0s autopkgtest [03:41:12]: starting date and time: 2026-02-10 03:41:12+0000
  0s autopkgtest [03:41:12]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [03:41:12]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.w4ckhhdl/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-sp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-14.secgroup --name adt-resolute-amd64-r-cran-sp-20260210-034111-juju-7f2275-prod-proposed-migration-environment-15-a7a4386b-d5c2-41ca-a003-d181bfd81d24 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-cran-sp-20260210-034111-juju-7f2275-prod-proposed-migration-environment-15-a7a4386b-d5c2-41ca-a003-d181bfd81d24 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
142s autopkgtest [03:43:34]: testbed dpkg architecture: amd64
142s autopkgtest [03:43:34]: testbed apt version: 3.1.14
142s autopkgtest [03:43:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup
142s autopkgtest [03:43:34]: testbed release detected to be: None
143s autopkgtest [03:43:35]: updating testbed package index (apt update)
143s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
143s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
143s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
143s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
143s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
143s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
144s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
144s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
144s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
144s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
144s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
144s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
144s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
144s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
144s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
144s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
144s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
145s Fetched 5189 kB in 1s (4618 kB/s)
145s Reading package lists...
146s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
146s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
146s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
146s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
147s Reading package lists...
147s Reading package lists...
147s Building dependency tree...
147s Reading state information...
147s Calculating upgrade...
147s The following package was automatically installed and is no longer required:
147s   libpython3.13
147s Use 'sudo apt autoremove' to remove it.
147s The following NEW packages will be installed:
147s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
147s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
147s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
147s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
147s The following packages will be upgraded:
147s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
147s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
147s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
147s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
147s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
147s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
147s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
147s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
147s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
147s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
147s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
147s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
147s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
147s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
147s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
147s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
147s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
147s Need to get 237 MB of archives.
147s After this operation, 339 MB of additional disk space will be used.
147s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
147s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
147s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
147s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
147s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
147s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
147s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
147s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
147s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
147s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
147s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
148s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
148s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
148s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
148s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
148s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
148s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
148s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
148s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
148s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
148s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
148s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
148s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
148s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
148s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
148s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
148s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
148s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
148s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
148s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
148s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
148s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
148s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
148s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
148s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
148s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
148s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
148s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
148s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
148s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
148s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
148s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
148s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
148s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
148s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
148s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
148s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
148s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
148s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
148s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
148s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
148s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
148s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
148s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
148s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
148s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
148s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
148s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
148s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
148s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
148s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
148s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
148s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
148s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
148s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
148s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
148s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
148s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
148s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
148s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
148s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
148s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
148s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
148s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
148s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
148s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
148s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
148s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
148s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
148s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
148s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
148s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
151s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
151s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
151s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
151s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
151s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
151s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
151s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
151s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
151s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
151s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
151s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
151s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
151s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
151s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
151s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
151s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
151s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
151s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
152s dpkg-preconfigure: unable to re-open stdin: No such file or directory
152s Fetched 237 MB in 4s (59.1 MB/s)
152s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
152s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
152s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
152s Setting up debianutils (5.23.2build1) ...
152s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
152s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
152s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
152s Setting up dash (0.5.12-12ubuntu3) ...
152s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
152s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
152s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
152s Setting up findutils (4.10.0-3build2) ...
152s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
152s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
152s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
152s Setting up sed (4.9-2build3) ...
152s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
152s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
152s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
152s Setting up tar (1.35+dfsg-3.1build2) ...
152s (Reading database ... 
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162s Setting up libglib2.0-data (2.87.2-2) ...
162s Setting up pollinate (4.33-4ubuntu5) ...
172s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
172s Setting up libwrap0:amd64 (7.6.q-36build2) ...
172s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
174s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
174s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
174s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
174s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
174s Setting up patch (2.8-2build1) ...
174s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
174s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
174s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
174s Setting up lsof (4.99.4+dfsg-2build2) ...
174s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
174s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
174s Setting up dracut-install (109-11ubuntu1) ...
174s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
174s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
174s Setting up pnp.ids (0.394-1build1) ...
174s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
174s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
174s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
174s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
174s Setting up mawk (1.3.4.20260129-1) ...
174s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
174s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
174s Setting up linux-image-virtual (6.19.0-3.3) ...
174s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
174s Setting up libbsd0:amd64 (0.12.2-2build2) ...
174s Setting up libdrm-common (2.4.131-1) ...
174s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
174s Setting up dbus-bin (1.16.2-2ubuntu3) ...
174s Setting up libonig5:amd64 (6.9.10-1build1) ...
174s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
174s Setting up ethtool (1:6.15-3build1) ...
