0s autopkgtest [07:53:08]: starting date and time: 2026-01-31 07:53:08+0000 0s autopkgtest [07:53:08]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [07:53:08]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.oqjxe2w2/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rnetcdf --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rnetcdf/2.11-1-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-13.secgroup --name adt-resolute-amd64-r-cran-stars-20260131-075308-juju-7f2275-prod-proposed-migration-environment-15-f3060256-5046-4b18-b001-66429f3dc119 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-r-cran-stars-20260131-075308-juju-7f2275-prod-proposed-migration-environment-15-f3060256-5046-4b18-b001-66429f3dc119 from image adt/ubuntu-resolute-amd64-server-20260130.img (UUID afba56f8-6ab4-44eb-9e07-036bcbd7054f)... 74s autopkgtest [07:54:22]: testbed dpkg architecture: amd64 75s autopkgtest [07:54:23]: testbed apt version: 3.1.14 75s autopkgtest [07:54:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s autopkgtest [07:54:23]: testbed release detected to be: None 76s autopkgtest [07:54:24]: updating testbed package index (apt update) 76s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 76s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1183 kB] 78s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [4676 B] 78s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [106 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [26.6 kB] 78s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [118 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [102 kB] 78s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4168 B] 78s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [6164 B] 78s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [20.9 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [388 B] 78s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [957 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [385 kB] 79s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [25.0 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [23.7 kB] 80s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3336 B] 80s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1036 B] 80s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 c-n-f Metadata [309 kB] 80s Fetched 3525 kB in 4s (853 kB/s) 81s Reading package lists... 81s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 82s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 82s Fetched 248 kB in 0s (736 kB/s) 82s Reading package lists... 82s Reading package lists... 84s Building dependency tree... 84s Reading state information...dpkg-preconfigure: unable to re-open stdin: No such file or directory 84s 84s Calculating upgrade... 84s The following packages will be upgraded: 84s 3cpio bzip2 inetutils-telnet libbz2-1.0 libsqlite3-0 rng-tools-debian telnet 84s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 1234 kB of archives. 84s After this operation, 18.4 kB disk space will be freed. 84s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 rng-tools-debian amd64 2.6build1 [46.1 kB] 84s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 bzip2 amd64 1.0.8-6build2 [34.3 kB] 84s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-1.0 amd64 1.0.8-6build2 [37.0 kB] 84s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libsqlite3-0 amd64 3.46.1-9 [722 kB] 84s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 inetutils-telnet amd64 2:2.7-2ubuntu1 [107 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 telnet all 0.17+2.7-2ubuntu1 [3636 B] 84s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.13.1-1ubuntu1 [284 kB] 84s Fetched 1234 kB in 1s (2085 kB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 84s Preparing to unpack .../rng-tools-debian_2.6build1_amd64.deb ... 84s Unpacking rng-tools-debian (2.6build1) over (2.6) ... 84s Preparing to unpack .../bzip2_1.0.8-6build2_amd64.deb ... 84s Unpacking bzip2 (1.0.8-6build2) over (1.0.8-6build1) ... 84s Preparing to unpack .../libbz2-1.0_1.0.8-6build2_amd64.deb ... 84s Unpacking libbz2-1.0:amd64 (1.0.8-6build2) over (1.0.8-6build1) ... 84s Setting up libbz2-1.0:amd64 (1.0.8-6build2) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 84s Preparing to unpack .../libsqlite3-0_3.46.1-9_amd64.deb ... 84s Unpacking libsqlite3-0:amd64 (3.46.1-9) over (3.46.1-8) ... 84s Preparing to unpack .../inetutils-telnet_2%3a2.7-2ubuntu1_amd64.deb ... 84s Unpacking inetutils-telnet (2:2.7-2ubuntu1) over (2:2.6-4ubuntu1) ... 84s Preparing to unpack .../telnet_0.17+2.7-2ubuntu1_all.deb ... 84s Unpacking telnet (0.17+2.7-2ubuntu1) over (0.17+2.6-4ubuntu1) ... 84s Preparing to unpack .../3cpio_0.13.1-1ubuntu1_amd64.deb ... 84s Unpacking 3cpio (0.13.1-1ubuntu1) over (0.12.0-1ubuntu1) ... 84s Setting up 3cpio (0.13.1-1ubuntu1) ... 84s Setting up libsqlite3-0:amd64 (3.46.1-9) ... 84s Setting up inetutils-telnet (2:2.7-2ubuntu1) ... 84s Setting up bzip2 (1.0.8-6build2) ... 84s Setting up rng-tools-debian (2.6build1) ... 84s Setting up telnet (0.17+2.7-2ubuntu1) ... 84s Processing triggers for man-db (2.13.1-1) ... 85s Processing triggers for libc-bin (2.42-2ubuntu4) ... 85s autopkgtest [07:54:33]: upgrading testbed (apt dist-upgrade and autopurge) 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Calculating upgrade... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Solving dependencies... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s autopkgtest [07:54:34]: rebooting testbed after setup commands that affected boot 114s autopkgtest [07:55:02]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 116s autopkgtest [07:55:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 120s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (dsc) [2749 B] 120s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (tar) [4038 kB] 120s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (diff) [4400 B] 120s gpgv: Signature made Wed Feb 19 23:48:57 2025 UTC 120s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 120s gpgv: issuer "plessy@debian.org" 120s gpgv: Can't check signature: No public key 120s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-8-1.dsc: no acceptable signature found 120s autopkgtest [07:55:08]: testing package r-cran-stars version 0.6-8-1 121s autopkgtest [07:55:09]: build not needed 122s autopkgtest [07:55:10]: test run-unit-test: preparing testbed 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Solving dependencies... 122s The following NEW packages will be installed: 122s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 122s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 122s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 122s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 122s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 122s libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 122s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 122s libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 122s libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8 122s libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 122s libjs-highlight.js libjs-jquery libjs-jquery-datatables 122s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 122s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 122s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 122s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 122s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 122s libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 122s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 122s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 122s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 122s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 122s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 122s libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 122s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 122s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 122s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cftime 122s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 122s r-cran-codetools r-cran-collapse r-cran-commonmark r-cran-covr r-cran-cpp11 122s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 122s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 122s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 122s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 122s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 122s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 122s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 122s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 122s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 122s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 122s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 122s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 122s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta 122s r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict 122s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 122s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 122s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 122s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 122s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 122s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 122s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 122s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 122s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 122s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 122s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 122s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 122s r-cran-systemfonts r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble 122s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tweenr r-cran-units 122s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 122s r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml 122s r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 123s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 123s Need to get 297 MB of archives. 123s After this operation, 779 MB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 123s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 123s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 123s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 123s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 123s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 124s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 124s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 126s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 126s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 126s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 126s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 126s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 126s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 127s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 127s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 128s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 128s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 128s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 128s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 128s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 128s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 128s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 128s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 128s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 128s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 128s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 128s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 128s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 128s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 128s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 128s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 128s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 128s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 129s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 129s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 129s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 129s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 129s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 129s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 129s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 129s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 129s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 130s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 130s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 130s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 130s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 130s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 130s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 130s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 130s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 130s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 130s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 130s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 130s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 130s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 130s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 130s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 131s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 131s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 131s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 131s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 131s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 131s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 131s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 131s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 131s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 131s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 131s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 131s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 131s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 131s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 131s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 131s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 131s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 131s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 131s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 131s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 131s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 131s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 131s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 132s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 132s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 133s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 133s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 133s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 133s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 133s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 133s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 133s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 133s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 133s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 133s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 133s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 133s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 133s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 133s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 133s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 133s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 133s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 133s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 133s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 133s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 133s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 133s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 133s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 133s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 133s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 133s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 133s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 133s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 134s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 134s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 134s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 134s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 134s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 134s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 134s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 134s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 134s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 134s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 134s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 137s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 137s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 137s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 137s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 138s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 138s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 138s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 138s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 138s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 138s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 138s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 138s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 138s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 138s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 138s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 138s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 138s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 138s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 138s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 138s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 138s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 138s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 139s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 139s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 139s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 139s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 139s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 139s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 139s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 139s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 139s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 139s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 139s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 139s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 139s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 139s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 139s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 139s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 139s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 139s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 139s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 139s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 139s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 139s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 139s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 139s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 139s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 139s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 139s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 139s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 139s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 139s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 139s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 139s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 140s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 140s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 140s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 140s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 140s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 140s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 140s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 140s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 140s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 140s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 140s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 140s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 140s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 140s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 140s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 140s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 140s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 140s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 140s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 140s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 140s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 140s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 140s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 140s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 140s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 140s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 140s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 140s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB] 141s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-exactextractr amd64 0.10.0-1build2 [578 kB] 141s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 141s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 141s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 141s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 141s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 141s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 141s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 141s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 141s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 141s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 141s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 141s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 141s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 141s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 141s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 141s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 141s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 141s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 141s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 142s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 142s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 142s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 142s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 142s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 142s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 142s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 142s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 142s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 142s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 142s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 143s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 143s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 143s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 143s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 143s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 143s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 144s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 144s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 144s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 144s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 144s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 144s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 144s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 145s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 145s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 145s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 145s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 146s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 147s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 147s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 147s Get:256 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rnetcdf amd64 2.11-1-1 [242 kB] 147s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 147s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 147s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 147s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 147s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 147s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 147s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 147s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 147s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 147s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 148s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 148s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 148s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 148s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 148s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 148s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 148s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 148s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 148s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 148s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 148s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 149s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 149s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 150s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 150s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 150s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 150s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 150s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 150s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 150s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 151s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 151s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 151s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 151s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 151s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 151s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 152s Preconfiguring packages ... 152s Fetched 297 MB in 29s (10.2 MB/s) 152s Selecting previously unselected package fonts-dejavu-mono. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 152s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 152s Unpacking fonts-dejavu-mono (2.37-8build1) ... 152s Selecting previously unselected package fonts-dejavu-core. 152s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 152s Unpacking fonts-dejavu-core (2.37-8build1) ... 152s Selecting previously unselected package fontconfig-config. 152s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 152s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 152s Selecting previously unselected package libfontconfig1:amd64. 152s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 152s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 152s Selecting previously unselected package fontconfig. 152s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 152s Unpacking fontconfig (2.17.1-3ubuntu1) ... 152s Selecting previously unselected package fonts-font-awesome. 152s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 152s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 152s Selecting previously unselected package fonts-glyphicons-halflings. 152s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 152s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 152s Selecting previously unselected package fonts-mathjax. 152s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 152s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 152s Selecting previously unselected package gdal-data. 152s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ... 152s Unpacking gdal-data (3.12.1+dfsg-1) ... 152s Selecting previously unselected package gdal-plugins:amd64. 152s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 152s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 152s Selecting previously unselected package javascript-common. 152s Preparing to unpack .../010-javascript-common_12+nmu1_all.deb ... 152s Unpacking javascript-common (12+nmu1) ... 152s Selecting previously unselected package libabsl20260107:amd64. 152s Preparing to unpack .../011-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 152s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 152s Selecting previously unselected package libaec0:amd64. 152s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ... 152s Unpacking libaec0:amd64 (1.1.5-1) ... 152s Selecting previously unselected package libaom3:amd64. 152s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ... 152s Unpacking libaom3:amd64 (3.13.1-2) ... 152s Selecting previously unselected package libblas3:amd64. 152s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ... 152s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 152s Selecting previously unselected package libgfortran5:amd64. 152s Preparing to unpack .../015-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 152s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 153s Selecting previously unselected package liblapack3:amd64. 153s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 153s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 153s Selecting previously unselected package libarpack2t64:amd64. 153s Preparing to unpack .../017-libarpack2t64_3.9.1-6_amd64.deb ... 153s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 153s Selecting previously unselected package libsuperlu7:amd64. 153s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 153s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 153s Selecting previously unselected package libarmadillo15. 153s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 153s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 153s Selecting previously unselected package libdav1d7:amd64. 153s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ... 153s Unpacking libdav1d7:amd64 (1.5.3-1) ... 153s Selecting previously unselected package libgav1-2:amd64. 153s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ... 153s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 153s Selecting previously unselected package libjpeg-turbo8:amd64. 153s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 153s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 153s Selecting previously unselected package libjpeg8:amd64. 153s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_amd64.deb ... 153s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 153s Selecting previously unselected package libyuv0:amd64. 153s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ... 153s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 153s Selecting previously unselected package libavif16:amd64. 153s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ... 153s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 153s Selecting previously unselected package libsnappy1v5:amd64. 153s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ... 153s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 153s Selecting previously unselected package libblosc1:amd64. 153s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ... 153s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 153s Selecting previously unselected package libpixman-1-0:amd64. 153s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ... 153s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 153s Selecting previously unselected package libxcb-render0:amd64. 153s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 153s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 153s Selecting previously unselected package libxcb-shm0:amd64. 153s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 153s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 153s Selecting previously unselected package libxrender1:amd64. 