0s autopkgtest [19:24:35]: starting date and time: 2026-01-29 19:24:35+0000 0s autopkgtest [19:24:35]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [19:24:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1gdp8gq1/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-raster --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-raster/3.6-32-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-11.secgroup --name adt-resolute-amd64-r-cran-stars-20260129-192435-juju-7f2275-prod-proposed-migration-environment-2-4a9559a4-7110-411a-8ea8-9c409067b27f --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 6s Creating nova instance adt-resolute-amd64-r-cran-stars-20260129-192435-juju-7f2275-prod-proposed-migration-environment-2-4a9559a4-7110-411a-8ea8-9c409067b27f from image adt/ubuntu-resolute-amd64-server-20260129.img (UUID c052dd91-e629-41e8-9bf0-bad94c4bd713)... 78s autopkgtest [19:25:53]: testbed dpkg architecture: amd64 78s autopkgtest [19:25:53]: testbed apt version: 3.1.14 78s autopkgtest [19:25:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 79s autopkgtest [19:25:54]: testbed release detected to be: None 79s autopkgtest [19:25:54]: updating testbed package index (apt update) 80s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [102 kB] 80s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 80s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.4 kB] 80s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1036 kB] 80s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [119 kB] 80s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [103 kB] 80s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4404 B] 80s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 80s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 80s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 80s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [834 kB] 80s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [335 kB] 80s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.5 kB] 80s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [23.2 kB] 80s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3336 B] 80s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1036 B] 81s Fetched 2752 kB in 1s (3174 kB/s) 81s Reading package lists... 82s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 82s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 83s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 83s The following packages will be upgraded: 83s gcc-15-base libatomic1 libgcc-s1 libsgutils2-1.48 libstdc++6 sg3-utils 83s sg3-utils-udev 83s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 2108 kB of archives. 83s After this operation, 1024 B of additional disk space will be used. 83s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 15.2.0-12ubuntu1 [10.5 kB] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 15.2.0-12ubuntu1 [813 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-base amd64 15.2.0-12ubuntu1 [59.6 kB] 83s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 15.2.0-12ubuntu1 [78.0 kB] 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libsgutils2-1.48 amd64 1.48-3ubuntu2 [120 kB] 83s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 sg3-utils amd64 1.48-3ubuntu2 [1020 kB] 83s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 sg3-utils-udev all 1.48-3ubuntu2 [6610 B] 84s dpkg-preconfigure: unable to re-open stdin: No such file or directory 84s Fetched 2108 kB in 0s (7660 kB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 84s Preparing to unpack .../libatomic1_15.2.0-12ubuntu1_amd64.deb ... 84s Unpacking libatomic1:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 84s Preparing to unpack .../libstdc++6_15.2.0-12ubuntu1_amd64.deb ... 84s Unpacking libstdc++6:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 84s Preparing to unpack .../gcc-15-base_15.2.0-12ubuntu1_amd64.deb ... 84s Unpacking gcc-15-base:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 84s Setting up gcc-15-base:amd64 (15.2.0-12ubuntu1) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 84s Preparing to unpack .../libgcc-s1_15.2.0-12ubuntu1_amd64.deb ... 84s Unpacking libgcc-s1:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 84s Setting up libgcc-s1:amd64 (15.2.0-12ubuntu1) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 84s Preparing to unpack .../libsgutils2-1.48_1.48-3ubuntu2_amd64.deb ... 84s Unpacking libsgutils2-1.48:amd64 (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 84s Preparing to unpack .../sg3-utils_1.48-3ubuntu2_amd64.deb ... 84s Unpacking sg3-utils (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 84s Preparing to unpack .../sg3-utils-udev_1.48-3ubuntu2_all.deb ... 84s Unpacking sg3-utils-udev (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 84s Setting up libsgutils2-1.48:amd64 (1.48-3ubuntu2) ... 84s Setting up libatomic1:amd64 (15.2.0-12ubuntu1) ... 84s Setting up libstdc++6:amd64 (15.2.0-12ubuntu1) ... 84s Setting up sg3-utils (1.48-3ubuntu2) ... 84s Setting up sg3-utils-udev (1.48-3ubuntu2) ... 84s update-initramfs: deferring update (trigger activated) 84s Processing triggers for libc-bin (2.42-2ubuntu4) ... 84s Processing triggers for man-db (2.13.1-1) ... 85s Processing triggers for initramfs-tools (0.150ubuntu7) ... 85s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 89s autopkgtest [19:26:04]: upgrading testbed (apt dist-upgrade and autopurge) 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Solving dependencies... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s autopkgtest [19:26:06]: rebooting testbed after setup commands that affected boot 119s autopkgtest [19:26:34]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 121s autopkgtest [19:26:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 123s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (dsc) [2749 B] 123s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (tar) [4038 kB] 123s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (diff) [4400 B] 123s gpgv: Signature made Wed Feb 19 23:48:57 2025 UTC 123s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 123s gpgv: issuer "plessy@debian.org" 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-8-1.dsc: no acceptable signature found 123s autopkgtest [19:26:38]: testing package r-cran-stars version 0.6-8-1 124s autopkgtest [19:26:39]: build not needed 127s autopkgtest [19:26:42]: test run-unit-test: preparing testbed 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Solving dependencies... 128s The following NEW packages will be installed: 128s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 128s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 128s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 128s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 128s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 128s libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 128s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 128s libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 128s libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8 128s libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 128s libjs-highlight.js libjs-jquery libjs-jquery-datatables 128s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 128s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 128s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 128s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 128s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 128s libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 128s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 128s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 128s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 128s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 128s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 128s libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 128s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 128s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 128s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cftime 128s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 128s r-cran-codetools r-cran-collapse r-cran-commonmark r-cran-covr r-cran-cpp11 128s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 128s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 128s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 128s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 128s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 128s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 128s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 128s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 128s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 128s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 128s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 128s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 128s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta 128s r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict 128s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 128s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 128s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 128s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 128s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 128s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 128s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 128s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 128s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 128s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 128s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 128s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 128s r-cran-systemfonts r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble 128s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tweenr r-cran-units 128s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 128s r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml 128s r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 128s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 128s Need to get 297 MB of archives. 128s After this operation, 779 MB of additional disk space will be used. 128s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 128s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 128s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 128s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 128s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 129s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 129s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 129s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 129s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 129s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 129s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 129s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 129s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 129s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 129s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 129s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 130s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 130s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 130s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 130s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 130s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 130s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 130s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 130s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 130s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 130s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 130s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 130s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 130s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 130s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 130s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 130s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 130s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 130s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 130s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 130s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 130s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 130s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 130s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 130s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 130s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 130s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 130s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 131s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 131s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 131s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 131s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 131s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 131s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 132s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 132s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 132s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 132s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 132s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 132s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 132s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 132s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 132s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 132s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 132s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 132s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 132s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 132s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 132s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 132s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 132s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 132s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 132s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 133s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 133s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 133s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 133s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 133s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 133s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 133s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 133s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 133s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 133s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 133s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 133s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 133s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 133s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 134s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 135s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 135s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 135s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 135s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 135s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 135s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 135s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 135s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 135s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 135s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 135s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 135s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 135s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 135s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 135s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 135s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 135s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 135s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 135s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 135s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 135s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 135s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 135s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 135s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 135s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 135s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 135s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 135s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 136s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 136s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 136s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 136s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 136s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 136s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 136s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 136s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 136s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 136s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 136s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 139s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 139s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 139s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 139s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 143s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 143s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 143s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 143s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 143s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 143s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 143s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 143s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 143s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 143s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 143s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 143s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 143s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 143s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 144s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 144s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 144s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 144s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 144s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 144s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 144s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 144s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 144s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 144s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 144s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 144s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 144s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 144s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 144s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 145s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 145s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 145s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 145s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 145s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 145s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 145s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 145s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 145s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 145s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 145s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 145s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 145s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 145s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 145s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 145s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 145s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 145s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 145s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 145s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 146s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 146s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 146s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 146s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 146s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 146s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 146s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 146s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 146s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 146s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 147s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 147s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 147s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 147s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 147s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 147s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 147s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 147s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 147s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 147s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 147s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 147s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 147s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 147s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 147s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 147s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 147s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 147s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 148s Get:204 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-raster amd64 3.6-32-1 [3186 kB] 148s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-exactextractr amd64 0.10.0-1build2 [578 kB] 148s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 148s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 148s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 149s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 149s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 149s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 149s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 149s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 149s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 149s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 149s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 149s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 149s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 150s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 151s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 151s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 151s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 151s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 151s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 152s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 152s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 152s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 152s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 152s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 153s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 153s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 153s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 153s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 153s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 154s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 154s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 154s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 154s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 155s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 156s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 158s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 159s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 159s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 159s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 159s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 159s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 159s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 161s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 161s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 161s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 161s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 162s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 167s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 168s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 168s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 168s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rnetcdf amd64 2.9-2-1 [254 kB] 168s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 169s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 169s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 170s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 170s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 170s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 170s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 170s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 170s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 170s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 170s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 171s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 171s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 171s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 171s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 171s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 171s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 171s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 171s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 172s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 173s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 175s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 175s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 175s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 177s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 177s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 178s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 178s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 178s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 178s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 180s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 181s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 181s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 182s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 182s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 183s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 184s Preconfiguring packages ... 184s Fetched 297 MB in 56s (5300 kB/s) 184s Selecting previously unselected package fonts-dejavu-mono. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 185s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 185s Unpacking fonts-dejavu-mono (2.37-8build1) ... 185s Selecting previously unselected package fonts-dejavu-core. 185s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 185s Unpacking fonts-dejavu-core (2.37-8build1) ... 185s Selecting previously unselected package fontconfig-config. 185s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 185s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 185s Selecting previously unselected package libfontconfig1:amd64. 185s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 185s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 185s Selecting previously unselected package fontconfig. 185s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 185s Unpacking fontconfig (2.17.1-3ubuntu1) ... 185s Selecting previously unselected package fonts-font-awesome. 185s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 185s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 185s Selecting previously unselected package fonts-glyphicons-halflings. 185s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 185s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 185s Selecting previously unselected package fonts-mathjax. 185s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 185s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 185s Selecting previously unselected package gdal-data. 185s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ... 185s Unpacking gdal-data (3.12.1+dfsg-1) ... 185s Selecting previously unselected package gdal-plugins:amd64. 185s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 185s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 185s Selecting previously unselected package javascript-common. 185s Preparing to unpack .../010-javascript-common_12+nmu1_all.deb ... 185s Unpacking javascript-common (12+nmu1) ... 185s Selecting previously unselected package libabsl20260107:amd64. 185s Preparing to unpack .../011-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 185s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 185s Selecting previously unselected package libaec0:amd64. 185s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ... 185s Unpacking libaec0:amd64 (1.1.5-1) ... 185s Selecting previously unselected package libaom3:amd64. 185s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ... 185s Unpacking libaom3:amd64 (3.13.1-2) ... 185s Selecting previously unselected package libblas3:amd64. 185s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ... 185s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 185s Selecting previously unselected package libgfortran5:amd64. 185s Preparing to unpack .../015-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 185s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 185s Selecting previously unselected package liblapack3:amd64. 185s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 185s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 185s Selecting previously unselected package libarpack2t64:amd64. 185s Preparing to unpack .../017-libarpack2t64_3.9.1-6_amd64.deb ... 185s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 185s Selecting previously unselected package libsuperlu7:amd64. 185s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 185s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 185s Selecting previously unselected package libarmadillo15. 185s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 185s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 185s Selecting previously unselected package libdav1d7:amd64. 185s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ... 185s Unpacking libdav1d7:amd64 (1.5.3-1) ... 185s Selecting previously unselected package libgav1-2:amd64. 185s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ... 185s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 185s Selecting previously unselected package libjpeg-turbo8:amd64. 185s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 185s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 185s Selecting previously unselected package libjpeg8:amd64. 185s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_amd64.deb ... 185s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 185s Selecting previously unselected package libyuv0:amd64. 185s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ... 185s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 185s Selecting previously unselected package libavif16:amd64. 185s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ... 185s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 185s Selecting previously unselected package libsnappy1v5:amd64. 185s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ... 185s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 185s Selecting previously unselected package libblosc1:amd64. 185s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ... 185s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 185s Selecting previously unselected package libpixman-1-0:amd64. 185s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ... 185s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 185s Selecting previously unselected package libxcb-render0:amd64. 185s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 185s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 185s Selecting previously unselected package libxcb-shm0:amd64. 185s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 185s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 185s Selecting previously unselected package libxrender1:amd64. 185s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_amd64.deb ... 185s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 185s Selecting previously unselected package libcairo2:amd64. 185s Preparing to unpack .../032-libcairo2_1.18.4-3_amd64.deb ... 185s Unpacking libcairo2:amd64 (1.18.4-3) ... 185s Selecting previously unselected package libcfitsio10t64:amd64. 185s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_amd64.deb ... 185s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 185s Selecting previously unselected package libdatrie1:amd64. 185s Preparing to unpack .../034-libdatrie1_0.2.14-1_amd64.deb ... 185s Unpacking libdatrie1:amd64 (0.2.14-1) ... 185s Selecting previously unselected package libde265-0:amd64. 185s Preparing to unpack .../035-libde265-0_1.0.16-1build1_amd64.deb ... 185s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 185s Selecting previously unselected package libdeflate0:amd64. 185s Preparing to unpack .../036-libdeflate0_1.23-2_amd64.deb ... 185s Unpacking libdeflate0:amd64 (1.23-2) ... 185s Selecting previously unselected package libfyba0t64:amd64. 185s Preparing to unpack .../037-libfyba0t64_4.1.1-11build2_amd64.deb ... 185s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 185s Selecting previously unselected package libminizip1t64:amd64. 