174s Setting up python3-referencing (0.36.2-1ubuntu2) ...
174s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
174s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
174s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
174s Setting up tcpdump (4.99.5-2ubuntu3) ...
174s Setting up linux-image-generic (6.19.0-3.3) ...
174s Setting up wget (1.25.0-2ubuntu4) ...
174s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
174s Setting up iptables (1.8.11-2ubuntu3) ...
174s Setting up iproute2 (6.18.0-1ubuntu1) ...
174s Setting up linux-headers-generic (6.19.0-3.3) ...
174s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
174s Setting up hwdata (0.394-1build1) ...
174s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
174s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
174s No schema files found: doing nothing.
174s Setting up dbus (1.16.2-2ubuntu3) ...
174s A reboot is required to replace the running dbus-daemon.
174s Please reboot the system when convenient.
176s Setting up shared-mime-info (2.4-5build3) ...
176s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
176s Setting up pciutils (1:3.14.0-1build2) ...
176s Setting up python3-markdown-it (3.0.0-3build1) ...
176s Setting up libdrm2:amd64 (2.4.131-1) ...
176s Setting up libpython3.14:amd64 (3.14.2-1) ...
176s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
176s Setting up linux-tools-common (6.19.0-3.3) ...
176s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
176s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
176s Setting up apt (3.1.15) ...
176s Setting up linux-headers-virtual (6.19.0-3.3) ...
176s Setting up linux-generic (6.19.0-3.3) ...
176s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
176s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
176s Setting up ubuntu-standard (1.564) ...
176s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
176s Setting up linux-virtual (6.19.0-3.3) ...
176s Setting up linux-perf (6.19.0-3.3) ...
176s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
176s Processing triggers for debianutils (5.23.2build1) ...
176s Processing triggers for install-info (7.2-5) ...
176s Processing triggers for initramfs-tools (0.150ubuntu7) ...
176s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
181s Processing triggers for libc-bin (2.42-2ubuntu4) ...
181s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
181s /etc/kernel/postinst.d/initramfs-tools:
181s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
185s /etc/kernel/postinst.d/zz-update-grub:
185s Sourcing file `/etc/default/grub'
185s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
185s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
185s Generating grub configuration file ...
185s Found linux image: /boot/vmlinuz-6.19.0-3-generic
185s Found initrd image: /boot/initrd.img-6.19.0-3-generic
185s Found linux image: /boot/vmlinuz-6.18.0-9-generic
185s Found initrd image: /boot/initrd.img-6.18.0-9-generic
185s Warning: os-prober will not be executed to detect other bootable partitions.
185s Systems on them will not be added to the GRUB boot configuration.
185s Check GRUB_DISABLE_OS_PROBER documentation entry.
185s Adding boot menu entry for UEFI Firmware Settings ...
185s done
185s autopkgtest [03:44:17]: upgrading testbed (apt dist-upgrade and autopurge)
186s Reading package lists...
186s Building dependency tree...
186s Reading state information...
186s Calculating upgrade...
186s The following package was automatically installed and is no longer required:
186s   libpython3.13
186s Use 'sudo apt autoremove' to remove it.
187s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
187s Solving dependencies...
187s The following packages will be REMOVED:
187s   libpython3.13*
187s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
187s After this operation, 7599 kB disk space will be freed.
187s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
187s Removing libpython3.13:amd64 (3.13.11-1) ...
187s Processing triggers for libc-bin (2.42-2ubuntu4) ...
187s autopkgtest [03:44:19]: rebooting testbed after setup commands that affected boot
216s autopkgtest [03:44:48]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
218s autopkgtest [03:44:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sp
219s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sp 1:2.2-0+dfsg-1 (dsc) [2213 B]
219s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sp 1:2.2-0+dfsg-1 (tar) [513 kB]
219s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sp 1:2.2-0+dfsg-1 (diff) [5020 B]
219s gpgv: Signature made Tue Feb 25 05:59:06 2025 UTC
219s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
219s gpgv:                issuer "plessy@debian.org"
219s gpgv: Can't check signature: No public key
219s dpkg-source: warning: cannot verify inline signature for ./r-cran-sp_2.2-0+dfsg-1.dsc: no acceptable signature found
219s autopkgtest [03:44:51]: testing package r-cran-sp version 1:2.2-0+dfsg-1
220s autopkgtest [03:44:52]: build not needed
223s autopkgtest [03:44:55]: test run-unit-test: preparing testbed
223s Reading package lists...
223s Building dependency tree...
223s Reading state information...
223s Solving dependencies...