153s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_amd64.deb ... 153s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 153s Selecting previously unselected package libcairo2:amd64. 153s Preparing to unpack .../032-libcairo2_1.18.4-3_amd64.deb ... 153s Unpacking libcairo2:amd64 (1.18.4-3) ... 153s Selecting previously unselected package libcfitsio10t64:amd64. 153s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_amd64.deb ... 153s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 153s Selecting previously unselected package libdatrie1:amd64. 153s Preparing to unpack .../034-libdatrie1_0.2.14-1_amd64.deb ... 153s Unpacking libdatrie1:amd64 (0.2.14-1) ... 153s Selecting previously unselected package libde265-0:amd64. 153s Preparing to unpack .../035-libde265-0_1.0.16-1build1_amd64.deb ... 153s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 153s Selecting previously unselected package libdeflate0:amd64. 153s Preparing to unpack .../036-libdeflate0_1.23-2_amd64.deb ... 153s Unpacking libdeflate0:amd64 (1.23-2) ... 153s Selecting previously unselected package libfyba0t64:amd64. 153s Preparing to unpack .../037-libfyba0t64_4.1.1-11build2_amd64.deb ... 153s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 153s Selecting previously unselected package libminizip1t64:amd64. 153s Preparing to unpack .../038-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 153s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 153s Selecting previously unselected package libfreexl1:amd64. 153s Preparing to unpack .../039-libfreexl1_2.0.0-1build3_amd64.deb ... 153s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 153s Selecting previously unselected package libgeos3.14.1:amd64. 153s Preparing to unpack .../040-libgeos3.14.1_3.14.1-2_amd64.deb ... 153s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 153s Selecting previously unselected package libgeos-c1t64:amd64. 153s Preparing to unpack .../041-libgeos-c1t64_3.14.1-2_amd64.deb ... 153s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 153s Selecting previously unselected package proj-data. 153s Preparing to unpack .../042-proj-data_9.7.1-1_all.deb ... 153s Unpacking proj-data (9.7.1-1) ... 153s Selecting previously unselected package libjbig0:amd64. 153s Preparing to unpack .../043-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 153s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 153s Selecting previously unselected package liblerc4:amd64. 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package libpaper2:amd64. 154s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_amd64.deb ... 154s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 154s Selecting previously unselected package libpaper-utils. 154s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 154s Unpacking libpaper-utils (2.2.5-0.3build1) ... 154s Selecting previously unselected package libsm6:amd64. 154s Preparing to unpack .../109-libsm6_2%3a1.2.6-1_amd64.deb ... 154s Unpacking libsm6:amd64 (2:1.2.6-1) ... 154s Selecting previously unselected package libtcl8.6:amd64. 154s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 154s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 154s Selecting previously unselected package libxft2:amd64. 154s Preparing to unpack .../111-libxft2_2.3.6-1build2_amd64.deb ... 154s Unpacking libxft2:amd64 (2.3.6-1build2) ... 154s Selecting previously unselected package libxss1:amd64. 154s Preparing to unpack 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.../129-r-cran-glue_1.8.0-1_amd64.deb ... 155s Unpacking r-cran-glue (1.8.0-1) ... 155s Selecting previously unselected package r-cran-rlang. 155s Preparing to unpack .../130-r-cran-rlang_1.1.5-3_amd64.deb ... 155s Unpacking r-cran-rlang (1.1.5-3) ... 155s Selecting previously unselected package r-cran-lifecycle. 155s Preparing to unpack .../131-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 155s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 155s Selecting previously unselected package r-cran-magrittr. 155s Preparing to unpack .../132-r-cran-magrittr_2.0.3-1_amd64.deb ... 155s Unpacking r-cran-magrittr (2.0.3-1) ... 155s Selecting previously unselected package r-cran-utf8. 155s Preparing to unpack .../133-r-cran-utf8_1.2.4-1_amd64.deb ... 155s Unpacking r-cran-utf8 (1.2.4-1) ... 155s Selecting previously unselected package r-cran-vctrs. 155s Preparing to unpack .../134-r-cran-vctrs_0.6.5-1_amd64.deb ... 157s Unpacking r-cran-vctrs (0.6.5-1) ... 157s Selecting previously unselected package r-cran-pillar. 157s Preparing to unpack .../135-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 157s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-r6. 157s Preparing to unpack .../136-r-cran-r6_2.6.1-1_all.deb ... 157s Unpacking r-cran-r6 (2.6.1-1) ... 157s Selecting previously unselected package r-cran-fansi. 157s Preparing to unpack .../137-r-cran-fansi_1.0.6-2_amd64.deb ... 157s Unpacking r-cran-fansi (1.0.6-2) ... 157s Selecting previously unselected package r-cran-pkgconfig. 157s Preparing to unpack .../138-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 157s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 157s Selecting previously unselected package r-cran-tibble. 157s Preparing to unpack .../139-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 157s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 157s Selecting previously unselected package r-cran-withr. 157s Preparing to unpack .../140-r-cran-withr_3.0.2+dfsg-1_all.deb ... 157s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 157s Selecting previously unselected package r-cran-tidyselect. 157s Preparing to unpack .../141-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 157s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-dplyr. 157s Preparing to unpack .../142-r-cran-dplyr_1.1.4-4_amd64.deb ... 157s Unpacking r-cran-dplyr (1.1.4-4) ... 157s Selecting previously unselected package r-cran-purrr. 157s Preparing to unpack .../143-r-cran-purrr_1.0.4-1_amd64.deb ... 157s Unpacking r-cran-purrr (1.0.4-1) ... 157s Selecting previously unselected package r-cran-mass. 157s Preparing to unpack .../144-r-cran-mass_7.3-65-1_amd64.deb ... 157s Unpacking r-cran-mass (7.3-65-1) ... 157s Selecting previously unselected package r-cran-class. 157s Preparing to unpack .../145-r-cran-class_7.3-23-1_amd64.deb ... 157s Unpacking r-cran-class (7.3-23-1) ... 157s Selecting previously unselected package r-cran-proxy. 157s Preparing to unpack .../146-r-cran-proxy_0.4-27-1_amd64.deb ... 157s Unpacking r-cran-proxy (0.4-27-1) ... 157s Selecting previously unselected package r-cran-e1071. 157s Preparing to unpack .../147-r-cran-e1071_1.7-17-1_amd64.deb ... 157s Unpacking r-cran-e1071 (1.7-17-1) ... 157s Selecting previously unselected package r-cran-kernsmooth. 157s Preparing to unpack .../148-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 157s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 157s Selecting previously unselected package r-cran-classint. 157s Preparing to unpack .../149-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 157s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 157s Selecting previously unselected package r-cran-dbi. 157s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ... 157s Unpacking r-cran-dbi (1.2.3-1build1) ... 157s Selecting previously unselected package r-cran-littler. 157s Preparing to unpack .../151-r-cran-littler_0.3.21-2_amd64.deb ... 157s Unpacking r-cran-littler (0.3.21-2) ... 157s Selecting previously unselected package r-cran-pkgkitten. 157s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 157s Unpacking r-cran-pkgkitten (0.2.4-1) ... 157s Selecting previously unselected package r-cran-rcpp. 157s Preparing to unpack .../153-r-cran-rcpp_1.1.0-1_amd64.deb ... 157s Unpacking r-cran-rcpp (1.1.0-1) ... 157s Selecting previously unselected package r-cran-wk. 157s Preparing to unpack .../154-r-cran-wk_0.9.4-1_amd64.deb ... 157s Unpacking r-cran-wk (0.9.4-1) ... 157s Selecting previously unselected package r-cran-s2. 157s Preparing to unpack .../155-r-cran-s2_1.1.9-1build1_amd64.deb ... 157s Unpacking r-cran-s2 (1.1.9-1build1) ... 157s Selecting previously unselected package r-cran-units. 157s Preparing to unpack .../156-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 157s Unpacking r-cran-units (0.8-7+dfsg-2) ... 157s Selecting previously unselected package r-cran-sf. 157s Preparing to unpack .../157-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 157s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 157s Selecting previously unselected package r-cran-areal. 157s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 157s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 157s Selecting previously unselected package r-cran-sys. 157s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 157s Unpacking r-cran-sys (3.4.3-1) ... 157s Selecting previously unselected package r-cran-askpass. 157s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 157s Unpacking r-cran-askpass (1.2.1-1) ... 157s Selecting previously unselected package r-cran-base64enc. 157s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 157s Unpacking r-cran-base64enc (0.1-3-3build1) ... 157s Selecting previously unselected package r-cran-bdsmatrix. 157s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 157s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 157s Selecting previously unselected package r-cran-brio. 157s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 157s Unpacking r-cran-brio (1.1.5-1) ... 157s Selecting previously unselected package r-cran-fastmap. 157s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 157s Unpacking r-cran-fastmap (1.2.0-1) ... 157s Selecting previously unselected package r-cran-cachem. 157s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 157s Unpacking r-cran-cachem (1.1.0-1) ... 157s Selecting previously unselected package r-cran-digest. 157s Preparing to unpack .../166-r-cran-digest_0.6.39-1_amd64.deb ... 157s Unpacking r-cran-digest (0.6.39-1) ... 157s Selecting previously unselected package r-cran-htmltools. 157s Preparing to unpack .../167-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 157s Unpacking r-cran-htmltools (0.5.8.1-1) ... 157s Selecting previously unselected package r-cran-jquerylib. 157s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 157s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 157s Selecting previously unselected package r-cran-jsonlite. 157s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 157s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-memoise. 157s Preparing to unpack .../170-r-cran-memoise_2.0.1-1build1_all.deb ... 157s Unpacking r-cran-memoise (2.0.1-1build1) ... 157s Selecting previously unselected package r-cran-mime. 157s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 157s Unpacking r-cran-mime (0.12-2) ... 157s Selecting previously unselected package r-cran-fs. 157s Preparing to unpack .../172-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 157s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 157s Selecting previously unselected package r-cran-rappdirs. 157s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 157s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 157s Selecting previously unselected package r-cran-sass. 157s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 157s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 157s Selecting previously unselected package r-cran-bslib. 157s Preparing to unpack .../175-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 157s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 157s Selecting previously unselected package r-cran-cairo. 157s Preparing to unpack .../176-r-cran-cairo_1.6-2-1_amd64.deb ... 157s Unpacking r-cran-cairo (1.6-2-1) ... 157s Selecting previously unselected package r-cran-ps. 157s Preparing to unpack .../177-r-cran-ps_1.9.0-1_amd64.deb ... 157s Unpacking r-cran-ps (1.9.0-1) ... 157s Selecting previously unselected package r-cran-processx. 157s Preparing to unpack .../178-r-cran-processx_3.8.6-1_amd64.deb ... 157s Unpacking r-cran-processx (3.8.6-1) ... 157s Selecting previously unselected package r-cran-callr. 157s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 157s Unpacking r-cran-callr (3.7.6-1) ... 157s Selecting previously unselected package r-cran-cftime. 157s Preparing to unpack .../180-r-cran-cftime_1.7.2-1_all.deb ... 157s Unpacking r-cran-cftime (1.7.2-1) ... 157s Selecting previously unselected package r-cran-cluster. 157s Preparing to unpack .../181-r-cran-cluster_2.1.8.1-1_amd64.deb ... 157s Unpacking r-cran-cluster (2.1.8.1-1) ... 157s Selecting previously unselected package r-cran-clue. 157s Preparing to unpack .../182-r-cran-clue_0.3-66-1_amd64.deb ... 157s Unpacking r-cran-clue (0.3-66-1) ... 157s Selecting previously unselected package r-cran-codetools. 157s Preparing to unpack .../183-r-cran-codetools_0.2-20-1build1_all.deb ... 157s Unpacking r-cran-codetools (0.2-20-1build1) ... 157s Selecting previously unselected package r-cran-collapse. 157s Preparing to unpack .../184-r-cran-collapse_2.1.0-1_amd64.deb ... 157s Unpacking r-cran-collapse (2.1.0-1) ... 157s Selecting previously unselected package r-cran-commonmark. 157s Preparing to unpack .../185-r-cran-commonmark_1.9.5-1_amd64.deb ... 157s Unpacking r-cran-commonmark (1.9.5-1) ... 157s Selecting previously unselected package r-cran-lazyeval. 157s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 157s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 157s Selecting previously unselected package r-cran-rex. 157s Preparing to unpack .../187-r-cran-rex_1.2.1-1build1_all.deb ... 157s Unpacking r-cran-rex (1.2.1-1build1) ... 157s Selecting previously unselected package r-cran-curl. 157s Preparing to unpack .../188-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 157s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-openssl. 157s Preparing to unpack .../189-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 157s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 157s Selecting previously unselected package r-cran-httr. 157s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 157s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 157s Selecting previously unselected package r-cran-crayon. 157s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ... 157s Unpacking r-cran-crayon (1.5.3-1) ... 157s Selecting previously unselected package r-cran-yaml. 157s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_amd64.deb ... 157s Unpacking r-cran-yaml (2.3.10-1) ... 157s Selecting previously unselected package r-cran-covr. 157s Preparing to unpack .../193-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 157s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 157s Selecting previously unselected package r-cran-cpp11. 157s Preparing to unpack .../194-r-cran-cpp11_0.5.3-1_all.deb ... 157s Unpacking r-cran-cpp11 (0.5.3-1) ... 157s Selecting previously unselected package r-cran-cubelyr. 157s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 157s Unpacking r-cran-cubelyr (1.0.2-1) ... 157s Selecting previously unselected package r-cran-deldir. 157s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 157s Unpacking r-cran-deldir (2.0-4-1build1) ... 157s Selecting previously unselected package r-cran-desc. 157s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 157s Unpacking r-cran-desc (1.4.3-1) ... 157s Selecting previously unselected package r-cran-diffobj. 157s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 157s Unpacking r-cran-diffobj (0.3.5-1build1) ... 157s Selecting previously unselected package r-cran-evaluate. 157s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 157s Unpacking r-cran-evaluate (1.0.3-1) ... 157s Selecting previously unselected package r-cran-lattice. 157s Preparing to unpack .../200-r-cran-lattice_0.22-7-1_amd64.deb ... 157s Unpacking r-cran-lattice (0.22-7-1) ... 157s Selecting previously unselected package r-cran-sp. 157s Preparing to unpack .../201-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 157s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 157s Selecting previously unselected package r-cran-terra. 157s Preparing to unpack .../202-r-cran-terra_1.8-70-1build2_amd64.deb ... 157s Unpacking r-cran-terra (1.8-70-1build2) ... 157s Selecting previously unselected package r-cran-raster. 157s Preparing to unpack .../203-r-cran-raster_3.6-31-2_amd64.deb ... 157s Unpacking r-cran-raster (3.6-31-2) ... 157s Selecting previously unselected package r-cran-exactextractr. 157s Preparing to unpack .../204-r-cran-exactextractr_0.10.0-1build2_amd64.deb ... 157s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 157s Selecting previously unselected package r-cran-farver. 157s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 157s Unpacking r-cran-farver (2.1.2-1) ... 157s Selecting previously unselected package r-cran-fnn. 157s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 157s Unpacking r-cran-fnn (1.1.4.1-1) ... 157s Selecting previously unselected package r-cran-fontawesome. 157s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 157s Unpacking r-cran-fontawesome (0.5.3-1) ... 157s Selecting previously unselected package r-cran-formula. 157s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 157s Unpacking r-cran-formula (1.2-5-1) ... 157s Selecting previously unselected package r-cran-globals. 157s Preparing to unpack .../209-r-cran-globals_0.18.0-1_all.deb ... 157s Unpacking r-cran-globals (0.18.0-1) ... 157s Selecting previously unselected package r-cran-listenv. 157s Preparing to unpack .../210-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 157s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-parallelly. 157s Preparing to unpack .../211-r-cran-parallelly_1.42.0-1_amd64.deb ... 157s Unpacking r-cran-parallelly (1.42.0-1) ... 157s Selecting previously unselected package r-cran-future. 157s Preparing to unpack .../212-r-cran-future_1.34.0+dfsg-1_all.deb ... 157s Unpacking r-cran-future (1.34.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-future.apply. 157s Preparing to unpack .../213-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 157s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 157s Selecting previously unselected package r-cran-gtable. 157s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 157s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 157s Selecting previously unselected package r-cran-isoband. 157s Preparing to unpack .../215-r-cran-isoband_0.2.7-1_amd64.deb ... 157s Unpacking r-cran-isoband (0.2.7-1) ... 157s Selecting previously unselected package r-cran-nlme. 157s Preparing to unpack .../216-r-cran-nlme_3.1.168-1_amd64.deb ... 157s Unpacking r-cran-nlme (3.1.168-1) ... 157s Selecting previously unselected package r-cran-matrix. 157s Preparing to unpack .../217-r-cran-matrix_1.7-4-1_amd64.deb ... 157s Unpacking r-cran-matrix (1.7-4-1) ... 157s Selecting previously unselected package r-cran-mgcv. 157s Preparing to unpack .../218-r-cran-mgcv_1.9-4-1_amd64.deb ... 157s Unpacking r-cran-mgcv (1.9-4-1) ... 157s Selecting previously unselected package r-cran-labeling. 157s Preparing to unpack .../219-r-cran-labeling_0.4.3-1_all.deb ... 157s Unpacking r-cran-labeling (0.4.3-1) ... 157s Selecting previously unselected package r-cran-rcolorbrewer. 157s Preparing to unpack .../220-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 157s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 157s Selecting previously unselected package r-cran-viridislite. 157s Preparing to unpack .../221-r-cran-viridislite_0.4.2-2_all.deb ... 157s Unpacking r-cran-viridislite (0.4.2-2) ... 157s Selecting previously unselected package r-cran-scales. 157s Preparing to unpack .../222-r-cran-scales_1.4.0-1_all.deb ... 157s Unpacking r-cran-scales (1.4.0-1) ... 157s Selecting previously unselected package r-cran-ggplot2. 157s Preparing to unpack .../223-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 157s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-tweenr. 157s Preparing to unpack .../224-r-cran-tweenr_2.0.3-1_amd64.deb ... 157s Unpacking r-cran-tweenr (2.0.3-1) ... 157s Selecting previously unselected package r-cran-polyclip. 157s Preparing to unpack .../225-r-cran-polyclip_1.10-7-1_amd64.deb ... 157s Unpacking r-cran-polyclip (1.10-7-1) ... 157s Selecting previously unselected package r-cran-systemfonts. 157s Preparing to unpack .../226-r-cran-systemfonts_1.2.1-1_amd64.deb ... 157s Unpacking r-cran-systemfonts (1.2.1-1) ... 157s Selecting previously unselected package r-cran-rcppeigen. 157s Preparing to unpack .../227-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 157s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 157s Selecting previously unselected package r-cran-ggforce. 157s Preparing to unpack .../228-r-cran-ggforce_0.4.2-1_amd64.deb ... 157s Unpacking r-cran-ggforce (0.4.2-1) ... 157s Selecting previously unselected package r-cran-stringi. 157s Preparing to unpack .../229-r-cran-stringi_1.8.4-1build2_amd64.deb ... 157s Unpacking r-cran-stringi (1.8.4-1build2) ... 157s Selecting previously unselected package r-cran-stringr. 157s Preparing to unpack .../230-r-cran-stringr_1.5.1-1_all.deb ... 157s Unpacking r-cran-stringr (1.5.1-1) ... 157s Selecting previously unselected package r-cran-ggthemes. 157s Preparing to unpack .../231-r-cran-ggthemes_5.2.0-1_all.deb ... 157s Unpacking r-cran-ggthemes (5.2.0-1) ... 157s Selecting previously unselected package r-cran-goftest. 157s Preparing to unpack .../232-r-cran-goftest_1.2-3-1build1_amd64.deb ... 157s Unpacking r-cran-goftest (1.2-3-1build1) ... 157s Selecting previously unselected package r-cran-gridextra. 157s Preparing to unpack .../233-r-cran-gridextra_2.3-3build2_all.deb ... 157s Unpacking r-cran-gridextra (2.3-3build2) ... 157s Selecting previously unselected package r-cran-zoo. 157s Preparing to unpack .../234-r-cran-zoo_1.8-15-1_amd64.deb ... 157s Unpacking r-cran-zoo (1.8-15-1) ... 157s Selecting previously unselected package r-cran-sftime. 157s Preparing to unpack .../235-r-cran-sftime_0.2-0-6_all.deb ... 157s Unpacking r-cran-sftime (0.2-0-6) ... 157s Selecting previously unselected package r-cran-xts. 157s Preparing to unpack .../236-r-cran-xts_0.14.1-1_amd64.deb ... 157s Unpacking r-cran-xts (0.14.1-1) ... 157s Selecting previously unselected package r-cran-intervals. 157s Preparing to unpack .../237-r-cran-intervals_0.15.5-1_amd64.deb ... 157s Unpacking r-cran-intervals (0.15.5-1) ... 157s Selecting previously unselected package r-cran-spacetime. 157s Preparing to unpack .../238-r-cran-spacetime_1.3-3-2_all.deb ... 157s Unpacking r-cran-spacetime (1.3-3-2) ... 157s Selecting previously unselected package r-cran-stars. 157s Preparing to unpack .../239-r-cran-stars_0.6-8-1_all.deb ... 157s Unpacking r-cran-stars (0.6-8-1) ... 157s Selecting previously unselected package r-cran-gstat. 157s Preparing to unpack .../240-r-cran-gstat_2.1-3-2_amd64.deb ... 157s Unpacking r-cran-gstat (2.1-3-2) ... 157s Selecting previously unselected package r-cran-xfun. 157s Preparing to unpack .../241-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 157s Unpacking r-cran-xfun (0.55+dfsg-1) ... 157s Selecting previously unselected package r-cran-highr. 157s Preparing to unpack .../242-r-cran-highr_0.11+dfsg-1_all.deb ... 157s Unpacking r-cran-highr (0.11+dfsg-1) ... 157s Selecting previously unselected package r-cran-later. 157s Preparing to unpack .../243-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 157s Unpacking r-cran-later (1.4.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-promises. 157s Preparing to unpack .../244-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 157s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 157s Selecting previously unselected package r-cran-httpuv. 157s Preparing to unpack .../245-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 157s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 157s Selecting previously unselected package libjs-mathjax. 158s Preparing to unpack .../246-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 158s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 158s Selecting previously unselected package r-cran-knitr. 158s Preparing to unpack .../247-r-cran-knitr_1.51+dfsg-1_all.deb ... 158s Unpacking r-cran-knitr (1.51+dfsg-1) ... 158s Selecting previously unselected package r-cran-lmtest. 158s Preparing to unpack .../248-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 158s Unpacking r-cran-lmtest (0.9.40-1build1) ... 158s Selecting previously unselected package r-cran-lwgeom. 158s Preparing to unpack .../249-r-cran-lwgeom_0.2-14-1_amd64.deb ... 158s Unpacking r-cran-lwgeom (0.2-14-1) ... 158s Selecting previously unselected package r-cran-maps. 158s Preparing to unpack .../250-r-cran-maps_3.4.2.1-1_amd64.deb ... 158s Unpacking r-cran-maps (3.4.2.1-1) ... 158s Selecting previously unselected package r-cran-mapdata. 158s Preparing to unpack .../251-r-cran-mapdata_2.3.1-1_amd64.deb ... 158s Unpacking r-cran-mapdata (2.3.1-1) ... 158s Selecting previously unselected package r-cran-misctools. 158s Preparing to unpack .../252-r-cran-misctools_0.6-28-1_all.deb ... 158s Unpacking r-cran-misctools (0.6-28-1) ... 158s Selecting previously unselected package r-cran-sandwich. 158s Preparing to unpack .../253-r-cran-sandwich_3.1-1-1_all.deb ... 158s Unpacking r-cran-sandwich (3.1-1-1) ... 158s Selecting previously unselected package r-cran-maxlik. 158s Preparing to unpack .../254-r-cran-maxlik_1.5-2.2-1_all.deb ... 158s Unpacking r-cran-maxlik (1.5-2.2-1) ... 158s Selecting previously unselected package r-cran-rnetcdf. 158s Preparing to unpack .../255-r-cran-rnetcdf_2.11-1-1_amd64.deb ... 158s Unpacking r-cran-rnetcdf (2.11-1-1) ... 158s Selecting previously unselected package r-cran-tidyr. 158s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 158s Unpacking r-cran-tidyr (1.3.1-1) ... 158s Selecting previously unselected package r-cran-ncmeta. 158s Preparing to unpack .../257-r-cran-ncmeta_0.4.0-1_all.deb ... 158s Unpacking r-cran-ncmeta (0.4.0-1) ... 158s Selecting previously unselected package r-cran-ncdfgeom. 158s Preparing to unpack .../258-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 158s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 158s Selecting previously unselected package r-cran-pbapply. 158s Preparing to unpack .../259-r-cran-pbapply_1.7-2-1_all.deb ... 158s Unpacking r-cran-pbapply (1.7-2-1) ... 158s Selecting previously unselected package r-cran-pcict. 158s Preparing to unpack .../260-r-cran-pcict_0.5-4.4-1_amd64.deb ... 158s Unpacking r-cran-pcict (0.5-4.4-1) ... 158s Selecting previously unselected package r-cran-pkgbuild. 158s Preparing to unpack .../261-r-cran-pkgbuild_1.4.8-1_all.deb ... 158s Unpacking r-cran-pkgbuild (1.4.8-1) ... 158s Selecting previously unselected package r-cran-rprojroot. 158s Preparing to unpack .../262-r-cran-rprojroot_2.1.1-1_all.deb ... 158s Unpacking r-cran-rprojroot (2.1.1-1) ... 158s Selecting previously unselected package r-cran-pkgload. 158s Preparing to unpack .../263-r-cran-pkgload_1.4.1-1_all.deb ... 158s Unpacking r-cran-pkgload (1.4.1-1) ... 158s Selecting previously unselected package r-cran-rbibutils. 158s Preparing to unpack .../264-r-cran-rbibutils_2.3-1_amd64.deb ... 158s Unpacking r-cran-rbibutils (2.3-1) ... 158s Selecting previously unselected package r-cran-rdpack. 158s Preparing to unpack .../265-r-cran-rdpack_2.6.3-1_all.deb ... 158s Unpacking r-cran-rdpack (2.6.3-1) ... 158s Selecting previously unselected package r-cran-plm. 158s Preparing to unpack .../266-r-cran-plm_2.6-7-1_all.deb ... 158s Unpacking r-cran-plm (2.6-7-1) ... 158s Selecting previously unselected package r-cran-praise. 158s Preparing to unpack .../267-r-cran-praise_1.0.0-4build2_all.deb ... 158s Unpacking r-cran-praise (1.0.0-4build2) ... 158s Selecting previously unselected package r-cran-randomforest. 158s Preparing to unpack .../268-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 158s Unpacking r-cran-randomforest (4.7-1.2-1) ... 158s Selecting previously unselected package r-cran-tinytex. 158s Preparing to unpack .../269-r-cran-tinytex_0.58-1_all.deb ... 158s Unpacking r-cran-tinytex (0.58-1) ... 158s Selecting previously unselected package libjs-modernizr. 158s Preparing to unpack .../270-libjs-modernizr_3.13.0-0.1build1_all.deb ... 158s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 158s Selecting previously unselected package r-cran-xtable. 158s Preparing to unpack .../271-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 158s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 158s Selecting previously unselected package r-cran-sourcetools. 158s Preparing to unpack .../272-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 158s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 158s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 158s Preparing to unpack .../273-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 158s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 158s Selecting previously unselected package r-cran-shiny. 158s Preparing to unpack .../274-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 158s Unpacking 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r-cran-sf (1.0-19+dfsg-2build2) ... 162s Setting up r-cran-stars (0.6-8-1) ... 162s Setting up r-cran-sftime (0.2-0-6) ... 162s Setting up r-cran-areal (0.1.8+dfsg-2) ... 162s Setting up r-cran-gstat (2.1-3-2) ... 162s Setting up r-cran-raster (3.6-31-2) ... 162s Setting up r-cran-lwgeom (0.2-14-1) ... 162s Setting up r-cran-exactextractr (0.10.0-1build2) ... 162s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 162s Processing triggers for libc-bin (2.42-2ubuntu4) ... 162s Processing triggers for man-db (2.13.1-1) ... 162s Processing triggers for install-info (7.2-5) ... 163s autopkgtest [07:55:51]: test run-unit-test: [----------------------- 163s BEGIN TEST aggregate.R 163s 163s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 163s Copyright (C) 2025 The R Foundation for Statistical Computing 163s Platform: x86_64-pc-linux-gnu 163s 163s R is free software and comes with ABSOLUTELY NO WARRANTY. 163s You are welcome to redistribute it under certain conditions. 163s Type 'license()' or 'licence()' for distribution details. 163s 163s R is a collaborative project with many contributors. 163s Type 'contributors()' for more information and 163s 'citation()' on how to cite R or R packages in publications. 