185s Preparing to unpack .../038-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 185s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 185s Selecting previously unselected package libfreexl1:amd64. 185s Preparing to unpack .../039-libfreexl1_2.0.0-1build3_amd64.deb ... 185s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 185s Selecting previously unselected package libgeos3.14.1:amd64. 185s Preparing to unpack .../040-libgeos3.14.1_3.14.1-2_amd64.deb ... 185s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 185s Selecting previously unselected package libgeos-c1t64:amd64. 185s Preparing to unpack .../041-libgeos-c1t64_3.14.1-2_amd64.deb ... 185s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 185s Selecting previously unselected package proj-data. 185s Preparing to unpack .../042-proj-data_9.7.1-1_all.deb ... 185s Unpacking proj-data (9.7.1-1) ... 186s Selecting previously unselected package libjbig0:amd64. 186s Preparing to unpack .../043-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 186s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 186s Selecting previously unselected package liblerc4:amd64. 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package libpaper2:amd64. 187s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_amd64.deb ... 187s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 187s Selecting previously unselected package libpaper-utils. 187s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 187s Unpacking libpaper-utils (2.2.5-0.3build1) ... 187s Selecting previously unselected package libsm6:amd64. 187s Preparing to unpack .../109-libsm6_2%3a1.2.6-1_amd64.deb ... 187s Unpacking libsm6:amd64 (2:1.2.6-1) ... 187s Selecting previously unselected package libtcl8.6:amd64. 187s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 187s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 187s Selecting previously unselected package libxft2:amd64. 187s Preparing to unpack .../111-libxft2_2.3.6-1build2_amd64.deb ... 187s Unpacking libxft2:amd64 (2.3.6-1build2) ... 187s Selecting previously unselected package libxss1:amd64. 187s Preparing to unpack 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(3.4.3-2) ... 187s Selecting previously unselected package node-html5shiv. 187s Preparing to unpack .../118-node-html5shiv_3.7.3+dfsg-5_all.deb ... 187s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 187s Selecting previously unselected package node-normalize.css. 187s Preparing to unpack .../119-node-normalize.css_8.0.1-5.1_all.deb ... 187s Unpacking node-normalize.css (8.0.1-5.1) ... 187s Selecting previously unselected package pandoc-data. 187s Preparing to unpack .../120-pandoc-data_3.1.11.1-3build1_all.deb ... 187s Unpacking pandoc-data (3.1.11.1-3build1) ... 187s Selecting previously unselected package pandoc. 187s Preparing to unpack .../121-pandoc_3.1.11.1+ds-4_amd64.deb ... 187s Unpacking pandoc (3.1.11.1+ds-4) ... 187s Selecting previously unselected package zip. 187s Preparing to unpack .../122-zip_3.0-15ubuntu2_amd64.deb ... 187s Unpacking zip (3.0-15ubuntu2) ... 187s Selecting previously unselected package unzip. 187s Preparing to unpack .../123-unzip_6.0-29ubuntu1_amd64.deb 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.../129-r-cran-glue_1.8.0-1_amd64.deb ... 188s Unpacking r-cran-glue (1.8.0-1) ... 188s Selecting previously unselected package r-cran-rlang. 188s Preparing to unpack .../130-r-cran-rlang_1.1.5-3_amd64.deb ... 188s Unpacking r-cran-rlang (1.1.5-3) ... 188s Selecting previously unselected package r-cran-lifecycle. 188s Preparing to unpack .../131-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 188s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 188s Selecting previously unselected package r-cran-magrittr. 188s Preparing to unpack .../132-r-cran-magrittr_2.0.3-1_amd64.deb ... 188s Unpacking r-cran-magrittr (2.0.3-1) ... 188s Selecting previously unselected package r-cran-utf8. 188s Preparing to unpack .../133-r-cran-utf8_1.2.4-1_amd64.deb ... 188s Unpacking r-cran-utf8 (1.2.4-1) ... 188s Selecting previously unselected package r-cran-vctrs. 188s Preparing to unpack .../134-r-cran-vctrs_0.6.5-1_amd64.deb ... 188s Unpacking r-cran-vctrs (0.6.5-1) ... 188s Selecting previously unselected package r-cran-pillar. 188s Preparing to unpack .../135-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 188s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 188s Selecting previously unselected package r-cran-r6. 188s Preparing to unpack .../136-r-cran-r6_2.6.1-1_all.deb ... 188s Unpacking r-cran-r6 (2.6.1-1) ... 188s Selecting previously unselected package r-cran-fansi. 188s Preparing to unpack .../137-r-cran-fansi_1.0.6-2_amd64.deb ... 188s Unpacking r-cran-fansi (1.0.6-2) ... 188s Selecting previously unselected package r-cran-pkgconfig. 188s Preparing to unpack .../138-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 188s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 188s Selecting previously unselected package r-cran-tibble. 188s Preparing to unpack .../139-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 188s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 188s Selecting previously unselected package r-cran-withr. 188s Preparing to unpack .../140-r-cran-withr_3.0.2+dfsg-1_all.deb ... 188s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 188s Selecting previously unselected package r-cran-tidyselect. 188s Preparing to unpack .../141-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 188s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 188s Selecting previously unselected package r-cran-dplyr. 188s Preparing to unpack .../142-r-cran-dplyr_1.1.4-4_amd64.deb ... 188s Unpacking r-cran-dplyr (1.1.4-4) ... 188s Selecting previously unselected package r-cran-purrr. 188s Preparing to unpack .../143-r-cran-purrr_1.0.4-1_amd64.deb ... 188s Unpacking r-cran-purrr (1.0.4-1) ... 188s Selecting previously unselected package r-cran-mass. 188s Preparing to unpack .../144-r-cran-mass_7.3-65-1_amd64.deb ... 188s Unpacking r-cran-mass (7.3-65-1) ... 188s Selecting previously unselected package r-cran-class. 188s Preparing to unpack .../145-r-cran-class_7.3-23-1_amd64.deb ... 188s Unpacking r-cran-class (7.3-23-1) ... 188s Selecting previously unselected package r-cran-proxy. 188s Preparing to unpack .../146-r-cran-proxy_0.4-27-1_amd64.deb ... 188s Unpacking r-cran-proxy (0.4-27-1) ... 188s Selecting previously unselected package r-cran-e1071. 188s Preparing to unpack .../147-r-cran-e1071_1.7-17-1_amd64.deb ... 188s Unpacking r-cran-e1071 (1.7-17-1) ... 188s Selecting previously unselected package r-cran-kernsmooth. 188s Preparing to unpack .../148-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 188s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 188s Selecting previously unselected package r-cran-classint. 188s Preparing to unpack .../149-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 188s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 188s Selecting previously unselected package r-cran-dbi. 188s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ... 188s Unpacking r-cran-dbi (1.2.3-1build1) ... 188s Selecting previously unselected package r-cran-littler. 188s Preparing to unpack .../151-r-cran-littler_0.3.21-2_amd64.deb ... 188s Unpacking r-cran-littler (0.3.21-2) ... 188s Selecting previously unselected package r-cran-pkgkitten. 188s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 188s Unpacking r-cran-pkgkitten (0.2.4-1) ... 188s Selecting previously unselected package r-cran-rcpp. 188s Preparing to unpack .../153-r-cran-rcpp_1.1.0-1_amd64.deb ... 188s Unpacking r-cran-rcpp (1.1.0-1) ... 188s Selecting previously unselected package r-cran-wk. 188s Preparing to unpack .../154-r-cran-wk_0.9.4-1_amd64.deb ... 188s Unpacking r-cran-wk (0.9.4-1) ... 188s Selecting previously unselected package r-cran-s2. 188s Preparing to unpack .../155-r-cran-s2_1.1.9-1build1_amd64.deb ... 188s Unpacking r-cran-s2 (1.1.9-1build1) ... 188s Selecting previously unselected package r-cran-units. 188s Preparing to unpack .../156-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 188s Unpacking r-cran-units (0.8-7+dfsg-2) ... 188s Selecting previously unselected package r-cran-sf. 188s Preparing to unpack .../157-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 188s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 188s Selecting previously unselected package r-cran-areal. 188s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 188s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 188s Selecting previously unselected package r-cran-sys. 188s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 188s Unpacking r-cran-sys (3.4.3-1) ... 188s Selecting previously unselected package r-cran-askpass. 188s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 188s Unpacking r-cran-askpass (1.2.1-1) ... 188s Selecting previously unselected package r-cran-base64enc. 188s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 188s Unpacking r-cran-base64enc (0.1-3-3build1) ... 188s Selecting previously unselected package r-cran-bdsmatrix. 188s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 188s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 188s Selecting previously unselected package r-cran-brio. 188s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 188s Unpacking r-cran-brio (1.1.5-1) ... 188s Selecting previously unselected package r-cran-fastmap. 188s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 188s Unpacking r-cran-fastmap (1.2.0-1) ... 188s Selecting previously unselected package r-cran-cachem. 188s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 188s Unpacking r-cran-cachem (1.1.0-1) ... 188s Selecting previously unselected package r-cran-digest. 188s Preparing to unpack .../166-r-cran-digest_0.6.39-1_amd64.deb ... 188s Unpacking r-cran-digest (0.6.39-1) ... 188s Selecting previously unselected package r-cran-htmltools. 189s Preparing to unpack .../167-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 189s Unpacking r-cran-htmltools (0.5.8.1-1) ... 189s Selecting previously unselected package r-cran-jquerylib. 189s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 189s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 189s Selecting previously unselected package r-cran-jsonlite. 189s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 189s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 189s Selecting previously unselected package r-cran-memoise. 189s Preparing to unpack .../170-r-cran-memoise_2.0.1-1build1_all.deb ... 189s Unpacking r-cran-memoise (2.0.1-1build1) ... 189s Selecting previously unselected package r-cran-mime. 189s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 189s Unpacking r-cran-mime (0.12-2) ... 189s Selecting previously unselected package r-cran-fs. 189s Preparing to unpack .../172-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 189s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 189s Selecting previously unselected package r-cran-rappdirs. 189s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 189s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 189s Selecting previously unselected package r-cran-sass. 189s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 189s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 189s Selecting previously unselected package r-cran-bslib. 189s Preparing to unpack .../175-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 189s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 189s Selecting previously unselected package r-cran-cairo. 189s Preparing to unpack .../176-r-cran-cairo_1.6-2-1_amd64.deb ... 189s Unpacking r-cran-cairo (1.6-2-1) ... 189s Selecting previously unselected package r-cran-ps. 189s Preparing to unpack .../177-r-cran-ps_1.9.0-1_amd64.deb ... 189s Unpacking r-cran-ps (1.9.0-1) ... 189s Selecting previously unselected package r-cran-processx. 189s Preparing to unpack .../178-r-cran-processx_3.8.6-1_amd64.deb ... 189s Unpacking r-cran-processx (3.8.6-1) ... 189s Selecting previously unselected package r-cran-callr. 189s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 189s Unpacking r-cran-callr (3.7.6-1) ... 189s Selecting previously unselected package r-cran-cftime. 189s Preparing to unpack .../180-r-cran-cftime_1.7.2-1_all.deb ... 189s Unpacking r-cran-cftime (1.7.2-1) ... 189s Selecting previously unselected package r-cran-cluster. 189s Preparing to unpack .../181-r-cran-cluster_2.1.8.1-1_amd64.deb ... 189s Unpacking r-cran-cluster (2.1.8.1-1) ... 189s Selecting previously unselected package r-cran-clue. 189s Preparing to unpack .../182-r-cran-clue_0.3-66-1_amd64.deb ... 189s Unpacking r-cran-clue (0.3-66-1) ... 189s Selecting previously unselected package r-cran-codetools. 189s Preparing to unpack .../183-r-cran-codetools_0.2-20-1build1_all.deb ... 189s Unpacking r-cran-codetools (0.2-20-1build1) ... 189s Selecting previously unselected package r-cran-collapse. 189s Preparing to unpack .../184-r-cran-collapse_2.1.0-1_amd64.deb ... 189s Unpacking r-cran-collapse (2.1.0-1) ... 189s Selecting previously unselected package r-cran-commonmark. 189s Preparing to unpack .../185-r-cran-commonmark_1.9.5-1_amd64.deb ... 189s Unpacking r-cran-commonmark (1.9.5-1) ... 189s Selecting previously unselected package r-cran-lazyeval. 189s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 189s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 189s Selecting previously unselected package r-cran-rex. 189s Preparing to unpack .../187-r-cran-rex_1.2.1-1build1_all.deb ... 189s Unpacking r-cran-rex (1.2.1-1build1) ... 189s Selecting previously unselected package r-cran-curl. 189s Preparing to unpack .../188-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 189s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-openssl. 189s Preparing to unpack .../189-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 189s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 189s Selecting previously unselected package r-cran-httr. 189s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 189s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 189s Selecting previously unselected package r-cran-crayon. 189s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ... 189s Unpacking r-cran-crayon (1.5.3-1) ... 189s Selecting previously unselected package r-cran-yaml. 189s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_amd64.deb ... 189s Unpacking r-cran-yaml (2.3.10-1) ... 189s Selecting previously unselected package r-cran-covr. 189s Preparing to unpack .../193-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 189s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 189s Selecting previously unselected package r-cran-cpp11. 189s Preparing to unpack .../194-r-cran-cpp11_0.5.3-1_all.deb ... 189s Unpacking r-cran-cpp11 (0.5.3-1) ... 189s Selecting previously unselected package r-cran-cubelyr. 189s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 189s Unpacking r-cran-cubelyr (1.0.2-1) ... 189s Selecting previously unselected package r-cran-deldir. 189s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 189s Unpacking r-cran-deldir (2.0-4-1build1) ... 189s Selecting previously unselected package r-cran-desc. 189s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 189s Unpacking r-cran-desc (1.4.3-1) ... 189s Selecting previously unselected package r-cran-diffobj. 189s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 189s Unpacking r-cran-diffobj (0.3.5-1build1) ... 189s Selecting previously unselected package r-cran-evaluate. 189s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 189s Unpacking r-cran-evaluate (1.0.3-1) ... 189s Selecting previously unselected package r-cran-lattice. 189s Preparing to unpack .../200-r-cran-lattice_0.22-7-1_amd64.deb ... 189s Unpacking r-cran-lattice (0.22-7-1) ... 189s Selecting previously unselected package r-cran-sp. 189s Preparing to unpack .../201-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 189s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 189s Selecting previously unselected package r-cran-terra. 189s Preparing to unpack .../202-r-cran-terra_1.8-70-1build2_amd64.deb ... 189s Unpacking r-cran-terra (1.8-70-1build2) ... 189s Selecting previously unselected package r-cran-raster. 189s Preparing to unpack .../203-r-cran-raster_3.6-32-1_amd64.deb ... 189s Unpacking r-cran-raster (3.6-32-1) ... 189s Selecting previously unselected package r-cran-exactextractr. 189s Preparing to unpack .../204-r-cran-exactextractr_0.10.0-1build2_amd64.deb ... 189s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 189s Selecting previously unselected package r-cran-farver. 189s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 189s Unpacking r-cran-farver (2.1.2-1) ... 189s Selecting previously unselected package r-cran-fnn. 189s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 189s Unpacking r-cran-fnn (1.1.4.1-1) ... 189s Selecting previously unselected package r-cran-fontawesome. 189s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 189s Unpacking r-cran-fontawesome (0.5.3-1) ... 189s Selecting previously unselected package r-cran-formula. 189s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 189s Unpacking r-cran-formula (1.2-5-1) ... 189s Selecting previously unselected package r-cran-globals. 189s Preparing to unpack .../209-r-cran-globals_0.18.0-1_all.deb ... 189s Unpacking r-cran-globals (0.18.0-1) ... 189s Selecting previously unselected package r-cran-listenv. 189s Preparing to unpack .../210-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 189s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-parallelly. 189s Preparing to unpack .../211-r-cran-parallelly_1.42.0-1_amd64.deb ... 189s Unpacking r-cran-parallelly (1.42.0-1) ... 189s Selecting previously unselected package r-cran-future. 189s Preparing to unpack .../212-r-cran-future_1.34.0+dfsg-1_all.deb ... 189s Unpacking r-cran-future (1.34.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-future.apply. 189s Preparing to unpack .../213-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 189s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 189s Selecting previously unselected package r-cran-gtable. 189s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 189s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 189s Selecting previously unselected package r-cran-isoband. 189s Preparing to unpack .../215-r-cran-isoband_0.2.7-1_amd64.deb ... 189s Unpacking r-cran-isoband (0.2.7-1) ... 189s Selecting previously unselected package r-cran-nlme. 189s Preparing to unpack .../216-r-cran-nlme_3.1.168-1_amd64.deb ... 189s Unpacking r-cran-nlme (3.1.168-1) ... 189s Selecting previously unselected package r-cran-matrix. 189s Preparing to unpack .../217-r-cran-matrix_1.7-4-1_amd64.deb ... 189s Unpacking r-cran-matrix (1.7-4-1) ... 190s Selecting previously unselected package r-cran-mgcv. 190s Preparing to unpack .../218-r-cran-mgcv_1.9-4-1_amd64.deb ... 190s Unpacking r-cran-mgcv (1.9-4-1) ... 190s Selecting previously unselected package r-cran-labeling. 190s Preparing to unpack .../219-r-cran-labeling_0.4.3-1_all.deb ... 190s Unpacking r-cran-labeling (0.4.3-1) ... 190s Selecting previously unselected package r-cran-rcolorbrewer. 190s Preparing to unpack .../220-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 190s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 190s Selecting previously unselected package r-cran-viridislite. 190s Preparing to unpack .../221-r-cran-viridislite_0.4.2-2_all.deb ... 190s Unpacking r-cran-viridislite (0.4.2-2) ... 190s Selecting previously unselected package r-cran-scales. 190s Preparing to unpack .../222-r-cran-scales_1.4.0-1_all.deb ... 190s Unpacking r-cran-scales (1.4.0-1) ... 190s Selecting previously unselected package r-cran-ggplot2. 190s Preparing to unpack .../223-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 190s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 190s Selecting previously unselected package r-cran-tweenr. 190s Preparing to unpack .../224-r-cran-tweenr_2.0.3-1_amd64.deb ... 190s Unpacking r-cran-tweenr (2.0.3-1) ... 190s Selecting previously unselected package r-cran-polyclip. 190s Preparing to unpack .../225-r-cran-polyclip_1.10-7-1_amd64.deb ... 190s Unpacking r-cran-polyclip (1.10-7-1) ... 190s Selecting previously unselected package r-cran-systemfonts. 190s Preparing to unpack .../226-r-cran-systemfonts_1.2.1-1_amd64.deb ... 190s Unpacking r-cran-systemfonts (1.2.1-1) ... 190s Selecting previously unselected package r-cran-rcppeigen. 190s Preparing to unpack .../227-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 190s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 190s Selecting previously unselected package r-cran-ggforce. 190s Preparing to unpack .../228-r-cran-ggforce_0.4.2-1_amd64.deb ... 190s Unpacking r-cran-ggforce (0.4.2-1) ... 190s Selecting previously unselected package r-cran-stringi. 190s Preparing to unpack .../229-r-cran-stringi_1.8.4-1build2_amd64.deb ... 190s Unpacking r-cran-stringi (1.8.4-1build2) ... 190s Selecting previously unselected package r-cran-stringr. 190s Preparing to unpack .../230-r-cran-stringr_1.5.1-1_all.deb ... 190s Unpacking r-cran-stringr (1.5.1-1) ... 190s Selecting previously unselected package r-cran-ggthemes. 190s Preparing to unpack .../231-r-cran-ggthemes_5.2.0-1_all.deb ... 190s Unpacking r-cran-ggthemes (5.2.0-1) ... 190s Selecting previously unselected package r-cran-goftest. 190s Preparing to unpack .../232-r-cran-goftest_1.2-3-1build1_amd64.deb ... 190s Unpacking r-cran-goftest (1.2-3-1build1) ... 190s Selecting previously unselected package r-cran-gridextra. 190s Preparing to unpack .../233-r-cran-gridextra_2.3-3build2_all.deb ... 190s Unpacking r-cran-gridextra (2.3-3build2) ... 190s Selecting previously unselected package r-cran-zoo. 190s Preparing to unpack .../234-r-cran-zoo_1.8-15-1_amd64.deb ... 190s Unpacking r-cran-zoo (1.8-15-1) ... 190s Selecting previously unselected package r-cran-sftime. 190s Preparing to unpack .../235-r-cran-sftime_0.2-0-6_all.deb ... 190s Unpacking r-cran-sftime (0.2-0-6) ... 190s Selecting previously unselected package r-cran-xts. 190s Preparing to unpack .../236-r-cran-xts_0.14.1-1_amd64.deb ... 190s Unpacking r-cran-xts (0.14.1-1) ... 190s Selecting previously unselected package r-cran-intervals. 190s Preparing to unpack .../237-r-cran-intervals_0.15.5-1_amd64.deb ... 190s Unpacking r-cran-intervals (0.15.5-1) ... 190s Selecting previously unselected package r-cran-spacetime. 190s Preparing to unpack .../238-r-cran-spacetime_1.3-3-2_all.deb ... 190s Unpacking r-cran-spacetime (1.3-3-2) ... 190s Selecting previously unselected package r-cran-stars. 190s Preparing to unpack .../239-r-cran-stars_0.6-8-1_all.deb ... 190s Unpacking r-cran-stars (0.6-8-1) ... 190s Selecting previously unselected package r-cran-gstat. 190s Preparing to unpack .../240-r-cran-gstat_2.1-3-2_amd64.deb ... 190s Unpacking r-cran-gstat (2.1-3-2) ... 190s Selecting previously unselected package r-cran-xfun. 190s Preparing to unpack .../241-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 190s Unpacking r-cran-xfun (0.55+dfsg-1) ... 190s Selecting previously unselected package r-cran-highr. 190s Preparing to unpack .../242-r-cran-highr_0.11+dfsg-1_all.deb ... 190s Unpacking r-cran-highr (0.11+dfsg-1) ... 190s Selecting previously unselected package r-cran-later. 190s Preparing to unpack .../243-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 190s Unpacking r-cran-later (1.4.1+dfsg-1) ... 190s Selecting previously unselected package r-cran-promises. 190s Preparing to unpack .../244-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 190s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 190s Selecting previously unselected package r-cran-httpuv. 190s Preparing to unpack .../245-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 190s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 190s Selecting previously unselected package libjs-mathjax. 190s Preparing to unpack .../246-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 190s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 190s Selecting previously unselected package r-cran-knitr. 190s Preparing to unpack .../247-r-cran-knitr_1.51+dfsg-1_all.deb ... 190s Unpacking r-cran-knitr (1.51+dfsg-1) ... 190s Selecting previously unselected package r-cran-lmtest. 190s Preparing to unpack .../248-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 190s Unpacking r-cran-lmtest (0.9.40-1build1) ... 190s Selecting previously unselected package r-cran-lwgeom. 190s Preparing to unpack .../249-r-cran-lwgeom_0.2-14-1_amd64.deb ... 190s Unpacking r-cran-lwgeom (0.2-14-1) ... 190s Selecting previously unselected package r-cran-maps. 190s Preparing to unpack .../250-r-cran-maps_3.4.2.1-1_amd64.deb ... 190s Unpacking r-cran-maps (3.4.2.1-1) ... 190s Selecting previously unselected package r-cran-mapdata. 191s Preparing to unpack .../251-r-cran-mapdata_2.3.1-1_amd64.deb ... 191s Unpacking r-cran-mapdata (2.3.1-1) ... 191s Selecting previously unselected package r-cran-misctools. 191s Preparing to unpack .../252-r-cran-misctools_0.6-28-1_all.deb ... 191s Unpacking r-cran-misctools (0.6-28-1) ... 191s Selecting previously unselected package r-cran-sandwich. 191s Preparing to unpack .../253-r-cran-sandwich_3.1-1-1_all.deb ... 191s Unpacking r-cran-sandwich (3.1-1-1) ... 191s Selecting previously unselected package r-cran-maxlik. 191s Preparing to unpack .../254-r-cran-maxlik_1.5-2.2-1_all.deb ... 191s Unpacking r-cran-maxlik (1.5-2.2-1) ... 191s Selecting previously unselected package r-cran-rnetcdf. 191s Preparing to unpack .../255-r-cran-rnetcdf_2.9-2-1_amd64.deb ... 191s Unpacking r-cran-rnetcdf (2.9-2-1) ... 191s Selecting previously unselected package r-cran-tidyr. 191s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 191s Unpacking r-cran-tidyr (1.3.1-1) ... 191s Selecting previously unselected package r-cran-ncmeta. 191s Preparing to unpack .../257-r-cran-ncmeta_0.4.0-1_all.deb ... 191s Unpacking r-cran-ncmeta (0.4.0-1) ... 191s Selecting previously unselected package r-cran-ncdfgeom. 191s Preparing to unpack .../258-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 191s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 191s Selecting previously unselected package r-cran-pbapply. 191s Preparing to unpack .../259-r-cran-pbapply_1.7-2-1_all.deb ... 191s Unpacking r-cran-pbapply (1.7-2-1) ... 191s Selecting previously unselected package r-cran-pcict. 191s Preparing to unpack .../260-r-cran-pcict_0.5-4.4-1_amd64.deb ... 191s Unpacking r-cran-pcict (0.5-4.4-1) ... 191s Selecting previously unselected package r-cran-pkgbuild. 191s Preparing to unpack .../261-r-cran-pkgbuild_1.4.8-1_all.deb ... 191s Unpacking r-cran-pkgbuild (1.4.8-1) ... 191s Selecting previously unselected package r-cran-rprojroot. 191s Preparing to unpack .../262-r-cran-rprojroot_2.1.1-1_all.deb ... 191s Unpacking r-cran-rprojroot (2.1.1-1) ... 191s Selecting previously unselected package r-cran-pkgload. 191s Preparing to unpack .../263-r-cran-pkgload_1.4.1-1_all.deb ... 191s Unpacking r-cran-pkgload (1.4.1-1) ... 191s Selecting previously unselected package r-cran-rbibutils. 191s Preparing to unpack .../264-r-cran-rbibutils_2.3-1_amd64.deb ... 191s Unpacking r-cran-rbibutils (2.3-1) ... 191s Selecting previously unselected package r-cran-rdpack. 191s Preparing to unpack .../265-r-cran-rdpack_2.6.3-1_all.deb ... 191s Unpacking r-cran-rdpack (2.6.3-1) ... 191s Selecting previously unselected package r-cran-plm. 191s Preparing to unpack .../266-r-cran-plm_2.6-7-1_all.deb ... 191s Unpacking r-cran-plm (2.6-7-1) ... 191s Selecting previously unselected package r-cran-praise. 191s Preparing to unpack .../267-r-cran-praise_1.0.0-4build2_all.deb ... 191s Unpacking r-cran-praise (1.0.0-4build2) ... 191s Selecting previously unselected package r-cran-randomforest. 191s Preparing to unpack .../268-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 191s Unpacking r-cran-randomforest (4.7-1.2-1) ... 191s Selecting previously unselected package r-cran-tinytex. 191s Preparing to unpack .../269-r-cran-tinytex_0.58-1_all.deb ... 191s Unpacking r-cran-tinytex (0.58-1) ... 191s Selecting previously unselected package libjs-modernizr. 191s Preparing to unpack .../270-libjs-modernizr_3.13.0-0.1build1_all.deb ... 191s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 191s Selecting previously unselected package r-cran-xtable. 191s Preparing to unpack .../271-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 191s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 191s Selecting previously unselected package r-cran-sourcetools. 191s Preparing to unpack .../272-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 191s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 191s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 191s Preparing to unpack .../273-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 191s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 191s Selecting previously unselected package r-cran-shiny. 191s Preparing to unpack .../274-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 191s Unpacking 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r-cran-sf (1.0-19+dfsg-2build2) ... 194s Setting up r-cran-stars (0.6-8-1) ... 195s Setting up r-cran-sftime (0.2-0-6) ... 195s Setting up r-cran-areal (0.1.8+dfsg-2) ... 195s Setting up r-cran-gstat (2.1-3-2) ... 195s Setting up r-cran-raster (3.6-32-1) ... 195s Setting up r-cran-lwgeom (0.2-14-1) ... 195s Setting up r-cran-exactextractr (0.10.0-1build2) ... 195s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 195s Processing triggers for libc-bin (2.42-2ubuntu4) ... 195s Processing triggers for man-db (2.13.1-1) ... 195s Processing triggers for install-info (7.2-5) ... 196s autopkgtest [19:27:51]: test run-unit-test: [----------------------- 196s BEGIN TEST aggregate.R 196s 196s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 196s Copyright (C) 2025 The R Foundation for Statistical Computing 196s Platform: x86_64-pc-linux-gnu 196s 196s R is free software and comes with ABSOLUTELY NO WARRANTY. 196s You are welcome to redistribute it under certain conditions. 196s Type 'license()' or 'licence()' for distribution details. 196s 196s R is a collaborative project with many contributors. 196s Type 'contributors()' for more information and 196s 'citation()' on how to cite R or R packages in publications. 196s 196s Type 'demo()' for some demos, 'help()' for on-line help, or 196s 'help.start()' for an HTML browser interface to help. 196s Type 'q()' to quit R. 196s 197s Loading required package: abind 197s Loading required package: sf 197s > ## IGNORE_RDIFF_BEGIN 197s > library(stars) 197s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 197s > ## IGNORE_RDIFF_END 197s > 197s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 197s + data(air) # this loads several datasets in .GlobalEnv 197s + dim(air) 197s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 197s + 197s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 197s + n = c(3,3)) 197s + 197s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 197s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 197s + } 197s stars object with 2 dimensions and 1 attribute 197s attribute(s): 197s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 197s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 197s dimension(s): 197s from to offset delta refsys point 197s station 1 70 NA NA WGS 84 TRUE 197s time 1 4383 1998-01-01 1 days Date FALSE 197s values 197s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 197s time NULL 197s stars object with 2 dimensions and 1 attribute 197s attribute(s): 197s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 197s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 197s dimension(s): 197s from to offset delta refsys point 197s geometry 1 9 NA NA WGS 84 FALSE 197s time 1 4383 1998-01-01 1 days Date FALSE 197s values 197s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 197s time NULL 197s > 197s > # adapted from ?read_stars: 197s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 197s > st = st_as_stars(m) 197s > attr(st, "dimensions")$y$delta = -1 197s > attr(st, "dimensions")$y$offset = 12 197s > tm = as.Date("2019-02-19") + 1:6 197s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 197s > 197s > tmp = tempfile(fileext = ".tif") 197s > write_stars(st, tmp) 197s > 197s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 197s + nBufXSize = 2, nBufYSize = 2)), "foo")) 197s stars object with 3 dimensions and 1 attribute 197s attribute(s): 197s Min. 1st Qu. Median Mean 3rd Qu. Max. 197s foo 33 199.25 365.5 365.5 531.75 698 197s dimension(s): 197s from to offset delta refsys point x/y 197s x 1 2 0 5 WGS 84 FALSE [x] 197s y 1 2 12 -6 WGS 84 FALSE [y] 197s band 1 6 NA NA NA NA 197s > 197s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 197s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 197s stars object with 2 dimensions and 1 attribute 197s attribute(s): 197s Min. 1st Qu. Median Mean 3rd Qu. Max. 197s A1 28 194.25 360.5 360.5 526.75 693 197s dimension(s): 198s from to offset delta refsys point 198s geom 1 4 NA NA WGS 84 FALSE 198s t 1 6 2019-02-20 1 days Date FALSE 198s values 198s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 198s t NULL 198s > (a = aggregate(st, sfc, mean)) 198s stars object with 2 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. 198s A1 28 194.25 360.5 360.5 526.75 693 198s dimension(s): 198s from to offset delta refsys point 198s geometry 1 4 NA NA WGS 84 FALSE 198s t 1 6 2019-02-20 1 days Date FALSE 198s values 198s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 198s t NULL 198s > 198s > tm0 = as.Date("2019-02-19") + -1:8 198s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 198s stars object with 3 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 198s A1 1 180.75 360.5 360.5 540.25 720 480 198s dimension(s): 198s from to offset delta refsys point x/y 198s time 1 10 2019-02-18 1 days Date NA 198s x 1 10 0 1 WGS 84 FALSE [x] 198s y 1 12 12 -1 WGS 84 FALSE [y] 198s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 198s stars object with 3 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. 198s A1 1 180.75 360.5 360.5 540.25 720 198s dimension(s): 198s from to offset delta refsys point x/y 198s time 1 6 2019-02-20 1 days Date NA 198s x 1 10 0 1 WGS 84 FALSE [x] 198s y 1 12 12 -1 WGS 84 FALSE [y] 198s > yd = function(x) as.POSIXlt(x)$yday 198s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 198s stars object with 3 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. 