224s The following NEW packages will be installed:
224s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
224s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data
224s   gdal-plugins javascript-common libabsl20260107 libaec0 libaom3
224s   libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2
224s   libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1
224s   libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1
224s   libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3
224s   libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec
224s   libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8
224s   libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
224s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
224s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
224s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
224s   libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64
224s   libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7
224s   liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22
224s   libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
224s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147
224s   libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5
224s   libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0
224s   libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7
224s   libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1
224s   libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv
224s   node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind
224s   r-cran-base64enc r-cran-bslib r-cran-cachem r-cran-class r-cran-classint
224s   r-cran-cli r-cran-commonmark r-cran-crayon r-cran-dbi r-cran-deldir
224s   r-cran-digest r-cran-e1071 r-cran-evaluate r-cran-fastmap r-cran-fnn
224s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-gstat r-cran-highr
224s   r-cran-htmltools r-cran-httpuv r-cran-intervals r-cran-jquerylib
224s   r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-later r-cran-lattice
224s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-maps r-cran-mass
224s   r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-proxy
224s   r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp
224s   r-cran-rlang r-cran-rmarkdown r-cran-s2 r-cran-sass r-cran-sf r-cran-sftime
224s   r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-stars
224s   r-cran-terra r-cran-tinytex r-cran-units r-cran-withr r-cran-wk r-cran-xfun
224s   r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common unzip
224s   x11-common xdg-utils zip
224s 0 upgraded, 195 newly installed, 0 to remove and 0 not upgraded.
224s Need to get 178 MB of archives.
224s After this operation, 593 MB of additional disk space will be used.
224s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
224s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
224s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
224s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
224s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
224s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
224s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
224s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
224s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB]
224s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB]
224s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
224s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB]
224s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB]
224s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB]
224s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
224s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
224s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
224s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB]
224s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB]
224s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB]
224s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB]
224s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB]
224s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
224s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
224s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB]
224s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB]
224s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB]
224s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB]
224s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
224s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
224s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
224s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
224s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
224s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB]
224s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
224s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB]
224s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
224s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB]
224s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB]
224s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB]
225s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB]
225s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB]
225s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB]
225s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
225s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
225s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
225s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
225s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
225s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB]
225s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB]
225s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB]
225s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB]
225s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB]
225s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB]
225s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB]
225s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B]
225s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB]
225s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB]
225s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB]
225s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB]
225s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB]
225s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB]
225s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB]
225s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB]
225s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
225s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB]
225s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B]
225s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB]
225s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB]
225s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB]
225s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB]
225s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB]
225s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B]
225s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB]
225s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB]
225s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB]
225s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB]
225s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB]
225s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB]
225s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4build1 [189 kB]
225s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB]
225s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB]
225s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB]
226s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
226s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
226s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
226s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
226s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
226s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
226s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
226s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
226s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
226s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
226s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
226s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
226s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
226s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
226s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
226s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
226s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
226s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
226s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
226s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
226s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
226s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
226s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
226s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
226s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
226s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
226s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
226s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
226s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
226s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
226s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
226s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB]
226s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB]
226s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
226s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
226s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
226s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
226s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
226s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
227s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
227s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
227s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
227s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
228s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
228s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
228s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
228s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
228s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
228s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
228s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
228s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
228s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
229s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
229s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
229s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
229s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
229s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
229s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
229s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
229s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
229s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
229s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
229s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB]
229s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB]
229s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB]
229s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
229s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB]
229s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
229s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
229s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
229s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
229s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
229s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB]
229s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
229s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
229s Get:159 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB]
229s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
229s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB]
229s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
229s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
229s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
229s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
229s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB]
230s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB]
230s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB]
230s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB]
230s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB]
230s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB]
230s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB]
230s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB]
230s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.7-0-1 [4415 kB]
230s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB]
230s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
230s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
230s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
230s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
230s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
230s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
230s Get:182 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
231s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
231s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB]
231s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB]
231s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB]
231s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
231s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
231s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
231s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
231s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
231s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
231s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
231s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
231s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
232s Preconfiguring packages ...
232s Fetched 178 MB in 8s (22.3 MB/s)
232s Selecting previously unselected package fonts-dejavu-mono.
232s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 90%
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(Reading database ... 125269 files and directories currently installed.)
232s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ...
232s Unpacking fonts-dejavu-mono (2.37-8build1) ...
232s Selecting previously unselected package fonts-dejavu-core.
232s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ...
232s Unpacking fonts-dejavu-core (2.37-8build1) ...
232s Selecting previously unselected package fontconfig-config.
232s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
232s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
232s Selecting previously unselected package libfontconfig1:amd64.
232s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
232s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
232s Selecting previously unselected package fontconfig.