163s 163s Type 'demo()' for some demos, 'help()' for on-line help, or 163s 'help.start()' for an HTML browser interface to help. 163s Type 'q()' to quit R. 163s 163s > ## IGNORE_RDIFF_BEGIN 163s > library(stars) 163s Loading required package: abind 163s Loading required package: sf 164s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 164s > ## IGNORE_RDIFF_END 164s > 164s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 164s + data(air) # this loads several datasets in .GlobalEnv 164s + dim(air) 164s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 164s + 164s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 164s + n = c(3,3)) 164s + 164s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 164s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 164s + } 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 164s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 164s dimension(s): 164s from to offset delta refsys point 164s station 1 70 NA NA WGS 84 TRUE 164s time 1 4383 1998-01-01 1 days Date FALSE 164s values 164s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 164s time NULL 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 164s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 164s dimension(s): 164s from to offset delta refsys point 164s geometry 1 9 NA NA WGS 84 FALSE 164s time 1 4383 1998-01-01 1 days Date FALSE 164s values 164s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 164s time NULL 164s > 164s > # adapted from ?read_stars: 164s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 164s > st = st_as_stars(m) 164s > attr(st, "dimensions")$y$delta = -1 164s > attr(st, "dimensions")$y$offset = 12 164s > tm = as.Date("2019-02-19") + 1:6 164s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 164s > 164s > tmp = tempfile(fileext = ".tif") 164s > write_stars(st, tmp) 164s > 164s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 164s + nBufXSize = 2, nBufYSize = 2)), "foo")) 164s stars object with 3 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s foo 33 199.25 365.5 365.5 531.75 698 164s dimension(s): 164s from to offset delta refsys point x/y 164s x 1 2 0 5 WGS 84 FALSE [x] 164s y 1 2 12 -6 WGS 84 FALSE [y] 164s band 1 6 NA NA NA NA 164s > 164s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 164s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s A1 28 194.25 360.5 360.5 526.75 693 164s dimension(s): 164s from to offset delta refsys point 164s geom 1 4 NA NA WGS 84 FALSE 164s t 1 6 2019-02-20 1 days Date FALSE 164s values 164s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 164s t NULL 164s > (a = aggregate(st, sfc, mean)) 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s A1 28 194.25 360.5 360.5 526.75 693 164s dimension(s): 164s from to offset delta refsys point 164s geometry 1 4 NA NA WGS 84 FALSE 164s t 1 6 2019-02-20 1 days Date FALSE 164s values 164s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 164s t NULL 164s > 164s > tm0 = as.Date("2019-02-19") + -1:8 164s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 164s stars object with 3 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 164s A1 1 180.75 360.5 360.5 540.25 720 480 164s dimension(s): 164s from to offset delta refsys point x/y 164s time 1 10 2019-02-18 1 days Date NA 164s x 1 10 0 1 WGS 84 FALSE [x] 164s y 1 12 12 -1 WGS 84 FALSE [y] 164s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 164s stars object with 3 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s A1 1 180.75 360.5 360.5 540.25 720 164s dimension(s): 164s from to offset delta refsys point x/y 164s time 1 6 2019-02-20 1 days Date NA 164s x 1 10 0 1 WGS 84 FALSE [x] 164s y 1 12 12 -1 WGS 84 FALSE [y] 164s > yd = function(x) as.POSIXlt(x)$yday 164s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 164s stars object with 3 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s A1 1 180.75 360.5 360.5 540.25 720 164s dimension(s): 164s from to offset delta refsys point values x/y 164s geometry 1 6 NA NA NA NA 50,...,55 164s x 1 10 0 1 WGS 84 FALSE NULL [x] 164s y 1 12 12 -1 WGS 84 FALSE NULL [y] 164s > 164s > # with "by" geometry not overlapping x 164s > pt = st_point(c(-10,-10)) 164s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 164s Geometry set for 5 features 164s Geometry type: GEOMETRY 164s Dimension: XY 164s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 164s Geodetic CRS: WGS 84 164s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 164s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 164s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 164s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 164s POINT (-10 -10) 164s > (a = aggregate(st, sfc, mean)) 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 164s A1 28 194.25 360.5 360.5 526.75 693 6 164s dimension(s): 164s from to offset delta refsys point 164s geometry 1 5 NA NA WGS 84 FALSE 164s t 1 6 2019-02-20 1 days Date FALSE 164s values 164s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 164s t NULL 164s > (a = aggregate(st, st, mean)) 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s A1 1 180.75 360.5 360.5 540.25 720 164s dimension(s): 164s from to offset delta refsys point 164s geometry 1 120 NA NA WGS 84 FALSE 164s t 1 6 2019-02-20 1 days Date FALSE 164s values 164s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 164s t NULL 164s > 164s BEGIN TEST align.R 164s 164s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 164s Copyright (C) 2025 The R Foundation for Statistical Computing 164s Platform: x86_64-pc-linux-gnu 164s 164s R is free software and comes with ABSOLUTELY NO WARRANTY. 164s You are welcome to redistribute it under certain conditions. 164s Type 'license()' or 'licence()' for distribution details. 164s 164s R is a collaborative project with many contributors. 164s Type 'contributors()' for more information and 164s 'citation()' on how to cite R or R packages in publications. 164s 164s Type 'demo()' for some demos, 'help()' for on-line help, or 164s 'help.start()' for an HTML browser interface to help. 164s Type 'q()' to quit R. 164s 164s > suppressPackageStartupMessages(library(stars)) 165s > set.seed(1331) 165s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 165s Geometry set for 1 feature 165s Geometry type: POINT 165s Dimension: XY 165s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 165s Projected CRS: SIRGAS 2000 / UTM zone 25S 165s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 165s POINT (291430.8 9111430) 165s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 165s > 165s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 165s > plot(b, add = TRUE, col = NA, border = 'red') 165s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 165s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 165s > st_bbox(b) 165s xmin ymin xmax ymax 165s 297116.8 9119404.1 297786.8 9120074.1 165s > bba 165s xmin ymin xmax ymax 165s 297098.3 9119392.8 297810.8 9120076.8 165s > 165s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 165s > plot(b, col = 'red', add = TRUE) 165s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 165s > 165s > b0 = st_buffer(b, -100) 165s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 165s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 165s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 165s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 165s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 165s > plot(b, col = NA, border = 'red', add = TRUE) 165s > 165s > all.equal(bbb, bba) 165s [1] TRUE 165s > 165s BEGIN TEST area.R 165s 165s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 165s Copyright (C) 2025 The R Foundation for Statistical Computing 165s Platform: x86_64-pc-linux-gnu 165s 165s R is free software and comes with ABSOLUTELY NO WARRANTY. 165s You are welcome to redistribute it under certain conditions. 165s Type 'license()' or 'licence()' for distribution details. 165s 165s R is a collaborative project with many contributors. 165s Type 'contributors()' for more information and 165s 'citation()' on how to cite R or R packages in publications. 165s 165s Type 'demo()' for some demos, 'help()' for on-line help, or 165s 'help.start()' for an HTML browser interface to help. 165s Type 'q()' to quit R. 165s 165s > suppressPackageStartupMessages(library(stars)) 165s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 165s Missing coordinate reference system: assuming Cartesian coordinates 165s > x = read_stars(tif) 165s > (a = st_area(x[,1:5,1:5])) 165s stars object with 2 dimensions and 1 attribute 165s attribute(s): 165s Min. 1st Qu. Median Mean 3rd Qu. Max. 165s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 165s dimension(s): 165s from to offset delta refsys point x/y 165s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 165s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 165s > 165s > m = matrix(1:20, nrow = 5, ncol = 4) 165s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 165s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 165s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 165s stars object with 2 dimensions and 1 attribute 165s attribute(s): 165s Min. 1st Qu. Median Mean 3rd Qu. Max. 165s m 1 5.75 10.5 10.5 15.25 20 165s dimension(s): 165s from to point values x/y 165s x 1 5 FALSE [0,0.5),...,[4,5) [x] 165s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 165s > # image(r, axes = TRUE, col = grey((1:20)/20)) 165s > (a = st_area(r)) 165s stars object with 2 dimensions and 1 attribute 165s attribute(s): 165s Min. 1st Qu. Median Mean 3rd Qu. Max. 165s area 0.1 0.2 0.325 0.475 0.5 2 165s dimension(s): 165s from to point values x/y 165s x 1 5 FALSE [0,0.5),...,[4,5) [x] 165s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 165s > #plot(a, axes = TRUE) 165s > 165s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 165s > if (s5p != "") { 165s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 165s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 165s + if (inherits(nit.c[[1]], "units")) 165s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 165s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 165s + st_crs(nit.c) = 4326 165s + print((a <- st_area(nit.c[,1:5,1:5]))) 165s + # plot(a, axes = TRUE, border = NA) 165s + } 165s > 165s BEGIN TEST crop.R 165s 165s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 165s Copyright (C) 2025 The R Foundation for Statistical Computing 165s Platform: x86_64-pc-linux-gnu 165s 165s R is free software and comes with ABSOLUTELY NO WARRANTY. 165s You are welcome to redistribute it under certain conditions. 165s Type 'license()' or 'licence()' for distribution details. 165s 165s R is a collaborative project with many contributors. 165s Type 'contributors()' for more information and 165s 'citation()' on how to cite R or R packages in publications. 165s 165s Type 'demo()' for some demos, 'help()' for on-line help, or 165s 'help.start()' for an HTML browser interface to help. 165s Type 'q()' to quit R. 165s 166s > suppressPackageStartupMessages(library(stars)) 166s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 166s > x = read_stars(tif) 166s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 166s + 9111328.49619133)), .Names = c("x", "y")) 166s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 166s > image(x, axes = TRUE) 166s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 166s > 166s > bb = st_bbox(pts) 166s > (xx = x[bb]) 166s stars object with 3 dimensions and 1 attribute 166s attribute(s): 166s Min. 1st Qu. Median Mean 3rd Qu. Max. 166s L7_ETMs.tif 3 56 73 70.87303 89 255 166s dimension(s): 166s from to offset delta refsys point x/y 166s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 166s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 166s band 1 6 NA NA NA NA 166s > image(xx) 166s > plot(st_as_sfc(bb), add = TRUE, col = NA) 166s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 166s Sparse geometry binary predicate list of length 1, where the predicate 166s was `contains' 166s 1: 1 166s > 166s > image(x) 166s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 166s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 166s > plot(buf, add = TRUE) 166s > 166s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 166s + crs = st_crs(x)) 166s > image(x[buf]) 166s > plot(buf, add = TRUE, col = NA) 166s > image(x[buf,crop=FALSE]) 166s > plot(buf, add = TRUE, col = NA) 166s > 166s > plot(x, rgb = 1:3) 166s > 166s > # #638: 166s > l = st_as_stars(L7_ETMs) 166s > st_bbox(l) |> st_as_sfc() -> bb 166s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 166s > st_crop(l, b) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 167s L7_ETMs NA NA NA NaN NA NA 737088 167s dimension(s): 167s Warning message: 167s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 167s [,1] 167s [1,] FALSE 167s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 167s > st_crop(l, b) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 167s L7_ETMs NA NA NA NaN NA NA 737088 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > 167s Warning message: 167s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 167s BEGIN TEST curvilinear.R 167s 167s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 167s Copyright (C) 2025 The R Foundation for Statistical Computing 167s Platform: x86_64-pc-linux-gnu 167s 167s R is free software and comes with ABSOLUTELY NO WARRANTY. 167s You are welcome to redistribute it under certain conditions. 167s Type 'license()' or 'licence()' for distribution details. 167s 167s R is a collaborative project with many contributors. 167s Type 'contributors()' for more information and 167s 'citation()' on how to cite R or R packages in publications. 167s 167s Type 'demo()' for some demos, 'help()' for on-line help, or 167s 'help.start()' for an HTML browser interface to help. 167s Type 'q()' to quit R. 167s 167s > suppressPackageStartupMessages(library(stars)) 168s > 168s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 168s > if (s5p != "") { 168s + 168s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 168s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 168s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 168s + lat = read_stars(lat_ds) 168s + lon = read_stars(lon_ds) 168s + nit = read_stars(nit_ds) 168s + nit[[1]][nit[[1]] > 9e+36] = NA 168s + 168s + ll = setNames(c(lon, lat), c("x", "y")) 168s + nit.c0 = st_as_stars(nit, curvilinear = ll) 168s + 168s + # more direct method: 168s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 168s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 168s + if (inherits(nit.c[[1]], "units")) 168s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 168s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 168s + all.equal(nit.c0, nit.c) 168s + st_crs(nit.c) = 4326 168s + print(nit.c) 168s + 168s + if (FALSE && capabilities()["png"]) { 168s + png("nit1.png", 800, 800) 168s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 168s + maps::map('world', add = TRUE, col = 'red') 168s + dev.off() 168s + 168s + png("nit2.png", 800, 800) 168s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 168s + maps::map('world', add = TRUE, col = 'red') 168s + dev.off() 168s + 168s + nit.c = stars:::st_downsample(nit.c, 8) 168s + print(nit.c) 168s + 168s + png("nit3.png", 800, 800) 168s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 168s + maps::map('world', add = TRUE, col = 'red') 168s + dev.off() 168s + 168s + png("nit4.png", 800, 800) 168s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 168s + maps::map('world', add = TRUE, col = 'red') 168s + dev.off() 168s + } 168s + 168s + } 168s > 168s BEGIN TEST datasets.R 168s 168s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > suppressPackageStartupMessages(library(stars)) 168s > bcsd_obs 168s stars_proxy object with 2 attributes in 2 file(s): 168s $foo 168s [1] "[...]/bcsd_obs_1999.nc:pr" 168s 168s $bar 168s [1] "[...]/bcsd_obs_1999.nc:tas" 168s 168s dimension(s): 168s from to offset delta refsys values x/y 168s x 1 81 -85 0.125 NA NULL [x] 168s y 1 33 37.12 -0.125 NA NULL [y] 168s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 168s > L7_ETMs 168s stars_proxy object with 1 attribute in 1 file(s): 168s $L7_ETMs 168s [1] "[...]/L7_ETMs.tif" 168s 168s dimension(s): 168s from to offset delta refsys point x/y 168s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 168s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 168s band 1 6 NA NA NA NA 168s > if (require(starsdata, quietly = TRUE)) { 168s + print(stars_sentinel2) 168s + } 168s > 168s BEGIN TEST dimensions.R 168s 168s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > # https://github.com/r-spatial/stars/issues/295 168s > suppressPackageStartupMessages(library(stars)) 168s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 168s pr, tas, 168s > foo <- function(x, idx) stats::lowess(idx, x)$y 168s > 168s > timeline <- st_get_dimension_values(raw, "time") 168s > smooth = st_apply(raw, 168s + MARGIN = c("x", "y"), 168s + FUN = foo, 168s + idx = st_get_dimension_values(raw, "time") 168s + ) 169s > 169s > st_set_dimensions(smooth, 169s + which = "foo", 169s + values = st_get_dimension_values(raw, "time"), 169s + names = "time" 169s + ) 169s stars object with 3 dimensions and 2 attributes 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 169s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 169s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 169s dimension(s): 169s from to offset delta refsys values x/y 169s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 169s x 1 81 -85 0.125 NA NULL [x] 169s y 1 33 37.12 -0.125 NA NULL [y] 169s > 169s > raw %>% 169s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 169s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 169s stars object with 3 dimensions and 2 attributes 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 169s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 169s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 169s dimension(s): 169s from to offset delta refsys values x/y 169s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 169s x 1 81 -85 0.125 NA NULL [x] 169s y 1 33 37.12 -0.125 NA NULL [y] 169s > 169s BEGIN TEST downsample.R 169s 169s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 169s Copyright (C) 2025 The R Foundation for Statistical Computing 169s Platform: x86_64-pc-linux-gnu 169s 169s R is free software and comes with ABSOLUTELY NO WARRANTY. 169s You are welcome to redistribute it under certain conditions. 169s Type 'license()' or 'licence()' for distribution details. 169s 169s R is a collaborative project with many contributors. 169s Type 'contributors()' for more information and 169s 'citation()' on how to cite R or R packages in publications. 169s 169s Type 'demo()' for some demos, 'help()' for on-line help, or 169s 'help.start()' for an HTML browser interface to help. 169s Type 'q()' to quit R. 169s 169s > suppressPackageStartupMessages(library(stars)) 169s > m = matrix(1:121, 11, 11) 169s > m 169s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 169s [1,] 1 12 23 34 45 56 67 78 89 100 111 169s [2,] 2 13 24 35 46 57 68 79 90 101 112 169s [3,] 3 14 25 36 47 58 69 80 91 102 113 169s [4,] 4 15 26 37 48 59 70 81 92 103 114 169s [5,] 5 16 27 38 49 60 71 82 93 104 115 169s [6,] 6 17 28 39 50 61 72 83 94 105 116 169s [7,] 7 18 29 40 51 62 73 84 95 106 117 169s [8,] 8 19 30 41 52 63 74 85 96 107 118 169s [9,] 9 20 31 42 53 64 75 86 97 108 119 169s [10,] 10 21 32 43 54 65 76 87 98 109 120 169s [11,] 11 22 33 44 55 66 77 88 99 110 121 169s > s = st_as_stars(m) 169s > st_downsample(s, 1) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s A1 1 28.5 61 61 93.5 121 169s dimension(s): 169s from to offset delta point x/y 169s X1 1 6 0 2 FALSE [x] 169s X2 1 6 0 2 FALSE [y] 169s > st_downsample(s, 1)[[1]] 169s [,1] [,2] [,3] [,4] [,5] [,6] 169s [1,] 1 23 45 67 89 111 169s [2,] 3 25 47 69 91 113 169s [3,] 5 27 49 71 93 115 169s [4,] 7 29 51 73 95 117 169s [5,] 9 31 53 75 97 119 169s [6,] 11 33 55 77 99 121 169s > st_downsample(s, 1, offset = 1) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s A1 13 37 61 61 85 109 169s dimension(s): 169s from to offset delta point x/y 169s X1 1 5 1 2 FALSE [x] 169s X2 1 5 1 2 FALSE [y] 169s > st_downsample(s, 1, offset = 1)[[1]] 169s [,1] [,2] [,3] [,4] [,5] 169s [1,] 13 35 57 79 101 169s [2,] 15 37 59 81 103 169s [3,] 17 39 61 83 105 169s [4,] 19 41 63 85 107 169s [5,] 21 43 65 87 109 169s > st_downsample(s, 1, FUN = mean) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s A1 7 31 55 55 79 103 169s dimension(s): 169s from to offset delta point x/y 169s X1 1 5 0 2 FALSE [x] 169s X2 1 5 0 2 FALSE [y] 169s > st_downsample(s, 1, FUN = mean)[[1]] 169s [,1] [,2] [,3] [,4] [,5] 169s [1,] 7 29 51 73 95 169s [2,] 9 31 53 75 97 169s [3,] 11 33 55 77 99 169s [4,] 13 35 57 79 101 169s [5,] 15 37 59 81 103 169s > st_downsample(s, 1, offset = 1, FUN = mean) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s A1 19 43 67 67 91 115 169s dimension(s): 169s from to offset delta point x/y 169s X1 1 5 1 2 FALSE [x] 169s X2 1 5 1 2 FALSE [y] 169s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 169s [,1] [,2] [,3] [,4] [,5] 169s [1,] 18 40 62 84 106 169s [2,] 20 42 64 86 108 169s [3,] 22 44 66 88 110 169s [4,] 24 46 68 90 112 169s [5,] 26 48 70 92 114 169s > st_downsample(s, 1, offset = c(0,1)) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s A1 12 36.5 61 61 85.5 110 169s dimension(s): 169s from to offset delta point x/y 169s X1 1 6 0 2 FALSE [x] 169s X2 1 5 1 2 FALSE [y] 169s > st_downsample(s, 1, offset = c(0,1))[[1]] 169s [,1] [,2] [,3] [,4] [,5] 169s [1,] 12 34 56 78 100 169s [2,] 14 36 58 80 102 169s [3,] 16 38 60 82 104 169s [4,] 18 40 62 84 106 169s [5,] 20 42 64 86 108 169s [6,] 22 44 66 88 110 169s > 169s BEGIN TEST ee.R 169s 169s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 169s Copyright (C) 2025 The R Foundation for Statistical Computing 169s Platform: x86_64-pc-linux-gnu 169s 169s R is free software and comes with ABSOLUTELY NO WARRANTY. 169s You are welcome to redistribute it under certain conditions. 169s Type 'license()' or 'licence()' for distribution details. 169s 169s R is a collaborative project with many contributors. 169s Type 'contributors()' for more information and 169s 'citation()' on how to cite R or R packages in publications. 169s 169s Type 'demo()' for some demos, 'help()' for on-line help, or 169s 'help.start()' for an HTML browser interface to help. 169s Type 'q()' to quit R. 169s 169s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 169s > options(digits=15) 169s > suppressPackageStartupMessages(library(stars)) 170s > L = st_as_stars(L7_ETMs)[,,,1] 170s > set.seed(123432) 170s > st_bbox(L) |> 170s + st_as_sfc() |> 170s + st_centroid() |> 170s + st_buffer(50) |> 170s + st_sample(10) |> 170s + st_combine() |> 170s + st_convex_hull() -> ch 170s > if (interactive()) { 170s + plot(L, reset = FALSE) 170s + plot(ch, add = TRUE, border = 'red', col = NA) 170s + } 170s > if (FALSE) { 170s + e = st_extract(L, ch)[[1]] 170s + a = aggregate(L, ch, mean)[[1]] 170s + identical(e, a) # same code path 170s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 170s + all.equal(e, ee) 170s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 170s + all.equal(as.vector(ee), aw) 170s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 170s + all.equal(ee0, ee) # ?? 170s + } 170s > 170s BEGIN TEST extract.R 170s 170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > # Create 'stars' object 170s > set.seed(1331) 170s > suppressPackageStartupMessages(library(stars)) 170s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 170s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 170s > (r = st_as_stars(t(volcano))) 170s stars object with 2 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 170s A1 94 108 124 130.1879 150 195 732 170s dimension(s): 170s from to offset delta point x/y 170s X1 1 61 0 1 FALSE [x] 170s X2 1 99 0 1 FALSE [y] 170s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 170s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 170s > 170s > # Create points 170s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 170s > pnt = st_as_sf(pnt) 170s > 170s > # Extract - 'st_join' 170s > x = st_join(pnt, st_as_sf(r)) 170s > 170s > # Extract - 'st_extract' 170s > y = st_extract(r, pnt) 170s > 170s > # check there are NA's: 170s > any(is.na(x)) 170s [1] TRUE 170s > # Compare 170s > all.equal(x$A1, y[[1]]) 170s [1] TRUE 170s > 170s > ################################################ 170s > if (FALSE) { 170s + 170s + ## tic: segfaults 170s + # check equal results with stars_proxy: 170s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 170s + #all.equal(x$A1, y[[1]]) 170s + #all.equal(x, y) 170s + 170s + r = c(r, 2*r, 10*r) 170s + x = st_join(pnt, st_as_sf(r)) 170s + y = st_as_sf(st_extract(r, pnt)) 170s + all.equal(x, y) 170s + 170s + ## tic: segfaults 170s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 170s + #all.equal(st_as_sf(x), y) 170s + 170s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 170s + xp = read_stars(tif, proxy = TRUE) 170s + xm = read_stars(tif, proxy = FALSE) 170s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 170s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 170s + em = st_extract(xm, pts) 170s + if (utils::packageVersion("sf") >= "0.9-7") { 170s + ep = st_extract(xp, pts) 170s + print(all.equal(ep, em, check.attributes = TRUE)) 170s + } 170s + 170s + # two-attribute objects: 170s + library(stars) 170s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 170s + xp = read_stars(c(tif, tif), proxy = TRUE) 170s + xm = read_stars(c(tif, tif), proxy = FALSE) 170s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 170s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 170s + em = st_extract(xm, pts) 170s + if (utils::packageVersion("sf") >= "0.9-7") { 170s + ep = st_extract(xp, pts) 170s + print(all.equal(ep, em, check.attributes = TRUE)) 170s + } 170s + 170s + # single-attribute, single raster objects: 170s + tif1 = paste0(tempfile(), ".tif") 170s + write_stars(xm[1,,,1], "x.tif") 170s + xp = read_stars("x.tif", proxy = TRUE) 170s + xm = read_stars("x.tif", proxy = FALSE) 170s + em = st_extract(xm, pts) 170s + if (utils::packageVersion("sf") >= "0.9-7") { 170s + ep = st_extract(xp, pts) 170s + print(all.equal(ep, em, check.attributes = TRUE)) 170s + } 170s + 170s + # multiple-file attributes: 170s + x = c( 170s + "avhrr-only-v2.19810901.nc", 170s + "avhrr-only-v2.19810902.nc", 170s + "avhrr-only-v2.19810903.nc", 170s + "avhrr-only-v2.19810904.nc", 170s + "avhrr-only-v2.19810905.nc", 170s + "avhrr-only-v2.19810906.nc", 170s + "avhrr-only-v2.19810907.nc", 170s + "avhrr-only-v2.19810908.nc", 170s + "avhrr-only-v2.19810909.nc" 170s + ) 170s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 170s + if (!identical(file_list, "")) { 170s + y = read_stars(file_list, quiet = TRUE) 170s + print(y) 170s + st_crs(y) = "OGC:CRS84" 170s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 170s + em = st_extract(y, pts) 170s + 170s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 170s + print(y) 170s + st_crs(y) = "OGC:CRS84" 170s + if (utils::packageVersion("sf") >= "0.9-7") { 170s + ep = st_extract(y, pts) 170s + print(all.equal(em, ep)) 170s + } 170s + } 170s + 170s + # nearest & bilinear comparison: 170s + if (utils::packageVersion("sf") >= "0.9-7") { 170s + set.seed(12331) 170s + s = st_as_stars(matrix(rnorm(16), 4)) 170s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 170s + s1 = st_extract(s, pts, bilinear = FALSE) 170s + s2 = st_extract(s, pts, bilinear = TRUE) 170s + s1$s2 = s2[[1]] 170s + names(s1)[c(1,3)] = c("nearest", "bilinear") 170s + print(s1[sample(10000, 5),]) 170s + } 170s + } 170s > 170s BEGIN TEST gridtypes.R 170s 170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > suppressPackageStartupMessages(library(stars)) 170s > 170s > # regular, but not spatial: 170s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 170s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s X 1 5.25 9.5 9.5 13.75 18 170s dimension(s): 170s from to offset delta point values 170s a 1 3 1 1 FALSE NULL 170s b 1 3 1 1 FALSE NULL 170s band 1 2 NA NA FALSE foo, bar 170s > as.data.frame(st, add_max=FALSE)[1:4,] 171s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 171s dimensions table does not have x & y, nor an sfc dimension 171s a b band X 171s 1 1 1 foo 1 171s 2 2 1 foo 2 171s 3 3 1 foo 3 171s 4 1 2 foo 4 171s > try(x <- st_bbox(st)) # error 171s > 171s > # regular, geotransform: 171s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values x/y 171s x 1 3 1 1 FALSE NULL [x] 171s y 1 3 1 1 FALSE NULL [y] 171s band 1 2 NA NA FALSE foo, bar 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y band X 171s 1 1.5 1.5 foo 1 171s 2 2.5 1.5 foo 2 171s 3 3.5 1.5 foo 3 171s 4 1.5 2.5 foo 4 171s > as.data.frame(st, add_max=TRUE)[1:4,] 171s x y band x_max y_max X 171s 1 1 1 foo 2 2 1 171s 2 2 1 foo 3 2 2 171s 3 3 1 foo 4 2 3 171s 4 1 2 foo 2 3 4 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 1 1 4 4 171s > 171s > # rectilinear with offset given: 171s > xd = c(1, 2, 4) 171s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values x/y 171s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 171s y 1 3 1 1 FALSE NULL [y] 171s band 1 2 NA NA FALSE foo, bar 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y band X 171s 1 1.5 1.5 foo 1 171s 2 3.0 1.5 foo 2 171s 3 5.0 1.5 foo 3 171s 4 1.5 2.5 foo 4 171s > as.data.frame(st, add_max=TRUE)[1:4,] 171s x y band x_max y_max X 171s 1 1 1 foo 2 2 1 171s 2 2 1 foo 4 2 2 171s 3 4 1 foo 6 2 3 171s 4 1 2 foo 2 3 4 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 1 1 6 4 171s > 171s > # rectilinear with midpoints given: 171s > xd = c(1, 2, 4) 171s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values x/y 171s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 171s y 1 3 0.5 1 FALSE NULL [y] 171s band 1 2 NA NA FALSE foo, bar 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y band X 171s 1 1.00 1 foo 1 171s 2 2.25 1 foo 2 171s 3 4.00 1 foo 3 171s 4 1.00 2 foo 4 171s > as.data.frame(st, add_max=TRUE)[1:4,] 171s x y band x_max y_max X 171s 1 0.5 0.5 foo 1.5 1.5 1 171s 2 1.5 0.5 foo 3.0 1.5 2 171s 3 3.0 0.5 foo 5.0 1.5 3 171s 4 0.5 1.5 foo 1.5 2.5 4 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 0.5 0.5 5.0 3.5 171s > 171s > # rectilinear with midpoints given, point support 171s > xd = c(1, 2, 4) 171s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values x/y 171s x 1 3 NA NA TRUE 1, 2, 4 [x] 171s y 1 3 0.5 1 TRUE NULL [y] 171s band 1 2 NA NA TRUE foo, bar 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y band X 171s 1 1 1 foo 1 171s 2 2 1 foo 2 171s 3 4 1 foo 3 171s 4 1 2 foo 4 171s > as.data.frame(st, add_max=TRUE)[1:4,] 171s x y band x_max y_max X 171s 1 1 0.5 foo 1 1.5 1 171s 2 2 0.5 foo 2 1.5 2 171s 3 4 0.5 foo 4 1.5 3 171s 4 1 1.5 foo 1 2.5 4 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 1.0 0.5 4.0 3.5 171s > 171s > # rectilinear with start/end given: 171s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 171s > xd = c(1, 2, 4, 8) # one more than dim of the data array 171s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values x/y 171s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 171s y 1 3 1 1 FALSE NULL [y] 171s band 1 2 NA NA FALSE foo, bar 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y band X 171s 1 1.5 1.5 foo 1 171s 2 3.0 1.5 foo 2 171s 3 6.0 1.5 foo 3 171s 4 1.5 2.5 foo 4 171s > as.data.frame(st, add_max=TRUE)[1:4,] 171s x y band x_max y_max X 171s 1 1 1 foo 2 2 1 171s 2 2 1 foo 4 2 2 171s 3 4 1 foo 8 2 3 171s 4 1 2 foo 2 3 4 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 1 1 8 4 171s > 171s > # with sfc: 171s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 171s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values 171s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 171s y 1 3 1 1 FALSE NULL 171s band 1 2 NA NA FALSE foo, bar 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y band X 171s 1 POINT (0 1) 1 foo 1 171s 2 POINT (2 1) 1 foo 2 171s 3 POINT (4 3) 1 foo 3 171s 4 POINT (0 1) 2 foo 4 171s > st_as_sf(st, long = TRUE)[1:4,] 171s Simple feature collection with 4 features and 3 fields 171s Geometry type: POINT 171s Dimension: XY 171s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 171s CRS: NA 171s y band X x 171s 1 1 foo 1 POINT (0 1) 171s 2 1 foo 2 POINT (2 1) 171s 3 1 foo 3 POINT (4 3) 171s 4 2 foo 4 POINT (0 1) 171s > st_bbox(st) 171s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 171s add_max will not work for rotated/shared rasters 171s xmin ymin xmax ymax 171s 0 1 4 3 171s > 171s > # rotated/sheared: 171s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 171s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 5.25 9.5 9.5 13.75 18 171s dimension(s): 171s from to offset delta point values x/y 171s x 1 3 1 1 FALSE NULL [x] 171s y 1 3 1 1 FALSE NULL [y] 171s band 1 2 NA NA FALSE foo, bar 171s sheared raster with parameters: 0.2 -0.2 171s > as.data.frame(st, add_max=FALSE)[1:4,] 171s x y X 171s 1 1.6 1.4 1 171s 2 2.6 1.2 2 171s 3 3.6 1.0 3 171s 4 1.8 2.4 4 171s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 1.0 0.4 4.6 4.0 171s > 171s > # curvilinear: 171s > set.seed(13531) 171s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 171s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 171s > ll = setNames(c(lon, lat), c("lon", "lat")) 171s > d = st_dimensions(lon = 1:3, lat = 1:3) 171s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 171s > (st = st_as_stars(a, curvilinear = ll)) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s X 1 3 5 5 7 9 171s dimension(s): 171s from to refsys point values x/y 171s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 171s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 171s curvilinear grid 171s > as.data.frame(st) 171s lon lat X 171s 1 0.89 0.250 1 171s 2 0.64 0.510 2 171s 3 0.30 0.670 3 171s 4 0.69 0.890 4 171s 5 0.47 0.890 5 171s 6 0.26 0.190 6 171s 7 0.57 0.021 7 171s 8 0.27 0.220 8 171s 9 0.03 0.340 9 171s > st_bbox(st) 171s xmin ymin xmax ymax 171s 0.030 0.021 0.890 0.890 171s > 171s > # time regular: 171s > t = as.Date("2019-01-20") + 0:3 171s > d = st_dimensions(t, sfc) 171s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a 1 3.75 6.5 6.5 9.25 12 171s dimension(s): 171s from to offset delta refsys point values 171s X1 1 4 2019-01-20 1 days Date FALSE NULL 171s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 171s > as.data.frame(st) 171s X1 X2 a 171s 1 2019-01-20 POINT (0 1) 1 171s 2 2019-01-21 POINT (0 1) 2 171s 3 2019-01-22 POINT (0 1) 3 171s 4 2019-01-23 POINT (0 1) 4 171s 5 2019-01-20 POINT (2 1) 5 171s 6 2019-01-21 POINT (2 1) 6 171s 7 2019-01-22 POINT (2 1) 7 171s 8 2019-01-23 POINT (2 1) 8 171s 9 2019-01-20 POINT (4 3) 9 171s 10 2019-01-21 POINT (4 3) 10 171s 11 2019-01-22 POINT (4 3) 11 171s 12 2019-01-23 POINT (4 3) 12 171s > 171s > # time, rectilinear 171s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 171s > d = st_dimensions(t, sfc) 171s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a 1 3.75 6.5 6.5 9.25 12 171s dimension(s): 171s from to refsys point values 171s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 171s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 171s > as.data.frame(st) 171s X1 X2 a 171s 1 2019-01-20 POINT (0 1) 1 171s 2 2019-01-22 POINT (0 1) 2 171s 3 2019-01-23 POINT (0 1) 3 171s 4 2019-01-30 POINT (0 1) 4 171s 5 2019-01-20 POINT (2 1) 5 171s 6 2019-01-22 POINT (2 1) 6 171s 7 2019-01-23 POINT (2 1) 7 171s 8 2019-01-30 POINT (2 1) 8 171s 9 2019-01-20 POINT (4 3) 9 171s 10 2019-01-22 POINT (4 3) 10 171s 11 2019-01-23 POINT (4 3) 11 171s 12 2019-01-30 POINT (4 3) 12 171s > 171s BEGIN TEST mdim.