198s A1 1 180.75 360.5 360.5 540.25 720 198s dimension(s): 198s from to offset delta refsys point values x/y 198s geometry 1 6 NA NA NA NA 50,...,55 198s x 1 10 0 1 WGS 84 FALSE NULL [x] 198s y 1 12 12 -1 WGS 84 FALSE NULL [y] 198s > 198s > # with "by" geometry not overlapping x 198s > pt = st_point(c(-10,-10)) 198s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 198s Geometry set for 5 features 198s Geometry type: GEOMETRY 198s Dimension: XY 198s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 198s Geodetic CRS: WGS 84 198s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 198s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 198s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 198s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 198s > (a = aggregate(st, sfc, mean)) 198s POINT (-10 -10) 198s stars object with 2 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 198s A1 28 194.25 360.5 360.5 526.75 693 6 198s dimension(s): 198s from to offset delta refsys point 198s geometry 1 5 NA NA WGS 84 FALSE 198s t 1 6 2019-02-20 1 days Date FALSE 198s values 198s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 198s t NULL 198s > (a = aggregate(st, st, mean)) 198s stars object with 2 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. 198s A1 1 180.75 360.5 360.5 540.25 720 198s dimension(s): 198s from to offset delta refsys point 198s geometry 1 120 NA NA WGS 84 FALSE 198s t 1 6 2019-02-20 1 days Date FALSE 198s values 198s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 198s t NULL 198s > 198s BEGIN TEST align.R 198s 198s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 198s Copyright (C) 2025 The R Foundation for Statistical Computing 198s Platform: x86_64-pc-linux-gnu 198s 198s R is free software and comes with ABSOLUTELY NO WARRANTY. 198s You are welcome to redistribute it under certain conditions. 198s Type 'license()' or 'licence()' for distribution details. 198s 198s R is a collaborative project with many contributors. 198s Type 'contributors()' for more information and 198s 'citation()' on how to cite R or R packages in publications. 198s 198s Type 'demo()' for some demos, 'help()' for on-line help, or 198s 'help.start()' for an HTML browser interface to help. 198s Type 'q()' to quit R. 198s 198s > suppressPackageStartupMessages(library(stars)) 198s > set.seed(1331) 198s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 198s Geometry set for 1 feature 198s Geometry type: POINT 198s Dimension: XY 198s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 198s Projected CRS: SIRGAS 2000 / UTM zone 25S 198s POINT (291430.8 9111430) 198s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 198s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 198s > 198s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 198s > plot(b, add = TRUE, col = NA, border = 'red') 198s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 198s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 198s > st_bbox(b) 198s xmin ymin xmax ymax 198s 297116.8 9119404.1 297786.8 9120074.1 198s > bba 198s xmin ymin xmax ymax 198s 297098.3 9119392.8 297810.8 9120076.8 198s > 198s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 198s > plot(b, col = 'red', add = TRUE) 198s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 198s > 198s > b0 = st_buffer(b, -100) 198s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 198s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 198s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 198s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 198s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 198s > plot(b, col = NA, border = 'red', add = TRUE) 198s > 198s > all.equal(bbb, bba) 198s [1] TRUE 198s > 198s BEGIN TEST area.R 198s 198s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 198s Copyright (C) 2025 The R Foundation for Statistical Computing 198s Platform: x86_64-pc-linux-gnu 198s 198s R is free software and comes with ABSOLUTELY NO WARRANTY. 198s You are welcome to redistribute it under certain conditions. 198s Type 'license()' or 'licence()' for distribution details. 198s 198s R is a collaborative project with many contributors. 198s Type 'contributors()' for more information and 198s 'citation()' on how to cite R or R packages in publications. 198s 198s Type 'demo()' for some demos, 'help()' for on-line help, or 198s 'help.start()' for an HTML browser interface to help. 198s Type 'q()' to quit R. 198s 198s > suppressPackageStartupMessages(library(stars)) 199s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 199s > x = read_stars(tif) 199s > (a = st_area(x[,1:5,1:5])) 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. 199s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 199s dimension(s): 199s from to offset delta refsys point x/y 199s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 199s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 199s > 199s > m = matrix(1:20, nrow = 5, ncol = 4) 199s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 199s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 199s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 199s Missing coordinate reference system: assuming Cartesian coordinates 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. 199s m 1 5.75 10.5 10.5 15.25 20 199s dimension(s): 199s from to point values x/y 199s x 1 5 FALSE [0,0.5),...,[4,5) [x] 199s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 199s > # image(r, axes = TRUE, col = grey((1:20)/20)) 199s > (a = st_area(r)) 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. 199s area 0.1 0.2 0.325 0.475 0.5 2 199s dimension(s): 199s from to point values x/y 199s x 1 5 FALSE [0,0.5),...,[4,5) [x] 199s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 199s > #plot(a, axes = TRUE) 199s > 199s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 199s > if (s5p != "") { 199s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 199s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 199s + if (inherits(nit.c[[1]], "units")) 199s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 199s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 199s + st_crs(nit.c) = 4326 199s + print((a <- st_area(nit.c[,1:5,1:5]))) 199s + # plot(a, axes = TRUE, border = NA) 199s + } 199s > 199s BEGIN TEST crop.R 199s 199s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 199s Copyright (C) 2025 The R Foundation for Statistical Computing 199s Platform: x86_64-pc-linux-gnu 199s 199s R is free software and comes with ABSOLUTELY NO WARRANTY. 199s You are welcome to redistribute it under certain conditions. 199s Type 'license()' or 'licence()' for distribution details. 199s 199s R is a collaborative project with many contributors. 199s Type 'contributors()' for more information and 199s 'citation()' on how to cite R or R packages in publications. 199s 199s Type 'demo()' for some demos, 'help()' for on-line help, or 199s 'help.start()' for an HTML browser interface to help. 199s Type 'q()' to quit R. 199s 199s > suppressPackageStartupMessages(library(stars)) 199s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 199s > x = read_stars(tif) 199s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 199s + 9111328.49619133)), .Names = c("x", "y")) 199s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 199s > image(x, axes = TRUE) 199s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 199s > 199s > bb = st_bbox(pts) 199s > (xx = x[bb]) 199s stars object with 3 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. 199s L7_ETMs.tif 3 56 73 70.87303 89 255 199s dimension(s): 199s from to offset delta refsys point x/y 199s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 199s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 199s band 1 6 NA NA NA NA 199s > image(xx) 199s > plot(st_as_sfc(bb), add = TRUE, col = NA) 199s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 199s Sparse geometry binary predicate list of length 1, where the predicate 199s was `contains' 199s 1: 1 199s > 199s > image(x) 199s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 199s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 199s > plot(buf, add = TRUE) 199s > 199s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 199s + crs = st_crs(x)) 199s > image(x[buf]) 199s > plot(buf, add = TRUE, col = NA) 199s > image(x[buf,crop=FALSE]) 200s > plot(buf, add = TRUE, col = NA) 200s > 200s > plot(x, rgb = 1:3) 200s > 200s > # #638: 200s > l = st_as_stars(L7_ETMs) 200s > st_bbox(l) |> st_as_sfc() -> bb 200s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 200s > st_crop(l, b) 200s stars object with 3 dimensions and 1 attribute 200s attribute(s): 200s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 200s L7_ETMs NA NA NA NaN NA NA 737088 200s dimension(s): 200s from to offset delta refsys point x/y 200s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 200s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 200s band 1 6 NA NA NA NA 200s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 200s Warning message: 200s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 200s [,1] 200s [1,] FALSE 200s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 200s > st_crop(l, b) 201s stars object with 3 dimensions and 1 attribute 201s attribute(s): 201s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 201s L7_ETMs NA NA NA NaN NA NA 737088 201s dimension(s): 201s from to offset delta refsys point x/y 201s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 201s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 201s band 1 6 NA NA NA NA 201s > 201s Warning message: 201s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 201s BEGIN TEST curvilinear.R 201s 201s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 201s Copyright (C) 2025 The R Foundation for Statistical Computing 201s Platform: x86_64-pc-linux-gnu 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 201s > suppressPackageStartupMessages(library(stars)) 201s > 201s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 201s > if (s5p != "") { 201s + 201s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 201s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 201s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 201s + lat = read_stars(lat_ds) 201s + lon = read_stars(lon_ds) 201s + nit = read_stars(nit_ds) 201s + nit[[1]][nit[[1]] > 9e+36] = NA 201s + 201s + ll = setNames(c(lon, lat), c("x", "y")) 201s + nit.c0 = st_as_stars(nit, curvilinear = ll) 201s + 201s + # more direct method: 201s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 201s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 201s + if (inherits(nit.c[[1]], "units")) 201s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 201s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 201s + all.equal(nit.c0, nit.c) 201s + st_crs(nit.c) = 4326 201s + print(nit.c) 201s + 201s + if (FALSE && capabilities()["png"]) { 201s + png("nit1.png", 800, 800) 201s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 201s + maps::map('world', add = TRUE, col = 'red') 201s + dev.off() 201s + 201s + png("nit2.png", 800, 800) 201s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 201s + maps::map('world', add = TRUE, col = 'red') 201s + dev.off() 201s + 201s + nit.c = stars:::st_downsample(nit.c, 8) 201s + print(nit.c) 201s + 201s + png("nit3.png", 800, 800) 201s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 201s + maps::map('world', add = TRUE, col = 'red') 201s + dev.off() 201s + 201s + png("nit4.png", 800, 800) 201s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 201s + maps::map('world', add = TRUE, col = 'red') 201s + dev.off() 201s + } 201s + 201s + } 201s > 201s BEGIN TEST datasets.R 201s 201s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 201s Copyright (C) 2025 The R Foundation for Statistical Computing 201s Platform: x86_64-pc-linux-gnu 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 201s > suppressPackageStartupMessages(library(stars)) 201s > bcsd_obs 201s stars_proxy object with 2 attributes in 2 file(s): 201s $foo 201s [1] "[...]/bcsd_obs_1999.nc:pr" 201s 201s $bar 201s [1] "[...]/bcsd_obs_1999.nc:tas" 201s 201s dimension(s): 201s from to offset delta refsys values x/y 201s x 1 81 -85 0.125 NA NULL [x] 201s y 1 33 37.12 -0.125 NA NULL [y] 201s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 201s > L7_ETMs 201s stars_proxy object with 1 attribute in 1 file(s): 201s $L7_ETMs 201s [1] "[...]/L7_ETMs.tif" 201s 201s dimension(s): 201s from to offset delta refsys point x/y 201s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 201s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 201s band 1 6 NA NA NA NA 201s > if (require(starsdata, quietly = TRUE)) { 201s + print(stars_sentinel2) 201s + } 201s > 201s BEGIN TEST dimensions.R 201s 201s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 201s Copyright (C) 2025 The R Foundation for Statistical Computing 201s Platform: x86_64-pc-linux-gnu 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 202s > # https://github.com/r-spatial/stars/issues/295 202s > suppressPackageStartupMessages(library(stars)) 202s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 202s pr, tas, 202s > foo <- function(x, idx) stats::lowess(idx, x)$y 202s > 202s > timeline <- st_get_dimension_values(raw, "time") 202s > smooth = st_apply(raw, 202s + MARGIN = c("x", "y"), 202s + FUN = foo, 202s + idx = st_get_dimension_values(raw, "time") 202s + ) 202s > 202s > st_set_dimensions(smooth, 202s + which = "foo", 202s + values = st_get_dimension_values(raw, "time"), 202s + names = "time" 202s + ) 202s stars object with 3 dimensions and 2 attributes 202s attribute(s): 202s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 202s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 202s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 202s dimension(s): 202s from to offset delta refsys values x/y 202s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 202s x 1 81 -85 0.125 NA NULL [x] 202s y 1 33 37.12 -0.125 NA NULL [y] 202s > 202s > raw %>% 202s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 202s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 202s stars object with 3 dimensions and 2 attributes 202s attribute(s): 202s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 202s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 202s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 202s dimension(s): 202s from to offset delta refsys values x/y 202s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 202s x 1 81 -85 0.125 NA NULL [x] 202s y 1 33 37.12 -0.125 NA NULL [y] 202s > 202s BEGIN TEST downsample.R 202s 202s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 202s Copyright (C) 2025 The R Foundation for Statistical Computing 202s Platform: x86_64-pc-linux-gnu 202s 202s R is free software and comes with ABSOLUTELY NO WARRANTY. 202s You are welcome to redistribute it under certain conditions. 202s Type 'license()' or 'licence()' for distribution details. 202s 202s R is a collaborative project with many contributors. 202s Type 'contributors()' for more information and 202s 'citation()' on how to cite R or R packages in publications. 202s 202s Type 'demo()' for some demos, 'help()' for on-line help, or 202s 'help.start()' for an HTML browser interface to help. 202s Type 'q()' to quit R. 202s 202s > suppressPackageStartupMessages(library(stars)) 203s > m = matrix(1:121, 11, 11) 203s > m 203s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 203s [1,] 1 12 23 34 45 56 67 78 89 100 111 203s [2,] 2 13 24 35 46 57 68 79 90 101 112 203s [3,] 3 14 25 36 47 58 69 80 91 102 113 203s [4,] 4 15 26 37 48 59 70 81 92 103 114 203s [5,] 5 16 27 38 49 60 71 82 93 104 115 203s [6,] 6 17 28 39 50 61 72 83 94 105 116 203s [7,] 7 18 29 40 51 62 73 84 95 106 117 203s [8,] 8 19 30 41 52 63 74 85 96 107 118 203s [9,] 9 20 31 42 53 64 75 86 97 108 119 203s [10,] 10 21 32 43 54 65 76 87 98 109 120 203s [11,] 11 22 33 44 55 66 77 88 99 110 121 203s > s = st_as_stars(m) 203s > st_downsample(s, 1) 203s stars object with 2 dimensions and 1 attribute 203s attribute(s): 203s Min. 1st Qu. Median Mean 3rd Qu. Max. 203s A1 1 28.5 61 61 93.5 121 203s dimension(s): 203s from to offset delta point x/y 203s X1 1 6 0 2 FALSE [x] 203s X2 1 6 0 2 FALSE [y] 203s > st_downsample(s, 1)[[1]] 203s [,1] [,2] [,3] [,4] [,5] [,6] 203s [1,] 1 23 45 67 89 111 203s [2,] 3 25 47 69 91 113 203s [3,] 5 27 49 71 93 115 203s [4,] 7 29 51 73 95 117 203s [5,] 9 31 53 75 97 119 203s [6,] 11 33 55 77 99 121 203s > st_downsample(s, 1, offset = 1) 203s stars object with 2 dimensions and 1 attribute 203s attribute(s): 203s Min. 1st Qu. Median Mean 3rd Qu. Max. 203s A1 13 37 61 61 85 109 203s dimension(s): 203s from to offset delta point x/y 203s X1 1 5 1 2 FALSE [x] 203s X2 1 5 1 2 FALSE [y] 203s > st_downsample(s, 1, offset = 1)[[1]] 203s [,1] [,2] [,3] [,4] [,5] 203s [1,] 13 35 57 79 101 203s [2,] 15 37 59 81 103 203s [3,] 17 39 61 83 105 203s [4,] 19 41 63 85 107 203s [5,] 21 43 65 87 109 203s > st_downsample(s, 1, FUN = mean) 203s stars object with 2 dimensions and 1 attribute 203s attribute(s): 203s Min. 1st Qu. Median Mean 3rd Qu. Max. 203s A1 7 31 55 55 79 103 203s dimension(s): 203s from to offset delta point x/y 203s X1 1 5 0 2 FALSE [x] 203s X2 1 5 0 2 FALSE [y] 203s > st_downsample(s, 1, FUN = mean)[[1]] 203s [,1] [,2] [,3] [,4] [,5] 203s [1,] 7 29 51 73 95 203s [2,] 9 31 53 75 97 203s [3,] 11 33 55 77 99 203s [4,] 13 35 57 79 101 203s [5,] 15 37 59 81 103 203s > st_downsample(s, 1, offset = 1, FUN = mean) 203s stars object with 2 dimensions and 1 attribute 203s attribute(s): 203s Min. 1st Qu. Median Mean 3rd Qu. Max. 203s A1 19 43 67 67 91 115 203s dimension(s): 203s from to offset delta point x/y 203s X1 1 5 1 2 FALSE [x] 203s X2 1 5 1 2 FALSE [y] 203s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 203s [,1] [,2] [,3] [,4] [,5] 203s [1,] 18 40 62 84 106 203s [2,] 20 42 64 86 108 203s [3,] 22 44 66 88 110 203s [4,] 24 46 68 90 112 203s [5,] 26 48 70 92 114 203s > st_downsample(s, 1, offset = c(0,1)) 203s stars object with 2 dimensions and 1 attribute 203s attribute(s): 203s Min. 1st Qu. Median Mean 3rd Qu. Max. 203s A1 12 36.5 61 61 85.5 110 203s dimension(s): 203s from to offset delta point x/y 203s X1 1 6 0 2 FALSE [x] 203s X2 1 5 1 2 FALSE [y] 203s > st_downsample(s, 1, offset = c(0,1))[[1]] 203s [,1] [,2] [,3] [,4] [,5] 203s [1,] 12 34 56 78 100 203s [2,] 14 36 58 80 102 203s [3,] 16 38 60 82 104 203s [4,] 18 40 62 84 106 203s [5,] 20 42 64 86 108 203s [6,] 22 44 66 88 110 203s > 203s BEGIN TEST ee.R 203s 203s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 203s Copyright (C) 2025 The R Foundation for Statistical Computing 203s Platform: x86_64-pc-linux-gnu 203s 203s R is free software and comes with ABSOLUTELY NO WARRANTY. 203s You are welcome to redistribute it under certain conditions. 203s Type 'license()' or 'licence()' for distribution details. 203s 203s R is a collaborative project with many contributors. 203s Type 'contributors()' for more information and 203s 'citation()' on how to cite R or R packages in publications. 203s 203s Type 'demo()' for some demos, 'help()' for on-line help, or 203s 'help.start()' for an HTML browser interface to help. 203s Type 'q()' to quit R. 203s 203s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 203s > options(digits=15) 203s > suppressPackageStartupMessages(library(stars)) 203s > L = st_as_stars(L7_ETMs)[,,,1] 203s > set.seed(123432) 203s > st_bbox(L) |> 203s + st_as_sfc() |> 203s + st_centroid() |> 203s + st_buffer(50) |> 203s + st_sample(10) |> 203s + st_combine() |> 203s + st_convex_hull() -> ch 203s > if (interactive()) { 203s + plot(L, reset = FALSE) 203s + plot(ch, add = TRUE, border = 'red', col = NA) 203s + } 203s > if (FALSE) { 203s + e = st_extract(L, ch)[[1]] 203s + a = aggregate(L, ch, mean)[[1]] 203s + identical(e, a) # same code path 203s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 203s + all.equal(e, ee) 203s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 203s + all.equal(as.vector(ee), aw) 203s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 203s + all.equal(ee0, ee) # ?? 203s + } 203s > 203s BEGIN TEST extract.R 203s 203s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 203s Copyright (C) 2025 The R Foundation for Statistical Computing 203s Platform: x86_64-pc-linux-gnu 203s 203s R is free software and comes with ABSOLUTELY NO WARRANTY. 203s You are welcome to redistribute it under certain conditions. 203s Type 'license()' or 'licence()' for distribution details. 203s 203s R is a collaborative project with many contributors. 203s Type 'contributors()' for more information and 203s 'citation()' on how to cite R or R packages in publications. 203s 203s Type 'demo()' for some demos, 'help()' for on-line help, or 203s 'help.start()' for an HTML browser interface to help. 203s Type 'q()' to quit R. 203s 203s > # Create 'stars' object 203s > set.seed(1331) 203s > suppressPackageStartupMessages(library(stars)) 204s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 204s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 204s > (r = st_as_stars(t(volcano))) 204s stars object with 2 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 204s A1 94 108 124 130.1879 150 195 732 204s dimension(s): 204s from to offset delta point x/y 204s X1 1 61 0 1 FALSE [x] 204s X2 1 99 0 1 FALSE [y] 204s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 204s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 204s > 204s > # Create points 204s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 204s > pnt = st_as_sf(pnt) 204s > 204s > # Extract - 'st_join' 204s > x = st_join(pnt, st_as_sf(r)) 204s > 204s > # Extract - 'st_extract' 204s > y = st_extract(r, pnt) 204s > 204s > # check there are NA's: 204s > any(is.na(x)) 204s [1] TRUE 204s > # Compare 204s > all.equal(x$A1, y[[1]]) 204s [1] TRUE 204s > 204s > ################################################ 204s > if (FALSE) { 204s + 204s + ## tic: segfaults 204s + # check equal results with stars_proxy: 204s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 204s + #all.equal(x$A1, y[[1]]) 204s + #all.equal(x, y) 204s + 204s + r = c(r, 2*r, 10*r) 204s + x = st_join(pnt, st_as_sf(r)) 204s + y = st_as_sf(st_extract(r, pnt)) 204s + all.equal(x, y) 204s + 204s + ## tic: segfaults 204s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 204s + #all.equal(st_as_sf(x), y) 204s + 204s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 204s + xp = read_stars(tif, proxy = TRUE) 204s + xm = read_stars(tif, proxy = FALSE) 204s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 204s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 204s + em = st_extract(xm, pts) 204s + if (utils::packageVersion("sf") >= "0.9-7") { 204s + ep = st_extract(xp, pts) 204s + print(all.equal(ep, em, check.attributes = TRUE)) 204s + } 204s + 204s + # two-attribute objects: 204s + library(stars) 204s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 204s + xp = read_stars(c(tif, tif), proxy = TRUE) 204s + xm = read_stars(c(tif, tif), proxy = FALSE) 204s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 204s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 204s + em = st_extract(xm, pts) 204s + if (utils::packageVersion("sf") >= "0.9-7") { 204s + ep = st_extract(xp, pts) 204s + print(all.equal(ep, em, check.attributes = TRUE)) 204s + } 204s + 204s + # single-attribute, single raster objects: 204s + tif1 = paste0(tempfile(), ".tif") 204s + write_stars(xm[1,,,1], "x.tif") 204s + xp = read_stars("x.tif", proxy = TRUE) 204s + xm = read_stars("x.tif", proxy = FALSE) 204s + em = st_extract(xm, pts) 204s + if (utils::packageVersion("sf") >= "0.9-7") { 204s + ep = st_extract(xp, pts) 204s + print(all.equal(ep, em, check.attributes = TRUE)) 204s + } 204s + 204s + # multiple-file attributes: 204s + x = c( 204s + "avhrr-only-v2.19810901.nc", 204s + "avhrr-only-v2.19810902.nc", 204s + "avhrr-only-v2.19810903.nc", 204s + "avhrr-only-v2.19810904.nc", 204s + "avhrr-only-v2.19810905.nc", 204s + "avhrr-only-v2.19810906.nc", 204s + "avhrr-only-v2.19810907.nc", 204s + "avhrr-only-v2.19810908.nc", 204s + "avhrr-only-v2.19810909.nc" 204s + ) 204s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 204s + if (!identical(file_list, "")) { 204s + y = read_stars(file_list, quiet = TRUE) 204s + print(y) 204s + st_crs(y) = "OGC:CRS84" 204s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 204s + em = st_extract(y, pts) 204s + 204s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 204s + print(y) 204s + st_crs(y) = "OGC:CRS84" 204s + if (utils::packageVersion("sf") >= "0.9-7") { 204s + ep = st_extract(y, pts) 204s + print(all.equal(em, ep)) 204s + } 204s + } 204s + 204s + # nearest & bilinear comparison: 204s + if (utils::packageVersion("sf") >= "0.9-7") { 204s + set.seed(12331) 204s + s = st_as_stars(matrix(rnorm(16), 4)) 204s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 204s + s1 = st_extract(s, pts, bilinear = FALSE) 204s + s2 = st_extract(s, pts, bilinear = TRUE) 204s + s1$s2 = s2[[1]] 204s + names(s1)[c(1,3)] = c("nearest", "bilinear") 204s + print(s1[sample(10000, 5),]) 204s + } 204s + } 204s > 204s BEGIN TEST gridtypes.R 204s 204s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 204s Copyright (C) 2025 The R Foundation for Statistical Computing 204s Platform: x86_64-pc-linux-gnu 204s 204s R is free software and comes with ABSOLUTELY NO WARRANTY. 204s You are welcome to redistribute it under certain conditions. 204s Type 'license()' or 'licence()' for distribution details. 204s 204s R is a collaborative project with many contributors. 204s Type 'contributors()' for more information and 204s 'citation()' on how to cite R or R packages in publications. 204s 204s Type 'demo()' for some demos, 'help()' for on-line help, or 204s 'help.start()' for an HTML browser interface to help. 204s Type 'q()' to quit R. 204s 204s > suppressPackageStartupMessages(library(stars)) 204s > 204s > # regular, but not spatial: 204s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values 204s a 1 3 1 1 FALSE NULL 204s b 1 3 1 1 FALSE NULL 204s band 1 2 NA NA FALSE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s a b band X 204s 1 1 1 foo 1 204s 2 2 1 foo 2 204s 3 3 1 foo 3 204s 4 1 2 foo 4 204s > try(x <- st_bbox(st)) # error 204s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 204s dimensions table does not have x & y, nor an sfc dimension 204s > 204s > # regular, geotransform: 204s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values x/y 204s x 1 3 1 1 FALSE NULL [x] 204s y 1 3 1 1 FALSE NULL [y] 204s band 1 2 NA NA FALSE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y band X 204s 1 1.5 1.5 foo 1 204s 2 2.5 1.5 foo 2 204s 3 3.5 1.5 foo 3 204s 4 1.5 2.5 foo 4 204s > as.data.frame(st, add_max=TRUE)[1:4,] 204s x y band x_max y_max X 204s 1 1 1 foo 2 2 1 204s 2 2 1 foo 3 2 2 204s 3 3 1 foo 4 2 3 204s 4 1 2 foo 2 3 4 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 1 1 4 4 204s > 204s > # rectilinear with offset given: 204s > xd = c(1, 2, 4) 204s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values x/y 204s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 204s y 1 3 1 1 FALSE NULL [y] 204s band 1 2 NA NA FALSE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y band X 204s 1 1.5 1.5 foo 1 204s 2 3.0 1.5 foo 2 204s 3 5.0 1.5 foo 3 204s 4 1.5 2.5 foo 4 204s > as.data.frame(st, add_max=TRUE)[1:4,] 204s x y band x_max y_max X 204s 1 1 1 foo 2 2 1 204s 2 2 1 foo 4 2 2 204s 3 4 1 foo 6 2 3 204s 4 1 2 foo 2 3 4 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 1 1 6 4 204s > 204s > # rectilinear with midpoints given: 204s > xd = c(1, 2, 4) 204s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values x/y 204s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 204s y 1 3 0.5 1 FALSE NULL [y] 204s band 1 2 NA NA FALSE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y band X 204s 1 1.00 1 foo 1 204s 2 2.25 1 foo 2 204s 3 4.00 1 foo 3 204s 4 1.00 2 foo 4 204s > as.data.frame(st, add_max=TRUE)[1:4,] 204s x y band x_max y_max X 204s 1 0.5 0.5 foo 1.5 1.5 1 204s 2 1.5 0.5 foo 3.0 1.5 2 204s 3 3.0 0.5 foo 5.0 1.5 3 204s 4 0.5 1.5 foo 1.5 2.5 4 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 0.5 0.5 5.0 3.5 204s > 204s > # rectilinear with midpoints given, point support 204s > xd = c(1, 2, 4) 204s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values x/y 204s x 1 3 NA NA TRUE 1, 2, 4 [x] 204s y 1 3 0.5 1 TRUE NULL [y] 204s band 1 2 NA NA TRUE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y band X 204s 1 1 1 foo 1 204s 2 2 1 foo 2 204s 3 4 1 foo 3 204s 4 1 2 foo 4 204s > as.data.frame(st, add_max=TRUE)[1:4,] 204s x y band x_max y_max X 204s 1 1 0.5 foo 1 1.5 1 204s 2 2 0.5 foo 2 1.5 2 204s 3 4 0.5 foo 4 1.5 3 204s 4 1 1.5 foo 1 2.5 4 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 1.0 0.5 4.0 3.5 204s > 204s > # rectilinear with start/end given: 204s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 204s > xd = c(1, 2, 4, 8) # one more than dim of the data array 204s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values x/y 204s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 204s y 1 3 1 1 FALSE NULL [y] 204s band 1 2 NA NA FALSE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y band X 204s 1 1.5 1.5 foo 1 204s 2 3.0 1.5 foo 2 204s 3 6.0 1.5 foo 3 204s 4 1.5 2.5 foo 4 204s > as.data.frame(st, add_max=TRUE)[1:4,] 204s x y band x_max y_max X 204s 1 1 1 foo 2 2 1 204s 2 2 1 foo 4 2 2 204s 3 4 1 foo 8 2 3 204s 4 1 2 foo 2 3 4 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 1 1 8 4 204s > 204s > # with sfc: 204s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 204s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values 204s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 204s y 1 3 1 1 FALSE NULL 204s band 1 2 NA NA FALSE foo, bar 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y band X 204s 1 POINT (0 1) 1 foo 1 204s 2 POINT (2 1) 1 foo 2 204s 3 POINT (4 3) 1 foo 3 204s 4 POINT (0 1) 2 foo 4 204s > st_as_sf(st, long = TRUE)[1:4,] 204s Simple feature collection with 4 features and 3 fields 204s Geometry type: POINT 204s Dimension: XY 204s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 204s CRS: NA 204s y band X x 204s 1 1 foo 1 POINT (0 1) 204s 2 1 foo 2 POINT (2 1) 204s 3 1 foo 3 POINT (4 3) 204s 4 2 foo 4 POINT (0 1) 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 0 1 4 3 204s > 204s > # rotated/sheared: 204s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 204s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 204s stars object with 3 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 5.25 9.5 9.5 13.75 18 204s dimension(s): 204s from to offset delta point values x/y 204s x 1 3 1 1 FALSE NULL [x] 204s y 1 3 1 1 FALSE NULL [y] 204s band 1 2 NA NA FALSE foo, bar 204s sheared raster with parameters: 0.2 -0.2 204s > as.data.frame(st, add_max=FALSE)[1:4,] 204s x y X 204s 1 1.6 1.4 1 204s 2 2.6 1.2 2 204s 3 3.6 1.0 3 204s 4 1.8 2.4 4 204s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 204s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 204s add_max will not work for rotated/shared rasters 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 1.0 0.4 4.6 4.0 204s > 204s > # curvilinear: 204s > set.seed(13531) 204s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 204s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 204s > ll = setNames(c(lon, lat), c("lon", "lat")) 204s > d = st_dimensions(lon = 1:3, lat = 1:3) 204s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 204s > (st = st_as_stars(a, curvilinear = ll)) 204s stars object with 2 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s X 1 3 5 5 7 9 204s dimension(s): 204s from to refsys point values x/y 204s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 204s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 204s curvilinear grid 204s > as.data.frame(st) 204s lon lat X 204s 1 0.89 0.250 1 204s 2 0.64 0.510 2 204s 3 0.30 0.670 3 204s 4 0.69 0.890 4 204s 5 0.47 0.890 5 204s 6 0.26 0.190 6 204s 7 0.57 0.021 7 204s 8 0.27 0.220 8 204s 9 0.03 0.340 9 204s > st_bbox(st) 204s xmin ymin xmax ymax 204s 0.030 0.021 0.890 0.890 204s > 204s > # time regular: 204s > t = as.Date("2019-01-20") + 0:3 204s > d = st_dimensions(t, sfc) 204s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 204s stars object with 2 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s a 1 3.75 6.5 6.5 9.25 12 204s dimension(s): 204s from to offset delta refsys point values 204s X1 1 4 2019-01-20 1 days Date FALSE NULL 204s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 204s > as.data.frame(st) 204s X1 X2 a 204s 1 2019-01-20 POINT (0 1) 1 204s 2 2019-01-21 POINT (0 1) 2 204s 3 2019-01-22 POINT (0 1) 3 204s 4 2019-01-23 POINT (0 1) 4 204s 5 2019-01-20 POINT (2 1) 5 204s 6 2019-01-21 POINT (2 1) 6 204s 7 2019-01-22 POINT (2 1) 7 204s 8 2019-01-23 POINT (2 1) 8 204s 9 2019-01-20 POINT (4 3) 9 204s 10 2019-01-21 POINT (4 3) 10 204s 11 2019-01-22 POINT (4 3) 11 204s 12 2019-01-23 POINT (4 3) 12 204s > 204s > # time, rectilinear 204s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 204s > d = st_dimensions(t, sfc) 204s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 204s stars object with 2 dimensions and 1 attribute 204s attribute(s): 204s Min. 1st Qu. Median Mean 3rd Qu. Max. 204s a 1 3.75 6.5 6.5 9.25 12 204s dimension(s): 204s from to refsys point values 204s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 204s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 204s > as.data.frame(st) 204s X1 X2 a 204s 1 2019-01-20 POINT (0 1) 1 204s 2 2019-01-22 POINT (0 1) 2 204s 3 2019-01-23 POINT (0 1) 3 204s 4 2019-01-30 POINT (0 1) 4 204s 5 2019-01-20 POINT (2 1) 5 204s 6 2019-01-22 POINT (2 1) 6 204s 7 2019-01-23 POINT (2 1) 7 204s 8 2019-01-30 POINT (2 1) 8 204s 9 2019-01-20 POINT (4 3) 9 204s 10 2019-01-22 POINT (4 3) 10 204s 11 2019-01-23 POINT (4 3) 11 204s 12 2019-01-30 POINT (4 3) 12 204s > 204s BEGIN TEST mdim.R 204s 204s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 204s Copyright (C) 2025 The R Foundation for Statistical Computing 204s Platform: x86_64-pc-linux-gnu 204s 204s R is free software and comes with ABSOLUTELY NO WARRANTY. 