232s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
232s Unpacking fontconfig (2.17.1-3ubuntu1) ...
232s Selecting previously unselected package fonts-font-awesome.
232s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
232s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
232s Selecting previously unselected package fonts-glyphicons-halflings.
232s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
232s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
232s Selecting previously unselected package fonts-mathjax.
232s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
232s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
232s Selecting previously unselected package gdal-data.
232s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ...
232s Unpacking gdal-data (3.12.1+dfsg-1) ...
232s Selecting previously unselected package gdal-plugins:amd64.
232s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ...
232s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ...
232s Selecting previously unselected package javascript-common.
232s Preparing to unpack .../010-javascript-common_12+nmu1build1_all.deb ...
232s Unpacking javascript-common (12+nmu1build1) ...
232s Selecting previously unselected package libabsl20260107:amd64.
232s Preparing to unpack .../011-libabsl20260107_20260107.0-1_amd64.deb ...
232s Unpacking libabsl20260107:amd64 (20260107.0-1) ...
232s Selecting previously unselected package libaec0:amd64.
232s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ...
232s Unpacking libaec0:amd64 (1.1.5-1) ...
232s Selecting previously unselected package libaom3:amd64.
233s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ...
233s Unpacking libaom3:amd64 (3.13.1-2) ...
233s Selecting previously unselected package libblas3:amd64.
233s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ...
233s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
233s Selecting previously unselected package libgfortran5:amd64.
233s Preparing to unpack .../015-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
233s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
233s Selecting previously unselected package liblapack3:amd64.
233s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ...
233s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ...
233s Selecting previously unselected package libarpack2t64:amd64.
233s Preparing to unpack .../017-libarpack2t64_3.9.1-6_amd64.deb ...
233s Unpacking libarpack2t64:amd64 (3.9.1-6) ...
233s Selecting previously unselected package libsuperlu7:amd64.
233s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ...
233s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ...
233s Selecting previously unselected package libarmadillo15.
233s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ...
233s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ...
233s Selecting previously unselected package libdav1d7:amd64.
233s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ...
233s Unpacking libdav1d7:amd64 (1.5.3-1) ...
233s Selecting previously unselected package libgav1-2:amd64.
233s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ...
233s Unpacking libgav1-2:amd64 (0.20.0-2build1) ...
233s Selecting previously unselected package libjpeg-turbo8:amd64.
233s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
233s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
233s Selecting previously unselected package libjpeg8:amd64.
233s Preparing to unpack .../023-libjpeg8_8c-2ubuntu12_amd64.deb ...
233s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ...
233s Selecting previously unselected package libyuv0:amd64.
233s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ...
233s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ...
233s Selecting previously unselected package libavif16:amd64.
233s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ...
233s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ...
233s Selecting previously unselected package libsnappy1v5:amd64.
233s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ...
233s Unpacking libsnappy1v5:amd64 (1.2.2-2) ...
233s Selecting previously unselected package libblosc1:amd64.
233s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ...
233s Unpacking libblosc1:amd64 (1.21.5+ds-2) ...
233s Selecting previously unselected package libpixman-1-0:amd64.
233s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ...
233s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
233s Selecting previously unselected package libxcb-render0:amd64.
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240s Setting up libkmlengine1t64:amd64 (1.3.0-13) ...
240s Setting up libcairo2:amd64 (1.18.4-3) ...
240s Setting up libgeotiff5:amd64 (1.7.4-1build1) ...
240s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
240s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
240s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
240s Setting up libspatialite8t64:amd64 (5.1.0-3ubuntu1) ...
240s Setting up r-base-core (4.5.2-1ubuntu2) ...
240s Creating config file /etc/R/Renviron with new version
240s Setting up r-cran-crayon (1.5.3-1) ...
240s Setting up r-cran-sourcetools (0.1.7-1-1) ...
240s Setting up r-cran-lattice (0.22-9-1) ...
240s Setting up r-cran-intervals (0.15.5-1) ...
240s Setting up r-cran-wk (0.9.4-1) ...
240s Setting up r-cran-commonmark (1.9.5-1) ...
240s Setting up r-cran-proxy (0.4-27-1) ...
240s Setting up r-cran-r6 (2.6.1-1) ...
240s Setting up r-cran-pkgkitten (0.2.4-1) ...
240s Setting up r-cran-magrittr (2.0.3-1) ...
240s Setting up r-cran-rappdirs (0.3.3-1build1) ...
240s Setting up r-cran-littler (0.3.22-1) ...
240s Setting up r-cran-fs (1.6.5+dfsg-1) ...
240s Setting up r-cran-rcpp (1.1.0-1) ...
240s Setting up r-cran-maps (3.4.2.1-1) ...
240s Setting up r-cran-rlang (1.1.5-3) ...
