
181s autopkgtest [06:10:53]: test pkg-r-autopkgtest: -----------------------]
182s pkg-r-autopkgtest    PASS
182s autopkgtest [06:10:54]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
182s autopkgtest [06:10:54]: @@@@@@@@@@@@@@@@@@@@ summary
182s pkg-r-autopkgtest    PASS