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > Sys.setenv(TZ="") 171s > suppressPackageStartupMessages(library(stars)) 171s > matrix(1:4,2) 171s [,1] [,2] 171s [1,] 1 3 171s [2,] 2 4 171s > m = matrix(1:4,2) 171s > s = st_as_stars(m) 171s > 171s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 171s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 171s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 171s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 171s > s = st_set_dimensions(s, 2, tm) 171s > f = tempfile(fileext = ".nc") 171s > write_mdim(s, f, as_float = FALSE) 171s > s2 = read_mdim(f) 171s Warning messages: 171s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 171s GDAL Error 6: SetIndexingVariable() not implemented 171s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 171s GDAL Error 6: SetIndexingVariable() not implemented 171s > #print(s2) 171s > print(all.equal(s, s2, check.attributes = FALSE)) 171s [1] TRUE 171s > print(all.equal(s, s2)) 171s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 171s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 171s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 171s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 171s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 171s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 171s > 171s > st_crs(sfc) = st_crs(s2) 171s > st_crs(s) = st_crs(s2) 171s > tm = as.Date("2023-02-25") + 0:1 171s > sd = st_set_dimensions(s, 2, tm) 171s > print(sd) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s A1 1 1.75 2.5 2.5 3.25 4 171s dimension(s): 171s from to offset delta refsys point values 171s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 171s X2 1 2 2023-02-25 1 days Date FALSE NULL 171s > sd = st_set_dimensions(sd, 1, sfc) 171s > print(sd) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s A1 1 1.75 2.5 2.5 3.25 4 171s dimension(s): 171s from to offset delta refsys point values 171s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 171s X2 1 2 2023-02-25 1 days Date FALSE NULL 171s > f = tempfile(fileext = ".nc") 171s > write_mdim(sd, f) 171s Warning messages: 171s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 171s GDAL Error 6: SetIndexingVariable() not implemented 171s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 171s GDAL Error 6: SetIndexingVariable() not implemented 171s > sd2 = read_mdim(f) 171s > print(sd2) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s A1 1 1.75 2.5 2.5 3.25 4 171s dimension(s): 171s from to offset delta refsys point values 171s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 171s X2 1 2 2023-02-25 1 days Date NA NULL 171s > print(all.equal(sd, sd2, check.attributes = FALSE)) 171s [1] TRUE 171s > print(all.equal(sd, sd2)) 171s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 171s > # if (.Platform$OS.type == "unix") { 171s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 171s > # } 171s > 171s BEGIN TEST nc.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 171s > suppressPackageStartupMessages(library(sf)) 171s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 171s > m = st_set_geometry(nc, NULL) 171s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 171s > dim(n) = c(county = 100, var = 3, year = 2) 171s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 171s > suppressPackageStartupMessages(library(stars)) 172s > (st = st_as_stars(pop = n)) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 8 538 1657.032 1784 30757 172s dimension(s): 172s from to values 172s county 1 100 Ashe,...,Brunswick 172s var 1 3 BIR , SID , NWBIR 172s year 1 2 1974, 1979 172s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 172s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 8 538 1657.032 1784 30757 172s dimension(s): 172s from to refsys point 172s geometries 1 100 NAD27 FALSE 172s var 1 3 NA NA 172s year 1 2 NA NA 172s values 172s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s var BIR , SID , NWBIR 172s year 1974, 1979 172s > foo 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 8 538 1657.032 1784 30757 172s dimension(s): 172s from to refsys point 172s county 1 100 NAD27 FALSE 172s var 1 3 NA NA 172s year 1 2 NA NA 172s values 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s var BIR , SID , NWBIR 172s year 1974, 1979 172s > st_bbox(foo) 172s xmin ymin xmax ymax 172s -84.32385 33.88199 -75.45698 36.58965 172s > (x = st_as_sf(foo)) 172s Simple feature collection with 100 features and 6 fields 172s Geometry type: MULTIPOLYGON 172s Dimension: XY 172s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 172s Geodetic CRS: NAD27 172s First 10 features: 172s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 172s 1 1091 1 10 1364 0 19 172s 2 487 0 10 542 3 12 172s 3 3188 5 208 3616 6 260 172s 4 508 1 123 830 2 145 172s 5 1421 9 1066 1606 3 1197 172s 6 1452 7 954 1838 5 1237 172s 7 286 0 115 350 2 139 172s 8 420 0 254 594 2 371 172s 9 968 4 748 1190 2 844 172s 10 1612 1 160 2038 5 176 172s county 172s 1 MULTIPOLYGON (((-81.47276 3... 172s 2 MULTIPOLYGON (((-81.23989 3... 172s 3 MULTIPOLYGON (((-80.45634 3... 172s 4 MULTIPOLYGON (((-76.00897 3... 172s 5 MULTIPOLYGON (((-77.21767 3... 172s 6 MULTIPOLYGON (((-76.74506 3... 172s 7 MULTIPOLYGON (((-76.00897 3... 172s 8 MULTIPOLYGON (((-76.56251 3... 172s 9 MULTIPOLYGON (((-78.30876 3... 172s 10 MULTIPOLYGON (((-80.02567 3... 172s > frac = function(x) x[2] / x[1] 172s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 172s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 172s > st_apply(foo, c(1,3), frac) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 172s dimension(s): 172s from to refsys point 172s county 1 100 NAD27 FALSE 172s year 1 2 NA NA 172s values 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s year 1974, 1979 172s > st_apply(foo, c(1,3), frac2) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 172s dimension(s): 172s from to refsys point 172s frac2 1 2 NA NA 172s county 1 100 NAD27 FALSE 172s year 1 2 NA NA 172s values 172s frac2 sidsr, nwbr 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s year 1974, 1979 172s > st_apply(foo, c(1,3), frac2an) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 172s dimension(s): 172s from to refsys point 172s frac2an 1 2 NA NA 172s county 1 100 NAD27 FALSE 172s year 1 2 NA NA 172s values 172s frac2an NULL 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s year 1974, 1979 172s > library(abind) 172s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 172s dimension(s): 172s from to refsys point 172s county 1 100 NAD27 FALSE 172s year 1 2 NA NA 172s frac2 1 2 NA NA 172s values 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s year 1974, 1979 172s frac2 sidsr, nwbr 172s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 172s > all.equal(st_dimensions(x), st_dimensions(y)) 172s [1] TRUE 172s > 172s > split(foo, 2) 172s stars object with 2 dimensions and 3 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s BIR 248 1176.75 2265 3761.770 4450.75 30757 172s SID 0 2.00 5 7.515 9.00 57 172s NWBIR 1 206.00 742 1201.810 1315.75 11631 172s dimension(s): 172s from to refsys point 172s county 1 100 NAD27 FALSE 172s year 1 2 NA NA 172s values 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s year 1974, 1979 172s > split(foo, 3) 172s stars object with 2 dimensions and 2 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s 1974 0 8 501.5 1452.367 1580.50 21588 172s 1979 0 9 614.0 1861.697 2040.25 30757 172s dimension(s): 172s from to refsys point 172s county 1 100 NAD27 FALSE 172s var 1 3 NA NA 172s values 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s var BIR , SID , NWBIR 172s > 172s > st_crs(foo) 172s Coordinate Reference System: 172s User input: NAD27 172s wkt: 172s GEOGCRS["NAD27", 172s DATUM["North American Datum 1927", 172s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 172s LENGTHUNIT["metre",1]]], 172s PRIMEM["Greenwich",0, 172s ANGLEUNIT["degree",0.0174532925199433]], 172s CS[ellipsoidal,2], 172s AXIS["geodetic latitude (Lat)",north, 172s ORDER[1], 172s ANGLEUNIT["degree",0.0174532925199433]], 172s AXIS["geodetic longitude (Lon)",east, 172s ORDER[2], 172s ANGLEUNIT["degree",0.0174532925199433]], 172s USAGE[ 172s SCOPE["Geodesy."], 172s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 172s BBOX[7.15,167.65,83.17,-47.74]], 172s ID["EPSG",4267]] 172s > plot(foo) 172s > 172s > # subset vector cube: 172s > foo[nc[1]] 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s pop 0 8 538 1657.032 1784 30757 172s dimension(s): 172s from to refsys point 172s county 1 100 NAD27 FALSE 172s var 1 3 NA NA 172s year 1 2 NA NA 172s values 172s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 172s var BIR , SID , NWBIR 172s year 1974, 1979 172s > 172s BEGIN TEST plot.R 172s 172s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 172s Copyright (C) 2025 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 172s > suppressPackageStartupMessages(library(stars)) 172s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 172s + data(air) # this loads several datasets in .GlobalEnv 172s + dim(air) 172s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 172s + aq = st_as_stars(list(PM10 = air), dimensions = d) 172s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 172s + st_geometry(aq) 172s + } 173s Geometry set for 70 features 173s Geometry type: POINT 173s Dimension: XY 173s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 173s POINT (9.585911 53.67057) 173s POINT (9.68503 53.52418) 173s POINT (9.791584 54.07312) 173s POINT (13.64701 52.44775) 173s POINT (13.29635 52.65315) 173s Warning message: 173s In plot.stars(output) : 173s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 173s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 173s First 5 geometries: 173s > 173s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 173s > if (csv != "") { 173s + rgb = read.csv(csv, header = TRUE, sep = ";") 173s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 173s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 173s + } 173s > 173s > # https://github.com/r-spatial/stars/issues/233 : 173s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 173s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 173s > plot(output) 173s > 173s BEGIN TEST predict.R 173s 173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > suppressPackageStartupMessages(library(stars)) 173s > # predict: 173s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s > (x = read_stars(tif)) 173s stars object with 3 dimensions and 1 attribute 173s attribute(s): 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 1 54 69 68.91242 86 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s > st_crs(x) = st_crs(x) # cleans trailing space 173s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 173s > x = predict(x, model) 174s > 174s > (y = read_stars(tif, proxy = TRUE)) 174s stars_proxy object with 1 attribute in 1 file(s): 174s $L7_ETMs.tif 174s [1] "[...]/L7_ETMs.tif" 174s 174s dimension(s): 174s from to offset delta refsys point x/y 174s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 174s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 174s band 1 6 NA NA NA NA 174s > (yp = predict(y, model)) 174s stars_proxy object with 1 attribute in 1 file(s): 174s $L7_ETMs.tif 174s [1] "[...]/L7_ETMs.tif" 174s 174s dimension(s): 174s from to offset delta refsys point x/y 174s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 174s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 174s band 1 6 NA NA NA NA 174s call_list: 174s [[1]] 174s predict(object = object, model = model) 174s attr(,".Environment") 174s 174s 174s This object has pending lazy operations: dimensions as printed may not reflect this. 174s > all.equal(x, st_as_stars(yp)) 174s [1] TRUE 174s > 174s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 174s > (y_spl = split(yy, 3)) 174s stars_proxy object with 1 attribute in 1 file(s): 174s $L7_ETMs.tif 174s [1] "[...]/L7_ETMs.tif" 174s 174s dimension(s): 174s from to offset delta refsys point values 174s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 174s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 174s band 1 6 NA NA NA NA band1,...,band6 174s x/y 174s x [x] 174s y [y] 174s band 174s call_list: 174s [[1]] 174s split(x = x, 3) 174s attr(,".Environment") 174s 174s 174s This object has pending lazy operations: dimensions as printed may not reflect this. 174s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 174s x y band1 band2 band3 band4 band5 band6 174s 1 288790.5 9120747 69 56 46 79 86 46 174s 2 288819.0 9120747 69 57 49 75 88 49 174s 3 288847.5 9120747 63 52 45 66 75 41 174s > 174s BEGIN TEST proxy.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 175s > Sys.setenv(TZ="UTC") 175s > suppressPackageStartupMessages(library(sf)) 175s > suppressPackageStartupMessages(library(stars)) 175s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 175s > (r = read_stars(tif, proxy = TRUE)) 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > if (interactive()) { 175s + plot(r) 175s + } 175s > dim(r) 175s x y band 175s 349 352 6 175s > r[,,,2:3] 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 2 3 NA NA NA NA 175s > r+r 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s call_list: 175s [[1]] 175s e1 + e2 175s attr(,".Environment") 175s 175s 175s This object has pending lazy operations: dimensions as printed may not reflect this. 175s > st_as_stars(sin(r), downsample = 2) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > aperm(r, c(3,2,1)) 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s call_list: 175s [[1]] 175s aperm(a = a, perm = perm) 175s attr(,".Environment") 175s 175s 175s This object has pending lazy operations: dimensions as printed may not reflect this. 175s > if (interactive()) { 175s + plot(r) 175s + } 175s > (xx = c(r,r)) 175s stars_proxy object with 2 attributes in 2 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > st_redimension(xx) 175s stars_proxy object with 1 attribute in 2 file(s): 175s $L7_ETMs.tif.L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 175s band 1 6 NA NA NA NA 175s new_dim 1 2 NA NA NA NA 175s values x/y 175s x NULL [x] 175s y NULL [y] 175s band NULL 175s new_dim L7_ETMs.tif, L7_ETMs.tif 175s > st_as_stars(r) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 1 54 69 68.91242 86 255 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > (y = st_apply(r, 1:2, max)) 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s call_list: 175s [[1]] 175s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 175s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 175s attr(,".Environment") 175s 175s 175s This object has pending lazy operations: dimensions as printed may not reflect this. 175s > (yy = st_as_stars(y, downsample = 1)) 175s stars object with 2 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s max 55 85 96 99.38568 113 255 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s > (y = adrop(st_apply(r, c("x", "y"), max))) 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s call_list: 175s [[1]] 175s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 175s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 175s attr(,".Environment") 175s 175s 175s [[2]] 175s adrop(x = x, drop = drop) 175s attr(,".Environment") 175s 175s 175s This object has pending lazy operations: dimensions as printed may not reflect this. 175s > (yy = st_as_stars(y, downsample = 1)) 175s stars object with 2 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s max 55 85 96 99.38568 113 255 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s > plot(yy) 175s > (y = adrop(st_apply(r, c("x", "band"), max))) 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s call_list: 175s [[1]] 175s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 175s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 175s attr(,".Environment") 175s 175s 175s [[2]] 175s adrop(x = x, drop = drop) 175s attr(,".Environment") 175s 175s 175s This object has pending lazy operations: dimensions as printed may not reflect this. 175s > (yy = st_as_stars(y, downsample = 1)) 175s stars object with 2 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s max 77 111 133 137.8505 157 255 175s dimension(s): 175s from to offset delta refsys point 175s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 175s band 1 6 NA NA NA NA 175s > rm(yy) 175s > 175s > (xx = c(r,r)) 175s Warning message: 175s In FUN(X[[i]], ...) : 175s st_apply on x/y dimensions applied to downsampled image(s) 175s stars_proxy object with 2 attributes in 2 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > names(xx) = c("a", "b") 175s > xx["a"] 175s stars_proxy object with 1 attribute in 1 file(s): 175s $a 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 175s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 175s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 175s + crs = st_crs(r)) 175s > r = r[buf] # crops 175s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 175s > 175s > # c: 175s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 175s > if (FALSE && f != "") { 175s + files = c("avhrr-only-v2.19810901.nc", 175s + "avhrr-only-v2.19810902.nc", 175s + "avhrr-only-v2.19810903.nc", 175s + "avhrr-only-v2.19810904.nc", 175s + "avhrr-only-v2.19810905.nc", 175s + "avhrr-only-v2.19810906.nc", 175s + "avhrr-only-v2.19810907.nc", 175s + "avhrr-only-v2.19810908.nc", 175s + "avhrr-only-v2.19810909.nc") 175s + l = list() 175s + for (f in files) { 175s + from = system.file(paste0("netcdf/", f), package = "starsdata") 175s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 175s + } 175s + ret = do.call(c, l) 175s + print(ret) 175s + all = system.file(paste0("netcdf/", files), package = "starsdata") 175s + ret = read_stars(all, sub = c("sst", "anom")) 175s + print(ret) 175s + print(st_redimension(ret)) # collapse the two attributes into new dimension 175s + 175s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 175s + #print(ret) 175s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 175s + #print(ret) 175s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 175s + print(ret) 175s + } 175s > 175s > # demonstrate that environments work: 175s > x = read_stars(tif, proxy = TRUE) 175s > f = function(x) { 175s + g = function(xx) { 175s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 175s + st_apply(xx, 1:2, ndvi) 175s + } 175s + g(x) 175s + } 175s > (x = f(x)) 175s stars_proxy object with 1 attribute in 1 file(s): 175s $L7_ETMs.tif 175s [1] "[...]/L7_ETMs.tif" 175s 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s call_list: 175s [[1]] 175s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 175s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 175s attr(,".Environment") 175s 175s 175s This object has pending lazy operations: dimensions as printed may not reflect this. 175s > st_as_stars(x) 175s stars object with 2 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s > 175s BEGIN TEST raster.R 176s 176s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 176s > options(rgdal_show_exportToProj4_warnings = "none") 176s > suppressPackageStartupMessages(library(stars)) 176s > 176s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 176s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 176s + 176s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 176s + (x = read_stars(tif)) 176s + (r = as(x, "Raster")) 176s + (y = st_as_stars(r)) 176s + 176s + # single band: 176s + x = adrop(x[,,,1]) 176s + r = as(x, "Raster") 176s + (y = st_as_stars(r)) 176s + 176s + # proxy: 176s + (x = read_stars(tif, proxy = TRUE)) 176s + (r = as(x, "Raster")) 176s + (y = st_as_stars(r)) 176s + (y2 = st_as_stars(r, proxy = TRUE)) 176s + } 179s stars_proxy object with 1 attribute in 1 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > 179s > if (require(terra, quietly = TRUE)) { 179s + ## terra ------------- 179s + stopifnot(require(terra)) 179s + (x = read_stars(tif)) 179s + (r = as(x, "SpatRaster")) 179s + (y = st_as_stars(r)) 179s + 179s + # single band: 179s + x = adrop(x[,,,1]) 179s + r = as(x, "SpatRaster") 179s + (y = st_as_stars(r)) 179s + 179s + # proxy: 179s + (x = read_stars(tif, proxy = TRUE)) 179s + (r = as(x, "SpatRaster")) 179s + (y = st_as_stars(r)) 179s + (y2 = st_as_stars(r, proxy = TRUE)) 179s + 179s + f = system.file("tif/lc.tif", package = "stars") 179s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 179s + levels(lc[[1]]) 179s + r = rast(lc) 179s + e = attr(lc[[1]], "exclude") 179s + 179s + if (packageVersion("terra") >= "1.5.48") { 179s + 179s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 179s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 179s + 179s + r<- rast(nrow=10, ncol=10) 179s + set.seed(5) 179s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 179s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 179s + 179s + r2<- rast(nrow=10, ncol=10) 179s + set.seed(6) 179s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 179s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 179s + 179s + r3<- c(r,r2) 179s + names(r3)<- c("lyr.1", "lyr.2") 179s + 179s + r3_stars<- st_as_stars(r3) 179s + 179s + st_redimension(r3_stars) |> print() 179s + rast(r3_stars) |> levels() |> print() 179s + 179s + m = matrix(1:121, 11, 11) 179s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 179s + s = st_as_stars(bb, values = m) 179s + r = rast(s) 179s + aggregate(r, 2) |> st_as_stars() -> r.s 179s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 179s + } 179s + } 179s [1] TRUE 179s [1] TRUE 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s lyr.1.lyr.2 179s c1:34 179s c2:32 179s c3:34 179s x1:28 179s x2:37 179s x3:35 179s dimension(s): 179s from to offset delta refsys values x/y 179s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 179s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 179s new_dim 1 2 NA NA NA lyr.1, lyr.2 179s [[1]] 179s IDs categories 179s 1 1 c1 179s 2 2 c2 179s 3 3 c3 179s 179s [[2]] 179s IDs categories 179s 1 0 x1 179s 2 2 x2 179s 3 3 x3 179s 179s > 179s > 179s BEGIN TEST rasterize.R 179s 179s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > suppressPackageStartupMessages(library(stars)) 180s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 180s > (x = st_rasterize(nc)) # default grid: 180s stars object with 2 dimensions and 12 attributes 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 180s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 180s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 180s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 180s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 180s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 180s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 180s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 180s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 180s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 180s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 180s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 180s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 180s dimension(s): 180s from to offset delta refsys point x/y 180s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 180s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 180s > plot(x, axes = TRUE) 180s > # a bit more customized grid: 180s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 180s stars object with 2 dimensions and 12 attributes 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 180s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 180s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 180s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 180s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 180s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 180s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 180s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 180s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 180s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 180s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 180s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 180s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 180s dimension(s): 180s from to offset delta refsys point x/y 180s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 180s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 180s > plot(x, axes = TRUE) 180s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 180s Simple feature collection with 2 features and 1 field 180s Geometry type: LINESTRING 180s Dimension: XY 180s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 180s CRS: NA 180s a 180s 1 1 180s 2 2 180s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 180s 1 LINESTRING (0.1 0, 1.1 1) 180s 2 LINESTRING (0 0.05, 1 0.05) 180s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 180s stars object with 2 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 180s values NA NA NA NaN NA NA 100 180s dimension(s): 180s from to offset delta x/y 180s x 1 10 0 0.1 [x] 180s y 1 10 1 -0.1 [y] 180s > # the following two plots confirm that (only) the 180s > # upper-left corner is part of the grid cell (when dy is negative), leading 180s > # to a seemingly half-gridcell-shift problem: 180s > ## sf_extSoftVersion()["GDAL"] 180s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 180s > plot(ls, add = TRUE, col = "red") 180s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 180s > plot(ls, add = TRUE, col = "red") 180s > # add lines to existing 0 values, summing values in case of multiple lines: 180s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 180s stars object with 2 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s values 0 0 0 0 0 0 180s dimension(s): 180s from to offset delta x/y 180s x 1 10 0 0.1 [x] 180s y 1 10 1 -0.1 [y] 180s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 180s > plot(r, axes = TRUE, reset = FALSE) 180s > plot(ls, add = TRUE, col = "red") 180s > 180s BEGIN TEST rectilinear.R 180s 180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 180s Copyright (C) 2025 The R Foundation for Statistical Computing 180s Platform: x86_64-pc-linux-gnu 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > suppressPackageStartupMessages(library(stars)) 181s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 181s > x = read_stars(tif) 181s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 181s stars object with 3 dimensions and 1 attribute 181s attribute(s): 181s Min. 1st Qu. Median Mean 3rd Qu. Max. 181s L7_ETMs.tif 1 54 69 68.9915 86 255 181s dimension(s): 181s from to refsys point 181s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 181s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 181s band 1 6 NA NA 181s values x/y 181s x [288790.5,288819),...,[298708.5,298737) [x] 181s y [9120747,9120718),...,[9110743,9110715) [y] 181s band NULL 181s > image(xx) # chooses useRaster itself 181s > # see also tidy.R for a ggplot example, leaving out the row. 181s > 181s > m = matrix(1:16, 4, 4) 181s > x = 1:4 181s > y = 2:5 181s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 181s stars object with 2 dimensions and 1 attribute 181s attribute(s): 181s Min. 1st Qu. Median Mean 3rd Qu. Max. 181s m 1 4.75 8.5 8.5 12.25 16 181s dimension(s): 181s from to offset delta point x/y 181s x 1 4 1 1 FALSE [x] 181s y 1 4 2 1 FALSE [y] 181s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 181s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 181s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 181s > 181s > # $<-.stars: 181s > st$foo = st$m * 2 181s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 181s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 181s > st 181s stars object with 2 dimensions and 2 attributes 181s attribute(s): 181s Min. 1st Qu. Median Mean 3rd Qu. Max. 181s m 1 4.75 8.5 8.5 12.25 16 181s foo 2 9.50 17.0 17.0 24.50 32 181s dimension(s): 181s from to point values x/y 181s x 1 4 FALSE [1,2),...,[4,6) [x] 181s y 1 4 FALSE [2,3),...,[5,8) [y] 181s > 181s > # st_as_sf: 181s > 181s > if (utils::packageVersion("sf") > "0.7.2") { 181s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 181s + } 181s > 181s > image(st, text_values = TRUE, axes = TRUE) 181s > 181s BEGIN TEST redimension.R 181s 181s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 181s Copyright (C) 2025 The R Foundation for Statistical Computing 181s Platform: x86_64-pc-linux-gnu 181s 181s R is free software and comes with ABSOLUTELY NO WARRANTY. 181s You are welcome to redistribute it under certain conditions. 181s Type 'license()' or 'licence()' for distribution details. 181s 181s R is a collaborative project with many contributors. 181s Type 'contributors()' for more information and 181s 'citation()' on how to cite R or R packages in publications. 181s 181s Type 'demo()' for some demos, 'help()' for on-line help, or 181s 'help.start()' for an HTML browser interface to help. 181s Type 'q()' to quit R. 181s 181s > suppressPackageStartupMessages(library(stars)) 181s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 181s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 181s > (xx = st_redimension(r, along = list(foo = 1:4))) 181s stars_proxy object with 1 attribute in 4 file(s): 181s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" 181s 181s dimension(s): 181s from to offset delta refsys point x/y 181s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 181s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 181s band 1 6 NA NA NA NA 181s foo 1 4 1 1 NA NA 181s > (rr = c(xx, xx)) 181s stars_proxy object with 2 attributes in 8 file(s): 181s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" 181s 181s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" 181s 181s dimension(s): 181s from to offset delta refsys point x/y 181s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 181s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 181s band 1 6 NA NA NA NA 181s foo 1 4 1 1 NA NA 181s > # st_as_stars(rr) 181s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 181s stars_proxy object with 1 attribute in 8 file(s): 181s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s 181s dimension(s): 181s from to offset delta refsys point x/y 181s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 181s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 181s band 1 6 NA NA NA NA 181s foo 1 4 1 1 NA NA 181s bar 1 2 2001-01-01 365 days Date NA 181s > (rr = c(a = xx, b = xx)) 181s stars_proxy object with 2 attributes in 8 file(s): 181s $a 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" 181s 181s $b 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" 181s 181s dimension(s): 181s from to offset delta refsys point x/y 181s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 181s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 181s band 1 6 NA NA NA NA 181s foo 1 4 1 1 NA NA 181s > # st_as_stars(rr) 181s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 181s stars_proxy object with 1 attribute in 8 file(s): 181s $a.b 181s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 181s 181s dimension(s): 181s from to offset delta refsys point x/y 181s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 181s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 181s band 1 6 NA NA NA NA 181s foo 1 4 1 1 NA NA 181s bar 1 2 2001-01-01 365 days Date NA 181s > 181s BEGIN TEST sf.R 182s 182s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 182s Copyright (C) 2025 The R Foundation for Statistical Computing 182s Platform: x86_64-pc-linux-gnu 182s 182s R is free software and comes with ABSOLUTELY NO WARRANTY. 182s You are welcome to redistribute it under certain conditions. 182s Type 'license()' or 'licence()' for distribution details. 182s 182s R is a collaborative project with many contributors. 182s Type 'contributors()' for more information and 182s 'citation()' on how to cite R or R packages in publications. 