240s Setting up r-cran-xfun (0.55+dfsg-1) ...
240s Setting up r-cran-withr (3.0.2+dfsg-1) ...
240s Setting up r-cran-mime (0.12-2) ...
240s Setting up r-cran-base64enc (0.1-3-3build1) ...
240s Setting up r-cran-abind (1.4-8-1build1) ...
240s Setting up r-cran-s2 (1.1.9-1build1) ...
240s Setting up r-cran-digest (0.6.39-1) ...
240s Setting up r-cran-yaml (2.3.10-1) ...
240s Setting up r-cran-evaluate (1.0.5-1) ...
240s Setting up r-cran-dbi (1.2.3-1build1) ...
240s Setting up r-cran-highr (0.11+dfsg-1) ...
240s Setting up r-cran-mass (7.3-65-1) ...
240s Setting up r-cran-glue (1.8.0-1) ...
240s Setting up r-cran-xtable (1:1.8-4-2build1) ...
240s Setting up r-cran-cli (3.6.4-1) ...
240s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
240s Setting up r-cran-fnn (1.1.4.1-1) ...
240s Setting up r-cran-deldir (2.0-4-1build1) ...
240s Setting up r-cran-fastmap (1.2.0-1) ...
240s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
240s Setting up r-cran-sp (1:2.2-0+dfsg-1) ...
240s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
240s Setting up r-cran-zoo (1.8-15-1) ...
240s Setting up r-cran-units (0.8-7+dfsg-2) ...
240s Setting up r-cran-later (1.4.1+dfsg-1) ...
240s Setting up r-cran-htmltools (0.5.8.1-1) ...
240s Setting up r-cran-tinytex (0.58-1) ...
240s Setting up r-cran-kernsmooth (2.23-26-1build1) ...
240s Setting up r-cran-knitr (1.51+dfsg-1) ...
240s Setting up r-cran-cachem (1.1.0-1) ...
240s Setting up r-cran-sass (0.4.9+dfsg-1) ...
240s Setting up r-cran-class (7.3-23-1) ...
240s Setting up r-cran-fontawesome (0.5.3-1) ...
240s Setting up r-cran-xts (0.14.1-1) ...
240s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
240s Setting up r-cran-memoise (2.0.1-1build1) ...
240s Setting up r-cran-promises (1.3.2+dfsg-1) ...
240s Setting up r-cran-e1071 (1.7-17-1) ...
240s Setting up r-cran-spacetime (1.3-3-2) ...
240s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
240s Setting up r-cran-classint (0.4-11+dfsg-1) ...
240s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
240s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
240s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
240s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ...
240s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ...
240s Setting up libheif1:amd64 (1.21.2-1) ...
240s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ...
240s Setting up r-cran-terra (1.8-70-1build2) ...
240s Setting up r-cran-sf (1.0-19+dfsg-2build2) ...
240s Setting up r-cran-stars (0.7-0-1) ...
240s Setting up r-cran-sftime (0.2-0-6) ...
240s Setting up r-cran-gstat (2.1-3-2) ...
240s Setting up r-cran-raster (3.6-31-2) ...
240s Processing triggers for install-info (7.2-5) ...
240s Processing triggers for libc-bin (2.42-2ubuntu4) ...
240s Processing triggers for man-db (2.13.1-1build1) ...
241s autopkgtest [03:45:13]: test run-unit-test: [-----------------------
242s BEGIN TEST base.R
242s 
242s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
242s Copyright (C) 2025 The R Foundation for Statistical Computing
242s Platform: x86_64-pc-linux-gnu
242s 
242s R is free software and comes with ABSOLUTELY NO WARRANTY.
242s You are welcome to redistribute it under certain conditions.
242s Type 'license()' or 'licence()' for distribution details.
242s 
242s R is a collaborative project with many contributors.
242s Type 'contributors()' for more information and
242s 'citation()' on how to cite R or R packages in publications.
242s 
242s Type 'demo()' for some demos, 'help()' for on-line help, or
242s 'help.start()' for an HTML browser interface to help.
242s Type 'q()' to quit R.