204s You are welcome to redistribute it under certain conditions. 204s Type 'license()' or 'licence()' for distribution details. 204s 204s R is a collaborative project with many contributors. 204s Type 'contributors()' for more information and 204s 'citation()' on how to cite R or R packages in publications. 204s 204s Type 'demo()' for some demos, 'help()' for on-line help, or 204s 'help.start()' for an HTML browser interface to help. 204s Type 'q()' to quit R. 204s 204s > Sys.setenv(TZ="") 204s > suppressPackageStartupMessages(library(stars)) 204s > matrix(1:4,2) 204s [,1] [,2] 204s [1,] 1 3 204s [2,] 2 4 204s > m = matrix(1:4,2) 204s > s = st_as_stars(m) 205s > 205s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 205s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 205s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 205s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 205s > s = st_set_dimensions(s, 2, tm) 205s > f = tempfile(fileext = ".nc") 205s > write_mdim(s, f, as_float = FALSE) 205s > s2 = read_mdim(f) 205s Warning messages: 205s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 205s GDAL Error 6: SetIndexingVariable() not implemented 205s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 205s GDAL Error 6: SetIndexingVariable() not implemented 205s > #print(s2) 205s > print(all.equal(s, s2, check.attributes = FALSE)) 205s [1] TRUE 205s > print(all.equal(s, s2)) 205s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 205s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 205s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 205s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 205s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 205s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 205s > 205s > st_crs(sfc) = st_crs(s2) 205s > st_crs(s) = st_crs(s2) 205s > tm = as.Date("2023-02-25") + 0:1 205s > sd = st_set_dimensions(s, 2, tm) 205s > print(sd) 205s stars object with 2 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s A1 1 1.75 2.5 2.5 3.25 4 205s dimension(s): 205s from to offset delta refsys point values 205s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 205s X2 1 2 2023-02-25 1 days Date FALSE NULL 205s > sd = st_set_dimensions(sd, 1, sfc) 205s > print(sd) 205s stars object with 2 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s A1 1 1.75 2.5 2.5 3.25 4 205s dimension(s): 205s from to offset delta refsys point values 205s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 205s X2 1 2 2023-02-25 1 days Date FALSE NULL 205s > f = tempfile(fileext = ".nc") 205s > write_mdim(sd, f) 205s > sd2 = read_mdim(f) 205s Warning messages: 205s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 205s GDAL Error 6: SetIndexingVariable() not implemented 205s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 205s GDAL Error 6: SetIndexingVariable() not implemented 205s > print(sd2) 205s stars object with 2 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s A1 1 1.75 2.5 2.5 3.25 4 205s dimension(s): 205s from to offset delta refsys point values 205s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 205s X2 1 2 2023-02-25 1 days Date NA NULL 205s > print(all.equal(sd, sd2, check.attributes = FALSE)) 205s [1] TRUE 205s > print(all.equal(sd, sd2)) 205s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 205s > # if (.Platform$OS.type == "unix") { 205s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 205s > # } 205s > 205s BEGIN TEST nc.R 205s 205s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 205s Copyright (C) 2025 The R Foundation for Statistical Computing 205s Platform: x86_64-pc-linux-gnu 205s 205s R is free software and comes with ABSOLUTELY NO WARRANTY. 205s You are welcome to redistribute it under certain conditions. 205s Type 'license()' or 'licence()' for distribution details. 205s 205s R is a collaborative project with many contributors. 205s Type 'contributors()' for more information and 205s 'citation()' on how to cite R or R packages in publications. 205s 205s Type 'demo()' for some demos, 'help()' for on-line help, or 205s 'help.start()' for an HTML browser interface to help. 205s Type 'q()' to quit R. 205s 205s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 205s > suppressPackageStartupMessages(library(sf)) 205s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 205s > m = st_set_geometry(nc, NULL) 205s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 205s > dim(n) = c(county = 100, var = 3, year = 2) 205s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 205s > suppressPackageStartupMessages(library(stars)) 205s > (st = st_as_stars(pop = n)) 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 8 538 1657.032 1784 30757 205s dimension(s): 205s from to values 205s county 1 100 Ashe,...,Brunswick 205s var 1 3 BIR , SID , NWBIR 205s year 1 2 1974, 1979 205s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 205s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 8 538 1657.032 1784 30757 205s dimension(s): 205s from to refsys point 205s geometries 1 100 NAD27 FALSE 205s var 1 3 NA NA 205s year 1 2 NA NA 205s values 205s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s var BIR , SID , NWBIR 205s year 1974, 1979 205s > foo 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 8 538 1657.032 1784 30757 205s dimension(s): 205s from to refsys point 205s county 1 100 NAD27 FALSE 205s var 1 3 NA NA 205s year 1 2 NA NA 205s values 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s var BIR , SID , NWBIR 205s year 1974, 1979 205s > st_bbox(foo) 205s xmin ymin xmax ymax 205s -84.32385 33.88199 -75.45698 36.58965 205s > (x = st_as_sf(foo)) 205s Simple feature collection with 100 features and 6 fields 205s Geometry type: MULTIPOLYGON 205s Dimension: XY 205s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 205s Geodetic CRS: NAD27 205s First 10 features: 205s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 205s 1 1091 1 10 1364 0 19 205s 2 487 0 10 542 3 12 205s 3 3188 5 208 3616 6 260 205s 4 508 1 123 830 2 145 205s 5 1421 9 1066 1606 3 1197 205s 6 1452 7 954 1838 5 1237 205s 7 286 0 115 350 2 139 205s 8 420 0 254 594 2 371 205s 9 968 4 748 1190 2 844 205s 10 1612 1 160 2038 5 176 205s county 205s 1 MULTIPOLYGON (((-81.47276 3... 205s 2 MULTIPOLYGON (((-81.23989 3... 205s 3 MULTIPOLYGON (((-80.45634 3... 205s 4 MULTIPOLYGON (((-76.00897 3... 205s 5 MULTIPOLYGON (((-77.21767 3... 205s 6 MULTIPOLYGON (((-76.74506 3... 205s 7 MULTIPOLYGON (((-76.00897 3... 205s 8 MULTIPOLYGON (((-76.56251 3... 205s 9 MULTIPOLYGON (((-78.30876 3... 205s 10 MULTIPOLYGON (((-80.02567 3... 205s > frac = function(x) x[2] / x[1] 205s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 205s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 205s > st_apply(foo, c(1,3), frac) 205s stars object with 2 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 205s dimension(s): 205s from to refsys point 205s county 1 100 NAD27 FALSE 205s year 1 2 NA NA 205s values 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s year 1974, 1979 205s > st_apply(foo, c(1,3), frac2) 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 205s dimension(s): 205s from to refsys point 205s frac2 1 2 NA NA 205s county 1 100 NAD27 FALSE 205s year 1 2 NA NA 205s values 205s frac2 sidsr, nwbr 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s year 1974, 1979 205s > st_apply(foo, c(1,3), frac2an) 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 205s dimension(s): 205s from to refsys point 205s frac2an 1 2 NA NA 205s county 1 100 NAD27 FALSE 205s year 1 2 NA NA 205s values 205s frac2an NULL 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s year 1974, 1979 205s > library(abind) 205s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 205s dimension(s): 205s from to refsys point 205s county 1 100 NAD27 FALSE 205s year 1 2 NA NA 205s frac2 1 2 NA NA 205s values 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s year 1974, 1979 205s frac2 sidsr, nwbr 205s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 205s > all.equal(st_dimensions(x), st_dimensions(y)) 205s [1] TRUE 205s > 205s > split(foo, 2) 205s stars object with 2 dimensions and 3 attributes 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s BIR 248 1176.75 2265 3761.770 4450.75 30757 205s SID 0 2.00 5 7.515 9.00 57 205s NWBIR 1 206.00 742 1201.810 1315.75 11631 205s dimension(s): 205s from to refsys point 205s county 1 100 NAD27 FALSE 205s year 1 2 NA NA 205s values 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s year 1974, 1979 205s > split(foo, 3) 205s stars object with 2 dimensions and 2 attributes 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s 1974 0 8 501.5 1452.367 1580.50 21588 205s 1979 0 9 614.0 1861.697 2040.25 30757 205s dimension(s): 205s from to refsys point 205s county 1 100 NAD27 FALSE 205s var 1 3 NA NA 205s values 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s var BIR , SID , NWBIR 205s > 205s > st_crs(foo) 205s Coordinate Reference System: 205s User input: NAD27 205s wkt: 205s GEOGCRS["NAD27", 205s DATUM["North American Datum 1927", 205s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 205s LENGTHUNIT["metre",1]]], 205s PRIMEM["Greenwich",0, 205s ANGLEUNIT["degree",0.0174532925199433]], 205s CS[ellipsoidal,2], 205s AXIS["geodetic latitude (Lat)",north, 205s ORDER[1], 205s ANGLEUNIT["degree",0.0174532925199433]], 205s AXIS["geodetic longitude (Lon)",east, 205s ORDER[2], 205s ANGLEUNIT["degree",0.0174532925199433]], 205s USAGE[ 205s SCOPE["Geodesy."], 205s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 205s BBOX[7.15,167.65,83.17,-47.74]], 205s ID["EPSG",4267]] 205s > plot(foo) 205s > 205s > # subset vector cube: 205s > foo[nc[1]] 205s stars object with 3 dimensions and 1 attribute 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. 205s pop 0 8 538 1657.032 1784 30757 205s dimension(s): 205s from to refsys point 205s county 1 100 NAD27 FALSE 205s var 1 3 NA NA 205s year 1 2 NA NA 205s values 205s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 205s var BIR , SID , NWBIR 205s year 1974, 1979 205s > 205s BEGIN TEST plot.R 205s 205s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 205s Copyright (C) 2025 The R Foundation for Statistical Computing 205s Platform: x86_64-pc-linux-gnu 205s 205s R is free software and comes with ABSOLUTELY NO WARRANTY. 205s You are welcome to redistribute it under certain conditions. 205s Type 'license()' or 'licence()' for distribution details. 205s 205s R is a collaborative project with many contributors. 205s Type 'contributors()' for more information and 205s 'citation()' on how to cite R or R packages in publications. 205s 205s Type 'demo()' for some demos, 'help()' for on-line help, or 205s 'help.start()' for an HTML browser interface to help. 205s Type 'q()' to quit R. 205s 205s > suppressPackageStartupMessages(library(stars)) 206s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 206s + data(air) # this loads several datasets in .GlobalEnv 206s + dim(air) 206s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 206s + aq = st_as_stars(list(PM10 = air), dimensions = d) 206s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 206s + st_geometry(aq) 206s + } 206s Geometry set for 70 features 206s Geometry type: POINT 206s Dimension: XY 206s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 206s POINT (9.585911 53.67057) 206s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 206s First 5 geometries: 206s > 206s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 206s POINT (9.68503 53.52418) 206s POINT (9.791584 54.07312) 206s POINT (13.64701 52.44775) 206s POINT (13.29635 52.65315) 206s > if (csv != "") { 206s + rgb = read.csv(csv, header = TRUE, sep = ";") 206s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 206s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 206s + } 206s > 206s > # https://github.com/r-spatial/stars/issues/233 : 206s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 206s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 206s > plot(output) 206s > 206s Warning message: 206s In plot.stars(output) : 206s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 207s BEGIN TEST predict.R 207s 207s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 207s Copyright (C) 2025 The R Foundation for Statistical Computing 207s Platform: x86_64-pc-linux-gnu 207s 207s R is free software and comes with ABSOLUTELY NO WARRANTY. 207s You are welcome to redistribute it under certain conditions. 207s Type 'license()' or 'licence()' for distribution details. 207s 207s R is a collaborative project with many contributors. 207s Type 'contributors()' for more information and 207s 'citation()' on how to cite R or R packages in publications. 207s 207s Type 'demo()' for some demos, 'help()' for on-line help, or 207s 'help.start()' for an HTML browser interface to help. 207s Type 'q()' to quit R. 207s 207s > suppressPackageStartupMessages(library(stars)) 207s > # predict: 207s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 207s > (x = read_stars(tif)) 207s stars object with 3 dimensions and 1 attribute 207s attribute(s): 207s Min. 1st Qu. Median Mean 3rd Qu. Max. 207s L7_ETMs.tif 1 54 69 68.91242 86 255 207s dimension(s): 207s from to offset delta refsys point x/y 207s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 207s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 207s band 1 6 NA NA NA NA 207s > st_crs(x) = st_crs(x) # cleans trailing space 207s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 207s > x = predict(x, model) 208s > 208s > (y = read_stars(tif, proxy = TRUE)) 208s stars_proxy object with 1 attribute in 1 file(s): 208s $L7_ETMs.tif 208s [1] "[...]/L7_ETMs.tif" 208s 208s dimension(s): 208s from to offset delta refsys point x/y 208s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 208s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 208s band 1 6 NA NA NA NA 208s > (yp = predict(y, model)) 208s stars_proxy object with 1 attribute in 1 file(s): 208s $L7_ETMs.tif 208s [1] "[...]/L7_ETMs.tif" 208s 208s dimension(s): 208s from to offset delta refsys point x/y 208s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 208s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 208s band 1 6 NA NA NA NA 208s call_list: 208s [[1]] 208s predict(object = object, model = model) 208s attr(,".Environment") 208s 208s 208s This object has pending lazy operations: dimensions as printed may not reflect this. 208s > all.equal(x, st_as_stars(yp)) 208s [1] TRUE 208s > 208s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 208s > (y_spl = split(yy, 3)) 208s stars_proxy object with 1 attribute in 1 file(s): 208s $L7_ETMs.tif 208s [1] "[...]/L7_ETMs.tif" 208s 208s dimension(s): 208s from to offset delta refsys point values 208s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 208s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 208s band 1 6 NA NA NA NA band1,...,band6 208s x/y 208s x [x] 208s y [y] 208s band 208s call_list: 208s [[1]] 208s split(x = x, 3) 208s attr(,".Environment") 208s 208s 208s This object has pending lazy operations: dimensions as printed may not reflect this. 208s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 208s x y band1 band2 band3 band4 band5 band6 208s 1 288790.5 9120747 69 56 46 79 86 46 208s 2 288819.0 9120747 69 57 49 75 88 49 208s 3 288847.5 9120747 63 52 45 66 75 41 208s > 208s BEGIN TEST proxy.R 208s 208s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 208s Copyright (C) 2025 The R Foundation for Statistical Computing 208s Platform: x86_64-pc-linux-gnu 208s 208s R is free software and comes with ABSOLUTELY NO WARRANTY. 208s You are welcome to redistribute it under certain conditions. 208s Type 'license()' or 'licence()' for distribution details. 208s 208s R is a collaborative project with many contributors. 208s Type 'contributors()' for more information and 208s 'citation()' on how to cite R or R packages in publications. 208s 208s Type 'demo()' for some demos, 'help()' for on-line help, or 208s 'help.start()' for an HTML browser interface to help. 208s Type 'q()' to quit R. 208s 208s > Sys.setenv(TZ="UTC") 208s > suppressPackageStartupMessages(library(sf)) 208s > suppressPackageStartupMessages(library(stars)) 209s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 209s > (r = read_stars(tif, proxy = TRUE)) 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s > if (interactive()) { 209s + plot(r) 209s + } 209s > dim(r) 209s x y band 209s 349 352 6 209s > r[,,,2:3] 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 2 3 NA NA NA NA 209s > r+r 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s call_list: 209s [[1]] 209s e1 + e2 209s attr(,".Environment") 209s 209s 209s This object has pending lazy operations: dimensions as printed may not reflect this. 209s > st_as_stars(sin(r), downsample = 2) 209s stars object with 3 dimensions and 1 attribute 209s attribute(s): 209s Min. 1st Qu. Median Mean 3rd Qu. Max. 209s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s > aperm(r, c(3,2,1)) 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s call_list: 209s [[1]] 209s aperm(a = a, perm = perm) 209s attr(,".Environment") 209s 209s 209s This object has pending lazy operations: dimensions as printed may not reflect this. 209s > if (interactive()) { 209s + plot(r) 209s + } 209s > (xx = c(r,r)) 209s stars_proxy object with 2 attributes in 2 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s > st_redimension(xx) 209s stars_proxy object with 1 attribute in 2 file(s): 209s $L7_ETMs.tif.L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 209s band 1 6 NA NA NA NA 209s new_dim 1 2 NA NA NA NA 209s values x/y 209s x NULL [x] 209s y NULL [y] 209s band NULL 209s new_dim L7_ETMs.tif, L7_ETMs.tif 209s > st_as_stars(r) 209s stars object with 3 dimensions and 1 attribute 209s attribute(s): 209s Min. 1st Qu. Median Mean 3rd Qu. Max. 209s L7_ETMs.tif 1 54 69 68.91242 86 255 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s > (y = st_apply(r, 1:2, max)) 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s call_list: 209s [[1]] 209s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 209s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 209s attr(,".Environment") 209s 209s 209s This object has pending lazy operations: dimensions as printed may not reflect this. 209s > (yy = st_as_stars(y, downsample = 1)) 209s stars object with 2 dimensions and 1 attribute 209s attribute(s): 209s Min. 1st Qu. Median Mean 3rd Qu. Max. 209s max 55 85 96 99.38568 113 255 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s > (y = adrop(st_apply(r, c("x", "y"), max))) 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s call_list: 209s [[1]] 209s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 209s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 209s attr(,".Environment") 209s 209s 209s [[2]] 209s adrop(x = x, drop = drop) 209s attr(,".Environment") 209s 209s 209s This object has pending lazy operations: dimensions as printed may not reflect this. 209s > (yy = st_as_stars(y, downsample = 1)) 209s stars object with 2 dimensions and 1 attribute 209s attribute(s): 209s Min. 1st Qu. Median Mean 3rd Qu. Max. 209s max 55 85 96 99.38568 113 255 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s > plot(yy) 209s > (y = adrop(st_apply(r, c("x", "band"), max))) 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s call_list: 209s [[1]] 209s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 209s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 209s attr(,".Environment") 209s 209s 209s [[2]] 209s adrop(x = x, drop = drop) 209s attr(,".Environment") 209s 209s 209s This object has pending lazy operations: dimensions as printed may not reflect this. 209s > (yy = st_as_stars(y, downsample = 1)) 209s stars object with 2 dimensions and 1 attribute 209s attribute(s): 209s Min. 1st Qu. Median Mean 3rd Qu. Max. 209s max 77 111 133 137.8505 157 255 209s dimension(s): 209s Warning message: 209s In FUN(X[[i]], ...) : 209s st_apply on x/y dimensions applied to downsampled image(s) 209s from to offset delta refsys point 209s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 209s band 1 6 NA NA NA NA 209s > rm(yy) 209s > 209s > (xx = c(r,r)) 209s stars_proxy object with 2 attributes in 2 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s > names(xx) = c("a", "b") 209s > xx["a"] 209s stars_proxy object with 1 attribute in 1 file(s): 209s $a 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 209s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 209s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 209s + crs = st_crs(r)) 209s > r = r[buf] # crops 209s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 209s > 209s > # c: 209s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 209s > if (FALSE && f != "") { 209s + files = c("avhrr-only-v2.19810901.nc", 209s + "avhrr-only-v2.19810902.nc", 209s + "avhrr-only-v2.19810903.nc", 209s + "avhrr-only-v2.19810904.nc", 209s + "avhrr-only-v2.19810905.nc", 209s + "avhrr-only-v2.19810906.nc", 209s + "avhrr-only-v2.19810907.nc", 209s + "avhrr-only-v2.19810908.nc", 209s + "avhrr-only-v2.19810909.nc") 209s + l = list() 209s + for (f in files) { 209s + from = system.file(paste0("netcdf/", f), package = "starsdata") 209s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 209s + } 209s + ret = do.call(c, l) 209s + print(ret) 209s + all = system.file(paste0("netcdf/", files), package = "starsdata") 209s + ret = read_stars(all, sub = c("sst", "anom")) 209s + print(ret) 209s + print(st_redimension(ret)) # collapse the two attributes into new dimension 209s + 209s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 209s + #print(ret) 209s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 209s + #print(ret) 209s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 209s + print(ret) 209s + } 209s > 209s > # demonstrate that environments work: 209s > x = read_stars(tif, proxy = TRUE) 209s > f = function(x) { 209s + g = function(xx) { 209s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 209s + st_apply(xx, 1:2, ndvi) 209s + } 209s + g(x) 209s + } 209s > (x = f(x)) 209s stars_proxy object with 1 attribute in 1 file(s): 209s $L7_ETMs.tif 209s [1] "[...]/L7_ETMs.tif" 209s 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s band 1 6 NA NA NA NA 209s call_list: 209s [[1]] 209s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 209s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 209s attr(,".Environment") 209s 209s 209s This object has pending lazy operations: dimensions as printed may not reflect this. 209s > st_as_stars(x) 209s stars object with 2 dimensions and 1 attribute 209s attribute(s): 209s Min. 1st Qu. Median Mean 3rd Qu. Max. 209s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 209s dimension(s): 209s from to offset delta refsys point x/y 209s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 209s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 209s > 209s BEGIN TEST raster.R 209s 209s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 209s Copyright (C) 2025 The R Foundation for Statistical Computing 209s Platform: x86_64-pc-linux-gnu 209s 209s R is free software and comes with ABSOLUTELY NO WARRANTY. 209s You are welcome to redistribute it under certain conditions. 209s Type 'license()' or 'licence()' for distribution details. 209s 209s R is a collaborative project with many contributors. 209s Type 'contributors()' for more information and 209s 'citation()' on how to cite R or R packages in publications. 209s 209s Type 'demo()' for some demos, 'help()' for on-line help, or 209s 'help.start()' for an HTML browser interface to help. 209s Type 'q()' to quit R. 209s 209s > options(rgdal_show_exportToProj4_warnings = "none") 209s > suppressPackageStartupMessages(library(stars)) 210s > 210s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 210s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 210s + 210s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 210s + (x = read_stars(tif)) 210s + (r = as(x, "Raster")) 210s + (y = st_as_stars(r)) 210s + 210s + # single band: 210s + x = adrop(x[,,,1]) 210s + r = as(x, "Raster") 210s + (y = st_as_stars(r)) 210s + 210s + # proxy: 210s + (x = read_stars(tif, proxy = TRUE)) 210s + (r = as(x, "Raster")) 210s + (y = st_as_stars(r)) 210s + (y2 = st_as_stars(r, proxy = TRUE)) 210s + } 213s stars_proxy object with 1 attribute in 1 file(s): 213s $L7_ETMs.tif 213s [1] "[...]/L7_ETMs.tif" 213s 213s dimension(s): 213s from to offset delta refsys point x/y 213s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 213s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 213s band 1 6 NA NA NA NA 213s > 213s > if (require(terra, quietly = TRUE)) { 213s + ## terra ------------- 213s + stopifnot(require(terra)) 213s + (x = read_stars(tif)) 213s + (r = as(x, "SpatRaster")) 213s + (y = st_as_stars(r)) 213s + 213s + # single band: 213s + x = adrop(x[,,,1]) 213s + r = as(x, "SpatRaster") 213s + (y = st_as_stars(r)) 213s + 213s + # proxy: 213s + (x = read_stars(tif, proxy = TRUE)) 213s + (r = as(x, "SpatRaster")) 213s + (y = st_as_stars(r)) 213s + (y2 = st_as_stars(r, proxy = TRUE)) 213s + 213s + f = system.file("tif/lc.tif", package = "stars") 213s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 213s + levels(lc[[1]]) 213s + r = rast(lc) 213s + e = attr(lc[[1]], "exclude") 213s + 213s + if (packageVersion("terra") >= "1.5.48") { 213s + 213s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 213s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 213s + 213s + r<- rast(nrow=10, ncol=10) 213s + set.seed(5) 213s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 213s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 213s + 213s + r2<- rast(nrow=10, ncol=10) 213s + set.seed(6) 213s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 213s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 213s + 213s + r3<- c(r,r2) 213s + names(r3)<- c("lyr.1", "lyr.2") 213s + 213s + r3_stars<- st_as_stars(r3) 213s + 213s + st_redimension(r3_stars) |> print() 213s + rast(r3_stars) |> levels() |> print() 213s + 213s + m = matrix(1:121, 11, 11) 213s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 213s + s = st_as_stars(bb, values = m) 213s + r = rast(s) 213s + aggregate(r, 2) |> st_as_stars() -> r.s 213s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 213s + } 213s + } 213s [1] TRUE 213s [1] TRUE 213s stars object with 3 dimensions and 1 attribute 213s attribute(s): 213s lyr.1.lyr.2 213s c1:34 213s c2:32 213s c3:34 213s x1:28 213s x2:37 213s x3:35 213s dimension(s): 213s from to offset delta refsys values x/y 213s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 213s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 213s new_dim 1 2 NA NA NA lyr.1, lyr.2 213s [[1]] 213s IDs categories 213s 1 1 c1 213s 2 2 c2 213s 3 3 c3 213s 213s [[2]] 213s IDs categories 213s 1 0 x1 213s 2 2 x2 213s 3 3 x3 213s 213s > 213s > 213s BEGIN TEST rasterize.R 213s 213s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 213s Copyright (C) 2025 The R Foundation for Statistical Computing 213s Platform: x86_64-pc-linux-gnu 213s 213s R is free software and comes with ABSOLUTELY NO WARRANTY. 213s You are welcome to redistribute it under certain conditions. 213s Type 'license()' or 'licence()' for distribution details. 213s 213s R is a collaborative project with many contributors. 213s Type 'contributors()' for more information and 213s 'citation()' on how to cite R or R packages in publications. 213s 213s Type 'demo()' for some demos, 'help()' for on-line help, or 213s 'help.start()' for an HTML browser interface to help. 213s Type 'q()' to quit R. 213s 213s > suppressPackageStartupMessages(library(stars)) 214s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 214s > (x = st_rasterize(nc)) # default grid: 214s stars object with 2 dimensions and 12 attributes 214s attribute(s): 214s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 214s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 214s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 214s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 214s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 214s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 214s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 214s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 214s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 214s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 214s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 214s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 214s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 214s dimension(s): 214s from to offset delta refsys point x/y 214s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 214s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 214s > plot(x, axes = TRUE) 214s > # a bit more customized grid: 214s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 214s stars object with 2 dimensions and 12 attributes 214s attribute(s): 214s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 214s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 214s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 214s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 214s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 214s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 214s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 214s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 214s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 214s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 214s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 214s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 214s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 214s dimension(s): 214s from to offset delta refsys point x/y 214s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 214s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 214s > plot(x, axes = TRUE) 214s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 214s Simple feature collection with 2 features and 1 field 214s Geometry type: LINESTRING 214s Dimension: XY 214s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 214s CRS: NA 214s a 214s 1 1 214s 2 2 214s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 214s 1 LINESTRING (0.1 0, 1.1 1) 214s 2 LINESTRING (0 0.05, 1 0.05) 214s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 214s stars object with 2 dimensions and 1 attribute 214s attribute(s): 214s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 214s values NA NA NA NaN NA NA 100 214s dimension(s): 214s from to offset delta x/y 214s x 1 10 0 0.1 [x] 214s y 1 10 1 -0.1 [y] 214s > # the following two plots confirm that (only) the 214s > # upper-left corner is part of the grid cell (when dy is negative), leading 214s > # to a seemingly half-gridcell-shift problem: 214s > ## sf_extSoftVersion()["GDAL"] 214s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 214s > plot(ls, add = TRUE, col = "red") 214s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 214s > plot(ls, add = TRUE, col = "red") 214s > # add lines to existing 0 values, summing values in case of multiple lines: 214s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 214s stars object with 2 dimensions and 1 attribute 214s attribute(s): 214s Min. 1st Qu. Median Mean 3rd Qu. Max. 214s values 0 0 0 0 0 0 214s dimension(s): 214s from to offset delta x/y 214s x 1 10 0 0.1 [x] 214s y 1 10 1 -0.1 [y] 214s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 214s > plot(r, axes = TRUE, reset = FALSE) 214s > plot(ls, add = TRUE, col = "red") 214s > 214s BEGIN TEST rectilinear.R 214s 214s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 214s Copyright (C) 2025 The R Foundation for Statistical Computing 214s Platform: x86_64-pc-linux-gnu 214s 214s R is free software and comes with ABSOLUTELY NO WARRANTY. 214s You are welcome to redistribute it under certain conditions. 214s Type 'license()' or 'licence()' for distribution details. 214s 214s R is a collaborative project with many contributors. 214s Type 'contributors()' for more information and 214s 'citation()' on how to cite R or R packages in publications. 214s 214s Type 'demo()' for some demos, 'help()' for on-line help, or 214s 'help.start()' for an HTML browser interface to help. 214s Type 'q()' to quit R. 214s 214s > suppressPackageStartupMessages(library(stars)) 215s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 215s > x = read_stars(tif) 215s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 215s stars object with 3 dimensions and 1 attribute 215s attribute(s): 215s Min. 1st Qu. Median Mean 3rd Qu. Max. 215s L7_ETMs.tif 1 54 69 68.9915 86 255 215s dimension(s): 215s from to refsys point 215s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 215s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 215s band 1 6 NA NA 215s values x/y 215s x [288790.5,288819),...,[298708.5,298737) [x] 215s y [9120747,9120718),...,[9110743,9110715) [y] 215s band NULL 215s > image(xx) # chooses useRaster itself 215s > # see also tidy.R for a ggplot example, leaving out the row. 215s > 215s > m = matrix(1:16, 4, 4) 215s > x = 1:4 215s > y = 2:5 215s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 215s stars object with 2 dimensions and 1 attribute 215s attribute(s): 215s Min. 1st Qu. Median Mean 3rd Qu. Max. 215s m 1 4.75 8.5 8.5 12.25 16 215s dimension(s): 215s from to offset delta point x/y 215s x 1 4 1 1 FALSE [x] 215s y 1 4 2 1 FALSE [y] 215s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 215s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 215s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 215s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 215s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 215s > 215s > # $<-.stars: 215s > st$foo = st$m * 2 215s > st 215s stars object with 2 dimensions and 2 attributes 215s attribute(s): 215s Min. 1st Qu. Median Mean 3rd Qu. Max. 215s m 1 4.75 8.5 8.5 12.25 16 215s foo 2 9.50 17.0 17.0 24.50 32 215s dimension(s): 215s from to point values x/y 215s x 1 4 FALSE [1,2),...,[4,6) [x] 215s y 1 4 FALSE [2,3),...,[5,8) [y] 215s > 215s > # st_as_sf: 215s > 215s > if (utils::packageVersion("sf") > "0.7.2") { 215s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 215s + } 215s > 215s > image(st, text_values = TRUE, axes = TRUE) 215s > 215s BEGIN TEST redimension.R 215s 215s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 215s Copyright (C) 2025 The R Foundation for Statistical Computing 215s Platform: x86_64-pc-linux-gnu 215s 215s R is free software and comes with ABSOLUTELY NO WARRANTY. 