182s 182s Type 'demo()' for some demos, 'help()' for on-line help, or 182s 'help.start()' for an HTML browser interface to help. 182s Type 'q()' to quit R. 182s 182s > suppressPackageStartupMessages(library(stars)) 182s > library(sf) 182s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 182s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 182s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 182s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 182s > (x = read_stars(tif)[,1:20,1:20]) 182s stars object with 3 dimensions and 1 attribute 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s L7_ETMs.tif 17 44 58 58.19667 70 130 182s dimension(s): 182s from to offset delta refsys point x/y 182s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 182s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 182s band 1 6 NA NA NA NA 182s > # names(x) = "L7_ETM" 182s > 182s > # library(abind) 182s > # x = adrop(x) 182s > image(x) 182s > (sfc = st_as_sfc(x, as_points = FALSE)) 182s Geometry set for 400 features 182s Geometry type: POLYGON 182s Dimension: XY 182s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 182s Projected CRS: SIRGAS 2000 / UTM zone 25S 182s First 5 geometries: 182s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 182s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 182s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 182s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 182s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 182s > plot(sfc, add =TRUE) 182s > (sfc = st_as_sfc(x, as_points = TRUE)) 182s Geometry set for 400 features 182s Geometry type: POINT 182s Dimension: XY 182s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 182s Projected CRS: SIRGAS 2000 / UTM zone 25S 182s First 5 geometries: 182s POINT (288790.5 9120747) 182s POINT (288819 9120747) 182s POINT (288847.5 9120747) 182s POINT (288876 9120747) 182s POINT (288904.5 9120747) 182s > plot(sfc, add = TRUE) 182s > 182s > sf = st_as_sf(x, as_points = FALSE) 182s > plot(sf, border = NA) 182s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 182s Warning message: 182s In CPL_polygonize(file, mask_name, "GTiff", "Memory", "foo", options, : 182s GDAL Message 1: DeprecationWarning: 'Memory' driver is deprecated since GDAL 3.11. Use 'MEM' onwards. Further messages of this type will be suppressed. 182s > plot(sf, border = NA) 182s > 182s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 182s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 182s > identical(sfc1, sfc2) 182s [1] TRUE 182s > 182s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 182s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 182s > identical(sfc1, sfc2) 182s [1] TRUE 182s > 182s > # sf -> stars -> sf 182s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 182s > m = matrix(1:9,3) 182s > colnames(m) = c("a", "b", "c") 182s > foo = st_sf(m, geom = x) 182s > x = st_as_stars(foo) 182s > c(x) 182s stars object with 1 dimensions and 3 attributes 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s a 1 1.5 2 2 2.5 3 182s b 4 4.5 5 5 5.5 6 182s c 7 7.5 8 8 8.5 9 182s dimension(s): 182s from to point values 182s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 182s > st_redimension(x) 182s stars object with 2 dimensions and 1 attribute 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s a.b.c 1 3 5 5 7 9 182s dimension(s): 182s from to point values 182s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 182s new_dim 1 3 NA a, b, c 182s > c(x, x) 182s stars object with 1 dimensions and 6 attributes 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s a 1 1.5 2 2 2.5 3 182s b 4 4.5 5 5 5.5 6 182s c 7 7.5 8 8 8.5 9 182s a.1 1 1.5 2 2 2.5 3 182s b.1 4 4.5 5 5 5.5 6 182s c.1 7 7.5 8 8 8.5 9 182s dimension(s): 182s from to point values 182s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 182s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 182s stars object with 2 dimensions and 1 attribute 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s a.b.c 1 3 5 5 7 9 182s dimension(s): 182s from to offset delta refsys point values 182s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 182s time 1 3 2017-11-27 1 days Date NA NULL 182s > st_as_sf(y) 182s Simple feature collection with 3 features and 3 fields 182s Geometry type: POINT 182s Dimension: XY 182s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 182s CRS: NA 182s 2017-11-27 2017-11-28 2017-11-29 geom 182s 1 1 4 7 POINT (0 1) 182s 2 2 5 8 POINT (1 2) 182s 3 3 6 9 POINT (2 3) 182s > st_as_sf(st_as_stars(foo)) 182s Simple feature collection with 3 features and 3 fields 182s Geometry type: POINT 182s Dimension: XY 182s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 182s CRS: NA 182s a b c geom 182s 1 1 4 7 POINT (0 1) 182s 2 2 5 8 POINT (1 2) 182s 3 3 6 9 POINT (2 3) 182s > 182s > c(x,x,along=1) # NEEDS FIXING! 182s stars object with 1 dimensions and 3 attributes 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s a 1 1.25 2 2 2.75 3 182s b 4 4.25 5 5 5.75 6 182s c 7 7.25 8 8 8.75 9 182s dimension(s): 182s from to point values 182s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 182s > # st_as_stars.sfc 182s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 182s stars object with 2 dimensions and 1 attribute 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. 182s values 0 0 0 0.06 0 1 182s dimension(s): 182s from to offset delta x/y 182s x 1 10 0 0.2 [x] 182s y 1 10 3 -0.2 [y] 182s > 182s BEGIN TEST sp.R 182s 182s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 182s Copyright (C) 2025 The R Foundation for Statistical Computing 182s Platform: x86_64-pc-linux-gnu 182s 182s R is free software and comes with ABSOLUTELY NO WARRANTY. 182s You are welcome to redistribute it under certain conditions. 182s Type 'license()' or 'licence()' for distribution details. 182s 182s R is a collaborative project with many contributors. 182s Type 'contributors()' for more information and 182s 'citation()' on how to cite R or R packages in publications. 182s 182s Type 'demo()' for some demos, 'help()' for on-line help, or 182s 'help.start()' for an HTML browser interface to help. 182s Type 'q()' to quit R. 182s 182s > options(rgdal_show_exportToProj4_warnings = "none") 182s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 182s + demo(meuse) 182s + # remove +init=xxx 182s + meuse@proj4string = CRS( 182s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 182s + ) 182s + meuse.grid@proj4string = CRS( 182s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 182s + ) 182s + 182s + suppressPackageStartupMessages(library(stars)) 182s + (m = st_as_stars(meuse)) 182s + (gr = st_as_stars(meuse.grid)) 182s + 182s + m2 = as(m, "Spatial") 182s + summary(m2) 182s + gr2 = as(gr, "Spatial") 182s + summary(gr2) 182s + 182s + all.equal(meuse, m2, check.attributes = FALSE) 182s + fullgrid(meuse.grid) = TRUE 182s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 182s + 182s + #all.equal(meuse, m2) 182s + #all.equal(meuse.grid, gr2) 182s + } 182s 182s 182s demo(meuse) 182s ---- ~~~~~ 182s 182s > require(sp) 182s 182s > crs = CRS("EPSG:28992") 183s 183s > data("meuse") 183s 183s > coordinates(meuse) <- ~x+y 183s 183s > proj4string(meuse) <- crs 183s 183s > data("meuse.grid") 183s 183s > coordinates(meuse.grid) <- ~x+y 183s 183s > gridded(meuse.grid) <- TRUE 183s 183s > proj4string(meuse.grid) <- crs 183s 183s > data("meuse.riv") 183s 183s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 183s 183s > proj4string(meuse.riv) <- crs 183s 183s > data("meuse.area") 183s 183s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 183s 183s > proj4string(meuse.area) <- crs 183s [1] TRUE 183s > 183s BEGIN TEST spacetime.R 183s 183s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 183s Copyright (C) 2025 The R Foundation for Statistical Computing 183s Platform: x86_64-pc-linux-gnu 183s 183s R is free software and comes with ABSOLUTELY NO WARRANTY. 183s You are welcome to redistribute it under certain conditions. 183s Type 'license()' or 'licence()' for distribution details. 183s 183s R is a collaborative project with many contributors. 183s Type 'contributors()' for more information and 183s 'citation()' on how to cite R or R packages in publications. 183s 183s Type 'demo()' for some demos, 'help()' for on-line help, or 183s 'help.start()' for an HTML browser interface to help. 183s Type 'q()' to quit R. 183s 183s > suppressPackageStartupMessages(library(stars)) 183s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 183s + set.seed(1331) 183s + Sys.setenv(TZ="UTC") 183s + example(STFDF) 183s + 183s + x = st_as_stars(stfdf) 183s + xx = as(x, "STFDF") 183s + 183s + # as.xts.stars: 183s + library(xts) 183s + xts = as.xts(x) 183s + st_as_stars(xts) 183s + st_as_stars(xts, dimensions = st_dimensions(x)) 183s + 183s + library(sp) 183s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 183s + gridded(pts) = TRUE 183s + 183s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 183s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 183s + x = st_as_stars(stfdf) 183s + xx = as(x, "STFDF") 183s + 183s + x = st_as_stars(as(stfdf, "STSDF")) 183s + } 184s 184s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 184s 184s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 184s 184s STFDF> library(sp) 184s 184s STFDF> sp = SpatialPoints(sp) 184s 184s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 184s 184s STFDF> m = c(10,20,30) # means for each of the 3 point locations 184s 184s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 184s 184s STFDF> IDs = paste("ID",1:length(mydata)) 184s 184s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 184s 184s STFDF> stfdf = STFDF(sp, time, mydata) 184s 184s STFDF> stfdf 184s An object of class "STFDF" 184s Slot "data": 184s values ID 184s 1 9.38 ID 1 184s 2 21.10 ID 2 184s 3 29.80 ID 3 184s 4 11.50 ID 4 184s 5 19.80 ID 5 184s 6 31.20 ID 6 184s 7 10.40 ID 7 184s 8 20.50 ID 8 184s 9 29.80 ID 9 184s 10 10.30 ID 10 184s 11 21.40 ID 11 184s 12 29.40 ID 12 184s 184s Slot "sp": 184s SpatialPoints: 184s x y 184s point1 0 0 184s point2 0 1 184s point3 1 1 184s Coordinate Reference System (CRS) arguments: NA 184s 184s Slot "time": 184s timeIndex 184s 2010-08-05 10:00:00 1 184s 2010-08-05 11:00:00 2 184s 2010-08-05 12:00:00 3 184s 2010-08-05 13:00:00 4 184s 184s Slot "endTime": 184s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 184s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 184s 184s 184s STFDF> stfdf[1:2,] 184s An object of class "STFDF" 184s Slot "data": 184s values ID 184s 1 9.38 ID 1 184s 2 21.10 ID 2 184s 3 11.50 ID 4 184s 4 19.80 ID 5 184s 5 10.40 ID 7 184s 6 20.50 ID 8 184s 7 10.30 ID 10 184s 8 21.40 ID 11 184s 184s Slot "sp": 184s SpatialPoints: 184s x y 184s point1 0 0 184s point2 0 1 184s Coordinate Reference System (CRS) arguments: NA 184s 184s Slot "time": 184s timeIndex 184s 2010-08-05 10:00:00 1 184s 2010-08-05 11:00:00 2 184s 2010-08-05 12:00:00 3 184s 2010-08-05 13:00:00 4 184s 184s Slot "endTime": 184s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 184s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 184s 184s 184s STFDF> stfdf[,1:2] 184s An object of class "STFDF" 184s Slot "data": 184s values ID 184s 1 9.38 ID 1 184s 2 21.10 ID 2 184s 3 29.80 ID 3 184s 4 11.50 ID 4 184s 5 19.80 ID 5 184s 6 31.20 ID 6 184s 184s Slot "sp": 184s SpatialPoints: 184s x y 184s point1 0 0 184s point2 0 1 184s point3 1 1 184s Coordinate Reference System (CRS) arguments: NA 184s 184s Slot "time": 184s timeIndex 184s 2010-08-05 10:00:00 1 184s 2010-08-05 11:00:00 2 184s 184s Slot "endTime": 184s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 184s 184s 184s STFDF> stfdf[,,2] 184s An object of class "STFDF" 184s Slot "data": 184s ID 184s 1 ID 1 184s 2 ID 2 184s 3 ID 3 184s 4 ID 4 184s 5 ID 5 184s 6 ID 6 184s 7 ID 7 184s 8 ID 8 184s 9 ID 9 184s 10 ID 10 184s 11 ID 11 184s 12 ID 12 184s 184s Slot "sp": 184s SpatialPoints: 184s x y 184s point1 0 0 184s point2 0 1 184s point3 1 1 184s Coordinate Reference System (CRS) arguments: NA 184s 184s Slot "time": 184s timeIndex 184s 2010-08-05 10:00:00 1 184s 2010-08-05 11:00:00 2 184s 2010-08-05 12:00:00 3 184s 2010-08-05 13:00:00 4 184s 184s Slot "endTime": 184s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 184s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 184s 184s 184s STFDF> stfdf[,,"values"] 184s An object of class "STFDF" 184s Slot "data": 184s values 184s 1 9.38 184s 2 21.10 184s 3 29.80 184s 4 11.50 184s 5 19.80 184s 6 31.20 184s 7 10.40 184s 8 20.50 184s 9 29.80 184s 10 10.30 184s 11 21.40 184s 12 29.40 184s 184s Slot "sp": 184s SpatialPoints: 184s x y 184s point1 0 0 184s point2 0 1 184s point3 1 1 184s Coordinate Reference System (CRS) arguments: NA 184s 184s Slot "time": 184s timeIndex 184s 2010-08-05 10:00:00 1 184s 2010-08-05 11:00:00 2 184s 2010-08-05 12:00:00 3 184s 2010-08-05 13:00:00 4 184s 184s Slot "endTime": 184s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 184s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 184s 184s 184s STFDF> stfdf[1,] 184s values ID timeIndex 184s 2010-08-05 10:00:00 9.38 ID 1 1 184s 2010-08-05 11:00:00 11.50 ID 4 2 184s 2010-08-05 12:00:00 10.40 ID 7 3 184s 2010-08-05 13:00:00 10.30 ID 10 4 184s 184s STFDF> stfdf[,2] 184s coordinates values ID 184s 1 (0, 0) 11.5 ID 4 184s 2 (0, 1) 19.8 ID 5 184s 3 (1, 1) 31.2 ID 6 184s 184s STFDF> as(stfdf[,,1], "xts") 184s point1 point2 point3 184s 2010-08-05 10:00:00 9.38 21.1 29.8 184s 2010-08-05 11:00:00 11.50 19.8 31.2 184s 2010-08-05 12:00:00 10.40 20.5 29.8 184s 2010-08-05 13:00:00 10.30 21.4 29.4 184s 184s STFDF> as(stfdf[,,2], "xts") 184s point1 point2 point3 184s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 184s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 184s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 184s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 184s 184s STFDF> # examples for [[, [[<-, $ and $<- 184s STFDF> stfdf[[1]] 184s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 184s 184s STFDF> stfdf[["values"]] 184s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 184s 184s STFDF> stfdf[["newVal"]] <- rnorm(12) 184s 184s STFDF> stfdf$ID 184s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 184s [10] "ID 10" "ID 11" "ID 12" 184s 184s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 184s 184s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 184s 184s STFDF> stfdf 184s An object of class "STFDF" 184s Slot "data": 184s values ID newVal NewID 184s 1 9.38 OldIDs1 -0.3125824 NewIDs12 184s 2 21.10 OldIDs2 -1.0536246 NewIDs11 184s 3 29.80 OldIDs3 -0.7188880 NewIDs10 184s 4 11.50 OldIDs4 -1.0525404 NewIDs9 184s 5 19.80 OldIDs5 -0.8441413 NewIDs8 184s 6 31.20 OldIDs6 1.1420848 NewIDs7 184s 7 10.40 OldIDs7 1.9479070 NewIDs6 184s 8 20.50 OldIDs8 -0.4512836 NewIDs5 184s 9 29.80 OldIDs9 0.6695716 NewIDs4 184s 10 10.30 OldIDs10 0.1269003 NewIDs3 184s 11 21.40 OldIDs11 -0.7273297 NewIDs2 184s 12 29.40 OldIDs12 -0.8151803 NewIDs1 184s 184s Slot "sp": 184s SpatialPoints: 184s x y 184s point1 0 0 184s point2 0 1 184s point3 1 1 184s Coordinate Reference System (CRS) arguments: NA 184s 184s Slot "time": 184s timeIndex 184s 2010-08-05 10:00:00 1 184s 2010-08-05 11:00:00 2 184s 2010-08-05 12:00:00 3 184s 2010-08-05 13:00:00 4 184s 184s Slot "endTime": 184s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 184s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 184s 184s 184s STFDF> x = stfdf[stfdf[1:2,],] 184s 184s STFDF> all.equal(x, stfdf[1:2,]) 184s [1] TRUE 184s 184s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 184s [1] TRUE 184s Loading required package: zoo 184s 184s Attaching package: 'zoo' 184s 184s The following objects are masked from 'package:base': 184s 184s as.Date, as.Date.numeric 184s 184s only the first attribute will used; maybe use merge() first? 184s > 184s BEGIN TEST spatstat.R 184s 184s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 184s Copyright (C) 2025 The R Foundation for Statistical Computing 184s Platform: x86_64-pc-linux-gnu 184s 184s R is free software and comes with ABSOLUTELY NO WARRANTY. 184s You are welcome to redistribute it under certain conditions. 184s Type 'license()' or 'licence()' for distribution details. 184s 184s R is a collaborative project with many contributors. 184s Type 'contributors()' for more information and 184s 'citation()' on how to cite R or R packages in publications. 184s 184s Type 'demo()' for some demos, 'help()' for on-line help, or 184s 'help.start()' for an HTML browser interface to help. 184s Type 'q()' to quit R. 184s 184s > suppressPackageStartupMessages(library(sf)) 184s > 184s > library(stars) 184s Loading required package: abind 184s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 184s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 184s + s = adrop(read_stars(tif)[,,,1]) > 70 184s + plot(s) 184s + m = as.owin(s) 184s + plot(m) 184s + print(table(m$m)) 184s + } 185s 185s FALSE TRUE 185s 39494 83354 185s > 185s BEGIN TEST stars.R 185s 185s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 185s Copyright (C) 2025 The R Foundation for Statistical Computing 185s Platform: x86_64-pc-linux-gnu 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 185s > Sys.setenv(TZ="UTC") 185s > suppressPackageStartupMessages(library(stars)) 185s > set.seed(13521) # runif 185s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 185s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 185s stars object with 3 dimensions and 2 attributes 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s L7_ETMs.tif 1 54 69 68.91242 86 255 185s L7_ETMs.tif.1 1 54 69 68.91242 86 255 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 185s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 185s band 1 6 NA NA NA NA 185s > (x = read_stars(tif)) 185s stars object with 3 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s L7_ETMs.tif 1 54 69 68.91242 86 255 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 185s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 185s band 1 6 NA NA NA NA 185s > # image(x) 185s > gdal_crs(tif) 185s Coordinate Reference System: 185s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 185s wkt: 185s PROJCRS["SIRGAS 2000 / UTM zone 25S", 185s BASEGEOGCRS["SIRGAS 2000", 185s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 185s ELLIPSOID["GRS 1980",6378137,298.257222101, 185s LENGTHUNIT["metre",1]]], 185s PRIMEM["Greenwich",0, 185s ANGLEUNIT["degree",0.0174532925199433]], 185s ID["EPSG",4674]], 185s CONVERSION["UTM zone 25S", 185s METHOD["Transverse Mercator", 185s ID["EPSG",9807]], 185s PARAMETER["Latitude of natural origin",0, 185s ANGLEUNIT["degree",0.0174532925199433], 185s ID["EPSG",8801]], 185s PARAMETER["Longitude of natural origin",-33, 185s ANGLEUNIT["degree",0.0174532925199433], 185s ID["EPSG",8802]], 185s PARAMETER["Scale factor at natural origin",0.9996, 185s SCALEUNIT["unity",1], 185s ID["EPSG",8805]], 185s PARAMETER["False easting",500000, 185s LENGTHUNIT["metre",1], 185s ID["EPSG",8806]], 185s PARAMETER["False northing",10000000, 185s LENGTHUNIT["metre",1], 185s ID["EPSG",8807]]], 185s CS[Cartesian,2], 185s AXIS["easting",east, 185s ORDER[1], 185s LENGTHUNIT["metre",1]], 185s AXIS["northing",north, 185s ORDER[2], 185s LENGTHUNIT["metre",1]], 185s ID["EPSG",31985]] 185s > plot(x) 186s > plot(x, join_zlim = FALSE) 186s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 54 69 68.91242 86 255 186s dimension(s): 186s from to offset delta refsys point x/y 186s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s c 1 6 NA NA NA NA 186s > st_get_dimension_values(x, 3) 186s [1] 1 2 3 4 5 6 186s > 186s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 54 69 68.91242 86 255 186s dimension(s): 186s from to offset delta refsys point values x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 186s band_number 1 6 NA NA NA TRUE 1,...,7 186s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 186s + units::set_units(um) -> bw # units::set_units(µm) -> bw 186s > # set bandwidth midpoint: 186s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 186s + names = "bandwidth_midpoint", point = TRUE)) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 54 69 68.91242 86 255 186s dimension(s): 186s from to offset delta refsys point 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 186s bandwidth_midpoint 1 6 NA NA udunits TRUE 186s values x/y 186s x NULL [x] 186s y NULL [y] 186s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 186s > # set bandwidth intervals: 186s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 54 69 68.91242 86 255 186s dimension(s): 186s from to offset delta refsys point 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 186s bandwidth 1 6 NA NA udunits NA 186s values x/y 186s x NULL [x] 186s y NULL [y] 186s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 186s > 186s > x + x 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 2 108 138 137.8248 172 510 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > x * x 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > x[,,,1:3] 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 21 58 70 70.36041 83 255 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 3 NA NA NA NA 186s > x[,1:100,100:200,] 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 13 54 65 67.21531 77 252 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > sqrt(x) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > st_apply(x, 3, min) 186s stars object with 1 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s min 1 3 15 18.5 29.25 47 186s dimension(s): 186s from to 186s band 1 6 186s > st_apply(x, 1:2, max) 186s stars object with 2 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s max 55 85 96 99.36018 113 255 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s > st_apply(x, 1:2, range) 187s stars object with 3 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s L7_ETMs.tif 1 50 71 72.43565 96 255 187s dimension(s): 187s from to offset delta refsys point x/y 187s range 1 2 NA NA NA NA 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 187s > 187s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 187s > x = read_stars(geomatrix) 187s > y = st_transform(x, st_crs(4326)) 187s > st_coordinates(x)[1:2,] 187s x y 187s 1 1841000 1144000 187s 2 1841002 1143995 187s > 187s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 187s > if (nc != "" && require(PCICt, quietly = TRUE)) { 187s + print(x <- read_stars(nc)) 187s + print(st_bbox(x)) 187s + s = st_as_stars(st_bbox(x)) # inside = NA 187s + print(st_bbox(s)) 187s + s = st_as_stars(st_bbox(x), inside = TRUE) 187s + print(st_bbox(s)) 187s + s = st_as_stars(st_bbox(x), inside = FALSE) 187s + print(st_bbox(s)) 187s + (s = st_as_stars(st_bbox(x), dy = 1)) 187s + print(st_bbox(s)) 187s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 187s + s = st_as_stars(st_bbox(x), dx = 10) 187s + print(st_bbox(s)) 187s + s = st_as_stars(st_bbox(x), dx = 20) 187s + print(st_bbox(s)) 187s + x1 = x 187s + st_crs(x1) = "OGC:CRS84" 187s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 187s + 187s + df = as.data.frame(x) 187s + if (require(units, quietly = TRUE)) 187s + print(units::drop_units(x)) 187s + 187s + print(dimnames(x)) 187s + dimnames(x) <- letters[1:3] 187s + print(dimnames(x)) 187s + } # PCICt 187s > 187s > st_as_stars() 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s values 0 0 0 0 0 0 187s dimension(s): 187s from to offset delta refsys x/y 187s x 1 360 -180 1 WGS 84 (CRS84) [x] 187s y 1 180 90 -1 WGS 84 (CRS84) [y] 187s > 187s > # multiple sub-datasets: 187s > nc_red = system.file("nc/reduced.nc", package = "stars") 187s > red = read_stars(nc_red) 187s sst, anom, err, ice, 187s > red 187s stars object with 4 dimensions and 4 attributes 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 187s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 187s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 187s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 187s dimension(s): 187s from to offset delta refsys x/y 187s x 1 180 -1 2 NA [x] 187s y 1 90 90 -2 NA [y] 187s zlev 1 1 0 [m] NA NA 187s time 1 1 1981-12-31 UTC NA POSIXct 187s > plot(red) 187s > 187s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 187s > st_bbox(x) 187s xmin ymin xmax ymax 187s 288776.3 9120475.8 289061.3 9120760.8 187s > x = read_stars(tif) 187s > merge(split(x, "band")) 187s stars object with 3 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 187s dimension(s): 187s from to offset delta refsys point values 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 187s attributes 1 6 NA NA NA NA X1,...,X6 187s x/y 187s x [x] 187s y [y] 187s attributes 187s > 187s > read_stars(c(tif,tif)) # merges as attributes 187s stars object with 3 dimensions and 2 attributes 187s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 1 54 69 68.91242 86 255 188s L7_ETMs.tif.1 1 54 69 68.91242 86 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > read_stars(c(tif,tif), along = "sensor") 188s stars object with 4 dimensions and 1 attribute 188s attribute(s), summary of first 1e+05 cells: 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 47 65 76 77.3419 87 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s sensor 1 2 NA NA NA NA 188s > read_stars(c(tif,tif), along = 4) 188s stars object with 4 dimensions and 1 attribute 188s attribute(s), summary of first 1e+05 cells: 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 47 65 76 77.3419 87 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s new_dim 1 2 NA NA NA NA 188s > read_stars(c(tif,tif), along = "band") 188s stars object with 3 dimensions and 1 attribute 188s attribute(s), summary of first 1e+05 cells: 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 47 65 76 77.3419 87 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 12 NA NA NA NA 188s > read_stars(c(tif,tif), along = 3) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s), summary of first 1e+05 cells: 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 47 65 76 77.3419 87 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 12 NA NA NA NA 188s > 188s > # cut: 188s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 188s > x = read_stars(tif) 188s > cut(x, c(0, 50, 100, 255)) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s): 188s L7_ETMs.tif 188s (0,50] :156060 188s (50,100] :503764 188s (100,255]: 77264 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 188s stars object with 2 dimensions and 1 attribute 188s attribute(s): 188s L7_ETMs.tif 188s (0,50] : 1 188s (50,100] :117134 188s (100,255]: 5713 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 188s > 188s > st_bbox(st_dimensions(x)) 188s xmin ymin xmax ymax 188s 288776.3 9110728.8 298722.8 9120760.8 188s > x[x < 0] = NA 188s > x[is.na(x)] = 0 188s > 188s > # c: 188s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 188s > if (FALSE && f != "") { 188s + files = c("avhrr-only-v2.19810901.nc", 188s + "avhrr-only-v2.19810902.nc", 188s + "avhrr-only-v2.19810903.nc", 188s + "avhrr-only-v2.19810904.nc", 188s + "avhrr-only-v2.19810905.nc", 188s + "avhrr-only-v2.19810906.nc", 188s + "avhrr-only-v2.19810907.nc", 188s + "avhrr-only-v2.19810908.nc", 188s + "avhrr-only-v2.19810909.nc") 188s + l = list() 188s + for (f in files) { 188s + from = system.file(paste0("netcdf/", f), package = "starsdata") 188s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 188s + } 188s + ret = do.call(c, l) 188s + print(ret) 188s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 188s + print(ret) 188s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 188s + #print(ret) 188s + } 188s > 188s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 188s from to point values 188s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 188s > 188s > if (FALSE && require("starsdata", quietly = TRUE)) { 188s + # curvilinear: 188s + s5p = system.file( 188s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 188s + package = "starsdata") 188s + print(s5p) 188s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 188s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 188s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 188s + lat = read_stars(lat_ds) 188s + lon = read_stars(lon_ds) 188s + nit = read_stars(nit_ds) 188s + nit[[1]][nit[[1]] > 9e+36] = NA 188s + 188s + ll = setNames(c(lon, lat), c("x", "y")) 188s + nit.c = st_as_stars(nit, curvilinear = ll) 188s + print(nit.c) 188s + 188s + s5p = system.file( 188s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 188s + package = "starsdata") 188s + nit.c2 = read_stars(s5p, 188s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 188s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 188s + print(all.equal(nit.c, nit.c2)) 188s + } 188s > 188s BEGIN TEST subset.R 188s 188s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 188s Copyright (C) 2025 The R Foundation for Statistical Computing 188s Platform: x86_64-pc-linux-gnu 188s 188s R is free software and comes with ABSOLUTELY NO WARRANTY. 188s You are welcome to redistribute it under certain conditions. 188s Type 'license()' or 'licence()' for distribution details. 188s 188s R is a collaborative project with many contributors. 188s Type 'contributors()' for more information and 188s 'citation()' on how to cite R or R packages in publications. 188s 188s Type 'demo()' for some demos, 'help()' for on-line help, or 188s 'help.start()' for an HTML browser interface to help. 188s Type 'q()' to quit R. 188s 188s > suppressPackageStartupMessages(library(stars)) 189s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 189s > x = read_stars(tif) 189s > y = st_set_dimensions(x, "band", point = TRUE) 189s > y[,1:10, 1:10, c(1,4,3,2)] 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 25 45 57 56.535 64 97 189s dimension(s): 189s from to offset delta refsys point values x/y 189s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 189s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 189s band 1 4 NA NA NA TRUE 1,...,2 189s > y = st_set_dimensions(x, "band", point = NA) 189s > y[,1:10, 1:10, c(1,4,3,2)] 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 25 45 57 56.535 64 97 189s dimension(s): 189s from to offset delta refsys point values x/y 189s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 189s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 189s band 1 4 NA NA NA NA [1,2),...,[2,3) 189s > y = st_set_dimensions(x, "band", point = FALSE) 189s > y[,1:10, 1:10, c(1,4,3,2)] 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 25 45 57 56.535 64 97 189s dimension(s): 189s from to offset delta refsys point values x/y 189s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 189s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 189s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 189s > y = st_set_dimensions(x, "band", values = letters[1:6]) 189s > y[,1:10, 1:10, c(1,4,3,2)] 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 25 45 57 56.535 64 97 189s dimension(s): 189s from to offset delta refsys point values x/y 189s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 189s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 189s band 1 4 NA NA NA NA a,...,b 189s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 189s > y[,1:10, 1:10, c(1,4,3,2)] 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 25 45 57 56.535 64 97 189s dimension(s): 189s from to offset delta refsys point values x/y 189s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 189s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 189s band 1 4 NA NA NA NA a,...,b 189s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 189s > y[,1:10, 1:10, c(1,4,3,2)] 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 25 45 57 56.535 64 97 189s dimension(s): 189s from to offset delta refsys point values x/y 189s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 189s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 189s band 1 4 NA NA NA TRUE a,...,b 189s > 189s BEGIN TEST testthat.R 189s 189s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 189s Copyright (C) 2025 The R Foundation for Statistical Computing 189s Platform: x86_64-pc-linux-gnu 189s 189s R is free software and comes with ABSOLUTELY NO WARRANTY. 189s You are welcome to redistribute it under certain conditions. 189s Type 'license()' or 'licence()' for distribution details. 189s 189s R is a collaborative project with many contributors. 189s Type 'contributors()' for more information and 189s 'citation()' on how to cite R or R packages in publications. 189s 189s Type 'demo()' for some demos, 'help()' for on-line help, or 189s 'help.start()' for an HTML browser interface to help. 189s Type 'q()' to quit R. 189s 189s > ## load dependencies 189s > library(testthat) 189s > suppressPackageStartupMessages(library(stars)) 189s > 189s > ## test package 189s > test_check("stars") 193s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 193s 193s == Skipped tests (5) =========================================================== 193s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 193s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 193s * {cubble} is not installed (1): 'test-cubble.R:2:3' 193s 193s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 193s > 193s BEGIN TEST tidy.R 193s 193s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 193s Copyright (C) 2025 The R Foundation for Statistical Computing 193s Platform: x86_64-pc-linux-gnu 193s 193s R is free software and comes with ABSOLUTELY NO WARRANTY. 