242s 
242s > options("rgdal_show_exportToProj4_warnings"="none")
242s > library(sp)
242s > data(meuse)
242s > x = meuse[1:10, ] # limit the output
242s > coordinates(x) = c("x", "y") # names
242s > bbox(x)
242s      min    max
242s x 181025 181390
242s y 333168 333611
242s > is.projected(x)
242s [1] NA
242s > dimensions(x)
242s [1] 2
242s > x
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s    lime landuse dist.m
242s 1     1      Ah     50
242s 2     1      Ah     30
242s 3     1      Ah    150
242s 4     0      Ga    270
242s 5     0      Ah    380
242s 6     0      Ga    470
242s 7     0      Ah    240
242s 8     0      Ab    120
242s 9     0      Ab    240
242s 10    0       W    420
242s > 
242s > x = meuse[1:10, ]
242s > coordinates(x) = c(1, 2) # coordinate column numbers
242s > x
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s    lime landuse dist.m
242s 1     1      Ah     50
242s 2     1      Ah     30
242s 3     1      Ah    150
242s 4     0      Ga    270
242s 5     0      Ah    380
242s 6     0      Ga    470
242s 7     0      Ah    240
242s 8     0      Ab    120
242s 9     0      Ab    240
242s 10    0       W    420
242s > 
242s > x = meuse[1:10, ]
242s > coordinates(x) = ~x+y # coordinates formula
242s > x
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s    lime landuse dist.m
242s 1     1      Ah     50
242s 2     1      Ah     30
242s 3     1      Ah    150
242s 4     0      Ga    270
242s 5     0      Ah    380
242s 6     0      Ga    470
242s 7     0      Ah    240
242s 8     0      Ab    120
242s 9     0      Ab    240
242s 10    0       W    420
242s > 
242s > x = meuse[1:10, ]
242s > coordinates(x) = meuse[1:10, c("x", "y")] # coords, as data.frame
242s > x
242s         coordinates      x      y cadmium copper lead zinc  elev       dist
242s 1  (181072, 333611) 181072 333611    11.7     85  299 1022 7.909 0.00135803
242s 2  (181025, 333558) 181025 333558     8.6     81  277 1141 6.983 0.01222430
242s 3  (181165, 333537) 181165 333537     6.5     68  199  640 7.800 0.10302900
242s 4  (181298, 333484) 181298 333484     2.6     81  116  257 7.655 0.19009400
242s 5  (181307, 333330) 181307 333330     2.8     48  117  269 7.480 0.27709000
242s 6  (181390, 333260) 181390 333260     3.0     61  137  281 7.791 0.36406700
242s 7  (181165, 333370) 181165 333370     3.2     31  132  346 8.217 0.19009400
242s 8  (181027, 333363) 181027 333363     2.8     29  150  406 8.490 0.09215160
242s 9  (181060, 333231) 181060 333231     2.4     37  133  347 8.668 0.18461400
242s 10 (181232, 333168) 181232 333168     1.6     24   80  183 9.049 0.30970200
242s      om ffreq soil lime landuse dist.m
242s 1  13.6     1    1    1      Ah     50
242s 2  14.0     1    1    1      Ah     30
242s 3  13.0     1    1    1      Ah    150
242s 4   8.0     1    2    0      Ga    270
242s 5   8.7     1    2    0      Ah    380
242s 6   7.8     1    2    0      Ga    470
242s 7   9.2     1    2    0      Ah    240
242s 8   9.5     1    1    0      Ab    120
242s 9  10.6     1    1    0      Ab    240
242s 10  6.3     1    2    0       W    420
242s > 
242s > x = meuse[1:10, ]
242s > coordinates(x) = as.matrix(meuse[1:10, c("x", "y")]) # coords, as matrix
242s > x
242s         coordinates      x      y cadmium copper lead zinc  elev       dist
242s 1  (181072, 333611) 181072 333611    11.7     85  299 1022 7.909 0.00135803
242s 2  (181025, 333558) 181025 333558     8.6     81  277 1141 6.983 0.01222430
242s 3  (181165, 333537) 181165 333537     6.5     68  199  640 7.800 0.10302900
242s 4  (181298, 333484) 181298 333484     2.6     81  116  257 7.655 0.19009400
242s 5  (181307, 333330) 181307 333330     2.8     48  117  269 7.480 0.27709000
242s 6  (181390, 333260) 181390 333260     3.0     61  137  281 7.791 0.36406700
242s 7  (181165, 333370) 181165 333370     3.2     31  132  346 8.217 0.19009400
242s 8  (181027, 333363) 181027 333363     2.8     29  150  406 8.490 0.09215160
242s 9  (181060, 333231) 181060 333231     2.4     37  133  347 8.668 0.18461400