215s You are welcome to redistribute it under certain conditions. 215s Type 'license()' or 'licence()' for distribution details. 215s 215s R is a collaborative project with many contributors. 215s Type 'contributors()' for more information and 215s 'citation()' on how to cite R or R packages in publications. 215s 215s Type 'demo()' for some demos, 'help()' for on-line help, or 215s 'help.start()' for an HTML browser interface to help. 215s Type 'q()' to quit R. 215s 215s > suppressPackageStartupMessages(library(stars)) 216s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 216s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 216s > (xx = st_redimension(r, along = list(foo = 1:4))) 216s stars_proxy object with 1 attribute in 4 file(s): 216s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" 216s 216s dimension(s): 216s from to offset delta refsys point x/y 216s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 216s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 216s band 1 6 NA NA NA NA 216s foo 1 4 1 1 NA NA 216s > (rr = c(xx, xx)) 216s stars_proxy object with 2 attributes in 8 file(s): 216s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" 216s 216s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" 216s 216s dimension(s): 216s from to offset delta refsys point x/y 216s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 216s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 216s band 1 6 NA NA NA NA 216s foo 1 4 1 1 NA NA 216s > # st_as_stars(rr) 216s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 216s stars_proxy object with 1 attribute in 8 file(s): 216s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s 216s dimension(s): 216s from to offset delta refsys point x/y 216s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 216s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 216s band 1 6 NA NA NA NA 216s foo 1 4 1 1 NA NA 216s bar 1 2 2001-01-01 365 days Date NA 216s > (rr = c(a = xx, b = xx)) 216s stars_proxy object with 2 attributes in 8 file(s): 216s $a 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" 216s 216s $b 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" 216s 216s dimension(s): 216s from to offset delta refsys point x/y 216s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 216s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 216s band 1 6 NA NA NA NA 216s foo 1 4 1 1 NA NA 216s > # st_as_stars(rr) 216s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 216s stars_proxy object with 1 attribute in 8 file(s): 216s $a.b 216s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 216s 216s dimension(s): 216s from to offset delta refsys point x/y 216s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 216s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 216s band 1 6 NA NA NA NA 216s foo 1 4 1 1 NA NA 216s bar 1 2 2001-01-01 365 days Date NA 216s > 216s BEGIN TEST sf.R 216s 216s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 216s Copyright (C) 2025 The R Foundation for Statistical Computing 216s Platform: x86_64-pc-linux-gnu 216s 216s R is free software and comes with ABSOLUTELY NO WARRANTY. 216s You are welcome to redistribute it under certain conditions. 216s Type 'license()' or 'licence()' for distribution details. 216s 216s R is a collaborative project with many contributors. 216s Type 'contributors()' for more information and 216s 'citation()' on how to cite R or R packages in publications. 216s 216s Type 'demo()' for some demos, 'help()' for on-line help, or 216s 'help.start()' for an HTML browser interface to help. 216s Type 'q()' to quit R. 216s 216s > suppressPackageStartupMessages(library(stars)) 216s > library(sf) 216s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 216s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 216s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 216s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 216s > (x = read_stars(tif)[,1:20,1:20]) 216s stars object with 3 dimensions and 1 attribute 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s L7_ETMs.tif 17 44 58 58.19667 70 130 216s dimension(s): 216s from to offset delta refsys point x/y 216s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 216s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 216s band 1 6 NA NA NA NA 216s > # names(x) = "L7_ETM" 216s > 216s > # library(abind) 216s > # x = adrop(x) 216s > image(x) 216s > (sfc = st_as_sfc(x, as_points = FALSE)) 216s Geometry set for 400 features 216s Geometry type: POLYGON 216s Dimension: XY 216s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 216s Projected CRS: SIRGAS 2000 / UTM zone 25S 216s First 5 geometries: 216s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 216s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 216s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 216s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 216s > plot(sfc, add =TRUE) 216s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 216s > (sfc = st_as_sfc(x, as_points = TRUE)) 216s Geometry set for 400 features 216s Geometry type: POINT 216s Dimension: XY 216s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 216s Projected CRS: SIRGAS 2000 / UTM zone 25S 216s First 5 geometries: 216s POINT (288790.5 9120747) 216s POINT (288819 9120747) 216s POINT (288847.5 9120747) 216s POINT (288876 9120747) 216s POINT (288904.5 9120747) 216s > plot(sfc, add = TRUE) 216s > 216s > sf = st_as_sf(x, as_points = FALSE) 216s > plot(sf, border = NA) 216s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 216s > plot(sf, border = NA) 216s Warning message: 216s In CPL_polygonize(file, mask_name, "GTiff", "Memory", "foo", options, : 216s GDAL Message 1: DeprecationWarning: 'Memory' driver is deprecated since GDAL 3.11. Use 'MEM' onwards. Further messages of this type will be suppressed. 216s > 216s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 216s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 216s > identical(sfc1, sfc2) 216s [1] TRUE 216s > 216s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 216s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 216s > identical(sfc1, sfc2) 216s [1] TRUE 216s > 216s > # sf -> stars -> sf 216s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 216s > m = matrix(1:9,3) 216s > colnames(m) = c("a", "b", "c") 216s > foo = st_sf(m, geom = x) 216s > x = st_as_stars(foo) 216s > c(x) 216s stars object with 1 dimensions and 3 attributes 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s a 1 1.5 2 2 2.5 3 216s b 4 4.5 5 5 5.5 6 216s c 7 7.5 8 8 8.5 9 216s dimension(s): 216s from to point values 216s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 216s > st_redimension(x) 216s stars object with 2 dimensions and 1 attribute 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s a.b.c 1 3 5 5 7 9 216s dimension(s): 216s from to point values 216s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 216s new_dim 1 3 NA a, b, c 216s > c(x, x) 216s stars object with 1 dimensions and 6 attributes 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s a 1 1.5 2 2 2.5 3 216s b 4 4.5 5 5 5.5 6 216s c 7 7.5 8 8 8.5 9 216s a.1 1 1.5 2 2 2.5 3 216s b.1 4 4.5 5 5 5.5 6 216s c.1 7 7.5 8 8 8.5 9 216s dimension(s): 216s from to point values 216s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 216s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 216s stars object with 2 dimensions and 1 attribute 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s a.b.c 1 3 5 5 7 9 216s dimension(s): 216s from to offset delta refsys point values 216s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 216s time 1 3 2017-11-27 1 days Date NA NULL 216s > st_as_sf(y) 216s Simple feature collection with 3 features and 3 fields 216s Geometry type: POINT 216s Dimension: XY 216s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 216s CRS: NA 216s 2017-11-27 2017-11-28 2017-11-29 geom 216s 1 1 4 7 POINT (0 1) 216s 2 2 5 8 POINT (1 2) 216s 3 3 6 9 POINT (2 3) 216s > st_as_sf(st_as_stars(foo)) 216s Simple feature collection with 3 features and 3 fields 216s Geometry type: POINT 216s Dimension: XY 216s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 216s CRS: NA 216s a b c geom 216s 1 1 4 7 POINT (0 1) 216s 2 2 5 8 POINT (1 2) 216s 3 3 6 9 POINT (2 3) 216s > 216s > c(x,x,along=1) # NEEDS FIXING! 216s stars object with 1 dimensions and 3 attributes 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s a 1 1.25 2 2 2.75 3 216s b 4 4.25 5 5 5.75 6 216s c 7 7.25 8 8 8.75 9 216s dimension(s): 216s from to point values 216s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 216s > # st_as_stars.sfc 216s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 216s stars object with 2 dimensions and 1 attribute 216s attribute(s): 216s Min. 1st Qu. Median Mean 3rd Qu. Max. 216s values 0 0 0 0.06 0 1 216s dimension(s): 216s from to offset delta x/y 216s x 1 10 0 0.2 [x] 216s y 1 10 3 -0.2 [y] 216s > 216s BEGIN TEST sp.R 216s 216s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 216s Copyright (C) 2025 The R Foundation for Statistical Computing 216s Platform: x86_64-pc-linux-gnu 216s 216s R is free software and comes with ABSOLUTELY NO WARRANTY. 216s You are welcome to redistribute it under certain conditions. 216s Type 'license()' or 'licence()' for distribution details. 216s 216s R is a collaborative project with many contributors. 216s Type 'contributors()' for more information and 216s 'citation()' on how to cite R or R packages in publications. 216s 216s Type 'demo()' for some demos, 'help()' for on-line help, or 216s 'help.start()' for an HTML browser interface to help. 216s Type 'q()' to quit R. 216s 216s > options(rgdal_show_exportToProj4_warnings = "none") 216s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 216s + demo(meuse) 216s + # remove +init=xxx 216s + meuse@proj4string = CRS( 216s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 216s + ) 216s + meuse.grid@proj4string = CRS( 216s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 216s + ) 216s + 216s + suppressPackageStartupMessages(library(stars)) 216s + (m = st_as_stars(meuse)) 216s + (gr = st_as_stars(meuse.grid)) 216s + 216s + m2 = as(m, "Spatial") 216s + summary(m2) 216s + gr2 = as(gr, "Spatial") 216s + summary(gr2) 216s + 216s + all.equal(meuse, m2, check.attributes = FALSE) 216s + fullgrid(meuse.grid) = TRUE 216s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 216s + 216s + #all.equal(meuse, m2) 216s + #all.equal(meuse.grid, gr2) 216s + } 217s 217s 217s demo(meuse) 217s ---- ~~~~~ 217s 217s > require(sp) 217s 217s > crs = CRS("EPSG:28992") 217s 217s > data("meuse") 217s 217s > coordinates(meuse) <- ~x+y 217s 217s > proj4string(meuse) <- crs 217s 217s > data("meuse.grid") 217s 217s > coordinates(meuse.grid) <- ~x+y 217s 217s > gridded(meuse.grid) <- TRUE 217s 217s > proj4string(meuse.grid) <- crs 217s 217s > data("meuse.riv") 217s 217s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 217s 217s > proj4string(meuse.riv) <- crs 217s 217s > data("meuse.area") 217s 217s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 217s 217s > proj4string(meuse.area) <- crs 217s [1] TRUE 217s > 217s BEGIN TEST spacetime.R 217s 217s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 217s Copyright (C) 2025 The R Foundation for Statistical Computing 217s Platform: x86_64-pc-linux-gnu 217s 217s R is free software and comes with ABSOLUTELY NO WARRANTY. 217s You are welcome to redistribute it under certain conditions. 217s Type 'license()' or 'licence()' for distribution details. 217s 217s R is a collaborative project with many contributors. 217s Type 'contributors()' for more information and 217s 'citation()' on how to cite R or R packages in publications. 217s 217s Type 'demo()' for some demos, 'help()' for on-line help, or 217s 'help.start()' for an HTML browser interface to help. 217s Type 'q()' to quit R. 217s 217s > suppressPackageStartupMessages(library(stars)) 217s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 217s + set.seed(1331) 217s + Sys.setenv(TZ="UTC") 217s + example(STFDF) 217s + 217s + x = st_as_stars(stfdf) 217s + xx = as(x, "STFDF") 217s + 217s + # as.xts.stars: 217s + library(xts) 217s + xts = as.xts(x) 217s + st_as_stars(xts) 217s + st_as_stars(xts, dimensions = st_dimensions(x)) 217s + 217s + library(sp) 217s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 217s + gridded(pts) = TRUE 217s + 217s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 217s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 217s + x = st_as_stars(stfdf) 217s + xx = as(x, "STFDF") 217s + 217s + x = st_as_stars(as(stfdf, "STSDF")) 217s + } 218s 218s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 218s 218s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 218s 218s STFDF> library(sp) 218s 218s STFDF> sp = SpatialPoints(sp) 218s 218s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 218s 218s STFDF> m = c(10,20,30) # means for each of the 3 point locations 218s 218s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 218s 218s STFDF> IDs = paste("ID",1:length(mydata)) 218s 218s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 218s 218s STFDF> stfdf = STFDF(sp, time, mydata) 218s 218s STFDF> stfdf 218s An object of class "STFDF" 218s Slot "data": 218s values ID 218s 1 9.38 ID 1 218s 2 21.10 ID 2 218s 3 29.80 ID 3 218s 4 11.50 ID 4 218s 5 19.80 ID 5 218s 6 31.20 ID 6 218s 7 10.40 ID 7 218s 8 20.50 ID 8 218s 9 29.80 ID 9 218s 10 10.30 ID 10 218s 11 21.40 ID 11 218s 12 29.40 ID 12 218s 218s Slot "sp": 218s SpatialPoints: 218s x y 218s point1 0 0 218s point2 0 1 218s point3 1 1 218s Coordinate Reference System (CRS) arguments: NA 218s 218s Slot "time": 218s timeIndex 218s 2010-08-05 10:00:00 1 218s 2010-08-05 11:00:00 2 218s 2010-08-05 12:00:00 3 218s 2010-08-05 13:00:00 4 218s 218s Slot "endTime": 218s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 218s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 218s 218s 218s STFDF> stfdf[1:2,] 218s An object of class "STFDF" 218s Slot "data": 218s values ID 218s 1 9.38 ID 1 218s 2 21.10 ID 2 218s 3 11.50 ID 4 218s 4 19.80 ID 5 218s 5 10.40 ID 7 218s 6 20.50 ID 8 218s 7 10.30 ID 10 218s 8 21.40 ID 11 218s 218s Slot "sp": 218s SpatialPoints: 218s x y 218s point1 0 0 218s point2 0 1 218s Coordinate Reference System (CRS) arguments: NA 218s 218s Slot "time": 218s timeIndex 218s 2010-08-05 10:00:00 1 218s 2010-08-05 11:00:00 2 218s 2010-08-05 12:00:00 3 218s 2010-08-05 13:00:00 4 218s 218s Slot "endTime": 218s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 218s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 218s 218s 218s STFDF> stfdf[,1:2] 218s An object of class "STFDF" 218s Slot "data": 218s values ID 218s 1 9.38 ID 1 218s 2 21.10 ID 2 218s 3 29.80 ID 3 218s 4 11.50 ID 4 218s 5 19.80 ID 5 218s 6 31.20 ID 6 218s 218s Slot "sp": 218s SpatialPoints: 218s x y 218s point1 0 0 218s point2 0 1 218s point3 1 1 218s Coordinate Reference System (CRS) arguments: NA 218s 218s Slot "time": 218s timeIndex 218s 2010-08-05 10:00:00 1 218s 2010-08-05 11:00:00 2 218s 218s Slot "endTime": 218s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 218s 218s 218s STFDF> stfdf[,,2] 218s An object of class "STFDF" 218s Slot "data": 218s ID 218s 1 ID 1 218s 2 ID 2 218s 3 ID 3 218s 4 ID 4 218s 5 ID 5 218s 6 ID 6 218s 7 ID 7 218s 8 ID 8 218s 9 ID 9 218s 10 ID 10 218s 11 ID 11 218s 12 ID 12 218s 218s Slot "sp": 218s SpatialPoints: 218s x y 218s point1 0 0 218s point2 0 1 218s point3 1 1 218s Coordinate Reference System (CRS) arguments: NA 218s 218s Slot "time": 218s timeIndex 218s 2010-08-05 10:00:00 1 218s 2010-08-05 11:00:00 2 218s 2010-08-05 12:00:00 3 218s 2010-08-05 13:00:00 4 218s 218s Slot "endTime": 218s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 218s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 218s 218s 218s STFDF> stfdf[,,"values"] 218s An object of class "STFDF" 218s Slot "data": 218s values 218s 1 9.38 218s 2 21.10 218s 3 29.80 218s 4 11.50 218s 5 19.80 218s 6 31.20 218s 7 10.40 218s 8 20.50 218s 9 29.80 218s 10 10.30 218s 11 21.40 218s 12 29.40 218s 218s Slot "sp": 218s SpatialPoints: 218s x y 218s point1 0 0 218s point2 0 1 218s point3 1 1 218s Coordinate Reference System (CRS) arguments: NA 218s 218s Slot "time": 218s timeIndex 218s 2010-08-05 10:00:00 1 218s 2010-08-05 11:00:00 2 218s 2010-08-05 12:00:00 3 218s 2010-08-05 13:00:00 4 218s 218s Slot "endTime": 218s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 218s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 218s 218s 218s STFDF> stfdf[1,] 218s values ID timeIndex 218s 2010-08-05 10:00:00 9.38 ID 1 1 218s 2010-08-05 11:00:00 11.50 ID 4 2 218s 2010-08-05 12:00:00 10.40 ID 7 3 218s 2010-08-05 13:00:00 10.30 ID 10 4 218s 218s STFDF> stfdf[,2] 218s coordinates values ID 218s 1 (0, 0) 11.5 ID 4 218s 2 (0, 1) 19.8 ID 5 218s 3 (1, 1) 31.2 ID 6 218s 218s STFDF> as(stfdf[,,1], "xts") 218s point1 point2 point3 218s 2010-08-05 10:00:00 9.38 21.1 29.8 218s 2010-08-05 11:00:00 11.50 19.8 31.2 218s 2010-08-05 12:00:00 10.40 20.5 29.8 218s 2010-08-05 13:00:00 10.30 21.4 29.4 218s 218s STFDF> as(stfdf[,,2], "xts") 218s point1 point2 point3 218s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 218s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 218s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 218s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 218s 218s STFDF> # examples for [[, [[<-, $ and $<- 218s STFDF> stfdf[[1]] 218s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 218s 218s STFDF> stfdf[["values"]] 218s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 218s 218s STFDF> stfdf[["newVal"]] <- rnorm(12) 218s 218s STFDF> stfdf$ID 218s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 218s [10] "ID 10" "ID 11" "ID 12" 218s 218s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 218s 218s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 218s 218s STFDF> stfdf 218s An object of class "STFDF" 218s Slot "data": 218s values ID newVal NewID 218s 1 9.38 OldIDs1 -0.3125824 NewIDs12 218s 2 21.10 OldIDs2 -1.0536246 NewIDs11 218s 3 29.80 OldIDs3 -0.7188880 NewIDs10 218s 4 11.50 OldIDs4 -1.0525404 NewIDs9 218s 5 19.80 OldIDs5 -0.8441413 NewIDs8 218s 6 31.20 OldIDs6 1.1420848 NewIDs7 218s 7 10.40 OldIDs7 1.9479070 NewIDs6 218s 8 20.50 OldIDs8 -0.4512836 NewIDs5 218s 9 29.80 OldIDs9 0.6695716 NewIDs4 218s 10 10.30 OldIDs10 0.1269003 NewIDs3 218s 11 21.40 OldIDs11 -0.7273297 NewIDs2 218s 12 29.40 OldIDs12 -0.8151803 NewIDs1 218s 218s Slot "sp": 218s SpatialPoints: 218s x y 218s point1 0 0 218s point2 0 1 218s point3 1 1 218s Coordinate Reference System (CRS) arguments: NA 218s 218s Slot "time": 218s timeIndex 218s 2010-08-05 10:00:00 1 218s 2010-08-05 11:00:00 2 218s 2010-08-05 12:00:00 3 218s 2010-08-05 13:00:00 4 218s 218s Slot "endTime": 218s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 218s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 218s 218s 218s STFDF> x = stfdf[stfdf[1:2,],] 218s 218s STFDF> all.equal(x, stfdf[1:2,]) 218s [1] TRUE 218s 218s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 218s [1] TRUE 218s Loading required package: zoo 218s 218s Attaching package: 'zoo' 218s 218s The following objects are masked from 'package:base': 218s 218s as.Date, as.Date.numeric 218s 218s only the first attribute will used; maybe use merge() first? 218s > 218s BEGIN TEST spatstat.R 218s 218s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 218s Copyright (C) 2025 The R Foundation for Statistical Computing 218s Platform: x86_64-pc-linux-gnu 218s 218s R is free software and comes with ABSOLUTELY NO WARRANTY. 218s You are welcome to redistribute it under certain conditions. 218s Type 'license()' or 'licence()' for distribution details. 218s 218s R is a collaborative project with many contributors. 218s Type 'contributors()' for more information and 218s 'citation()' on how to cite R or R packages in publications. 218s 218s Type 'demo()' for some demos, 'help()' for on-line help, or 218s 'help.start()' for an HTML browser interface to help. 218s Type 'q()' to quit R. 218s 218s > suppressPackageStartupMessages(library(sf)) 218s > 218s > library(stars) 218s Loading required package: abind 218s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 218s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 218s + s = adrop(read_stars(tif)[,,,1]) > 70 218s + plot(s) 218s + m = as.owin(s) 218s + plot(m) 218s + print(table(m$m)) 218s + } 219s 219s FALSE TRUE 219s 39494 83354 219s > 219s BEGIN TEST stars.R 219s 219s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 219s Copyright (C) 2025 The R Foundation for Statistical Computing 219s Platform: x86_64-pc-linux-gnu 219s 219s R is free software and comes with ABSOLUTELY NO WARRANTY. 219s You are welcome to redistribute it under certain conditions. 219s Type 'license()' or 'licence()' for distribution details. 219s 219s R is a collaborative project with many contributors. 219s Type 'contributors()' for more information and 219s 'citation()' on how to cite R or R packages in publications. 219s 219s Type 'demo()' for some demos, 'help()' for on-line help, or 219s 'help.start()' for an HTML browser interface to help. 219s Type 'q()' to quit R. 219s 219s > Sys.setenv(TZ="UTC") 219s > suppressPackageStartupMessages(library(stars)) 220s > set.seed(13521) # runif 220s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 220s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 220s stars object with 3 dimensions and 2 attributes 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 54 69 68.91242 86 255 220s L7_ETMs.tif.1 1 54 69 68.91242 86 255 220s dimension(s): 220s from to offset delta refsys point x/y 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 220s band 1 6 NA NA NA NA 220s > (x = read_stars(tif)) 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 54 69 68.91242 86 255 220s dimension(s): 220s from to offset delta refsys point x/y 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 220s band 1 6 NA NA NA NA 220s > # image(x) 220s > gdal_crs(tif) 220s Coordinate Reference System: 220s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 220s wkt: 220s PROJCRS["SIRGAS 2000 / UTM zone 25S", 220s BASEGEOGCRS["SIRGAS 2000", 220s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 220s ELLIPSOID["GRS 1980",6378137,298.257222101, 220s LENGTHUNIT["metre",1]]], 220s PRIMEM["Greenwich",0, 220s ANGLEUNIT["degree",0.0174532925199433]], 220s ID["EPSG",4674]], 220s CONVERSION["UTM zone 25S", 220s METHOD["Transverse Mercator", 220s ID["EPSG",9807]], 220s PARAMETER["Latitude of natural origin",0, 220s ANGLEUNIT["degree",0.0174532925199433], 220s ID["EPSG",8801]], 220s PARAMETER["Longitude of natural origin",-33, 220s ANGLEUNIT["degree",0.0174532925199433], 220s ID["EPSG",8802]], 220s PARAMETER["Scale factor at natural origin",0.9996, 220s SCALEUNIT["unity",1], 220s ID["EPSG",8805]], 220s PARAMETER["False easting",500000, 220s LENGTHUNIT["metre",1], 220s ID["EPSG",8806]], 220s PARAMETER["False northing",10000000, 220s LENGTHUNIT["metre",1], 220s ID["EPSG",8807]]], 220s CS[Cartesian,2], 220s AXIS["easting",east, 220s ORDER[1], 220s LENGTHUNIT["metre",1]], 220s AXIS["northing",north, 220s ORDER[2], 220s LENGTHUNIT["metre",1]], 220s ID["EPSG",31985]] 220s > plot(x) 220s > plot(x, join_zlim = FALSE) 220s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 54 69 68.91242 86 255 220s dimension(s): 220s from to offset delta refsys point x/y 220s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 220s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 220s c 1 6 NA NA NA NA 220s > st_get_dimension_values(x, 3) 220s [1] 1 2 3 4 5 6 220s > 220s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 54 69 68.91242 86 255 220s dimension(s): 220s from to offset delta refsys point values x/y 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 220s band_number 1 6 NA NA NA TRUE 1,...,7 220s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 220s + units::set_units(um) -> bw # units::set_units(µm) -> bw 220s > # set bandwidth midpoint: 220s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 220s + names = "bandwidth_midpoint", point = TRUE)) 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 54 69 68.91242 86 255 220s dimension(s): 220s from to offset delta refsys point 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 220s bandwidth_midpoint 1 6 NA NA udunits TRUE 220s values x/y 220s x NULL [x] 220s y NULL [y] 220s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 220s > # set bandwidth intervals: 220s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 54 69 68.91242 86 255 220s dimension(s): 220s from to offset delta refsys point 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 220s bandwidth 1 6 NA NA udunits NA 220s values x/y 220s x NULL [x] 220s y NULL [y] 220s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 220s > 220s > x + x 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 2 108 138 137.8248 172 510 220s dimension(s): 220s from to offset delta refsys point x/y 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 220s band 1 6 NA NA NA NA 220s > x * x 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 220s dimension(s): 220s from to offset delta refsys point x/y 220s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 220s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 220s band 1 6 NA NA NA NA 220s > x[,,,1:3] 220s stars object with 3 dimensions and 1 attribute 220s attribute(s): 220s Min. 1st Qu. Median Mean 3rd Qu. Max. 220s L7_ETMs.tif 21 58 70 70.36041 83 255 220s dimension(s): 221s from to offset delta refsys point x/y 221s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 221s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 221s band 1 3 NA NA NA NA 221s > x[,1:100,100:200,] 221s stars object with 3 dimensions and 1 attribute 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. 221s L7_ETMs.tif 13 54 65 67.21531 77 252 221s dimension(s): 221s from to offset delta refsys point x/y 221s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 221s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 221s band 1 6 NA NA NA NA 221s > sqrt(x) 221s stars object with 3 dimensions and 1 attribute 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. 221s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 221s dimension(s): 221s from to offset delta refsys point x/y 221s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 221s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 221s band 1 6 NA NA NA NA 221s > st_apply(x, 3, min) 221s stars object with 1 dimensions and 1 attribute 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. 221s min 1 3 15 18.5 29.25 47 221s dimension(s): 221s from to 221s band 1 6 221s > st_apply(x, 1:2, max) 221s stars object with 2 dimensions and 1 attribute 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. 221s max 55 85 96 99.36018 113 255 221s dimension(s): 221s from to offset delta refsys point x/y 221s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 221s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 221s > st_apply(x, 1:2, range) 221s stars object with 3 dimensions and 1 attribute 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. 221s L7_ETMs.tif 1 50 71 72.43565 96 255 221s dimension(s): 221s from to offset delta refsys point x/y 221s range 1 2 NA NA NA NA 221s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 221s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 221s > 221s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 221s > x = read_stars(geomatrix) 221s > y = st_transform(x, st_crs(4326)) 221s > st_coordinates(x)[1:2,] 221s x y 221s 1 1841000 1144000 221s 2 1841002 1143995 221s > 221s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 221s > if (nc != "" && require(PCICt, quietly = TRUE)) { 221s + print(x <- read_stars(nc)) 221s + print(st_bbox(x)) 221s + s = st_as_stars(st_bbox(x)) # inside = NA 221s + print(st_bbox(s)) 221s + s = st_as_stars(st_bbox(x), inside = TRUE) 221s + print(st_bbox(s)) 221s + s = st_as_stars(st_bbox(x), inside = FALSE) 221s + print(st_bbox(s)) 221s + (s = st_as_stars(st_bbox(x), dy = 1)) 221s + print(st_bbox(s)) 221s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 221s + s = st_as_stars(st_bbox(x), dx = 10) 221s + print(st_bbox(s)) 221s + s = st_as_stars(st_bbox(x), dx = 20) 221s + print(st_bbox(s)) 221s + x1 = x 221s + st_crs(x1) = "OGC:CRS84" 221s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 221s + 221s + df = as.data.frame(x) 221s + if (require(units, quietly = TRUE)) 221s + print(units::drop_units(x)) 221s + 221s + print(dimnames(x)) 221s + dimnames(x) <- letters[1:3] 221s + print(dimnames(x)) 221s + } # PCICt 221s > 221s > st_as_stars() 221s stars object with 2 dimensions and 1 attribute 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. 221s values 0 0 0 0 0 0 221s dimension(s): 221s from to offset delta refsys x/y 221s x 1 360 -180 1 WGS 84 (CRS84) [x] 221s y 1 180 90 -1 WGS 84 (CRS84) [y] 221s > 221s > # multiple sub-datasets: 221s > nc_red = system.file("nc/reduced.nc", package = "stars") 221s > red = read_stars(nc_red) 221s sst, anom, err, ice, 221s > red 221s stars object with 4 dimensions and 4 attributes 221s attribute(s): 221s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 221s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 221s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 221s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 221s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 221s dimension(s): 221s from to offset delta refsys x/y 221s x 1 180 -1 2 NA [x] 221s y 1 90 90 -2 NA [y] 221s zlev 1 1 0 [m] NA NA 221s time 1 1 1981-12-31 UTC NA POSIXct 221s > plot(red) 221s > 221s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 221s > st_bbox(x) 221s xmin ymin xmax ymax 221s 288776.3 9120475.8 289061.3 9120760.8 221s > x = read_stars(tif) 221s > merge(split(x, "band")) 222s stars object with 3 dimensions and 1 attribute 222s attribute(s): 222s Min. 1st Qu. Median Mean 3rd Qu. Max. 222s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 222s dimension(s): 222s from to offset delta refsys point values 222s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 222s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 222s attributes 1 6 NA NA NA NA X1,...,X6 222s x/y 222s x [x] 222s y [y] 222s attributes 222s > 222s > read_stars(c(tif,tif)) # merges as attributes 222s stars object with 3 dimensions and 2 attributes 222s attribute(s): 222s Min. 1st Qu. Median Mean 3rd Qu. Max. 222s L7_ETMs.tif 1 54 69 68.91242 86 255 222s L7_ETMs.tif.1 1 54 69 68.91242 86 255 222s dimension(s): 222s from to offset delta refsys point x/y 222s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 222s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 222s band 1 6 NA NA NA NA 222s > read_stars(c(tif,tif), along = "sensor") 222s stars object with 4 dimensions and 1 attribute 222s attribute(s), summary of first 1e+05 cells: 222s Min. 1st Qu. Median Mean 3rd Qu. Max. 222s L7_ETMs.tif 47 65 76 77.3419 87 255 222s dimension(s): 222s from to offset delta refsys point x/y 222s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 222s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 222s band 1 6 NA NA NA NA 222s sensor 1 2 NA NA NA NA 222s > read_stars(c(tif,tif), along = 4) 222s stars object with 4 dimensions and 1 attribute 222s attribute(s), summary of first 1e+05 cells: 222s Min. 1st Qu. Median Mean 3rd Qu. Max. 222s L7_ETMs.tif 47 65 76 77.3419 87 255 222s dimension(s): 222s from to offset delta refsys point x/y 222s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 222s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 222s band 1 6 NA NA NA NA 222s new_dim 1 2 NA NA NA NA 222s > read_stars(c(tif,tif), along = "band") 222s stars object with 3 dimensions and 1 attribute 222s attribute(s), summary of first 1e+05 cells: 222s Min. 1st Qu. Median Mean 3rd Qu. Max. 222s L7_ETMs.tif 47 65 76 77.3419 87 255 222s dimension(s): 222s from to offset delta refsys point x/y 222s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 222s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 222s band 1 12 NA NA NA NA 222s > read_stars(c(tif,tif), along = 3) 222s stars object with 3 dimensions and 1 attribute 222s attribute(s), summary of first 1e+05 cells: 222s Min. 1st Qu. Median Mean 3rd Qu. Max. 222s L7_ETMs.tif 47 65 76 77.3419 87 255 222s dimension(s): 223s from to offset delta refsys point x/y 223s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 223s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 223s band 1 12 NA NA NA NA 223s > 223s > # cut: 223s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 223s > x = read_stars(tif) 223s > cut(x, c(0, 50, 100, 255)) 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s L7_ETMs.tif 223s (0,50] :156060 223s (50,100] :503764 223s (100,255]: 77264 223s dimension(s): 223s from to offset delta refsys point x/y 223s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 223s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 223s band 1 6 NA NA NA NA 223s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 223s stars object with 2 dimensions and 1 attribute 223s attribute(s): 223s L7_ETMs.tif 223s (0,50] : 1 223s (50,100] :117134 223s (100,255]: 5713 223s dimension(s): 223s from to offset delta refsys point x/y 223s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 223s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 223s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 223s > 223s > st_bbox(st_dimensions(x)) 223s xmin ymin xmax ymax 223s 288776.3 9110728.8 298722.8 9120760.8 223s > x[x < 0] = NA 223s > x[is.na(x)] = 0 223s > 223s > # c: 223s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 223s > if (FALSE && f != "") { 223s + files = c("avhrr-only-v2.19810901.nc", 223s + "avhrr-only-v2.19810902.nc", 223s + "avhrr-only-v2.19810903.nc", 223s + "avhrr-only-v2.19810904.nc", 223s + "avhrr-only-v2.19810905.nc", 223s + "avhrr-only-v2.19810906.nc", 223s + "avhrr-only-v2.19810907.nc", 223s + "avhrr-only-v2.19810908.nc", 223s + "avhrr-only-v2.19810909.nc") 223s + l = list() 223s + for (f in files) { 223s + from = system.file(paste0("netcdf/", f), package = "starsdata") 223s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 223s + } 223s + ret = do.call(c, l) 223s + print(ret) 223s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 223s + print(ret) 223s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 223s + #print(ret) 223s + } 223s > 223s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 223s from to point values 223s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 223s > 223s > if (FALSE && require("starsdata", quietly = TRUE)) { 223s + # curvilinear: 223s + s5p = system.file( 223s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 223s + package = "starsdata") 223s + print(s5p) 223s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 223s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 223s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 223s + lat = read_stars(lat_ds) 223s + lon = read_stars(lon_ds) 223s + nit = read_stars(nit_ds) 223s + nit[[1]][nit[[1]] > 9e+36] = NA 223s + 223s + ll = setNames(c(lon, lat), c("x", "y")) 223s + nit.c = st_as_stars(nit, curvilinear = ll) 223s + print(nit.c) 223s + 223s + s5p = system.file( 223s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 223s + package = "starsdata") 223s + nit.c2 = read_stars(s5p, 223s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 223s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 223s + print(all.equal(nit.c, nit.c2)) 223s + } 223s > 223s BEGIN TEST subset.R 223s 223s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 223s Copyright (C) 2025 The R Foundation for Statistical Computing 223s Platform: x86_64-pc-linux-gnu 223s 223s R is free software and comes with ABSOLUTELY NO WARRANTY. 