193s You are welcome to redistribute it under certain conditions. 193s Type 'license()' or 'licence()' for distribution details. 193s 193s R is a collaborative project with many contributors. 193s Type 'contributors()' for more information and 193s 'citation()' on how to cite R or R packages in publications. 193s 193s Type 'demo()' for some demos, 'help()' for on-line help, or 193s 'help.start()' for an HTML browser interface to help. 193s Type 'q()' to quit R. 193s 193s > suppressPackageStartupMessages(library(stars)) 194s > 194s > if (require(dplyr, quietly = TRUE)) { 194s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 194s + x <- read_stars(tif) 194s + (y <- x %>% select(L7_ETMs.tif)) 194s + (y <- x %>% filter(band > 2)) 194s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 194s + x %>% pull(L7_ETMs.tif) %>% class() 194s + x %>% filter(x > 289900) 194s + x %>% slice("x", 50:100) 194s + 194s + suppressPackageStartupMessages(library(ggplot2)) 194s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 194s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 194s + coord_equal() 194s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 194s + 194s + 194s + # see https://github.com/r-spatial/stars/issues/539 : 194s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 194s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 194s + 194s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 194s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 194s + try(x - slice(y, 'band', 1)) # fails as expected 194s + y - slice(y, 'band', 1) # runs as expected 194s + } 194s 194s Attaching package: 'dplyr' 194s 194s The following objects are masked from 'package:stats': 194s 194s filter, lag 194s 194s The following objects are masked from 'package:base': 194s 194s intersect, setdiff, setequal, union 194s 194s Error in Ops.units(X[[i]], ...) : 194s both operands of the expression should be "units" objects 194s Error in Ops.units(X[[i]], ...) : 194s both operands of the expression should be "units" objects 194s stars object with 3 dimensions and 1 attribute 194s attribute(s): 194s Min. 1st Qu. Median Mean 3rd Qu. Max. 194s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 194s dimension(s): 194s from to offset delta refsys point x/y 194s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 194s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 194s band 1 6 NA NA NA NA 194s > 194s BEGIN TEST transform.R 195s 195s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 195s Copyright (C) 2025 The R Foundation for Statistical Computing 195s Platform: x86_64-pc-linux-gnu 195s 195s R is free software and comes with ABSOLUTELY NO WARRANTY. 195s You are welcome to redistribute it under certain conditions. 195s Type 'license()' or 'licence()' for distribution details. 195s 195s R is a collaborative project with many contributors. 195s Type 'contributors()' for more information and 195s 'citation()' on how to cite R or R packages in publications. 195s 195s Type 'demo()' for some demos, 'help()' for on-line help, or 195s 'help.start()' for an HTML browser interface to help. 195s Type 'q()' to quit R. 195s 195s > suppressPackageStartupMessages(library(stars)) 195s > #suppressPackageStartupMessages(library(lwgeom)) 195s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 195s > (x = read_stars(geomatrix)) 195s stars object with 2 dimensions and 1 attribute 195s attribute(s): 195s Min. 1st Qu. Median Mean 3rd Qu. Max. 195s geomatrix.tif 74 107 123 126.765 132 255 195s dimension(s): 195s from to offset delta refsys point x/y 195s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 195s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 195s sheared raster with parameters: -5 -5 195s > new = st_crs(4326) 195s > y = st_transform(x, new) 195s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 195s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 195s > image(y, add = TRUE) 195s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 195s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 195s > 195s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 195s > x = read_stars(tif)[,1:10,1:10,1:3] 195s > x_ = st_transform(x, st_crs(4326)) 195s > ## IGNORE_RDIFF_BEGIN 195s > if (require(lwgeom, quietly = TRUE)) { 195s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 195s + st_crs(x_) = st_crs(x__) 195s + print(all.equal(x_,x__)) 195s + 195s + # x__ = st_transform(x, x_) #now in st_warp 195s + # all.equal(x_, x__) 195s + 195s + x = st_xy2sfc(x, as_points = FALSE) 195s + (x_ = st_transform(x, st_crs(4326))) 195s + (x__ = st_transform_proj(x, st_crs(4326))) 195s + print(all.equal(x_,x__,check.attributes = FALSE)) 195s + } 195s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 195s 195s Attaching package: 'lwgeom' 195s 195s The following object is masked from 'package:sf': 195s 195s st_perimeter 195s 195s [1] TRUE 195s Warning messages: 195s 1: In fun(libname, pkgname) : 195s GEOS versions differ: lwgeom has 3.13.0 sf has 3.14.1 195s 2: In fun(libname, pkgname) : 195s PROJ versions differ: lwgeom has 9.5.1 sf has 9.7.0 195s [1] TRUE 195s > Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 195s !is.na(st_crs(x)) is not TRUE 195s ## IGNORE_RDIFF_END 195s > 195s > # nothing to transform: now errs: 195s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 195s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 195s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 195s !is.na(st_crs(x)) is not TRUE 195s > 195s BEGIN TEST warp.R 195s 195s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 195s Copyright (C) 2025 The R Foundation for Statistical Computing 195s Platform: x86_64-pc-linux-gnu 195s 195s R is free software and comes with ABSOLUTELY NO WARRANTY. 195s You are welcome to redistribute it under certain conditions. 195s Type 'license()' or 'licence()' for distribution details. 195s 195s R is a collaborative project with many contributors. 195s Type 'contributors()' for more information and 195s 'citation()' on how to cite R or R packages in publications. 195s 195s Type 'demo()' for some demos, 'help()' for on-line help, or 195s 'help.start()' for an HTML browser interface to help. 195s Type 'q()' to quit R. 195s 195s > suppressPackageStartupMessages(library(stars)) 195s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 195s > x = read_stars(geomatrix) 195s > # can stars reproduce what gdal does, by default? 195s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 195s > y = st_warp(x, x2) 195s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 195s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 195s > names(x2) = names(y) 195s > all.equal(x2, y) # yes? 195s [1] TRUE 195s > 195s > # does gdal reproduce with stars template object? 195s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 195s stars object with 2 dimensions and 1 attribute 195s attribute(s): 195s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 195s file.tif 74 115 123 126.4289 132 255 224 195s dimension(s): 195s from to offset delta refsys point x/y 195s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 195s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 195s > 195s > # does gdal reproduce what stars does, default cell size? 195s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 195s stars object with 2 dimensions and 1 attribute 195s attribute(s): 195s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 195s geomatrix.tif 74 115 123 126.4289 132 255 224 195s dimension(s): 195s from to offset delta refsys x/y 195s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 195s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 195s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 195s stars object with 2 dimensions and 1 attribute 195s attribute(s): 195s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 195s file.tif 74 115 123 126.4289 132 255 224 195s dimension(s): 195s from to offset delta refsys point x/y 195s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 195s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 195s > 195s > # try with multiple bands: 195s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 195s > (x1 = read_stars(tif)) 195s stars object with 3 dimensions and 1 attribute 195s attribute(s): 196s Min. 1st Qu. Median Mean 3rd Qu. Max. 196s L7_ETMs.tif 1 54 69 68.91242 86 255 196s dimension(s): 196s from to offset delta refsys point x/y 196s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 196s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 196s band 1 6 NA NA NA NA 196s > tifcp = tempfile(fileext = ".tif") 196s > file.copy(tif, tifcp) 196s [1] TRUE 196s > x1p = read_stars(tifcp, proxy = TRUE) 196s > st_dimensions(x1p) 196s from to offset delta refsys point x/y 196s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 196s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 196s band 1 6 NA NA NA NA 196s > (x1a = st_warp(x1, crs = st_crs(4326))) 196s stars object with 3 dimensions and 1 attribute 196s attribute(s): 196s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 196s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 196s dimension(s): 196s from to offset delta refsys x/y 196s x 1 350 -34.92 0.0002592 WGS 84 [x] 196s y 1 352 -7.95 -0.0002592 WGS 84 [y] 196s band 1 6 NA NA NA 196s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 196s stars object with 3 dimensions and 1 attribute 196s attribute(s): 196s Min. 1st Qu. Median Mean 3rd Qu. Max. 196s file.tif 1 54 69 68.91242 86 255 196s dimension(s): 196s from to offset delta refsys point x/y 196s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 196s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 196s band 1 6 NA NA NA NA 196s > 196s > # does gdal reproduce what stars does? Smaller grid: 196s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 196s > # x2 = x2[,2:43,2:43] 196s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 196s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 196s > ### doesn't work: FIXME: check with more recent GDAL: 196s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 196s stars object with 2 dimensions and 1 attribute 196s attribute(s): 196s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 196s file.tif 74 107 123 126.6584 132 255 727 196s dimension(s): 196s from to offset delta refsys point x/y 196s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 196s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 196s > if (interactive()) { plot(y, breaks = "equal") } 196s > names(x2) = names(y) 196s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 196s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 196s > u = unique(as.vector(x2[[1]]-y[[1]])) 196s > 196s > g = st_as_stars() 196s > attr(g, "dimensions")$x$offset = 0 196s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 196s > if (interactive()) { plot(g, axes=TRUE) } 196s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 196s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 196s > all.equal(a, b, check.attributes = FALSE) 196s [1] TRUE 196s > 196s BEGIN TEST write.R 196s 196s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 196s Copyright (C) 2025 The R Foundation for Statistical Computing 196s Platform: x86_64-pc-linux-gnu 196s 196s R is free software and comes with ABSOLUTELY NO WARRANTY. 196s You are welcome to redistribute it under certain conditions. 196s Type 'license()' or 'licence()' for distribution details. 196s 196s R is a collaborative project with many contributors. 196s Type 'contributors()' for more information and 196s 'citation()' on how to cite R or R packages in publications. 196s 196s Type 'demo()' for some demos, 'help()' for on-line help, or 196s 'help.start()' for an HTML browser interface to help. 196s Type 'q()' to quit R. 196s 196s > suppressPackageStartupMessages(library(stars)) 197s > autopkgtest [07:56:25]: test run-unit-test: -----------------------] 197s 197s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 197s > (x = read_stars(tif)) 197s stars object with 3 dimensions and 1 attribute 197s attribute(s): 197s Min. 1st Qu. Median Mean 3rd Qu. Max. 197s L7_ETMs.tif 1 54 69 68.91242 86 255 197s dimension(s): 197s from to offset delta refsys point x/y 197s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 197s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 197s band 1 6 NA NA NA NA 197s > 197s > # write stars object: 197s > write_stars(x, tempfile(), driver = "GTiff") 197s > 197s > # write stars_proxy object: 197s > (x = read_stars(tif, proxy = TRUE)) 197s stars_proxy object with 1 attribute in 1 file(s): 197s $L7_ETMs.tif 197s [1] "[...]/L7_ETMs.tif" 197s 197s dimension(s): 197s from to offset delta refsys point x/y 197s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 197s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 197s band 1 6 NA NA NA NA 197s > write_stars(x, tempfile(), driver = "GTiff") 197s 197s > 197s run-unit-test PASS 197s autopkgtest [07:56:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 198s autopkgtest [07:56:26]: test pkg-r-autopkgtest: 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 288s Preparing to unpack .../libsqlite3-0_3.46.1-9_amd64.deb ... 288s Unpacking libsqlite3-0:amd64 (3.46.1-9) over (3.46.1-8) ... 288s Preparing to unpack .../inetutils-telnet_2%3a2.7-2ubuntu1_amd64.deb ... 288s Unpacking inetutils-telnet (2:2.7-2ubuntu1) over (2:2.6-4ubuntu1) ... 288s Preparing to unpack .../telnet_0.17+2.7-2ubuntu1_all.deb ... 288s Unpacking telnet (0.17+2.7-2ubuntu1) over (0.17+2.6-4ubuntu1) ... 288s Preparing to unpack .../3cpio_0.13.1-1ubuntu1_amd64.deb ... 288s Unpacking 3cpio (0.13.1-1ubuntu1) over (0.12.0-1ubuntu1) ... 288s Setting up 3cpio (0.13.1-1ubuntu1) ... 288s Setting up libsqlite3-0:amd64 (3.46.1-9) ... 288s Setting up inetutils-telnet (2:2.7-2ubuntu1) ... 288s Setting up bzip2 (1.0.8-6build2) ... 288s Setting up rng-tools-debian (2.6build1) ... 289s Setting up telnet (0.17+2.7-2ubuntu1) ... 289s Processing triggers for man-db (2.13.1-1) ... 289s Processing triggers for libc-bin (2.42-2ubuntu4) ... 289s autopkgtest [07:57:57]: upgrading testbed (apt dist-upgrade and autopurge) 290s Reading package lists... 290s Building dependency tree... 290s Reading state information... 290s Calculating upgrade... 290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 290s Reading package lists... 290s Building dependency tree... 290s Reading state information... 290s Solving dependencies... 290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 290s autopkgtest [07:57:58]: rebooting testbed after setup commands that affected boot 322s Reading package lists... 322s Building dependency tree... 322s Reading state information... 322s Solving dependencies... 322s The following NEW packages will be installed: 322s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 322s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 322s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 322s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 322s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 322s gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu 322s icu-devtools javascript-common libabsl20260107 libaec0 libaom3 322s libarmadillo15 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 322s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 322s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 322s libgav1-2 libgcc-15-dev libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 322s libgfortran-15-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 322s libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 322s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libhwy1t64 322s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 322s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 322s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 322s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 322s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 322s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 322s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 322s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 322s libmpc3 libmuparser2v5 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 322s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 322s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 322s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 322s libpoppler147 libpq5 libproj25 libqhull-r8.0 libquadmath0 libreadline-dev 322s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 322s libstdc++-15-dev libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 322s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 322s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 322s libxrender1 libxss1 libxt6t64 libyuv0 libzstd-dev mysql-common 322s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 322s pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core r-base-dev 322s r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix 322s r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr 322s r-cran-cftime r-cran-class r-cran-classint r-cran-cli r-cran-clue 322s r-cran-cluster r-cran-codetools r-cran-collapse r-cran-commonmark 322s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 322s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 322s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 322s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 322s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 322s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 322s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 322s r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 322s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 322s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 322s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 322s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 322s r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme r-cran-openssl 322s r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar r-cran-pkgbuild 322s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm r-cran-polyclip 322s r-cran-praise r-cran-processx r-cran-promises r-cran-proxy r-cran-ps 322s r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs r-cran-raster 322s r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 322s r-cran-rdpack r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 322s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 322s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 322s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 322s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 322s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 322s r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stars r-cran-stringi 322s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 322s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 322s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 322s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 322s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 322s unzip x11-common xdg-utils zip zlib1g-dev 322s 0 upgraded, 344 newly installed, 0 to remove and 0 not upgraded. 322s Need to get 401 MB of archives. 322s After this operation, 1152 MB of additional disk space will be used. 322s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 322s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 322s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 323s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 323s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 323s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 323s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 323s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 323s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 323s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 323s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 323s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 324s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 324s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 324s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 324s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 324s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 324s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 324s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 324s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 324s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 324s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 324s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 324s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 324s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 324s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 324s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 324s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 324s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 324s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 324s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 324s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 324s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 324s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 325s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 325s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 325s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 325s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 325s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 325s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 325s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 325s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 325s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 325s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 325s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 325s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 325s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 325s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 325s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 325s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 325s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 325s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 325s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 325s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 325s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 325s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 325s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 325s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 325s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 325s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 325s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 325s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 325s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 325s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 325s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 325s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 325s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 325s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 325s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 325s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 325s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 325s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 325s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 325s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 325s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 325s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 325s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 325s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 325s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 325s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 325s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 325s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 325s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 325s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 325s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 325s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 325s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 325s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 325s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 325s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 326s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 326s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 326s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 326s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 326s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 326s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 327s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 327s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 327s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 327s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 327s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 327s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 327s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 327s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 327s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 327s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 327s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 327s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 327s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 327s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 327s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 327s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 327s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 327s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 327s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 327s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 327s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 327s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 328s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 328s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 328s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 328s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 328s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 328s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu2 [296 kB] 328s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 328s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 328s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 328s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 328s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 328s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 328s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 328s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 328s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 328s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 328s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 328s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 328s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 328s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 328s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 328s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 328s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 328s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 328s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 328s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 328s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 328s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 328s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 328s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 328s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 328s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 328s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 328s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 328s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 328s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 328s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 328s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 328s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 328s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 328s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 328s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 328s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 328s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 328s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 328s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 328s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 328s Get:166 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 328s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [376 kB] 328s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 328s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 328s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 328s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 328s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 329s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 329s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 329s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 329s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 329s Get:177 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 329s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 329s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 329s Get:180 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 329s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 329s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 329s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 329s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 329s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 329s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 329s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 329s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 329s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 329s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 329s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 329s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 329s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 329s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 329s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 329s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 329s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 329s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 329s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 330s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 330s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 330s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 330s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 330s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 330s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 330s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 330s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 330s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 330s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 330s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 330s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 330s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 330s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 330s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 330s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 330s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 330s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 330s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 330s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 330s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 330s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 330s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 330s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 330s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 330s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 330s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 330s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 330s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 330s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 330s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 330s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 330s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 330s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 