242s 10 (181232, 333168) 181232 333168     1.6     24   80  183 9.049 0.30970200
242s      om ffreq soil lime landuse dist.m
242s 1  13.6     1    1    1      Ah     50
242s 2  14.0     1    1    1      Ah     30
242s 3  13.0     1    1    1      Ah    150
242s 4   8.0     1    2    0      Ga    270
242s 5   8.7     1    2    0      Ah    380
242s 6   7.8     1    2    0      Ga    470
242s 7   9.2     1    2    0      Ah    240
242s 8   9.5     1    1    0      Ab    120
242s 9  10.6     1    1    0      Ab    240
242s 10  6.3     1    2    0       W    420
242s > 
242s > x = meuse[1:20,]
242s > coordinates(x) = c("x", "y") # coordinate column names
242s > print(summary(x))
242s Object of class SpatialPointsDataFrame
242s Coordinates:
242s      min    max
242s x 180555 181390
242s y 332707 333611
242s Is projected: NA 
242s proj4string : [NA]
242s Number of points: 20
242s Data attributes:
242s     cadmium           copper           lead            zinc       
242s  Min.   : 1.400   Min.   :24.00   Min.   : 80.0   Min.   : 183.0  
242s  1st Qu.: 2.475   1st Qu.:30.50   1st Qu.:126.8   1st Qu.: 278.0  
242s  Median : 3.100   Median :64.50   Median :142.5   Median : 455.0  
242s  Mean   : 5.465   Mean   :56.95   Mean   :171.7   Mean   : 569.7  
242s  3rd Qu.: 8.625   3rd Qu.:81.00   3rd Qu.:215.2   3rd Qu.: 806.8  
242s  Max.   :12.900   Max.   :95.00   Max.   :299.0   Max.   :1141.0  
242s                                                                   
242s       elev            dist                om         ffreq  soil   lime  
242s  Min.   :6.860   Min.   :0.000000   Min.   : 6.300   1:20   1:14   0:11  
242s  1st Qu.:7.280   1st Qu.:0.009508   1st Qu.: 8.625   2: 0   2: 6   1: 9  
242s  Median :7.795   Median :0.108480   Median :10.050   3: 0   3: 0         
242s  Mean   :7.952   Mean   :0.128719   Mean   :11.285                       
242s  3rd Qu.:8.705   3rd Qu.:0.199601   3rd Qu.:14.200                       
242s  Max.   :9.073   Max.   :0.364067   Max.   :16.200                       
242s                                                                          
242s     landuse      dist.m     
242s  Ah     :7   Min.   : 10.0  
242s  W      :6   1st Qu.: 17.5  
242s  Ab     :2   Median :140.0  
242s  Ga     :2   Mean   :174.5  
242s  Ag     :1   3rd Qu.:277.5  
242s  (Other):1   Max.   :470.0  
242s  NA's   :1                  
242s > 
242s > x[1:10] # first 10 columns
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s 11 (181191, 333115)     1.4     25   86  189 9.015 0.31511600  6.4     1    2
242s 12 (181032, 333031)     1.8     25   97  251 9.073 0.22812300  9.0     1    1
242s 13 (180874, 333339)    11.2     93  285 1096 7.320 0.00000000 15.4     1    1
242s 14 (180969, 333252)     2.5     31  183  504 8.815 0.11393200  8.4     1    1
242s 15 (181011, 333161)     2.0     27  130  326 8.937 0.16833600  9.1     1    1
242s 16 (180830, 333246)     9.5     86  240 1032 7.702 0.00000000 16.2     1    1
242s 17 (180763, 333104)     7.0     74  133  606 7.160 0.01222430 16.0     1    1
242s 18 (180694, 332972)     7.1     69  148  711 7.100 0.01222430 16.0     1    1
242s 19 (180625, 332847)     8.7     69  207  735 7.020 0.00000000 13.7     1    1
242s 20 (180555, 332707)    12.9     95  284 1052 6.860 0.00000000 14.8     1    1
242s    lime
242s 1     1
242s 2     1
242s 3     1
242s 4     0
242s 5     0
242s 6     0
242s 7     0
242s 8     0
242s 9     0
242s 10    0
242s 11    0
242s 12    0
242s 13    1
242s 14    0
242s 15    0
242s 16    1
242s 17    1
242s 18    1
242s 19    1
242s 20    1
242s > x[, 1:10] # first 10 columns
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s 11 (181191, 333115)     1.4     25   86  189 9.015 0.31511600  6.4     1    2
242s 12 (181032, 333031)     1.8     25   97  251 9.073 0.22812300  9.0     1    1
242s 13 (180874, 333339)    11.2     93  285 1096 7.320 0.00000000 15.4     1    1
242s 14 (180969, 333252)     2.5     31  183  504 8.815 0.11393200  8.4     1    1