223s You are welcome to redistribute it under certain conditions. 223s Type 'license()' or 'licence()' for distribution details. 223s 223s R is a collaborative project with many contributors. 223s Type 'contributors()' for more information and 223s 'citation()' on how to cite R or R packages in publications. 223s 223s Type 'demo()' for some demos, 'help()' for on-line help, or 223s 'help.start()' for an HTML browser interface to help. 223s Type 'q()' to quit R. 223s 223s > suppressPackageStartupMessages(library(stars)) 223s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 223s > x = read_stars(tif) 223s > y = st_set_dimensions(x, "band", point = TRUE) 223s > y[,1:10, 1:10, c(1,4,3,2)] 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s Min. 1st Qu. Median Mean 3rd Qu. Max. 223s L7_ETMs.tif 25 45 57 56.535 64 97 223s dimension(s): 223s from to offset delta refsys point values x/y 223s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 223s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 223s band 1 4 NA NA NA TRUE 1,...,2 223s > y = st_set_dimensions(x, "band", point = NA) 223s > y[,1:10, 1:10, c(1,4,3,2)] 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s Min. 1st Qu. Median Mean 3rd Qu. Max. 223s L7_ETMs.tif 25 45 57 56.535 64 97 223s dimension(s): 223s from to offset delta refsys point values x/y 223s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 223s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 223s band 1 4 NA NA NA NA [1,2),...,[2,3) 223s > y = st_set_dimensions(x, "band", point = FALSE) 223s > y[,1:10, 1:10, c(1,4,3,2)] 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s Min. 1st Qu. Median Mean 3rd Qu. Max. 223s L7_ETMs.tif 25 45 57 56.535 64 97 223s dimension(s): 223s from to offset delta refsys point values x/y 223s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 223s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 223s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 223s > y = st_set_dimensions(x, "band", values = letters[1:6]) 223s > y[,1:10, 1:10, c(1,4,3,2)] 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s Min. 1st Qu. Median Mean 3rd Qu. Max. 223s L7_ETMs.tif 25 45 57 56.535 64 97 223s dimension(s): 223s from to offset delta refsys point values x/y 223s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 223s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 223s band 1 4 NA NA NA NA a,...,b 223s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 223s > y[,1:10, 1:10, c(1,4,3,2)] 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s Min. 1st Qu. Median Mean 3rd Qu. Max. 223s L7_ETMs.tif 25 45 57 56.535 64 97 223s dimension(s): 223s from to offset delta refsys point values x/y 223s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 223s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 223s band 1 4 NA NA NA NA a,...,b 223s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 223s > y[,1:10, 1:10, c(1,4,3,2)] 223s stars object with 3 dimensions and 1 attribute 223s attribute(s): 223s Min. 1st Qu. Median Mean 3rd Qu. Max. 223s L7_ETMs.tif 25 45 57 56.535 64 97 223s dimension(s): 223s from to offset delta refsys point values x/y 223s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 223s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 223s band 1 4 NA NA NA TRUE a,...,b 223s > 223s BEGIN TEST testthat.R 223s 223s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 223s Copyright (C) 2025 The R Foundation for Statistical Computing 223s Platform: x86_64-pc-linux-gnu 223s 223s R is free software and comes with ABSOLUTELY NO WARRANTY. 223s You are welcome to redistribute it under certain conditions. 223s Type 'license()' or 'licence()' for distribution details. 223s 223s R is a collaborative project with many contributors. 223s Type 'contributors()' for more information and 223s 'citation()' on how to cite R or R packages in publications. 223s 223s Type 'demo()' for some demos, 'help()' for on-line help, or 223s 'help.start()' for an HTML browser interface to help. 223s Type 'q()' to quit R. 223s 223s > ## load dependencies 223s > library(testthat) 223s > suppressPackageStartupMessages(library(stars)) 224s > 224s > ## test package 224s > test_check("stars") 227s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 227s 227s == Skipped tests (5) =========================================================== 227s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 227s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 227s * {cubble} is not installed (1): 'test-cubble.R:2:3' 227s 227s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 227s > 227s BEGIN TEST tidy.R 227s 227s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 227s Copyright (C) 2025 The R Foundation for Statistical Computing 227s Platform: x86_64-pc-linux-gnu 227s 227s R is free software and comes with ABSOLUTELY NO WARRANTY. 227s You are welcome to redistribute it under certain conditions. 227s Type 'license()' or 'licence()' for distribution details. 227s 227s R is a collaborative project with many contributors. 227s Type 'contributors()' for more information and 227s 'citation()' on how to cite R or R packages in publications. 227s 227s Type 'demo()' for some demos, 'help()' for on-line help, or 227s 'help.start()' for an HTML browser interface to help. 227s Type 'q()' to quit R. 227s 228s > suppressPackageStartupMessages(library(stars)) 228s > 228s > if (require(dplyr, quietly = TRUE)) { 228s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 228s + x <- read_stars(tif) 228s + (y <- x %>% select(L7_ETMs.tif)) 228s + (y <- x %>% filter(band > 2)) 228s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 228s + x %>% pull(L7_ETMs.tif) %>% class() 228s + x %>% filter(x > 289900) 228s + x %>% slice("x", 50:100) 228s + 228s + suppressPackageStartupMessages(library(ggplot2)) 228s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 228s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 228s + coord_equal() 228s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 228s + 228s + 228s + # see https://github.com/r-spatial/stars/issues/539 : 228s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 228s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 228s + 228s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 228s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 228s + try(x - slice(y, 'band', 1)) # fails as expected 228s + y - slice(y, 'band', 1) # runs as expected 228s + } 228s 228s Attaching package: 'dplyr' 228s 228s The following objects are masked from 'package:stats': 228s 228s filter, lag 228s 228s The following objects are masked from 'package:base': 228s 228s intersect, setdiff, setequal, union 228s 228s Error in Ops.units(X[[i]], ...) : 228s both operands of the expression should be "units" objects 228s Error in Ops.units(X[[i]], ...) : 228s both operands of the expression should be "units" objects 228s stars object with 3 dimensions and 1 attribute 228s attribute(s): 229s Min. 1st Qu. Median Mean 3rd Qu. Max. 229s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 229s dimension(s): 229s from to offset delta refsys point x/y 229s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 229s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 229s band 1 6 NA NA NA NA 229s > 229s BEGIN TEST transform.R 229s 229s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 229s Copyright (C) 2025 The R Foundation for Statistical Computing 229s Platform: x86_64-pc-linux-gnu 229s 229s R is free software and comes with ABSOLUTELY NO WARRANTY. 229s You are welcome to redistribute it under certain conditions. 229s Type 'license()' or 'licence()' for distribution details. 229s 229s R is a collaborative project with many contributors. 229s Type 'contributors()' for more information and 229s 'citation()' on how to cite R or R packages in publications. 229s 229s Type 'demo()' for some demos, 'help()' for on-line help, or 229s 'help.start()' for an HTML browser interface to help. 229s Type 'q()' to quit R. 229s 229s > suppressPackageStartupMessages(library(stars)) 229s > #suppressPackageStartupMessages(library(lwgeom)) 229s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 229s > (x = read_stars(geomatrix)) 229s stars object with 2 dimensions and 1 attribute 229s attribute(s): 229s Min. 1st Qu. Median Mean 3rd Qu. Max. 229s geomatrix.tif 74 107 123 126.765 132 255 229s dimension(s): 229s from to offset delta refsys point x/y 229s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 229s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 229s sheared raster with parameters: -5 -5 229s > new = st_crs(4326) 229s > y = st_transform(x, new) 229s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 229s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 229s > image(y, add = TRUE) 229s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 229s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 229s > 229s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 229s > x = read_stars(tif)[,1:10,1:10,1:3] 229s > x_ = st_transform(x, st_crs(4326)) 229s > ## IGNORE_RDIFF_BEGIN 229s > if (require(lwgeom, quietly = TRUE)) { 229s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 229s + st_crs(x_) = st_crs(x__) 229s + print(all.equal(x_,x__)) 229s + 229s + # x__ = st_transform(x, x_) #now in st_warp 229s + # all.equal(x_, x__) 229s + 229s + x = st_xy2sfc(x, as_points = FALSE) 229s + (x_ = st_transform(x, st_crs(4326))) 229s + (x__ = st_transform_proj(x, st_crs(4326))) 229s + print(all.equal(x_,x__,check.attributes = FALSE)) 229s + } 229s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 229s 229s Attaching package: 'lwgeom' 229s 229s The following object is masked from 'package:sf': 229s 229s st_perimeter 229s 229s [1] TRUE 229s [1] TRUE 229s > ## IGNORE_RDIFF_END 229s > 229s > # nothing to transform: now errs: 229s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 229s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 229s > 229s Warning messages: 229s 1: In fun(libname, pkgname) : 229s GEOS versions differ: lwgeom has 3.13.0 sf has 3.14.1 229s 2: In fun(libname, pkgname) : 229s PROJ versions differ: lwgeom has 9.5.1 sf has 9.7.0 229s Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 229s !is.na(st_crs(x)) is not TRUE 229s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 229s !is.na(st_crs(x)) is not TRUE 229s BEGIN TEST warp.R 229s 229s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 229s Copyright (C) 2025 The R Foundation for Statistical Computing 229s Platform: x86_64-pc-linux-gnu 229s 229s R is free software and comes with ABSOLUTELY NO WARRANTY. 229s You are welcome to redistribute it under certain conditions. 229s Type 'license()' or 'licence()' for distribution details. 229s 229s R is a collaborative project with many contributors. 229s Type 'contributors()' for more information and 229s 'citation()' on how to cite R or R packages in publications. 229s 229s Type 'demo()' for some demos, 'help()' for on-line help, or 229s 'help.start()' for an HTML browser interface to help. 229s Type 'q()' to quit R. 229s 229s > suppressPackageStartupMessages(library(stars)) 230s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 230s > x = read_stars(geomatrix) 230s > # can stars reproduce what gdal does, by default? 230s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 230s > y = st_warp(x, x2) 230s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 230s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 230s > names(x2) = names(y) 230s > all.equal(x2, y) # yes? 230s [1] TRUE 230s > 230s > # does gdal reproduce with stars template object? 230s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 230s stars object with 2 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 230s file.tif 74 115 123 126.4289 132 255 224 230s dimension(s): 230s from to offset delta refsys point x/y 230s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 230s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 230s > 230s > # does gdal reproduce what stars does, default cell size? 230s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 230s stars object with 2 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 230s geomatrix.tif 74 115 123 126.4289 132 255 224 230s dimension(s): 230s from to offset delta refsys x/y 230s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 230s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 230s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 230s stars object with 2 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 230s file.tif 74 115 123 126.4289 132 255 224 230s dimension(s): 230s from to offset delta refsys point x/y 230s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 230s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 230s > 230s > # try with multiple bands: 230s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 230s > (x1 = read_stars(tif)) 230s stars object with 3 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. 230s L7_ETMs.tif 1 54 69 68.91242 86 255 230s dimension(s): 230s from to offset delta refsys point x/y 230s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 230s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 230s band 1 6 NA NA NA NA 230s > tifcp = tempfile(fileext = ".tif") 230s > file.copy(tif, tifcp) 230s [1] TRUE 230s > x1p = read_stars(tifcp, proxy = TRUE) 230s > st_dimensions(x1p) 230s from to offset delta refsys point x/y 230s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 230s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 230s band 1 6 NA NA NA NA 230s > (x1a = st_warp(x1, crs = st_crs(4326))) 230s stars object with 3 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 230s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 230s dimension(s): 230s from to offset delta refsys x/y 230s x 1 350 -34.92 0.0002592 WGS 84 [x] 230s y 1 352 -7.95 -0.0002592 WGS 84 [y] 230s band 1 6 NA NA NA 230s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 230s stars object with 3 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. 230s file.tif 1 54 69 68.91242 86 255 230s dimension(s): 230s from to offset delta refsys point x/y 230s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 230s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 230s band 1 6 NA NA NA NA 230s > 230s > # does gdal reproduce what stars does? Smaller grid: 230s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 230s > # x2 = x2[,2:43,2:43] 230s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 230s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 230s > ### doesn't work: FIXME: check with more recent GDAL: 230s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 230s stars object with 2 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 230s file.tif 74 107 123 126.6584 132 255 727 230s dimension(s): 230s from to offset delta refsys point x/y 230s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 230s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 230s > if (interactive()) { plot(y, breaks = "equal") } 230s > names(x2) = names(y) 230s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 230s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 230s > u = unique(as.vector(x2[[1]]-y[[1]])) 230s > 230s > g = st_as_stars() 230s > attr(g, "dimensions")$x$offset = 0 230s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 230s > if (interactive()) { plot(g, axes=TRUE) } 230s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 230s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 230s > all.equal(a, b, check.attributes = FALSE) 230s [1] TRUE 230s > 230s BEGIN TEST write.R 230s 230s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 230s Copyright (C) 2025 The R Foundation for Statistical Computing 230s Platform: x86_64-pc-linux-gnu 230s 230s R is free software and comes with ABSOLUTELY NO WARRANTY. 230s You are welcome to redistribute it under certain conditions. 230s Type 'license()' or 'licence()' for distribution details. 230s 230s R is a collaborative project with many contributors. 230s Type 'contributors()' for more information and 230s 'citation()' on how to cite R or R packages in publications. 230s 230s Type 'demo()' for some demos, 'help()' for on-line help, or 230s 'help.start()' for an HTML browser interface to help. 230s Type 'q()' to quit R. 230s 230s > suppressPackageStartupMessages(library(stars)) 230s > 230s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 230s > (x = read_stars(tif)) 230s stars object with 3 dimensions and 1 attribute 230s attribute(s): 230s Min. 1st Qu. Median Mean 3rd Qu. Max. 230s L7_ETMs.tif 1 54 69 68.91242 86 255 230s dimension(s): 231s from to offset delta refsys point x/y 231s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 231s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 231s band 1 6 NA NA NA NA 231s > 231s > # write stars object: 231s > write_stars(x, tempfile(), driver = "GTiff") 231s > 231s > # write stars_proxy object: 231s > (x = read_stars(tif, proxy = TRUE)) 231s stars_proxy object with 1 attribute in 1 file(s): 231s $L7_ETMs.tif 231s [1] "[...]/L7_ETMs.tif" 231s 231s dimension(s): 231s from to offset delta refsys point x/y 231s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 231s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 231s band 1 6 NA NA NA NA 231s > write_stars(x, tempfile(), driver = "GTiff") 231s 231s > 231s autopkgtest [19:28:26]: test run-unit-test: -----------------------] 231s autopkgtest [19:28:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 231s run-unit-test PASS 232s autopkgtest [19:28:27]: test pkg-r-autopkgtest: preparing testbed 252s Creating nova instance adt-resolute-amd64-r-cran-stars-20260129-192435-juju-7f2275-prod-proposed-migration-environment-2-4a9559a4-7110-411a-8ea8-9c409067b27f from image adt/ubuntu-resolute-amd64-server-20260129.img (UUID c052dd91-e629-41e8-9bf0-bad94c4bd713)... 339s autopkgtest [19:30:14]: testbed dpkg architecture: amd64 339s autopkgtest [19:30:14]: testbed apt version: 3.1.14 339s autopkgtest [19:30:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 339s autopkgtest [19:30:14]: testbed release detected to be: resolute 340s autopkgtest [19:30:15]: updating testbed package index (apt update) 340s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 340s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 340s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 340s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 340s Get:5 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 348s Preparing to unpack .../libsgutils2-1.48_1.48-3ubuntu2_amd64.deb ... 348s Unpacking libsgutils2-1.48:amd64 (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 348s Preparing to unpack .../sg3-utils_1.48-3ubuntu2_amd64.deb ... 348s Unpacking sg3-utils (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 348s Preparing to unpack .../sg3-utils-udev_1.48-3ubuntu2_all.deb ... 348s Unpacking sg3-utils-udev (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 348s Setting up libsgutils2-1.48:amd64 (1.48-3ubuntu2) ... 348s Setting up libatomic1:amd64 (15.2.0-12ubuntu1) ... 348s Setting up libstdc++6:amd64 (15.2.0-12ubuntu1) ... 348s Setting up sg3-utils (1.48-3ubuntu2) ... 348s Setting up sg3-utils-udev (1.48-3ubuntu2) ... 348s update-initramfs: deferring update (trigger activated) 348s Processing triggers for libc-bin (2.42-2ubuntu4) ... 348s Processing triggers for man-db (2.13.1-1) ... 349s Processing triggers for initramfs-tools (0.150ubuntu7) ... 349s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 357s autopkgtest [19:30:32]: upgrading testbed (apt dist-upgrade and autopurge) 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 358s Calculating upgrade... 358s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 358s Reading package lists... 358s Building dependency tree... 358s Reading state information... 358s Solving dependencies... 358s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 359s autopkgtest [19:30:34]: rebooting testbed after setup commands that affected boot 398s Reading package lists... 398s Building dependency tree... 398s Reading state information... 398s Solving dependencies... 399s The following NEW packages will be installed: 399s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 399s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 399s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 399s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 399s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 399s gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu 399s icu-devtools javascript-common libabsl20260107 libaec0 libaom3 399s libarmadillo15 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 399s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 399s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 399s libgav1-2 libgcc-15-dev libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 399s libgfortran-15-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 399s libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 399s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libhwy1t64 399s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 399s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 399s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 399s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 399s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 399s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 399s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 399s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 399s libmpc3 libmuparser2v5 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 399s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 399s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 399s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 399s libpoppler147 libpq5 libproj25 libqhull-r8.0 libquadmath0 libreadline-dev 399s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 399s libstdc++-15-dev libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 399s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 399s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 399s libxrender1 libxss1 libxt6t64 libyuv0 libzstd-dev mysql-common 399s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 399s pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core r-base-dev 399s r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix 399s r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr 399s r-cran-cftime r-cran-class r-cran-classint r-cran-cli r-cran-clue 399s r-cran-cluster r-cran-codetools r-cran-collapse r-cran-commonmark 399s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 399s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 399s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 399s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 399s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 399s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 399s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 399s r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 399s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 399s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 399s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 399s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 399s r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme r-cran-openssl 399s r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar r-cran-pkgbuild 399s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm r-cran-polyclip 399s r-cran-praise r-cran-processx r-cran-promises r-cran-proxy r-cran-ps 399s r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs r-cran-raster 399s r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 399s r-cran-rdpack r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 399s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 399s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 399s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 399s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 399s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 399s r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stars r-cran-stringi 399s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 399s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 399s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 399s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 399s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 399s unzip x11-common xdg-utils zip zlib1g-dev 399s 0 upgraded, 344 newly installed, 0 to remove and 0 not upgraded. 399s Need to get 401 MB of archives. 399s After this operation, 1152 MB of additional disk space will be used. 399s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 399s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 399s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 401s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 401s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 401s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 401s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 401s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 401s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 401s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 401s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 401s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 402s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 402s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 402s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 402s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 402s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 406s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 406s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 406s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 406s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 406s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 407s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 407s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 407s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 407s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 407s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 407s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 407s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 407s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 407s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 407s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 407s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 407s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 407s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 408s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 408s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 408s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 408s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 408s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 409s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 409s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 409s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 409s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 409s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 409s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 409s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 409s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 409s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 409s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 409s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 409s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 409s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 409s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 409s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 409s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 409s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 409s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 409s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 409s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 409s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 409s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 409s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build1 [37.0 kB] 409s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 409s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 409s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 409s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 409s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 409s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 409s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 409s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 409s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 409s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 409s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 409s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 409s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 410s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 410s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 410s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 410s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 410s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 410s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 410s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 410s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 410s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 410s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 410s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 410s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 410s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 410s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 410s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 410s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 410s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 410s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 410s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 410s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 410s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 410s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 410s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 410s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 410s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 410s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 410s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 410s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 410s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 410s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 410s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 410s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 410s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 410s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 410s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 410s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 410s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 410s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 410s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 411s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 411s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 411s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 411s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 411s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 411s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 411s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 411s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 412s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu2 [296 kB] 412s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 412s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 412s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 412s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 412s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 412s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 412s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 412s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 412s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 412s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 412s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 412s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 412s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 412s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 412s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 412s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 412s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 