330s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 330s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 330s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 330s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 330s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 330s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 330s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 330s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 330s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 330s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 330s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 330s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 330s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 330s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 330s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 330s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 330s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 330s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 330s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 330s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 330s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 330s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 330s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 330s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 330s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 330s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 330s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 330s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 330s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 331s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 331s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 331s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 331s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 331s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 331s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 331s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 331s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 331s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 331s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 331s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 331s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 331s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 331s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 331s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 331s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 331s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 331s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 331s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 331s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 331s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 331s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 331s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 331s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 331s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 331s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 331s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 331s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 331s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 331s Get:292 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 331s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 332s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 332s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 332s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 332s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 332s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 332s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 332s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 332s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 332s Get:302 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rnetcdf amd64 2.11-1-1 [242 kB] 332s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 332s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 332s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 332s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 332s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 332s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 332s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 332s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 332s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 332s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 332s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 332s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 332s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 332s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 333s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 333s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 333s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB] 333s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 333s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 333s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 333s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 333s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 333s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 333s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 333s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 333s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 333s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 333s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 333s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 333s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 333s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 333s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 333s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 333s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 333s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 334s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 334s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 334s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 334s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 334s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 334s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 334s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 335s Preconfiguring packages ... 335s Fetched 401 MB in 12s (33.1 MB/s) 335s Selecting previously unselected package libisl23:amd64. 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 335s Preparing to unpack .../000-libisl23_0.27-1build1_amd64.deb ... 335s Unpacking libisl23:amd64 (0.27-1build1) ... 335s Selecting previously unselected package libmpc3:amd64. 335s Preparing to unpack .../001-libmpc3_1.3.1-2_amd64.deb ... 335s Unpacking libmpc3:amd64 (1.3.1-2) ... 335s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 335s Preparing to unpack .../002-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package cpp-15. 335s Preparing to unpack .../003-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package cpp-x86-64-linux-gnu. 335s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 335s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 335s Selecting previously unselected package cpp. 335s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 335s Unpacking cpp (4:15.2.0-4ubuntu1) ... 335s Selecting previously unselected package libcc1-0:amd64. 335s Preparing to unpack .../006-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libgomp1:amd64. 335s Preparing to unpack .../007-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libitm1:amd64. 335s Preparing to unpack .../008-libitm1_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libasan8:amd64. 335s Preparing to unpack .../009-libasan8_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package liblsan0:amd64. 335s Preparing to unpack .../010-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libtsan2:amd64. 335s Preparing to unpack .../011-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libubsan1:amd64. 335s Preparing to unpack .../012-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libhwasan0:amd64. 335s Preparing to unpack .../013-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libquadmath0:amd64. 335s Preparing to unpack .../014-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package libgcc-15-dev:amd64. 335s Preparing to unpack .../015-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 335s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 335s Preparing to unpack .../016-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 335s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package gcc-15. 337s Preparing to unpack .../017-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package gcc-x86-64-linux-gnu. 337s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 337s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 337s Selecting previously unselected package gcc. 337s Preparing to unpack .../019-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 337s Unpacking gcc (4:15.2.0-4ubuntu1) ... 337s Selecting previously unselected package libstdc++-15-dev:amd64. 337s Preparing to unpack .../020-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package g++-15-x86-64-linux-gnu. 337s Preparing to unpack .../021-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package g++-15. 337s Preparing to unpack .../022-g++-15_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking g++-15 (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package g++-x86-64-linux-gnu. 337s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 337s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 337s Selecting previously unselected package g++. 337s Preparing to unpack .../024-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 337s Unpacking g++ (4:15.2.0-4ubuntu1) ... 337s Selecting previously unselected package build-essential. 337s Preparing to unpack .../025-build-essential_12.12ubuntu2_amd64.deb ... 337s Unpacking build-essential (12.12ubuntu2) ... 337s Selecting previously unselected package dctrl-tools. 337s Preparing to unpack .../026-dctrl-tools_2.24-3build4_amd64.deb ... 337s Unpacking dctrl-tools (2.24-3build4) ... 337s Selecting previously unselected package fonts-dejavu-mono. 337s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8build1_all.deb ... 337s Unpacking fonts-dejavu-mono (2.37-8build1) ... 337s Selecting previously unselected package fonts-dejavu-core. 337s Preparing to unpack .../028-fonts-dejavu-core_2.37-8build1_all.deb ... 337s Unpacking fonts-dejavu-core (2.37-8build1) ... 337s Selecting previously unselected package fontconfig-config. 337s Preparing to unpack .../029-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 337s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 337s Selecting previously unselected package libfontconfig1:amd64. 337s Preparing to unpack .../030-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 337s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 337s Selecting previously unselected package fontconfig. 337s Preparing to unpack .../031-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 337s Unpacking fontconfig (2.17.1-3ubuntu1) ... 337s Selecting previously unselected package fonts-font-awesome. 337s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 337s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 337s Selecting previously unselected package fonts-glyphicons-halflings. 337s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 337s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 337s Selecting previously unselected package fonts-mathjax. 337s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 337s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 337s Selecting previously unselected package gdal-data. 337s Preparing to unpack .../035-gdal-data_3.12.1+dfsg-1_all.deb ... 337s Unpacking gdal-data (3.12.1+dfsg-1) ... 337s Selecting previously unselected package gdal-plugins:amd64. 337s Preparing to unpack .../036-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 337s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 337s Selecting previously unselected package libgfortran5:amd64. 337s Preparing to unpack .../037-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package libgfortran-15-dev:amd64. 337s Preparing to unpack .../038-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 337s Preparing to unpack .../039-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package gfortran-15. 337s Preparing to unpack .../040-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 337s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 337s Selecting previously unselected package gfortran-x86-64-linux-gnu. 337s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 337s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 337s Selecting previously unselected package gfortran. 337s Preparing to unpack .../042-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 337s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 337s Selecting previously unselected package icu-devtools. 337s Preparing to unpack .../043-icu-devtools_78.2-1ubuntu1_amd64.deb ... 337s Unpacking icu-devtools (78.2-1ubuntu1) ... 337s Selecting previously unselected package javascript-common. 337s Preparing to unpack .../044-javascript-common_12+nmu1_all.deb ... 337s Unpacking javascript-common (12+nmu1) ... 337s Selecting previously unselected package libabsl20260107:amd64. 337s Preparing to unpack .../045-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 337s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 337s Selecting previously unselected package libaec0:amd64. 337s Preparing to unpack .../046-libaec0_1.1.5-1_amd64.deb ... 337s Unpacking libaec0:amd64 (1.1.5-1) ... 337s Selecting previously unselected package libaom3:amd64. 337s Preparing to unpack .../047-libaom3_3.13.1-2_amd64.deb ... 337s Unpacking libaom3:amd64 (3.13.1-2) ... 337s Selecting previously unselected package libblas3:amd64. 337s Preparing to unpack .../048-libblas3_3.12.1-7ubuntu1_amd64.deb ... 337s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 337s Selecting previously unselected package liblapack3:amd64. 337s Preparing to unpack .../049-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 337s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 337s Selecting previously unselected package libarpack2t64:amd64. 337s Preparing to unpack .../050-libarpack2t64_3.9.1-6_amd64.deb ... 337s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 337s Selecting previously unselected package libsuperlu7:amd64. 337s Preparing to unpack .../051-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 337s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 337s Selecting previously unselected package libarmadillo15. 337s Preparing to unpack .../052-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 337s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 337s Selecting previously unselected package libdav1d7:amd64. 337s Preparing to unpack .../053-libdav1d7_1.5.3-1_amd64.deb ... 337s Unpacking libdav1d7:amd64 (1.5.3-1) ... 337s Selecting previously unselected package libgav1-2:amd64. 337s Preparing to unpack .../054-libgav1-2_0.20.0-2build1_amd64.deb ... 337s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 337s Selecting previously unselected package libjpeg-turbo8:amd64. 337s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 337s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 337s Selecting previously unselected package libjpeg8:amd64. 337s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_amd64.deb ... 337s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 337s Selecting previously unselected package libyuv0:amd64. 337s Preparing to unpack .../057-libyuv0_0.0.1922.20260106-1_amd64.deb ... 337s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 337s Selecting previously unselected package libavif16:amd64. 337s Preparing to unpack .../058-libavif16_1.3.0-1ubuntu3_amd64.deb ... 337s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 337s Selecting previously unselected package libblas-dev:amd64. 337s 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previously unselected package libde265-0:amd64. 337s Preparing to unpack .../070-libde265-0_1.0.16-1build1_amd64.deb ... 337s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 337s Selecting previously unselected package libdeflate0:amd64. 337s Preparing to unpack .../071-libdeflate0_1.23-2_amd64.deb ... 337s Unpacking libdeflate0:amd64 (1.23-2) ... 337s Selecting previously unselected package libdeflate-dev:amd64. 337s Preparing to unpack .../072-libdeflate-dev_1.23-2_amd64.deb ... 337s Unpacking libdeflate-dev:amd64 (1.23-2) ... 337s Selecting previously unselected package libfyba0t64:amd64. 337s Preparing to unpack .../073-libfyba0t64_4.1.1-11build2_amd64.deb ... 337s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 337s Selecting previously unselected package libminizip1t64:amd64. 337s Preparing to unpack .../074-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 337s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 337s Selecting previously unselected package libfreexl1:amd64. 337s Preparing to unpack .../075-libfreexl1_2.0.0-1build3_amd64.deb ... 337s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 337s Selecting previously unselected package libgeos3.14.1:amd64. 337s Preparing to unpack .../076-libgeos3.14.1_3.14.1-2_amd64.deb ... 337s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 337s Selecting previously unselected package libgeos-c1t64:amd64. 337s Preparing to unpack .../077-libgeos-c1t64_3.14.1-2_amd64.deb ... 337s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 337s Selecting previously unselected package proj-data. 337s Preparing to unpack .../078-proj-data_9.7.1-1_all.deb ... 337s Unpacking proj-data (9.7.1-1) ... 337s Selecting previously unselected package libjbig0:amd64. 337s Preparing to unpack .../079-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 337s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 337s Selecting previously unselected package liblerc4:amd64. 337s Preparing to unpack .../080-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 337s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 337s Selecting previously unselected package libsharpyuv0:amd64. 337s Preparing to unpack .../081-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 337s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 337s Selecting previously unselected package libwebp7:amd64. 337s Preparing to unpack .../082-libwebp7_1.5.0-0.1build1_amd64.deb ... 337s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 337s Selecting previously unselected package libtiff6:amd64. 337s Preparing to unpack .../083-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 337s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 337s Selecting previously unselected package libproj25:amd64. 337s Preparing to unpack .../084-libproj25_9.7.1-1_amd64.deb ... 337s Unpacking libproj25:amd64 (9.7.1-1) ... 337s Selecting previously unselected package libgeotiff5:amd64. 337s Preparing to unpack .../085-libgeotiff5_1.7.4-1_amd64.deb ... 337s Unpacking libgeotiff5:amd64 (1.7.4-1) ... 337s Selecting previously unselected package libgif7:amd64. 337s Preparing to unpack .../086-libgif7_5.2.2-1ubuntu3_amd64.deb ... 337s Unpacking libgif7:amd64 (5.2.2-1ubuntu3) ... 337s Selecting previously unselected package libsz2:amd64. 337s Preparing to unpack .../087-libsz2_1.1.5-1_amd64.deb ... 337s Unpacking libsz2:amd64 (1.1.5-1) ... 337s Selecting previously unselected package libhdf4-0:amd64. 337s Preparing to unpack .../088-libhdf4-0_4.3.1-2_amd64.deb ... 337s Unpacking libhdf4-0:amd64 (4.3.1-2) ... 337s Selecting previously unselected package libhdf5-310:amd64. 337s Preparing to unpack .../089-libhdf5-310_1.14.6+repack-2_amd64.deb ... 337s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 337s Selecting previously unselected package libheif-plugin-aomdec:amd64. 337s Preparing to unpack .../090-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 337s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 337s Selecting previously unselected package libheif-plugin-libde265:amd64. 337s Preparing to unpack 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(0.9.8+dfsg-2) ... 337s Selecting previously unselected package libkmlbase1t64:amd64. 337s Preparing to unpack .../097-libkmlbase1t64_1.3.0-13_amd64.deb ... 337s Unpacking libkmlbase1t64:amd64 (1.3.0-13) ... 337s Selecting previously unselected package libkmldom1t64:amd64. 337s Preparing to unpack .../098-libkmldom1t64_1.3.0-13_amd64.deb ... 337s Unpacking libkmldom1t64:amd64 (1.3.0-13) ... 337s Selecting previously unselected package libkmlengine1t64:amd64. 337s Preparing to unpack .../099-libkmlengine1t64_1.3.0-13_amd64.deb ... 337s Unpacking libkmlengine1t64:amd64 (1.3.0-13) ... 337s Selecting previously unselected package libmuparser2v5:amd64. 337s Preparing to unpack .../100-libmuparser2v5_2.3.4-2_amd64.deb ... 337s Unpacking libmuparser2v5:amd64 (2.3.4-2) ... 337s Selecting previously unselected package mysql-common. 337s Preparing to unpack .../101-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 337s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 337s Selecting previously unselected package libmysqlclient24:amd64. 337s Preparing to unpack .../102-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 337s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 337s Selecting previously unselected package libhdf5-hl-310:amd64. 337s Preparing to unpack .../103-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 337s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 337s Selecting previously unselected package libnetcdf22:amd64. 337s Preparing to unpack .../104-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 337s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 337s Selecting previously unselected package libltdl7:amd64. 337s Preparing to unpack .../105-libltdl7_2.5.4-9_amd64.deb ... 337s Unpacking libltdl7:amd64 (2.5.4-9) ... 337s Selecting previously unselected package libodbc2:amd64. 337s Preparing to unpack .../106-libodbc2_2.3.14-1_amd64.deb ... 337s Unpacking libodbc2:amd64 (2.3.14-1) ... 337s Selecting previously unselected package unixodbc-common. 337s Preparing to unpack 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(18.1-2) ... 338s Selecting previously unselected package libqhull-r8.0:amd64. 338s Preparing to unpack .../113-libqhull-r8.0_2020.2-8_amd64.deb ... 338s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 338s Selecting previously unselected package librttopo1:amd64. 338s Preparing to unpack .../114-librttopo1_1.1.0-4_amd64.deb ... 338s Unpacking librttopo1:amd64 (1.1.0-4) ... 338s Selecting previously unselected package libspatialite8t64:amd64. 338s Preparing to unpack .../115-libspatialite8t64_5.1.0-3ubuntu1_amd64.deb ... 338s Unpacking libspatialite8t64:amd64 (5.1.0-3ubuntu1) ... 338s Selecting previously unselected package libxerces-c3.2t64:amd64. 338s Preparing to unpack .../116-libxerces-c3.2t64_3.2.4+debian-1.3build2_amd64.deb ... 338s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build2) ... 338s Selecting previously unselected package libgdal38:amd64. 338s Preparing to unpack .../117-libgdal38_3.12.1+dfsg-1_amd64.deb ... 338s Unpacking libgdal38:amd64 (3.12.1+dfsg-1) ... 338s Selecting previously unselected package libgraphite2-3:amd64. 338s Preparing to unpack .../118-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 338s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 338s Selecting previously unselected package libharfbuzz0b:amd64. 338s Preparing to unpack .../119-libharfbuzz0b_12.3.1-1_amd64.deb ... 338s Unpacking libharfbuzz0b:amd64 (12.3.1-1) ... 338s Selecting previously unselected package x11-common. 338s Preparing to unpack .../120-x11-common_1%3a7.7+24ubuntu1_all.deb ... 338s Unpacking x11-common (1:7.7+24ubuntu1) ... 338s Selecting previously unselected package libice6:amd64. 338s Preparing to unpack .../121-libice6_2%3a1.1.1-1build1_amd64.deb ... 338s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 338s Selecting previously unselected package libicu-dev:amd64. 338s Preparing to unpack .../122-libicu-dev_78.2-1ubuntu1_amd64.deb ... 338s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 338s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 338s Preparing to unpack .../123-libjpeg-turbo8-dev_2.1.5-4ubuntu2_amd64.deb ... 338s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu2) ... 338s Selecting previously unselected package libjpeg8-dev:amd64. 338s Preparing to unpack .../124-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 338s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 338s Selecting previously unselected package libjpeg-dev:amd64. 338s Preparing to unpack .../125-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 338s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 338s Selecting previously unselected package libjs-bootstrap. 338s Preparing to unpack .../126-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 338s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 338s Selecting previously unselected package libjs-popper.js. 338s Preparing to unpack .../127-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 338s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 338s Selecting previously unselected package libjs-bootstrap4. 338s 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.../133-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 338s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 338s Selecting previously unselected package libjs-sifter.js. 338s Preparing to unpack .../134-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 338s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 338s Selecting previously unselected package libjs-microplugin.js. 338s Preparing to unpack .../135-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ... 338s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 338s Selecting previously unselected package libjs-jquery-selectize.js. 338s Preparing to unpack .../136-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 338s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 338s Selecting previously unselected package libjs-jquery-ui. 338s Preparing to unpack .../137-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 338s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 338s Selecting previously unselected package libjs-json. 338s Preparing to unpack .../138-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 338s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 338s Selecting previously unselected package libjs-prettify. 338s Preparing to unpack .../139-libjs-prettify_2015.12.04+dfsg-2_all.deb ... 338s Unpacking libjs-prettify (2015.12.04+dfsg-2) ... 338s Selecting previously unselected package liblapack-dev:amd64. 338s Preparing to unpack .../140-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 338s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 338s Selecting previously unselected package liblua5.4-0:amd64. 338s Preparing to unpack .../141-liblua5.4-0_5.4.8-1_amd64.deb ... 338s Unpacking liblua5.4-0:amd64 (5.4.8-1) ... 338s Selecting previously unselected package libncurses-dev:amd64. 338s Preparing to unpack .../142-libncurses-dev_6.6+20251231-1_amd64.deb ... 338s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 338s Selecting previously unselected package libthai-data. 338s Preparing to unpack .../143-libthai-data_0.1.30-1_all.deb ... 338s Unpacking libthai-data (0.1.30-1) ... 338s Selecting previously unselected package libthai0:amd64. 338s Preparing to unpack .../144-libthai0_0.1.30-1_amd64.deb ... 338s Unpacking libthai0:amd64 (0.1.30-1) ... 338s Selecting previously unselected package libpango-1.0-0:amd64. 338s Preparing to unpack .../145-libpango-1.0-0_1.57.0-1_amd64.deb ... 338s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ... 338s Selecting previously unselected package libpangoft2-1.0-0:amd64. 338s Preparing to unpack .../146-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 338s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 338s Selecting previously unselected package libpangocairo-1.0-0:amd64. 338s Preparing to unpack .../147-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 338s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 339s Selecting previously unselected package libpaper2:amd64. 339s Preparing to unpack .../148-libpaper2_2.2.5-0.3build1_amd64.deb ... 339s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 339s Selecting previously unselected package libpaper-utils. 339s Preparing to unpack .../149-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 339s Unpacking libpaper-utils (2.2.5-0.3build1) ... 339s Selecting previously unselected package libpcre2-16-0:amd64. 339s Preparing to unpack .../150-libpcre2-16-0_10.46-1_amd64.deb ... 339s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 339s Selecting previously unselected package libpcre2-32-0:amd64. 339s Preparing to unpack .../151-libpcre2-32-0_10.46-1_amd64.deb ... 339s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 339s Selecting previously unselected package libpcre2-posix3:amd64. 339s Preparing to unpack .../152-libpcre2-posix3_10.46-1_amd64.deb ... 339s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 339s Selecting previously unselected package libpcre2-dev:amd64. 339s Preparing to unpack .../153-libpcre2-dev_10.46-1_amd64.deb ... 339s Unpacking libpcre2-dev:amd64 (10.46-1) ... 339s Selecting previously unselected package libpkgconf3:amd64. 339s Preparing to unpack .../154-libpkgconf3_1.8.1-4build1_amd64.deb ... 339s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 339s Selecting previously unselected package zlib1g-dev:amd64. 339s Preparing to unpack .../155-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 339s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 339s Selecting previously unselected package libpng-dev:amd64. 339s Preparing to unpack .../156-libpng-dev_1.6.54-1_amd64.deb ... 339s Unpacking libpng-dev:amd64 (1.6.54-1) ... 339s Selecting previously unselected package libreadline-dev:amd64. 339s Preparing to unpack .../157-libreadline-dev_8.3-3_amd64.deb ... 339s Unpacking libreadline-dev:amd64 (8.3-3) ... 339s Selecting previously unselected package libsm6:amd64. 339s Preparing to unpack .../158-libsm6_2%3a1.2.6-1_amd64.deb ... 339s Unpacking libsm6:amd64 (2:1.2.6-1) ... 339s Selecting previously unselected package libtcl8.6:amd64. 339s Preparing to unpack .../159-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 339s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 339s Selecting previously unselected package libxft2:amd64. 339s Preparing to unpack .../160-libxft2_2.3.6-1build2_amd64.deb ... 339s Unpacking libxft2:amd64 (2.3.6-1build2) ... 339s Selecting previously unselected package libxss1:amd64. 339s Preparing to unpack .../161-libxss1_1%3a1.2.3-1build4_amd64.deb ... 339s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 339s Selecting previously unselected package libtk8.6:amd64. 339s Preparing to unpack .../162-libtk8.6_8.6.17-1_amd64.deb ... 339s Unpacking libtk8.6:amd64 (8.6.17-1) ... 339s Selecting previously unselected package libudunits2-data. 339s Preparing to unpack .../163-libudunits2-data_2.2.28-8_all.deb ... 339s Unpacking libudunits2-data (2.2.28-8) ... 339s Selecting previously unselected package libudunits2-0:amd64. 339s Preparing to unpack .../164-libudunits2-0_2.2.28-8_amd64.deb ... 339s Unpacking libudunits2-0:amd64 (2.2.28-8) ... 339s Selecting previously unselected package libxt6t64:amd64. 339s Preparing to unpack .../165-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 339s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 339s Selecting previously unselected package libzstd-dev:amd64. 339s Preparing to unpack .../166-libzstd-dev_1.5.7+dfsg-2_amd64.deb ... 339s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-2) ... 339s Selecting previously unselected package node-bootstrap-sass. 339s Preparing to unpack .../167-node-bootstrap-sass_3.4.3-2_all.deb ... 339s Unpacking node-bootstrap-sass (3.4.3-2) ... 339s Selecting previously unselected package node-html5shiv. 339s Preparing to unpack .../168-node-html5shiv_3.7.3+dfsg-5_all.deb ... 339s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 339s Selecting previously unselected package node-normalize.css. 339s Preparing to unpack .../169-node-normalize.css_8.0.1-5.1_all.deb ... 339s Unpacking node-normalize.css (8.0.1-5.1) ... 339s Selecting previously unselected package pandoc-data. 339s Preparing to unpack .../170-pandoc-data_3.1.11.1-3build1_all.deb ... 