412s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 412s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 412s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 412s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 412s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 412s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 412s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 412s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 412s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 412s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 412s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 412s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 412s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 412s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 412s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 412s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 412s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 412s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 412s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 412s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 412s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 412s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 412s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 412s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 412s Get:166 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 412s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [376 kB] 412s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 412s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 412s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 412s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 412s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 414s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 414s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 414s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 414s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 415s Get:177 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 415s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 415s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 415s Get:180 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 415s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 415s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 415s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 415s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 416s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 416s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 416s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 416s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 416s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 416s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 416s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 416s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 416s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 416s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 416s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 416s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 416s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 416s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 416s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 416s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 416s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 416s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 416s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 416s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 416s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 416s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 416s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 416s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 416s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 416s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 417s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 417s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 417s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 417s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 417s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 417s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 417s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 417s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 417s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 417s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 417s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 417s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 417s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 417s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 417s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 417s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 417s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 417s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 417s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 417s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 417s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 418s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 418s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 418s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 418s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 418s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 418s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 418s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 418s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 418s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 418s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 418s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 418s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 418s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 418s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 418s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 418s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 418s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 418s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 418s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 418s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 418s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 418s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 418s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 419s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 419s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 419s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 419s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 419s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 419s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 419s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 419s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 419s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 419s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 419s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 419s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 419s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 419s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 420s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 420s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 420s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 420s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 420s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 420s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 420s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 421s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 421s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 421s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 421s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 421s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 421s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 421s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 421s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 421s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 421s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 421s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 421s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 421s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 421s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 421s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 421s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 421s Get:292 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 422s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 422s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 422s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 422s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 422s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 422s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 424s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 424s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 424s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 424s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rnetcdf amd64 2.9-2-1 [254 kB] 424s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 424s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 424s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 424s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 424s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 424s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 424s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 424s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 424s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 424s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 425s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 425s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 425s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 425s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 425s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 425s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 425s Get:319 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-raster amd64 3.6-32-1 [3186 kB] 425s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 425s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 425s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 425s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 425s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 425s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 426s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 426s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 426s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 426s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 426s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 426s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 427s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 427s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 427s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 427s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 427s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 427s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 427s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 427s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 428s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 428s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 428s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 428s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 428s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 429s Preconfiguring packages ... 429s Fetched 401 MB in 30s (13.6 MB/s) 429s Selecting previously unselected package libisl23:amd64. 429s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 429s Preparing to unpack .../000-libisl23_0.27-1build1_amd64.deb ... 429s Unpacking libisl23:amd64 (0.27-1build1) ... 429s Selecting previously unselected package libmpc3:amd64. 429s Preparing to unpack .../001-libmpc3_1.3.1-2_amd64.deb ... 429s Unpacking libmpc3:amd64 (1.3.1-2) ... 429s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 429s Preparing to unpack .../002-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 429s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package cpp-15. 430s Preparing to unpack .../003-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package cpp-x86-64-linux-gnu. 430s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 430s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 430s Selecting previously unselected package cpp. 430s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 430s Unpacking cpp (4:15.2.0-4ubuntu1) ... 430s Selecting previously unselected package libcc1-0:amd64. 430s Preparing to unpack .../006-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libgomp1:amd64. 430s Preparing to unpack .../007-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libitm1:amd64. 430s Preparing to unpack .../008-libitm1_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libasan8:amd64. 430s Preparing to unpack .../009-libasan8_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package liblsan0:amd64. 430s Preparing to unpack .../010-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libtsan2:amd64. 430s Preparing to unpack .../011-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libubsan1:amd64. 430s Preparing to unpack .../012-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libhwasan0:amd64. 430s Preparing to unpack .../013-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libquadmath0:amd64. 430s Preparing to unpack .../014-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package libgcc-15-dev:amd64. 430s Preparing to unpack .../015-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 430s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 430s Preparing to unpack .../016-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 430s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 431s Selecting previously unselected package gcc-15. 431s Preparing to unpack .../017-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 431s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 431s Selecting previously unselected package gcc-x86-64-linux-gnu. 431s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 431s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 431s Selecting previously unselected package gcc. 431s Preparing to unpack .../019-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 431s Unpacking gcc (4:15.2.0-4ubuntu1) ... 431s Selecting previously unselected package libstdc++-15-dev:amd64. 431s Preparing to unpack .../020-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 431s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 431s Selecting previously unselected package g++-15-x86-64-linux-gnu. 431s Preparing to unpack .../021-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 431s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 431s Selecting previously unselected package g++-15. 431s Preparing to unpack .../022-g++-15_15.2.0-12ubuntu1_amd64.deb ... 431s Unpacking g++-15 (15.2.0-12ubuntu1) ... 431s Selecting previously unselected package g++-x86-64-linux-gnu. 431s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 431s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 431s Selecting previously unselected package g++. 431s Preparing to unpack .../024-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 431s Unpacking g++ (4:15.2.0-4ubuntu1) ... 431s Selecting previously unselected package build-essential. 431s Preparing to unpack .../025-build-essential_12.12ubuntu2_amd64.deb ... 431s Unpacking build-essential (12.12ubuntu2) ... 431s Selecting previously unselected package dctrl-tools. 431s Preparing to unpack .../026-dctrl-tools_2.24-3build4_amd64.deb ... 431s Unpacking dctrl-tools (2.24-3build4) ... 431s Selecting previously unselected package fonts-dejavu-mono. 431s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8build1_all.deb ... 431s Unpacking fonts-dejavu-mono (2.37-8build1) ... 431s Selecting previously unselected package fonts-dejavu-core. 431s Preparing to unpack .../028-fonts-dejavu-core_2.37-8build1_all.deb ... 431s Unpacking fonts-dejavu-core (2.37-8build1) ... 431s Selecting previously unselected package fontconfig-config. 431s Preparing to unpack .../029-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 432s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 432s Selecting previously unselected package libfontconfig1:amd64. 432s Preparing to unpack .../030-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 432s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 432s Selecting previously unselected package fontconfig. 432s Preparing to unpack .../031-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 432s Unpacking fontconfig (2.17.1-3ubuntu1) ... 432s Selecting previously unselected package fonts-font-awesome. 432s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 432s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 432s Selecting previously unselected package fonts-glyphicons-halflings. 432s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 432s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 432s Selecting previously unselected package fonts-mathjax. 432s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 432s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 432s Selecting previously unselected package gdal-data. 432s Preparing to unpack .../035-gdal-data_3.12.1+dfsg-1_all.deb ... 432s Unpacking gdal-data (3.12.1+dfsg-1) ... 432s Selecting previously unselected package gdal-plugins:amd64. 432s Preparing to unpack .../036-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 432s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 432s Selecting previously unselected package libgfortran5:amd64. 432s Preparing to unpack .../037-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 432s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 432s Selecting previously unselected package libgfortran-15-dev:amd64. 432s Preparing to unpack .../038-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 432s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 432s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 432s Preparing to unpack .../039-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 432s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 432s Selecting previously unselected package gfortran-15. 432s Preparing to unpack .../040-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 432s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 432s Selecting previously unselected package gfortran-x86-64-linux-gnu. 432s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 432s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 432s Selecting previously unselected package gfortran. 432s Preparing to unpack .../042-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 432s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 432s Selecting previously unselected package icu-devtools. 432s Preparing to unpack .../043-icu-devtools_78.2-1ubuntu1_amd64.deb ... 432s Unpacking icu-devtools (78.2-1ubuntu1) ... 432s Selecting previously unselected package javascript-common. 432s Preparing to unpack .../044-javascript-common_12+nmu1_all.deb ... 432s Unpacking javascript-common (12+nmu1) ... 432s Selecting previously unselected package libabsl20260107:amd64. 432s Preparing to unpack .../045-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 432s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 432s Selecting previously unselected package libaec0:amd64. 432s Preparing to unpack .../046-libaec0_1.1.5-1_amd64.deb ... 432s Unpacking libaec0:amd64 (1.1.5-1) ... 432s Selecting previously unselected package libaom3:amd64. 432s Preparing to unpack .../047-libaom3_3.13.1-2_amd64.deb ... 432s Unpacking libaom3:amd64 (3.13.1-2) ... 432s Selecting previously unselected package libblas3:amd64. 432s Preparing to unpack .../048-libblas3_3.12.1-7ubuntu1_amd64.deb ... 432s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 432s Selecting previously unselected package liblapack3:amd64. 433s Preparing to unpack .../049-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 433s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 433s Selecting previously unselected package libarpack2t64:amd64. 433s Preparing to unpack .../050-libarpack2t64_3.9.1-6_amd64.deb ... 433s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 433s Selecting previously unselected package libsuperlu7:amd64. 433s Preparing to unpack .../051-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 433s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 433s Selecting previously unselected package libarmadillo15. 433s Preparing to unpack .../052-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 433s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 433s Selecting previously unselected package libdav1d7:amd64. 433s Preparing to unpack .../053-libdav1d7_1.5.3-1_amd64.deb ... 433s Unpacking libdav1d7:amd64 (1.5.3-1) ... 433s Selecting previously unselected package libgav1-2:amd64. 433s Preparing to unpack .../054-libgav1-2_0.20.0-2build1_amd64.deb ... 433s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 433s Selecting previously unselected package libjpeg-turbo8:amd64. 433s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 433s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 433s Selecting previously unselected package libjpeg8:amd64. 433s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_amd64.deb ... 433s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 433s Selecting previously unselected package libyuv0:amd64. 433s Preparing to unpack .../057-libyuv0_0.0.1922.20260106-1_amd64.deb ... 433s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 433s Selecting previously unselected package libavif16:amd64. 433s Preparing to unpack .../058-libavif16_1.3.0-1ubuntu3_amd64.deb ... 433s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 433s Selecting previously unselected package libblas-dev:amd64. 433s 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previously unselected package libde265-0:amd64. 433s Preparing to unpack .../070-libde265-0_1.0.16-1build1_amd64.deb ... 433s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 433s Selecting previously unselected package libdeflate0:amd64. 433s Preparing to unpack .../071-libdeflate0_1.23-2_amd64.deb ... 433s Unpacking libdeflate0:amd64 (1.23-2) ... 433s Selecting previously unselected package libdeflate-dev:amd64. 433s Preparing to unpack .../072-libdeflate-dev_1.23-2_amd64.deb ... 433s Unpacking libdeflate-dev:amd64 (1.23-2) ... 433s Selecting previously unselected package libfyba0t64:amd64. 433s Preparing to unpack .../073-libfyba0t64_4.1.1-11build2_amd64.deb ... 433s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 433s Selecting previously unselected package libminizip1t64:amd64. 433s Preparing to unpack .../074-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 433s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 433s Selecting previously unselected package libfreexl1:amd64. 433s Preparing to unpack .../075-libfreexl1_2.0.0-1build3_amd64.deb ... 433s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 433s Selecting previously unselected package libgeos3.14.1:amd64. 433s Preparing to unpack .../076-libgeos3.14.1_3.14.1-2_amd64.deb ... 433s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 433s Selecting previously unselected package libgeos-c1t64:amd64. 433s Preparing to unpack .../077-libgeos-c1t64_3.14.1-2_amd64.deb ... 433s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 433s Selecting previously unselected package proj-data. 433s Preparing to unpack .../078-proj-data_9.7.1-1_all.deb ... 433s Unpacking proj-data (9.7.1-1) ... 434s Selecting previously unselected package libjbig0:amd64. 434s Preparing to unpack .../079-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 434s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 434s Selecting previously unselected package liblerc4:amd64. 434s Preparing to unpack .../080-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 434s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 434s Selecting previously unselected package libsharpyuv0:amd64. 434s Preparing to unpack .../081-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 434s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 434s Selecting previously unselected package libwebp7:amd64. 434s Preparing to unpack .../082-libwebp7_1.5.0-0.1build1_amd64.deb ... 434s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 434s Selecting previously unselected package libtiff6:amd64. 434s Preparing to unpack .../083-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 434s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 434s Selecting previously unselected package libproj25:amd64. 434s Preparing to unpack .../084-libproj25_9.7.1-1_amd64.deb ... 434s Unpacking libproj25:amd64 (9.7.1-1) ... 434s Selecting previously unselected package libgeotiff5:amd64. 434s Preparing to unpack .../085-libgeotiff5_1.7.4-1_amd64.deb ... 434s Unpacking libgeotiff5:amd64 (1.7.4-1) ... 434s Selecting previously unselected package libgif7:amd64. 434s Preparing to unpack .../086-libgif7_5.2.2-1ubuntu3_amd64.deb ... 434s Unpacking libgif7:amd64 (5.2.2-1ubuntu3) ... 434s Selecting previously unselected package libsz2:amd64. 434s Preparing to unpack .../087-libsz2_1.1.5-1_amd64.deb ... 434s Unpacking libsz2:amd64 (1.1.5-1) ... 434s Selecting previously unselected package libhdf4-0:amd64. 434s Preparing to unpack .../088-libhdf4-0_4.3.1-2_amd64.deb ... 434s Unpacking libhdf4-0:amd64 (4.3.1-2) ... 434s Selecting previously unselected package libhdf5-310:amd64. 434s Preparing to unpack .../089-libhdf5-310_1.14.6+repack-2_amd64.deb ... 434s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 434s Selecting previously unselected package libheif-plugin-aomdec:amd64. 434s Preparing to unpack .../090-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 434s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 434s Selecting previously unselected package libheif-plugin-libde265:amd64. 434s Preparing to unpack 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(0.9.8+dfsg-2) ... 434s Selecting previously unselected package libkmlbase1t64:amd64. 434s Preparing to unpack .../097-libkmlbase1t64_1.3.0-13_amd64.deb ... 434s Unpacking libkmlbase1t64:amd64 (1.3.0-13) ... 434s Selecting previously unselected package libkmldom1t64:amd64. 434s Preparing to unpack .../098-libkmldom1t64_1.3.0-13_amd64.deb ... 434s Unpacking libkmldom1t64:amd64 (1.3.0-13) ... 434s Selecting previously unselected package libkmlengine1t64:amd64. 434s Preparing to unpack .../099-libkmlengine1t64_1.3.0-13_amd64.deb ... 434s Unpacking libkmlengine1t64:amd64 (1.3.0-13) ... 434s Selecting previously unselected package libmuparser2v5:amd64. 434s Preparing to unpack .../100-libmuparser2v5_2.3.4-2_amd64.deb ... 434s Unpacking libmuparser2v5:amd64 (2.3.4-2) ... 434s Selecting previously unselected package mysql-common. 434s Preparing to unpack .../101-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 434s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 434s Selecting previously unselected package libmysqlclient24:amd64. 434s Preparing to unpack .../102-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 434s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 434s Selecting previously unselected package libhdf5-hl-310:amd64. 434s Preparing to unpack .../103-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 434s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 434s Selecting previously unselected package libnetcdf22:amd64. 434s Preparing to unpack .../104-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 434s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 434s Selecting previously unselected package libltdl7:amd64. 434s Preparing to unpack .../105-libltdl7_2.5.4-9_amd64.deb ... 434s Unpacking libltdl7:amd64 (2.5.4-9) ... 434s Selecting previously unselected package libodbc2:amd64. 434s Preparing to unpack .../106-libodbc2_2.3.14-1_amd64.deb ... 434s Unpacking libodbc2:amd64 (2.3.14-1) ... 434s Selecting previously unselected package unixodbc-common. 434s Preparing to unpack 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(18.1-2) ... 435s Selecting previously unselected package libqhull-r8.0:amd64. 435s Preparing to unpack .../113-libqhull-r8.0_2020.2-8_amd64.deb ... 435s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 435s Selecting previously unselected package librttopo1:amd64. 435s Preparing to unpack .../114-librttopo1_1.1.0-4_amd64.deb ... 435s Unpacking librttopo1:amd64 (1.1.0-4) ... 435s Selecting previously unselected package libspatialite8t64:amd64. 435s Preparing to unpack .../115-libspatialite8t64_5.1.0-3ubuntu1_amd64.deb ... 435s Unpacking libspatialite8t64:amd64 (5.1.0-3ubuntu1) ... 435s Selecting previously unselected package libxerces-c3.2t64:amd64. 435s Preparing to unpack .../116-libxerces-c3.2t64_3.2.4+debian-1.3build2_amd64.deb ... 435s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build2) ... 435s Selecting previously unselected package libgdal38:amd64. 435s Preparing to unpack .../117-libgdal38_3.12.1+dfsg-1_amd64.deb ... 435s Unpacking libgdal38:amd64 (3.12.1+dfsg-1) ... 435s Selecting previously unselected package libgraphite2-3:amd64. 435s Preparing to unpack .../118-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 435s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 435s Selecting previously unselected package libharfbuzz0b:amd64. 435s Preparing to unpack .../119-libharfbuzz0b_12.3.1-1_amd64.deb ... 435s Unpacking libharfbuzz0b:amd64 (12.3.1-1) ... 435s Selecting previously unselected package x11-common. 435s Preparing to unpack .../120-x11-common_1%3a7.7+24ubuntu1_all.deb ... 435s Unpacking x11-common (1:7.7+24ubuntu1) ... 435s Selecting previously unselected package libice6:amd64. 435s Preparing to unpack .../121-libice6_2%3a1.1.1-1build1_amd64.deb ... 435s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 435s Selecting previously unselected package libicu-dev:amd64. 435s Preparing to unpack .../122-libicu-dev_78.2-1ubuntu1_amd64.deb ... 435s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 435s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 435s Preparing to unpack .../123-libjpeg-turbo8-dev_2.1.5-4ubuntu2_amd64.deb ... 435s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu2) ... 435s Selecting previously unselected package libjpeg8-dev:amd64. 435s Preparing to unpack .../124-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 435s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 435s Selecting previously unselected package libjpeg-dev:amd64. 435s Preparing to unpack .../125-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 435s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 435s Selecting previously unselected package libjs-bootstrap. 435s Preparing to unpack .../126-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 435s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 435s Selecting previously unselected package libjs-popper.js. 435s Preparing to unpack .../127-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 435s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 435s Selecting previously unselected package libjs-bootstrap4. 435s Preparing to unpack .../128-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 436s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 436s Selecting previously unselected package libjs-d3. 436s Preparing to unpack .../129-libjs-d3_3.5.17-4build1_all.deb ... 436s Unpacking libjs-d3 (3.5.17-4build1) ... 436s Selecting previously unselected package libjs-es5-shim. 436s Preparing to unpack .../130-libjs-es5-shim_4.6.7-2_all.deb ... 436s Unpacking libjs-es5-shim (4.6.7-2) ... 436s Selecting previously unselected package libjs-highlight.js. 436s Preparing to unpack .../131-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 436s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 436s Selecting previously unselected package libjs-jquery. 436s Preparing to unpack .../132-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 436s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 436s Selecting previously unselected package libjs-jquery-datatables. 436s Preparing to unpack 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libpaper2:amd64 (2.2.5-0.3build1) ... 436s Selecting previously unselected package libpaper-utils. 436s Preparing to unpack .../149-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 436s Unpacking libpaper-utils (2.2.5-0.3build1) ... 436s Selecting previously unselected package libpcre2-16-0:amd64. 436s Preparing to unpack .../150-libpcre2-16-0_10.46-1_amd64.deb ... 436s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 436s Selecting previously unselected package libpcre2-32-0:amd64. 436s Preparing to unpack .../151-libpcre2-32-0_10.46-1_amd64.deb ... 436s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 436s Selecting previously unselected package libpcre2-posix3:amd64. 436s Preparing to unpack .../152-libpcre2-posix3_10.46-1_amd64.deb ... 436s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 436s Selecting previously unselected package libpcre2-dev:amd64. 436s Preparing to unpack .../153-libpcre2-dev_10.46-1_amd64.deb ... 436s Unpacking libpcre2-dev:amd64 (10.46-1) ... 436s Selecting previously unselected package libpkgconf3:amd64. 436s Preparing to unpack .../154-libpkgconf3_1.8.1-4build1_amd64.deb ... 436s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 436s Selecting previously unselected package zlib1g-dev:amd64. 436s Preparing to unpack .../155-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 436s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 436s Selecting previously unselected package libpng-dev:amd64. 436s Preparing to unpack .../156-libpng-dev_1.6.54-1_amd64.deb ... 436s Unpacking libpng-dev:amd64 (1.6.54-1) ... 437s Selecting previously unselected package libreadline-dev:amd64. 