339s Unpacking pandoc-data (3.1.11.1-3build1) ... 339s Selecting previously unselected package pandoc. 339s Preparing to unpack .../171-pandoc_3.1.11.1+ds-4_amd64.deb ... 339s Unpacking pandoc (3.1.11.1+ds-4) ... 339s Selecting previously unselected package zip. 339s Preparing to unpack .../172-zip_3.0-15ubuntu2_amd64.deb ... 339s Unpacking zip (3.0-15ubuntu2) ... 339s Selecting previously unselected package unzip. 339s Preparing to unpack .../173-unzip_6.0-29ubuntu1_amd64.deb ... 339s Unpacking unzip (6.0-29ubuntu1) ... 339s Selecting previously unselected package xdg-utils. 339s Preparing to unpack .../174-xdg-utils_1.2.1-2ubuntu2_all.deb ... 339s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 339s Selecting previously unselected package r-base-core. 339s Preparing to unpack .../175-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 339s Unpacking r-base-core (4.5.2-1ubuntu2) ... 340s Selecting previously unselected package liblzma-dev:amd64. 340s Preparing to unpack .../176-liblzma-dev_5.8.2-2_amd64.deb ... 340s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 340s Selecting previously unselected package pkgconf-bin. 340s Preparing to unpack .../177-pkgconf-bin_1.8.1-4build1_amd64.deb ... 340s Unpacking pkgconf-bin (1.8.1-4build1) ... 340s Selecting previously unselected package pkgconf:amd64. 340s Preparing to unpack .../178-pkgconf_1.8.1-4build1_amd64.deb ... 340s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 340s Selecting previously unselected package libtirpc-dev:amd64. 340s Preparing to unpack .../179-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 340s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 340s Selecting previously unselected package r-base-dev. 340s Preparing to unpack .../180-r-base-dev_4.5.2-1ubuntu2_all.deb ... 340s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 340s Selecting previously unselected package pkg-r-autopkgtest. 340s Preparing to unpack .../181-pkg-r-autopkgtest_20250812_all.deb ... 340s Unpacking pkg-r-autopkgtest (20250812) ... 340s Selecting previously unselected package r-cran-abind. 340s Preparing to unpack .../182-r-cran-abind_1.4-8-1build1_all.deb ... 340s Unpacking r-cran-abind (1.4-8-1build1) ... 340s Selecting previously unselected package r-cran-cli. 340s Preparing to unpack .../183-r-cran-cli_3.6.4-1_amd64.deb ... 340s Unpacking r-cran-cli (3.6.4-1) ... 340s Selecting previously unselected package r-cran-generics. 340s Preparing to unpack .../184-r-cran-generics_0.1.4-1_all.deb ... 340s Unpacking r-cran-generics (0.1.4-1) ... 340s Selecting previously unselected package r-cran-glue. 340s Preparing to unpack .../185-r-cran-glue_1.8.0-1_amd64.deb ... 340s Unpacking r-cran-glue (1.8.0-1) ... 340s Selecting previously unselected package r-cran-rlang. 340s Preparing to unpack .../186-r-cran-rlang_1.1.5-3_amd64.deb ... 340s Unpacking r-cran-rlang (1.1.5-3) ... 340s Selecting previously unselected package r-cran-lifecycle. 340s Preparing to unpack .../187-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 340s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 340s Selecting previously unselected package r-cran-magrittr. 340s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_amd64.deb ... 340s Unpacking r-cran-magrittr (2.0.3-1) ... 340s Selecting previously unselected package r-cran-utf8. 340s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_amd64.deb ... 340s Unpacking r-cran-utf8 (1.2.4-1) ... 340s Selecting previously unselected package r-cran-vctrs. 340s Preparing to unpack .../190-r-cran-vctrs_0.6.5-1_amd64.deb ... 340s Unpacking r-cran-vctrs (0.6.5-1) ... 340s Selecting previously unselected package r-cran-pillar. 340s Preparing to unpack .../191-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 340s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 340s Selecting previously unselected package r-cran-r6. 340s Preparing to unpack .../192-r-cran-r6_2.6.1-1_all.deb ... 340s Unpacking r-cran-r6 (2.6.1-1) ... 340s Selecting previously unselected package r-cran-fansi. 340s Preparing to unpack .../193-r-cran-fansi_1.0.6-2_amd64.deb ... 340s Unpacking r-cran-fansi (1.0.6-2) ... 340s Selecting previously unselected package r-cran-pkgconfig. 340s Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 340s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 340s Selecting previously unselected package r-cran-tibble. 340s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 340s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 340s Selecting previously unselected package r-cran-withr. 340s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 340s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 340s Selecting previously unselected package r-cran-tidyselect. 340s Preparing to unpack .../197-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 340s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 340s Selecting previously unselected package r-cran-dplyr. 340s Preparing to unpack .../198-r-cran-dplyr_1.1.4-4_amd64.deb ... 340s Unpacking r-cran-dplyr (1.1.4-4) ... 340s Selecting previously unselected package r-cran-purrr. 340s Preparing to unpack .../199-r-cran-purrr_1.0.4-1_amd64.deb ... 340s Unpacking r-cran-purrr (1.0.4-1) ... 340s Selecting previously unselected package r-cran-mass. 340s Preparing to unpack .../200-r-cran-mass_7.3-65-1_amd64.deb ... 340s Unpacking r-cran-mass (7.3-65-1) ... 340s Selecting previously unselected package r-cran-class. 340s Preparing to unpack .../201-r-cran-class_7.3-23-1_amd64.deb ... 340s Unpacking r-cran-class (7.3-23-1) ... 340s Selecting previously unselected package r-cran-proxy. 340s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_amd64.deb ... 340s Unpacking r-cran-proxy (0.4-27-1) ... 340s Selecting previously unselected package r-cran-e1071. 340s Preparing to unpack .../203-r-cran-e1071_1.7-17-1_amd64.deb ... 340s Unpacking r-cran-e1071 (1.7-17-1) ... 340s Selecting previously unselected package r-cran-kernsmooth. 340s Preparing to unpack .../204-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 340s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 340s Selecting previously unselected package r-cran-classint. 340s Preparing to unpack .../205-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 340s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 340s Selecting previously unselected package r-cran-dbi. 340s Preparing to unpack .../206-r-cran-dbi_1.2.3-1build1_all.deb ... 340s Unpacking r-cran-dbi (1.2.3-1build1) ... 340s Selecting previously unselected package r-cran-littler. 340s Preparing to unpack .../207-r-cran-littler_0.3.21-2_amd64.deb ... 340s Unpacking r-cran-littler (0.3.21-2) ... 340s Selecting previously unselected package r-cran-pkgkitten. 340s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ... 340s Unpacking r-cran-pkgkitten (0.2.4-1) ... 340s Selecting previously unselected package r-cran-rcpp. 340s Preparing to unpack .../209-r-cran-rcpp_1.1.0-1_amd64.deb ... 340s Unpacking r-cran-rcpp (1.1.0-1) ... 340s Selecting previously unselected package r-cran-wk. 340s Preparing to unpack .../210-r-cran-wk_0.9.4-1_amd64.deb ... 340s Unpacking r-cran-wk (0.9.4-1) ... 340s Selecting previously unselected package r-cran-s2. 340s Preparing to unpack .../211-r-cran-s2_1.1.9-1build1_amd64.deb ... 340s Unpacking r-cran-s2 (1.1.9-1build1) ... 340s Selecting previously unselected package r-cran-units. 340s Preparing to unpack .../212-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 340s Unpacking r-cran-units (0.8-7+dfsg-2) ... 340s Selecting previously unselected package r-cran-sf. 340s Preparing to unpack .../213-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 340s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 340s Selecting previously unselected package r-cran-areal. 340s Preparing to unpack .../214-r-cran-areal_0.1.8+dfsg-2_all.deb ... 340s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 340s Selecting previously unselected package r-cran-sys. 340s Preparing to unpack .../215-r-cran-sys_3.4.3-1_amd64.deb ... 340s Unpacking r-cran-sys (3.4.3-1) ... 340s Selecting previously unselected package r-cran-askpass. 340s Preparing to unpack .../216-r-cran-askpass_1.2.1-1_amd64.deb ... 340s Unpacking r-cran-askpass (1.2.1-1) ... 340s Selecting previously unselected package r-cran-base64enc. 340s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 340s Unpacking r-cran-base64enc (0.1-3-3build1) ... 340s Selecting previously unselected package r-cran-bdsmatrix. 340s Preparing to unpack .../218-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 340s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 340s Selecting previously unselected package r-cran-brio. 340s Preparing to unpack .../219-r-cran-brio_1.1.5-1_amd64.deb ... 340s Unpacking r-cran-brio (1.1.5-1) ... 340s Selecting previously unselected package r-cran-fastmap. 340s Preparing to unpack .../220-r-cran-fastmap_1.2.0-1_amd64.deb ... 340s Unpacking r-cran-fastmap (1.2.0-1) ... 340s Selecting previously unselected package r-cran-cachem. 340s Preparing to unpack .../221-r-cran-cachem_1.1.0-1_amd64.deb ... 340s Unpacking r-cran-cachem (1.1.0-1) ... 340s Selecting previously unselected package r-cran-digest. 340s Preparing to unpack .../222-r-cran-digest_0.6.39-1_amd64.deb ... 340s Unpacking r-cran-digest (0.6.39-1) ... 340s Selecting previously unselected package r-cran-htmltools. 340s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 340s Unpacking r-cran-htmltools (0.5.8.1-1) ... 340s Selecting previously unselected package r-cran-jquerylib. 340s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 340s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 340s Selecting previously unselected package r-cran-jsonlite. 340s Preparing to unpack .../225-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 340s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 340s Selecting previously unselected package r-cran-memoise. 340s Preparing to unpack .../226-r-cran-memoise_2.0.1-1build1_all.deb ... 340s Unpacking r-cran-memoise (2.0.1-1build1) ... 340s Selecting previously unselected package r-cran-mime. 340s Preparing to unpack .../227-r-cran-mime_0.12-2_amd64.deb ... 340s Unpacking r-cran-mime (0.12-2) ... 340s Selecting previously unselected package r-cran-fs. 341s Preparing to unpack .../228-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 341s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 341s Selecting previously unselected package r-cran-rappdirs. 341s Preparing to unpack .../229-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 341s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 341s Selecting previously unselected package r-cran-sass. 341s Preparing to unpack .../230-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 341s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 341s Selecting previously unselected package r-cran-bslib. 341s Preparing to unpack .../231-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 341s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 341s Selecting previously unselected package r-cran-cairo. 341s Preparing to unpack .../232-r-cran-cairo_1.6-2-1_amd64.deb ... 341s Unpacking r-cran-cairo (1.6-2-1) ... 341s Selecting previously unselected package r-cran-ps. 341s Preparing to unpack .../233-r-cran-ps_1.9.0-1_amd64.deb ... 341s Unpacking r-cran-ps (1.9.0-1) ... 341s Selecting previously unselected package r-cran-processx. 341s Preparing to unpack .../234-r-cran-processx_3.8.6-1_amd64.deb ... 341s Unpacking r-cran-processx (3.8.6-1) ... 341s Selecting previously unselected package r-cran-callr. 341s Preparing to unpack .../235-r-cran-callr_3.7.6-1_all.deb ... 341s Unpacking r-cran-callr (3.7.6-1) ... 341s Selecting previously unselected package r-cran-cftime. 341s Preparing to unpack .../236-r-cran-cftime_1.7.2-1_all.deb ... 341s Unpacking r-cran-cftime (1.7.2-1) ... 341s Selecting previously unselected package r-cran-cluster. 341s Preparing to unpack .../237-r-cran-cluster_2.1.8.1-1_amd64.deb ... 341s Unpacking r-cran-cluster (2.1.8.1-1) ... 341s Selecting previously unselected package r-cran-clue. 341s Preparing to unpack .../238-r-cran-clue_0.3-66-1_amd64.deb ... 341s Unpacking r-cran-clue (0.3-66-1) ... 341s Selecting previously unselected package r-cran-codetools. 341s Preparing to unpack .../239-r-cran-codetools_0.2-20-1build1_all.deb ... 341s Unpacking r-cran-codetools (0.2-20-1build1) ... 341s Selecting previously unselected package r-cran-collapse. 341s Preparing to unpack .../240-r-cran-collapse_2.1.0-1_amd64.deb ... 341s Unpacking r-cran-collapse (2.1.0-1) ... 341s Selecting previously unselected package r-cran-commonmark. 341s Preparing to unpack .../241-r-cran-commonmark_1.9.5-1_amd64.deb ... 341s Unpacking r-cran-commonmark (1.9.5-1) ... 341s Selecting previously unselected package r-cran-lazyeval. 341s Preparing to unpack .../242-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 341s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 341s Selecting previously unselected package r-cran-rex. 341s Preparing to unpack .../243-r-cran-rex_1.2.1-1build1_all.deb ... 341s Unpacking r-cran-rex (1.2.1-1build1) ... 341s Selecting previously unselected package r-cran-curl. 341s Preparing to unpack .../244-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 341s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 341s Selecting previously unselected package r-cran-openssl. 341s Preparing to unpack .../245-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 341s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 341s Selecting previously unselected package r-cran-httr. 341s Preparing to unpack .../246-r-cran-httr_1.4.7+dfsg-1_all.deb ... 341s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 341s Selecting previously unselected package r-cran-crayon. 341s Preparing to unpack .../247-r-cran-crayon_1.5.3-1_all.deb ... 341s Unpacking r-cran-crayon (1.5.3-1) ... 341s Selecting previously unselected package r-cran-yaml. 341s Preparing to unpack .../248-r-cran-yaml_2.3.10-1_amd64.deb ... 341s Unpacking r-cran-yaml (2.3.10-1) ... 341s Selecting previously unselected package r-cran-covr. 341s Preparing to unpack .../249-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 341s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 341s Selecting previously unselected package r-cran-cpp11. 341s Preparing to unpack .../250-r-cran-cpp11_0.5.3-1_all.deb ... 341s Unpacking r-cran-cpp11 (0.5.3-1) ... 341s Selecting previously unselected package r-cran-deldir. 341s Preparing to unpack .../251-r-cran-deldir_2.0-4-1build1_amd64.deb ... 341s Unpacking r-cran-deldir (2.0-4-1build1) ... 341s Selecting previously unselected package r-cran-desc. 341s Preparing to unpack .../252-r-cran-desc_1.4.3-1_all.deb ... 341s Unpacking r-cran-desc (1.4.3-1) ... 341s Selecting previously unselected package r-cran-diffobj. 341s Preparing to unpack .../253-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 341s Unpacking r-cran-diffobj (0.3.5-1build1) ... 341s Selecting previously unselected package r-cran-evaluate. 341s Preparing to unpack .../254-r-cran-evaluate_1.0.3-1_all.deb ... 341s Unpacking r-cran-evaluate (1.0.3-1) ... 341s Selecting previously unselected package r-cran-farver. 341s Preparing to unpack .../255-r-cran-farver_2.1.2-1_amd64.deb ... 341s Unpacking r-cran-farver (2.1.2-1) ... 341s Selecting previously unselected package r-cran-fnn. 341s Preparing to unpack .../256-r-cran-fnn_1.1.4.1-1_amd64.deb ... 341s Unpacking r-cran-fnn (1.1.4.1-1) ... 341s Selecting previously unselected package r-cran-fontawesome. 341s Preparing to unpack .../257-r-cran-fontawesome_0.5.3-1_all.deb ... 341s Unpacking r-cran-fontawesome (0.5.3-1) ... 341s Selecting previously unselected package r-cran-formula. 341s Preparing to unpack .../258-r-cran-formula_1.2-5-1_all.deb ... 341s Unpacking r-cran-formula (1.2-5-1) ... 341s Selecting previously unselected package r-cran-globals. 341s Preparing to unpack .../259-r-cran-globals_0.18.0-1_all.deb ... 341s Unpacking r-cran-globals (0.18.0-1) ... 341s Selecting previously unselected package r-cran-listenv. 341s Preparing to unpack .../260-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 341s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 341s Selecting previously unselected package r-cran-parallelly. 341s Preparing to unpack .../261-r-cran-parallelly_1.42.0-1_amd64.deb ... 341s Unpacking r-cran-parallelly (1.42.0-1) ... 341s Selecting previously unselected package r-cran-future. 341s Preparing to unpack .../262-r-cran-future_1.34.0+dfsg-1_all.deb ... 341s Unpacking r-cran-future (1.34.0+dfsg-1) ... 341s Selecting previously unselected package r-cran-future.apply. 341s Preparing to unpack .../263-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 341s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 341s Selecting previously unselected package r-cran-gtable. 341s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 341s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 341s Selecting previously unselected package r-cran-isoband. 341s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 341s Unpacking r-cran-isoband (0.2.7-1) ... 341s Selecting previously unselected package r-cran-lattice. 341s Preparing to unpack .../266-r-cran-lattice_0.22-7-1_amd64.deb ... 341s Unpacking r-cran-lattice (0.22-7-1) ... 341s Selecting previously unselected package r-cran-nlme. 341s Preparing to unpack .../267-r-cran-nlme_3.1.168-1_amd64.deb ... 341s Unpacking r-cran-nlme (3.1.168-1) ... 341s Selecting previously unselected package r-cran-matrix. 341s Preparing to unpack .../268-r-cran-matrix_1.7-4-1_amd64.deb ... 341s Unpacking r-cran-matrix (1.7-4-1) ... 341s Selecting previously unselected package r-cran-mgcv. 341s Preparing to unpack .../269-r-cran-mgcv_1.9-4-1_amd64.deb ... 341s Unpacking r-cran-mgcv (1.9-4-1) ... 341s Selecting previously unselected package r-cran-labeling. 341s Preparing to unpack .../270-r-cran-labeling_0.4.3-1_all.deb ... 341s Unpacking r-cran-labeling (0.4.3-1) ... 341s Selecting previously unselected package r-cran-rcolorbrewer. 341s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 341s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 341s Selecting previously unselected package r-cran-viridislite. 341s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 341s Unpacking r-cran-viridislite (0.4.2-2) ... 341s Selecting previously unselected package r-cran-scales. 341s Preparing to unpack .../273-r-cran-scales_1.4.0-1_all.deb ... 341s Unpacking r-cran-scales (1.4.0-1) ... 341s Selecting previously unselected package r-cran-ggplot2. 341s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 341s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 342s Selecting previously unselected package r-cran-tweenr. 342s Preparing to unpack .../275-r-cran-tweenr_2.0.3-1_amd64.deb ... 342s Unpacking r-cran-tweenr (2.0.3-1) ... 342s Selecting previously unselected package r-cran-polyclip. 342s Preparing to unpack .../276-r-cran-polyclip_1.10-7-1_amd64.deb ... 342s Unpacking r-cran-polyclip (1.10-7-1) ... 342s Selecting previously unselected package r-cran-systemfonts. 342s Preparing to unpack .../277-r-cran-systemfonts_1.2.1-1_amd64.deb ... 342s Unpacking r-cran-systemfonts (1.2.1-1) ... 342s Selecting previously unselected package r-cran-rcppeigen. 342s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 342s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 342s Selecting previously unselected package r-cran-ggforce. 342s Preparing to unpack .../279-r-cran-ggforce_0.4.2-1_amd64.deb ... 342s Unpacking r-cran-ggforce (0.4.2-1) ... 342s Selecting previously unselected package r-cran-stringi. 342s Preparing to unpack .../280-r-cran-stringi_1.8.4-1build2_amd64.deb ... 342s Unpacking r-cran-stringi (1.8.4-1build2) ... 342s Selecting previously unselected package r-cran-stringr. 342s Preparing to unpack .../281-r-cran-stringr_1.5.1-1_all.deb ... 342s Unpacking r-cran-stringr (1.5.1-1) ... 342s Selecting previously unselected package r-cran-ggthemes. 342s Preparing to unpack .../282-r-cran-ggthemes_5.2.0-1_all.deb ... 342s Unpacking r-cran-ggthemes (5.2.0-1) ... 342s Selecting previously unselected package r-cran-goftest. 342s Preparing to unpack .../283-r-cran-goftest_1.2-3-1build1_amd64.deb ... 342s Unpacking r-cran-goftest (1.2-3-1build1) ... 342s Selecting previously unselected package r-cran-gridextra. 342s Preparing to unpack .../284-r-cran-gridextra_2.3-3build2_all.deb ... 342s Unpacking r-cran-gridextra (2.3-3build2) ... 342s Selecting previously unselected package r-cran-xfun. 342s Preparing to unpack .../285-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 342s Unpacking r-cran-xfun (0.55+dfsg-1) ... 342s Selecting previously unselected package r-cran-highr. 342s Preparing to unpack .../286-r-cran-highr_0.11+dfsg-1_all.deb ... 342s Unpacking r-cran-highr (0.11+dfsg-1) ... 342s Selecting previously unselected package r-cran-later. 342s Preparing to unpack .../287-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 342s Unpacking r-cran-later (1.4.1+dfsg-1) ... 342s Selecting previously unselected package r-cran-promises. 342s Preparing to unpack .../288-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 342s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 342s Selecting previously unselected package r-cran-httpuv. 342s Preparing to unpack .../289-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 342s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 342s Selecting previously unselected package r-cran-intervals. 342s Preparing to unpack .../290-r-cran-intervals_0.15.5-1_amd64.deb ... 342s Unpacking r-cran-intervals (0.15.5-1) ... 342s Selecting previously unselected package libjs-mathjax. 342s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 342s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 342s Selecting previously unselected package r-cran-knitr. 342s Preparing to unpack .../292-r-cran-knitr_1.51+dfsg-1_all.deb ... 342s Unpacking r-cran-knitr (1.51+dfsg-1) ... 342s Selecting previously unselected package r-cran-zoo. 342s Preparing to unpack .../293-r-cran-zoo_1.8-15-1_amd64.deb ... 342s Unpacking r-cran-zoo (1.8-15-1) ... 342s Selecting previously unselected package r-cran-lmtest. 342s Preparing to unpack .../294-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 342s Unpacking r-cran-lmtest (0.9.40-1build1) ... 342s Selecting previously unselected package r-cran-lwgeom. 342s Preparing to unpack .../295-r-cran-lwgeom_0.2-14-1_amd64.deb ... 342s Unpacking r-cran-lwgeom (0.2-14-1) ... 342s Selecting previously unselected package r-cran-maps. 342s Preparing to unpack .../296-r-cran-maps_3.4.2.1-1_amd64.deb ... 342s Unpacking r-cran-maps (3.4.2.1-1) ... 342s Selecting previously unselected package r-cran-mapdata. 342s Preparing to unpack .../297-r-cran-mapdata_2.3.1-1_amd64.deb ... 342s Unpacking r-cran-mapdata (2.3.1-1) ... 342s Selecting previously unselected package r-cran-misctools. 342s Preparing to unpack .../298-r-cran-misctools_0.6-28-1_all.deb ... 342s Unpacking r-cran-misctools (0.6-28-1) ... 342s Selecting previously unselected package r-cran-sandwich. 342s Preparing to unpack .../299-r-cran-sandwich_3.1-1-1_all.deb ... 342s Unpacking r-cran-sandwich (3.1-1-1) ... 342s Selecting previously unselected package r-cran-maxlik. 342s Preparing to unpack .../300-r-cran-maxlik_1.5-2.2-1_all.deb ... 342s Unpacking r-cran-maxlik (1.5-2.2-1) ... 342s Selecting previously unselected package r-cran-rnetcdf. 342s Preparing to unpack .../301-r-cran-rnetcdf_2.11-1-1_amd64.deb ... 342s Unpacking r-cran-rnetcdf (2.11-1-1) ... 342s Selecting previously unselected package r-cran-tidyr. 342s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_amd64.deb ... 342s Unpacking r-cran-tidyr (1.3.1-1) ... 343s Selecting previously unselected package r-cran-ncmeta. 343s Preparing to unpack .../303-r-cran-ncmeta_0.4.0-1_all.deb ... 343s Unpacking r-cran-ncmeta (0.4.0-1) ... 343s Selecting previously unselected package r-cran-stars. 343s Preparing to unpack .../304-r-cran-stars_0.6-8-1_all.deb ... 343s Unpacking r-cran-stars (0.6-8-1) ... 343s Selecting previously unselected package r-cran-ncdfgeom. 343s Preparing to unpack .../305-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 343s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 343s Selecting previously unselected package r-cran-pbapply. 343s Preparing to unpack .../306-r-cran-pbapply_1.7-2-1_all.deb ... 343s Unpacking r-cran-pbapply (1.7-2-1) ... 343s Selecting previously unselected package r-cran-pcict. 343s Preparing to unpack .../307-r-cran-pcict_0.5-4.4-1_amd64.deb ... 343s Unpacking r-cran-pcict (0.5-4.4-1) ... 343s Selecting previously unselected package r-cran-pkgbuild. 343s Preparing to unpack .../308-r-cran-pkgbuild_1.4.8-1_all.deb ... 343s Unpacking r-cran-pkgbuild (1.4.8-1) ... 343s Selecting previously unselected package r-cran-rprojroot. 343s Preparing to unpack .../309-r-cran-rprojroot_2.1.1-1_all.deb ... 343s Unpacking r-cran-rprojroot (2.1.1-1) ... 343s Selecting previously unselected package r-cran-pkgload. 343s Preparing to unpack .../310-r-cran-pkgload_1.4.1-1_all.deb ... 343s Unpacking r-cran-pkgload (1.4.1-1) ... 343s Selecting previously unselected package r-cran-rbibutils. 343s Preparing to unpack .../311-r-cran-rbibutils_2.3-1_amd64.deb ... 343s Unpacking r-cran-rbibutils (2.3-1) ... 343s Selecting previously unselected package r-cran-rdpack. 343s Preparing to unpack .../312-r-cran-rdpack_2.6.3-1_all.deb ... 343s Unpacking r-cran-rdpack (2.6.3-1) ... 343s Selecting previously unselected package r-cran-plm. 343s Preparing to unpack .../313-r-cran-plm_2.6-7-1_all.deb ... 343s Unpacking r-cran-plm (2.6-7-1) ... 343s Selecting previously unselected package r-cran-praise. 343s Preparing to unpack .../314-r-cran-praise_1.0.0-4build2_all.deb ... 343s Unpacking r-cran-praise (1.0.0-4build2) ... 343s Selecting previously unselected package r-cran-randomforest. 343s Preparing to unpack .../315-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 343s Unpacking r-cran-randomforest (4.7-1.2-1) ... 343s Selecting previously unselected package r-cran-sp. 343s Preparing to unpack .../316-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 343s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 343s Selecting previously unselected package r-cran-terra. 343s Preparing to unpack .../317-r-cran-terra_1.8-70-1build2_amd64.deb ... 343s Unpacking r-cran-terra (1.8-70-1build2) ... 343s Selecting previously unselected package r-cran-raster. 343s Preparing to unpack .../318-r-cran-raster_3.6-31-2_amd64.deb ... 343s Unpacking r-cran-raster (3.6-31-2) ... 343s Selecting previously unselected package r-cran-tinytex. 343s Preparing to unpack .../319-r-cran-tinytex_0.58-1_all.deb ... 343s Unpacking r-cran-tinytex (0.58-1) ... 343s Selecting previously unselected package libjs-modernizr. 343s Preparing to unpack .../320-libjs-modernizr_3.13.0-0.1build1_all.deb ... 343s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 343s Selecting previously unselected package r-cran-xtable. 343s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 343s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 343s Selecting previously unselected package r-cran-sourcetools. 343s Preparing to unpack .../322-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 343s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 343s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 343s Preparing to unpack .../323-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 343s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 343s Selecting previously unselected package r-cran-shiny. 343s Preparing to unpack .../324-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 343s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 343s Selecting previously unselected package r-cran-rmarkdown. 343s Preparing to unpack .../325-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 343s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 343s Selecting previously unselected package r-cran-survival. 343s Preparing to unpack .../326-r-cran-survival_3.8-6-1_amd64.deb ... 343s Unpacking r-cran-survival (3.8-6-1) ... 343s Selecting previously unselected package r-cran-rpart. 343s Preparing to unpack .../327-r-cran-rpart_4.1.24-1_amd64.deb ... 343s Unpacking r-cran-rpart (4.1.24-1) ... 343s Selecting previously unselected package r-cran-xts. 343s Preparing to unpack .../328-r-cran-xts_0.14.1-1_amd64.deb ... 343s Unpacking r-cran-xts (0.14.1-1) ... 343s Selecting previously unselected package r-cran-spacetime. 343s Preparing to unpack .../329-r-cran-spacetime_1.3-3-2_all.deb ... 343s Unpacking r-cran-spacetime (1.3-3-2) ... 343s Selecting previously unselected package r-cran-spatstat.utils. 343s Preparing to unpack .../330-r-cran-spatstat.utils_3.1-3-1_amd64.deb ... 343s Unpacking r-cran-spatstat.utils (3.1-3-1) ... 343s Selecting previously unselected package r-cran-spatstat.data. 343s Preparing to unpack .../331-r-cran-spatstat.data_3.1-6-1_all.deb ... 343s Unpacking r-cran-spatstat.data (3.1-6-1) ... 343s Selecting previously unselected package r-cran-spatstat.univar. 343s Preparing to unpack .../332-r-cran-spatstat.univar_3.1-2-1_amd64.deb ... 343s Unpacking r-cran-spatstat.univar (3.1-2-1) ... 343s Selecting previously unselected package r-cran-spatstat.geom. 343s Preparing to unpack .../333-r-cran-spatstat.geom_3.3-6-1_amd64.deb ... 343s Unpacking r-cran-spatstat.geom (3.3-6-1) ... 343s Selecting previously unselected package r-cran-spatstat.random. 343s Preparing to unpack .../334-r-cran-spatstat.random_3.3-3-1_amd64.deb ... 343s Unpacking r-cran-spatstat.random (3.3-3-1) ... 343s Selecting previously unselected package r-cran-tensor. 343s Preparing to unpack .../335-r-cran-tensor_1.5-4build1_all.deb ... 343s Unpacking r-cran-tensor (1.5-4build1) ... 343s Selecting previously unselected package r-cran-spatstat.sparse. 343s Preparing to unpack .../336-r-cran-spatstat.sparse_3.1-0-1_amd64.deb ... 343s Unpacking r-cran-spatstat.sparse (3.1-0-1) ... 343s Selecting previously unselected package r-cran-spatstat.explore. 343s Preparing to unpack .../337-r-cran-spatstat.explore_3.3-4-1_amd64.deb ... 343s Unpacking r-cran-spatstat.explore (3.3-4-1) ... 343s Selecting previously unselected package r-cran-spatstat.model. 343s Preparing to unpack .../338-r-cran-spatstat.model_3.3-4-1_amd64.deb ... 343s Unpacking r-cran-spatstat.model (3.3-4-1) ... 343s Selecting previously unselected package r-cran-spatstat.linnet. 343s Preparing to unpack .../339-r-cran-spatstat.linnet_3.2-5-1_amd64.deb ... 343s Unpacking r-cran-spatstat.linnet (3.2-5-1) ... 343s Selecting previously unselected package r-cran-spatstat. 343s Preparing to unpack .../340-r-cran-spatstat_3.3-1-1_amd64.deb ... 343s Unpacking r-cran-spatstat (3.3-1-1) ... 343s Selecting previously unselected package r-cran-waldo. 343s Preparing to unpack .../341-r-cran-waldo_0.6.2-1_all.deb ... 343s Unpacking r-cran-waldo (0.6.2-1) ... 343s Selecting previously unselected package r-cran-testthat. 343s Preparing to unpack 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Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 346s Setting up r-cran-stars (0.6-8-1) ... 346s Setting up r-cran-areal (0.1.8+dfsg-2) ... 346s Setting up r-cran-raster (3.6-31-2) ... 346s Setting up r-cran-lwgeom (0.2-14-1) ... 346s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 346s Processing triggers for libc-bin (2.42-2ubuntu4) ... 346s Processing triggers for man-db (2.13.1-1) ... 347s Processing triggers for install-info (7.2-5) ... 349s autopkgtest [07:58:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 349s autopkgtest [07:58:57]: test pkg-r-autopkgtest: [----------------------- 349s Test: Try to load the R library stars 349s 349s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 349s Copyright (C) 2025 The R Foundation for Statistical Computing 349s Platform: x86_64-pc-linux-gnu 349s 349s R is free software and comes with ABSOLUTELY NO WARRANTY. 349s You are welcome to redistribute it under certain conditions. 349s Type 'license()' or 'licence()' for distribution details. 349s 349s R is a collaborative project with many contributors. 349s Type 'contributors()' for more information and 349s 'citation()' on how to cite R or R packages in publications. 349s 349s Type 'demo()' for some demos, 'help()' for on-line help, or 349s 'help.start()' for an HTML browser interface to help. 349s Type 'q()' to quit R. 349s 349s > library('stars') 349s Loading required package: abind 349s Loading required package: sf 350s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 350s > 350s autopkgtest [07:58:58]: test pkg-r-autopkgtest: -----------------------] 350s pkg-r-autopkgtest PASS 350s autopkgtest [07:58:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 351s autopkgtest [07:58:59]: @@@@@@@@@@@@@@@@@@@@ summary 351s run-unit-test PASS 351s pkg-r-autopkgtest PASS