437s Preparing to unpack .../157-libreadline-dev_8.3-3_amd64.deb ... 437s Unpacking libreadline-dev:amd64 (8.3-3) ... 437s Selecting previously unselected package libsm6:amd64. 437s Preparing to unpack .../158-libsm6_2%3a1.2.6-1_amd64.deb ... 437s Unpacking libsm6:amd64 (2:1.2.6-1) ... 437s Selecting previously unselected package libtcl8.6:amd64. 437s Preparing to unpack .../159-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 437s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 437s Selecting previously unselected package libxft2:amd64. 437s Preparing to unpack .../160-libxft2_2.3.6-1build2_amd64.deb ... 437s Unpacking libxft2:amd64 (2.3.6-1build2) ... 437s Selecting previously unselected package libxss1:amd64. 437s Preparing to unpack .../161-libxss1_1%3a1.2.3-1build4_amd64.deb ... 437s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 437s Selecting previously unselected package libtk8.6:amd64. 437s Preparing to unpack .../162-libtk8.6_8.6.17-1_amd64.deb ... 437s Unpacking libtk8.6:amd64 (8.6.17-1) ... 437s Selecting previously unselected package libudunits2-data. 437s Preparing to unpack .../163-libudunits2-data_2.2.28-8_all.deb ... 437s Unpacking libudunits2-data (2.2.28-8) ... 437s Selecting previously unselected package libudunits2-0:amd64. 437s Preparing to unpack .../164-libudunits2-0_2.2.28-8_amd64.deb ... 437s Unpacking libudunits2-0:amd64 (2.2.28-8) ... 437s Selecting previously unselected package libxt6t64:amd64. 437s Preparing to unpack .../165-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 437s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 437s Selecting previously unselected package libzstd-dev:amd64. 437s Preparing to unpack .../166-libzstd-dev_1.5.7+dfsg-2_amd64.deb ... 437s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-2) ... 437s Selecting previously unselected package node-bootstrap-sass. 437s Preparing to unpack .../167-node-bootstrap-sass_3.4.3-2_all.deb ... 437s Unpacking node-bootstrap-sass (3.4.3-2) ... 437s Selecting previously unselected package node-html5shiv. 437s Preparing to unpack .../168-node-html5shiv_3.7.3+dfsg-5_all.deb ... 437s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 437s Selecting previously unselected package node-normalize.css. 437s Preparing to unpack .../169-node-normalize.css_8.0.1-5.1_all.deb ... 437s Unpacking node-normalize.css (8.0.1-5.1) ... 437s Selecting previously unselected package pandoc-data. 437s Preparing to unpack .../170-pandoc-data_3.1.11.1-3build1_all.deb ... 437s Unpacking pandoc-data (3.1.11.1-3build1) ... 437s Selecting previously unselected package pandoc. 437s Preparing to unpack .../171-pandoc_3.1.11.1+ds-4_amd64.deb ... 437s Unpacking pandoc (3.1.11.1+ds-4) ... 438s Selecting previously unselected package zip. 438s Preparing to unpack .../172-zip_3.0-15ubuntu2_amd64.deb ... 438s Unpacking zip (3.0-15ubuntu2) ... 438s Selecting previously unselected package unzip. 438s Preparing to unpack .../173-unzip_6.0-29ubuntu1_amd64.deb ... 438s Unpacking unzip (6.0-29ubuntu1) ... 438s Selecting previously unselected package xdg-utils. 438s Preparing to unpack .../174-xdg-utils_1.2.1-2ubuntu2_all.deb ... 438s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 438s Selecting previously unselected package r-base-core. 438s Preparing to unpack .../175-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 438s Unpacking r-base-core (4.5.2-1ubuntu2) ... 438s Selecting previously unselected package liblzma-dev:amd64. 438s Preparing to unpack .../176-liblzma-dev_5.8.2-2_amd64.deb ... 438s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 438s Selecting previously unselected package pkgconf-bin. 438s Preparing to unpack .../177-pkgconf-bin_1.8.1-4build1_amd64.deb ... 438s Unpacking pkgconf-bin (1.8.1-4build1) ... 438s Selecting previously unselected package pkgconf:amd64. 438s Preparing to unpack .../178-pkgconf_1.8.1-4build1_amd64.deb ... 438s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 438s Selecting previously unselected package libtirpc-dev:amd64. 438s Preparing to unpack .../179-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 438s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 438s Selecting previously unselected package r-base-dev. 438s Preparing to unpack .../180-r-base-dev_4.5.2-1ubuntu2_all.deb ... 438s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 438s Selecting previously unselected package pkg-r-autopkgtest. 438s Preparing to unpack .../181-pkg-r-autopkgtest_20250812_all.deb ... 438s Unpacking pkg-r-autopkgtest (20250812) ... 438s Selecting previously unselected package r-cran-abind. 438s Preparing to unpack .../182-r-cran-abind_1.4-8-1build1_all.deb ... 438s Unpacking r-cran-abind (1.4-8-1build1) ... 438s Selecting previously unselected package r-cran-cli. 438s Preparing to unpack .../183-r-cran-cli_3.6.4-1_amd64.deb ... 438s Unpacking r-cran-cli (3.6.4-1) ... 439s Selecting previously unselected package r-cran-generics. 439s Preparing to unpack .../184-r-cran-generics_0.1.4-1_all.deb ... 439s Unpacking r-cran-generics (0.1.4-1) ... 439s Selecting previously unselected package r-cran-glue. 439s Preparing to unpack .../185-r-cran-glue_1.8.0-1_amd64.deb ... 439s Unpacking r-cran-glue (1.8.0-1) ... 439s Selecting previously unselected package r-cran-rlang. 439s Preparing to unpack .../186-r-cran-rlang_1.1.5-3_amd64.deb ... 439s Unpacking r-cran-rlang (1.1.5-3) ... 439s Selecting previously unselected package r-cran-lifecycle. 439s Preparing to unpack .../187-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 439s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 439s Selecting previously unselected package r-cran-magrittr. 439s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_amd64.deb ... 439s Unpacking r-cran-magrittr (2.0.3-1) ... 439s Selecting previously unselected package r-cran-utf8. 439s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_amd64.deb ... 439s Unpacking r-cran-utf8 (1.2.4-1) ... 439s Selecting previously unselected package r-cran-vctrs. 439s Preparing to unpack .../190-r-cran-vctrs_0.6.5-1_amd64.deb ... 439s Unpacking r-cran-vctrs (0.6.5-1) ... 439s Selecting previously unselected package r-cran-pillar. 439s Preparing to unpack .../191-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 439s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 439s Selecting previously unselected package r-cran-r6. 439s Preparing to unpack .../192-r-cran-r6_2.6.1-1_all.deb ... 439s Unpacking r-cran-r6 (2.6.1-1) ... 439s Selecting previously unselected package r-cran-fansi. 439s Preparing to unpack .../193-r-cran-fansi_1.0.6-2_amd64.deb ... 439s Unpacking r-cran-fansi (1.0.6-2) ... 439s Selecting previously unselected package r-cran-pkgconfig. 439s Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 439s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 439s Selecting previously unselected package r-cran-tibble. 439s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 439s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 439s Selecting previously unselected package r-cran-withr. 439s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 439s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 439s Selecting previously unselected package r-cran-tidyselect. 439s Preparing to unpack .../197-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 439s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 439s Selecting previously unselected package r-cran-dplyr. 439s Preparing to unpack .../198-r-cran-dplyr_1.1.4-4_amd64.deb ... 439s Unpacking r-cran-dplyr (1.1.4-4) ... 439s Selecting previously unselected package r-cran-purrr. 439s Preparing to unpack .../199-r-cran-purrr_1.0.4-1_amd64.deb ... 439s Unpacking r-cran-purrr (1.0.4-1) ... 439s Selecting previously unselected package r-cran-mass. 439s Preparing to unpack .../200-r-cran-mass_7.3-65-1_amd64.deb ... 439s Unpacking r-cran-mass (7.3-65-1) ... 439s Selecting previously unselected package r-cran-class. 439s Preparing to unpack .../201-r-cran-class_7.3-23-1_amd64.deb ... 439s Unpacking r-cran-class (7.3-23-1) ... 439s Selecting previously unselected package r-cran-proxy. 439s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_amd64.deb ... 439s Unpacking r-cran-proxy (0.4-27-1) ... 439s Selecting previously unselected package r-cran-e1071. 439s Preparing to unpack .../203-r-cran-e1071_1.7-17-1_amd64.deb ... 439s Unpacking r-cran-e1071 (1.7-17-1) ... 439s Selecting previously unselected package r-cran-kernsmooth. 439s Preparing to unpack .../204-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 439s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 439s Selecting previously unselected package r-cran-classint. 439s Preparing to unpack .../205-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 439s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 439s Selecting previously unselected package r-cran-dbi. 439s Preparing to unpack .../206-r-cran-dbi_1.2.3-1build1_all.deb ... 439s Unpacking r-cran-dbi (1.2.3-1build1) ... 439s Selecting previously unselected package r-cran-littler. 439s Preparing to unpack .../207-r-cran-littler_0.3.21-2_amd64.deb ... 439s Unpacking r-cran-littler (0.3.21-2) ... 439s Selecting previously unselected package r-cran-pkgkitten. 439s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ... 439s Unpacking r-cran-pkgkitten (0.2.4-1) ... 439s Selecting previously unselected package r-cran-rcpp. 439s Preparing to unpack .../209-r-cran-rcpp_1.1.0-1_amd64.deb ... 439s Unpacking r-cran-rcpp (1.1.0-1) ... 439s Selecting previously unselected package r-cran-wk. 439s Preparing to unpack .../210-r-cran-wk_0.9.4-1_amd64.deb ... 439s Unpacking r-cran-wk (0.9.4-1) ... 440s Selecting previously unselected package r-cran-s2. 440s Preparing to unpack .../211-r-cran-s2_1.1.9-1build1_amd64.deb ... 440s Unpacking r-cran-s2 (1.1.9-1build1) ... 440s Selecting previously unselected package r-cran-units. 440s Preparing to unpack .../212-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 440s Unpacking r-cran-units (0.8-7+dfsg-2) ... 440s Selecting previously unselected package r-cran-sf. 440s Preparing to unpack .../213-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 440s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 440s Selecting previously unselected package r-cran-areal. 440s Preparing to unpack .../214-r-cran-areal_0.1.8+dfsg-2_all.deb ... 440s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 440s Selecting previously unselected package r-cran-sys. 440s Preparing to unpack .../215-r-cran-sys_3.4.3-1_amd64.deb ... 440s Unpacking r-cran-sys (3.4.3-1) ... 440s Selecting previously unselected package r-cran-askpass. 440s Preparing to unpack .../216-r-cran-askpass_1.2.1-1_amd64.deb ... 440s Unpacking r-cran-askpass (1.2.1-1) ... 440s Selecting previously unselected package r-cran-base64enc. 440s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 440s Unpacking r-cran-base64enc (0.1-3-3build1) ... 440s Selecting previously unselected package r-cran-bdsmatrix. 440s Preparing to unpack .../218-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 440s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 440s Selecting previously unselected package r-cran-brio. 440s Preparing to unpack .../219-r-cran-brio_1.1.5-1_amd64.deb ... 440s Unpacking r-cran-brio (1.1.5-1) ... 440s Selecting previously unselected package r-cran-fastmap. 440s Preparing to unpack .../220-r-cran-fastmap_1.2.0-1_amd64.deb ... 440s Unpacking r-cran-fastmap (1.2.0-1) ... 440s Selecting previously unselected package r-cran-cachem. 440s Preparing to unpack .../221-r-cran-cachem_1.1.0-1_amd64.deb ... 440s Unpacking r-cran-cachem (1.1.0-1) ... 440s Selecting previously unselected package r-cran-digest. 440s Preparing to unpack .../222-r-cran-digest_0.6.39-1_amd64.deb ... 440s Unpacking r-cran-digest (0.6.39-1) ... 440s Selecting previously unselected package r-cran-htmltools. 440s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 440s Unpacking r-cran-htmltools (0.5.8.1-1) ... 440s Selecting previously unselected package r-cran-jquerylib. 440s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 440s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 440s Selecting previously unselected package r-cran-jsonlite. 440s Preparing to unpack .../225-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 440s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 440s Selecting previously unselected package r-cran-memoise. 440s Preparing to unpack .../226-r-cran-memoise_2.0.1-1build1_all.deb ... 440s Unpacking r-cran-memoise (2.0.1-1build1) ... 440s Selecting previously unselected package r-cran-mime. 440s Preparing to unpack .../227-r-cran-mime_0.12-2_amd64.deb ... 440s Unpacking r-cran-mime (0.12-2) ... 440s Selecting previously unselected package r-cran-fs. 440s Preparing to unpack .../228-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 440s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 440s Selecting previously unselected package r-cran-rappdirs. 440s Preparing to unpack .../229-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 440s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 440s Selecting previously unselected package r-cran-sass. 440s Preparing to unpack .../230-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 440s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 440s Selecting previously unselected package r-cran-bslib. 440s Preparing to unpack .../231-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 440s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 440s Selecting previously unselected package r-cran-cairo. 440s Preparing to unpack .../232-r-cran-cairo_1.6-2-1_amd64.deb ... 440s Unpacking r-cran-cairo (1.6-2-1) ... 440s Selecting previously unselected package r-cran-ps. 440s Preparing to unpack .../233-r-cran-ps_1.9.0-1_amd64.deb ... 440s Unpacking r-cran-ps (1.9.0-1) ... 440s Selecting previously unselected package r-cran-processx. 440s Preparing to unpack .../234-r-cran-processx_3.8.6-1_amd64.deb ... 440s Unpacking r-cran-processx (3.8.6-1) ... 440s Selecting previously unselected package r-cran-callr. 440s Preparing to unpack .../235-r-cran-callr_3.7.6-1_all.deb ... 440s Unpacking r-cran-callr (3.7.6-1) ... 440s Selecting previously unselected package r-cran-cftime. 440s Preparing to unpack .../236-r-cran-cftime_1.7.2-1_all.deb ... 440s Unpacking r-cran-cftime (1.7.2-1) ... 440s Selecting previously unselected package r-cran-cluster. 440s Preparing to unpack .../237-r-cran-cluster_2.1.8.1-1_amd64.deb ... 440s Unpacking r-cran-cluster (2.1.8.1-1) ... 440s Selecting previously unselected package r-cran-clue. 440s Preparing to unpack .../238-r-cran-clue_0.3-66-1_amd64.deb ... 440s Unpacking r-cran-clue (0.3-66-1) ... 440s Selecting previously unselected package r-cran-codetools. 440s Preparing to unpack .../239-r-cran-codetools_0.2-20-1build1_all.deb ... 440s Unpacking r-cran-codetools (0.2-20-1build1) ... 440s Selecting previously unselected package r-cran-collapse. 441s Preparing to unpack .../240-r-cran-collapse_2.1.0-1_amd64.deb ... 441s Unpacking r-cran-collapse (2.1.0-1) ... 441s Selecting previously unselected package r-cran-commonmark. 441s Preparing to unpack .../241-r-cran-commonmark_1.9.5-1_amd64.deb ... 441s Unpacking r-cran-commonmark (1.9.5-1) ... 441s Selecting previously unselected package r-cran-lazyeval. 441s Preparing to unpack .../242-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 441s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 441s Selecting previously unselected package r-cran-rex. 441s Preparing to unpack .../243-r-cran-rex_1.2.1-1build1_all.deb ... 441s Unpacking r-cran-rex (1.2.1-1build1) ... 441s Selecting previously unselected package r-cran-curl. 441s Preparing to unpack .../244-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 441s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 441s Selecting previously unselected package r-cran-openssl. 441s Preparing to unpack .../245-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 441s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 441s Selecting previously unselected package r-cran-httr. 441s Preparing to unpack .../246-r-cran-httr_1.4.7+dfsg-1_all.deb ... 441s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 441s Selecting previously unselected package r-cran-crayon. 441s Preparing to unpack .../247-r-cran-crayon_1.5.3-1_all.deb ... 441s Unpacking r-cran-crayon (1.5.3-1) ... 441s Selecting previously unselected package r-cran-yaml. 441s Preparing to unpack .../248-r-cran-yaml_2.3.10-1_amd64.deb ... 441s Unpacking r-cran-yaml (2.3.10-1) ... 441s Selecting previously unselected package r-cran-covr. 441s Preparing to unpack .../249-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 441s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 441s Selecting previously unselected package r-cran-cpp11. 441s Preparing to unpack .../250-r-cran-cpp11_0.5.3-1_all.deb ... 441s Unpacking r-cran-cpp11 (0.5.3-1) ... 441s Selecting previously unselected package r-cran-deldir. 441s Preparing to unpack .../251-r-cran-deldir_2.0-4-1build1_amd64.deb ... 441s Unpacking r-cran-deldir (2.0-4-1build1) ... 441s Selecting previously unselected package r-cran-desc. 441s Preparing to unpack .../252-r-cran-desc_1.4.3-1_all.deb ... 441s Unpacking r-cran-desc (1.4.3-1) ... 441s Selecting previously unselected package r-cran-diffobj. 441s Preparing to unpack .../253-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 441s Unpacking r-cran-diffobj (0.3.5-1build1) ... 441s Selecting previously unselected package r-cran-evaluate. 441s Preparing to unpack .../254-r-cran-evaluate_1.0.3-1_all.deb ... 441s Unpacking r-cran-evaluate (1.0.3-1) ... 441s Selecting previously unselected package r-cran-farver. 441s Preparing to unpack .../255-r-cran-farver_2.1.2-1_amd64.deb ... 441s Unpacking r-cran-farver (2.1.2-1) ... 441s Selecting previously unselected package r-cran-fnn. 441s Preparing to unpack .../256-r-cran-fnn_1.1.4.1-1_amd64.deb ... 441s Unpacking r-cran-fnn (1.1.4.1-1) ... 441s Selecting previously unselected package r-cran-fontawesome. 441s Preparing to unpack .../257-r-cran-fontawesome_0.5.3-1_all.deb ... 441s Unpacking r-cran-fontawesome (0.5.3-1) ... 441s Selecting previously unselected package r-cran-formula. 441s Preparing to unpack .../258-r-cran-formula_1.2-5-1_all.deb ... 441s Unpacking r-cran-formula (1.2-5-1) ... 441s Selecting previously unselected package r-cran-globals. 441s Preparing to unpack .../259-r-cran-globals_0.18.0-1_all.deb ... 441s Unpacking r-cran-globals (0.18.0-1) ... 441s Selecting previously unselected package r-cran-listenv. 441s Preparing to unpack .../260-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 441s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 441s Selecting previously unselected package r-cran-parallelly. 441s Preparing to unpack .../261-r-cran-parallelly_1.42.0-1_amd64.deb ... 441s Unpacking r-cran-parallelly (1.42.0-1) ... 441s Selecting previously unselected package r-cran-future. 441s Preparing to unpack .../262-r-cran-future_1.34.0+dfsg-1_all.deb ... 441s Unpacking r-cran-future (1.34.0+dfsg-1) ... 441s Selecting previously unselected package r-cran-future.apply. 441s Preparing to unpack .../263-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 441s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 441s Selecting previously unselected package r-cran-gtable. 441s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 441s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 441s Selecting previously unselected package r-cran-isoband. 441s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 441s Unpacking r-cran-isoband (0.2.7-1) ... 441s Selecting previously unselected package r-cran-lattice. 441s Preparing to unpack .../266-r-cran-lattice_0.22-7-1_amd64.deb ... 441s Unpacking r-cran-lattice (0.22-7-1) ... 441s Selecting previously unselected package r-cran-nlme. 441s Preparing to unpack .../267-r-cran-nlme_3.1.168-1_amd64.deb ... 441s Unpacking r-cran-nlme (3.1.168-1) ... 441s Selecting previously unselected package r-cran-matrix. 441s Preparing to unpack .../268-r-cran-matrix_1.7-4-1_amd64.deb ... 441s Unpacking r-cran-matrix (1.7-4-1) ... 441s Selecting previously unselected package r-cran-mgcv. 441s Preparing to unpack .../269-r-cran-mgcv_1.9-4-1_amd64.deb ... 441s Unpacking r-cran-mgcv (1.9-4-1) ... 442s Selecting previously unselected package r-cran-labeling. 442s Preparing to unpack .../270-r-cran-labeling_0.4.3-1_all.deb ... 442s Unpacking r-cran-labeling (0.4.3-1) ... 442s Selecting previously unselected package r-cran-rcolorbrewer. 442s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 442s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 442s Selecting previously unselected package r-cran-viridislite. 442s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 442s Unpacking r-cran-viridislite (0.4.2-2) ... 442s Selecting previously unselected package r-cran-scales. 442s Preparing to unpack .../273-r-cran-scales_1.4.0-1_all.deb ... 442s Unpacking r-cran-scales (1.4.0-1) ... 442s Selecting previously unselected package r-cran-ggplot2. 442s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 442s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 442s Selecting previously unselected package r-cran-tweenr. 442s Preparing to unpack .../275-r-cran-tweenr_2.0.3-1_amd64.deb ... 442s Unpacking r-cran-tweenr (2.0.3-1) ... 442s Selecting previously unselected package r-cran-polyclip. 442s Preparing to unpack .../276-r-cran-polyclip_1.10-7-1_amd64.deb ... 442s Unpacking r-cran-polyclip (1.10-7-1) ... 442s Selecting previously unselected package r-cran-systemfonts. 442s Preparing to unpack .../277-r-cran-systemfonts_1.2.1-1_amd64.deb ... 442s Unpacking r-cran-systemfonts (1.2.1-1) ... 442s Selecting previously unselected package r-cran-rcppeigen. 442s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 442s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 442s Selecting previously unselected package r-cran-ggforce. 442s Preparing to unpack .../279-r-cran-ggforce_0.4.2-1_amd64.deb ... 442s Unpacking r-cran-ggforce (0.4.2-1) ... 442s Selecting previously unselected package r-cran-stringi. 442s Preparing to unpack .../280-r-cran-stringi_1.8.4-1build2_amd64.deb ... 442s Unpacking r-cran-stringi (1.8.4-1build2) ... 442s Selecting previously unselected package r-cran-stringr. 442s Preparing to unpack .../281-r-cran-stringr_1.5.1-1_all.deb ... 442s Unpacking r-cran-stringr (1.5.1-1) ... 442s Selecting previously unselected package r-cran-ggthemes. 442s Preparing to unpack .../282-r-cran-ggthemes_5.2.0-1_all.deb ... 442s Unpacking r-cran-ggthemes (5.2.0-1) ... 442s Selecting previously unselected package r-cran-goftest. 442s Preparing to unpack .../283-r-cran-goftest_1.2-3-1build1_amd64.deb ... 442s Unpacking r-cran-goftest (1.2-3-1build1) ... 442s Selecting previously unselected package r-cran-gridextra. 442s Preparing to unpack .../284-r-cran-gridextra_2.3-3build2_all.deb ... 442s Unpacking r-cran-gridextra (2.3-3build2) ... 442s Selecting previously unselected package r-cran-xfun. 442s Preparing to unpack .../285-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 442s Unpacking r-cran-xfun (0.55+dfsg-1) ... 442s Selecting previously unselected package r-cran-highr. 442s Preparing to unpack .../286-r-cran-highr_0.11+dfsg-1_all.deb ... 442s Unpacking r-cran-highr (0.11+dfsg-1) ... 442s Selecting previously unselected package r-cran-later. 442s Preparing to unpack .../287-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 442s Unpacking r-cran-later (1.4.1+dfsg-1) ... 442s Selecting previously unselected package r-cran-promises. 442s Preparing to unpack .../288-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 442s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 442s Selecting previously unselected package r-cran-httpuv. 442s Preparing to unpack .../289-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 442s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 442s Selecting previously unselected package r-cran-intervals. 442s Preparing to unpack .../290-r-cran-intervals_0.15.5-1_amd64.deb ... 442s Unpacking r-cran-intervals (0.15.5-1) ... 442s Selecting previously unselected package libjs-mathjax. 442s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 442s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 443s Selecting previously unselected package r-cran-knitr. 443s Preparing to unpack .../292-r-cran-knitr_1.51+dfsg-1_all.deb ... 443s Unpacking r-cran-knitr (1.51+dfsg-1) ... 443s Selecting previously unselected package r-cran-zoo. 443s Preparing to unpack .../293-r-cran-zoo_1.8-15-1_amd64.deb ... 443s Unpacking r-cran-zoo (1.8-15-1) ... 443s Selecting previously unselected package r-cran-lmtest. 443s Preparing to unpack .../294-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 443s Unpacking r-cran-lmtest (0.9.40-1build1) ... 443s Selecting previously unselected package r-cran-lwgeom. 443s Preparing to unpack .../295-r-cran-lwgeom_0.2-14-1_amd64.deb ... 443s Unpacking r-cran-lwgeom (0.2-14-1) ... 443s Selecting previously unselected package r-cran-maps. 443s Preparing to unpack .../296-r-cran-maps_3.4.2.1-1_amd64.deb ... 443s Unpacking r-cran-maps (3.4.2.1-1) ... 443s Selecting previously unselected package r-cran-mapdata. 443s Preparing to unpack .../297-r-cran-mapdata_2.3.1-1_amd64.deb ... 443s Unpacking r-cran-mapdata (2.3.1-1) ... 443s Selecting previously unselected package r-cran-misctools. 443s Preparing to unpack .../298-r-cran-misctools_0.6-28-1_all.deb ... 443s Unpacking r-cran-misctools (0.6-28-1) ... 443s Selecting previously unselected package r-cran-sandwich. 443s Preparing to unpack .../299-r-cran-sandwich_3.1-1-1_all.deb ... 443s Unpacking r-cran-sandwich (3.1-1-1) ... 443s Selecting previously unselected package r-cran-maxlik. 443s Preparing to unpack .../300-r-cran-maxlik_1.5-2.2-1_all.deb ... 443s Unpacking r-cran-maxlik (1.5-2.2-1) ... 443s Selecting previously unselected package r-cran-rnetcdf. 443s Preparing to unpack .../301-r-cran-rnetcdf_2.9-2-1_amd64.deb ... 443s Unpacking r-cran-rnetcdf (2.9-2-1) ... 443s Selecting previously unselected package r-cran-tidyr. 443s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_amd64.deb ... 443s Unpacking r-cran-tidyr (1.3.1-1) ... 444s Selecting previously unselected package r-cran-ncmeta. 444s Preparing to unpack .../303-r-cran-ncmeta_0.4.0-1_all.deb ... 444s Unpacking r-cran-ncmeta (0.4.0-1) ... 444s Selecting previously unselected package r-cran-stars. 444s Preparing to unpack .../304-r-cran-stars_0.6-8-1_all.deb ... 444s Unpacking r-cran-stars (0.6-8-1) ... 444s Selecting previously unselected package r-cran-ncdfgeom. 444s Preparing to unpack .../305-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 444s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 444s Selecting previously unselected package r-cran-pbapply. 444s Preparing to unpack .../306-r-cran-pbapply_1.7-2-1_all.deb ... 444s Unpacking r-cran-pbapply (1.7-2-1) ... 444s Selecting previously unselected package r-cran-pcict. 444s Preparing to unpack .../307-r-cran-pcict_0.5-4.4-1_amd64.deb ... 444s Unpacking r-cran-pcict (0.5-4.4-1) ... 444s Selecting previously unselected package r-cran-pkgbuild. 444s Preparing to unpack .../308-r-cran-pkgbuild_1.4.8-1_all.deb ... 444s Unpacking r-cran-pkgbuild (1.4.8-1) ... 444s Selecting previously unselected package r-cran-rprojroot. 444s Preparing to unpack .../309-r-cran-rprojroot_2.1.1-1_all.deb ... 444s Unpacking r-cran-rprojroot (2.1.1-1) ... 444s Selecting previously unselected package r-cran-pkgload. 444s Preparing to unpack .../310-r-cran-pkgload_1.4.1-1_all.deb ... 444s Unpacking r-cran-pkgload (1.4.1-1) ... 444s Selecting previously unselected package r-cran-rbibutils. 444s Preparing to unpack .../311-r-cran-rbibutils_2.3-1_amd64.deb ... 444s Unpacking r-cran-rbibutils (2.3-1) ... 444s Selecting previously unselected package r-cran-rdpack. 444s Preparing to unpack .../312-r-cran-rdpack_2.6.3-1_all.deb ... 444s Unpacking r-cran-rdpack (2.6.3-1) ... 444s Selecting previously unselected package r-cran-plm. 444s Preparing to unpack .../313-r-cran-plm_2.6-7-1_all.deb ... 444s Unpacking r-cran-plm (2.6-7-1) ... 444s Selecting previously unselected package r-cran-praise. 444s Preparing to unpack .../314-r-cran-praise_1.0.0-4build2_all.deb ... 444s Unpacking r-cran-praise (1.0.0-4build2) ... 444s Selecting previously unselected package r-cran-randomforest. 444s Preparing to unpack .../315-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 444s Unpacking r-cran-randomforest (4.7-1.2-1) ... 444s Selecting previously unselected package r-cran-sp. 444s Preparing to unpack .../316-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 444s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 444s Selecting previously unselected package r-cran-terra. 444s Preparing to unpack .../317-r-cran-terra_1.8-70-1build2_amd64.deb ... 444s Unpacking r-cran-terra (1.8-70-1build2) ... 444s Selecting previously unselected package r-cran-raster. 444s Preparing to unpack .../318-r-cran-raster_3.6-32-1_amd64.deb ... 444s Unpacking r-cran-raster (3.6-32-1) ... 444s Selecting previously unselected package r-cran-tinytex. 444s Preparing to unpack .../319-r-cran-tinytex_0.58-1_all.deb ... 444s Unpacking r-cran-tinytex (0.58-1) ... 444s Selecting previously unselected package libjs-modernizr. 444s Preparing to unpack .../320-libjs-modernizr_3.13.0-0.1build1_all.deb ... 444s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 444s Selecting previously unselected package r-cran-xtable. 444s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 444s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 444s Selecting previously unselected package r-cran-sourcetools. 444s Preparing to unpack .../322-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 444s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 444s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 444s Preparing to unpack .../323-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 444s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 444s Selecting previously unselected package r-cran-shiny. 444s Preparing to unpack .../324-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 444s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 444s Selecting previously unselected package r-cran-rmarkdown. 444s Preparing to unpack .../325-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 444s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 445s Selecting previously unselected package r-cran-survival. 445s Preparing to unpack .../326-r-cran-survival_3.8-3-1_amd64.deb ... 445s Unpacking r-cran-survival (3.8-3-1) ... 445s Selecting previously unselected package r-cran-rpart. 445s Preparing to unpack .../327-r-cran-rpart_4.1.24-1_amd64.deb ... 445s Unpacking r-cran-rpart (4.1.24-1) ... 445s Selecting previously unselected package r-cran-xts. 445s Preparing to unpack .../328-r-cran-xts_0.14.1-1_amd64.deb ... 445s Unpacking r-cran-xts (0.14.1-1) ... 445s Selecting previously unselected package r-cran-spacetime. 445s Preparing to unpack .../329-r-cran-spacetime_1.3-3-2_all.deb ... 445s Unpacking r-cran-spacetime (1.3-3-2) ... 445s Selecting previously unselected package r-cran-spatstat.utils. 445s Preparing to unpack .../330-r-cran-spatstat.utils_3.1-3-1_amd64.deb ... 445s Unpacking r-cran-spatstat.utils (3.1-3-1) ... 445s Selecting previously unselected package r-cran-spatstat.data. 445s Preparing to unpack .../331-r-cran-spatstat.data_3.1-6-1_all.deb ... 445s Unpacking r-cran-spatstat.data (3.1-6-1) ... 445s Selecting previously unselected package r-cran-spatstat.univar. 445s Preparing to unpack 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(3.2.3-1) ... 449s Setting up r-cran-classint (0.4-11+dfsg-1) ... 449s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 449s Setting up r-cran-spatstat.explore (3.3-4-1) ... 449s Setting up r-cran-ggthemes (5.2.0-1) ... 449s Setting up r-cran-tidyr (1.3.1-1) ... 449s Setting up r-cran-ggforce (0.4.2-1) ... 449s Setting up r-cran-spatstat.model (3.3-4-1) ... 449s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 449s Setting up r-cran-ncmeta (0.4.0-1) ... 449s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 449s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 449s Setting up r-cran-spatstat (3.3-1-1) ... 449s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 449s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 449s Setting up libheif1:amd64 (1.21.2-1) ... 449s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ... 449s Setting up r-cran-terra (1.8-70-1build2) ... 449s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 449s Setting up r-cran-stars (0.6-8-1) ... 449s Setting up r-cran-areal (0.1.8+dfsg-2) ... 449s Setting up r-cran-raster (3.6-32-1) ... 449s Setting up r-cran-lwgeom (0.2-14-1) ... 449s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 449s Processing triggers for libc-bin (2.42-2ubuntu4) ... 449s Processing triggers for man-db (2.13.1-1) ... 451s Processing triggers for install-info (7.2-5) ... 453s autopkgtest [19:32:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 453s autopkgtest [19:32:08]: test pkg-r-autopkgtest: [----------------------- 453s Test: Try to load the R library stars 453s 453s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 453s Copyright (C) 2025 The R Foundation for Statistical Computing 453s Platform: x86_64-pc-linux-gnu 453s 453s R is free software and comes with ABSOLUTELY NO WARRANTY. 453s You are welcome to redistribute it under certain conditions. 453s Type 'license()' or 'licence()' for distribution details. 453s 453s R is a collaborative project with many contributors. 453s Type 'contributors()' for more information and 453s 'citation()' on how to cite R or R packages in publications. 453s 453s Type 'demo()' for some demos, 'help()' for on-line help, or 453s 'help.start()' for an HTML browser interface to help. 453s Type 'q()' to quit R. 453s 453s > library('stars') 453s Loading required package: abind 453s Loading required package: sf 454s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 454s > 454s autopkgtest [19:32:09]: test pkg-r-autopkgtest: -----------------------] 455s pkg-r-autopkgtest PASS 455s autopkgtest [19:32:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 455s autopkgtest [19:32:10]: @@@@@@@@@@@@@@@@@@@@ summary 455s run-unit-test PASS 455s pkg-r-autopkgtest PASS