242s 15 (181011, 333161)     2.0     27  130  326 8.937 0.16833600  9.1     1    1
242s 16 (180830, 333246)     9.5     86  240 1032 7.702 0.00000000 16.2     1    1
242s 17 (180763, 333104)     7.0     74  133  606 7.160 0.01222430 16.0     1    1
242s 18 (180694, 332972)     7.1     69  148  711 7.100 0.01222430 16.0     1    1
242s 19 (180625, 332847)     8.7     69  207  735 7.020 0.00000000 13.7     1    1
242s 20 (180555, 332707)    12.9     95  284 1052 6.860 0.00000000 14.8     1    1
242s    lime
242s 1     1
242s 2     1
242s 3     1
242s 4     0
242s 5     0
242s 6     0
242s 7     0
242s 8     0
242s 9     0
242s 10    0
242s 11    0
242s 12    0
242s 13    1
242s 14    0
242s 15    0
242s 16    1
242s 17    1
242s 18    1
242s 19    1
242s 20    1
242s > x[1:10,] # rows 1-10
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s    lime landuse dist.m
242s 1     1      Ah     50
242s 2     1      Ah     30
242s 3     1      Ah    150
242s 4     0      Ga    270
242s 5     0      Ah    380
242s 6     0      Ga    470
242s 7     0      Ah    240
242s 8     0      Ab    120
242s 9     0      Ab    240
242s 10    0       W    420
242s > x["zinc"] # column zinc + coords
242s         coordinates zinc
242s 1  (181072, 333611) 1022
242s 2  (181025, 333558) 1141
242s 3  (181165, 333537)  640
242s 4  (181298, 333484)  257
242s 5  (181307, 333330)  269
242s 6  (181390, 333260)  281
242s 7  (181165, 333370)  346
242s 8  (181027, 333363)  406
242s 9  (181060, 333231)  347
242s 10 (181232, 333168)  183
242s 11 (181191, 333115)  189
242s 12 (181032, 333031)  251
242s 13 (180874, 333339) 1096
242s 14 (180969, 333252)  504
242s 15 (181011, 333161)  326
242s 16 (180830, 333246) 1032
242s 17 (180763, 333104)  606
242s 18 (180694, 332972)  711
242s 19 (180625, 332847)  735
242s 20 (180555, 332707) 1052
242s > x[, "zinc"] # idem
242s         coordinates zinc
242s 1  (181072, 333611) 1022
242s 2  (181025, 333558) 1141
242s 3  (181165, 333537)  640
242s 4  (181298, 333484)  257
242s 5  (181307, 333330)  269
242s 6  (181390, 333260)  281
242s 7  (181165, 333370)  346
242s 8  (181027, 333363)  406
242s 9  (181060, 333231)  347
242s 10 (181232, 333168)  183
242s 11 (181191, 333115)  189
242s 12 (181032, 333031)  251
242s 13 (180874, 333339) 1096
242s 14 (180969, 333252)  504
242s 15 (181011, 333161)  326
242s 16 (180830, 333246) 1032
242s 17 (180763, 333104)  606
242s 18 (180694, 332972)  711
242s 19 (180625, 332847)  735
242s 20 (180555, 332707) 1052
242s > x[1:10, "zinc"] # idem
242s         coordinates zinc
242s 1  (181072, 333611) 1022
242s 2  (181025, 333558) 1141
242s 3  (181165, 333537)  640
242s 4  (181298, 333484)  257
242s 5  (181307, 333330)  269
242s 6  (181390, 333260)  281
242s 7  (181165, 333370)  346
242s 8  (181027, 333363)  406
242s 9  (181060, 333231)  347
242s 10 (181232, 333168)  183
242s > x[1:10, c("zinc", "cadmium")] # idem
242s         coordinates zinc cadmium
242s 1  (181072, 333611) 1022    11.7
242s 2  (181025, 333558) 1141     8.6
242s 3  (181165, 333537)  640     6.5
242s 4  (181298, 333484)  257     2.6
242s 5  (181307, 333330)  269     2.8
242s 6  (181390, 333260)  281     3.0
242s 7  (181165, 333370)  346     3.2
242s 8  (181027, 333363)  406     2.8
242s 9  (181060, 333231)  347     2.4
242s 10 (181232, 333168)  183     1.6
242s > x[["zinc"]]
242s  [1] 1022 1141  640  257  269  281  346  406  347  183  189  251 1096  504  326
242s [16] 1032  606  711  735 1052
242s > x[["lnzinc"]] <- log(x[["zinc"]])
242s > x
242s         coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
242s 1  (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
242s 2  (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
242s 3  (181165, 333537)     6.5     68  199  640 7.800 0.10302900 13.0     1    1
242s 4  (181298, 333484)     2.6     81  116  257 7.655 0.19009400  8.0     1    2
242s 5  (181307, 333330)     2.8     48  117  269 7.480 0.27709000  8.7     1    2
242s 6  (181390, 333260)     3.0     61  137  281 7.791 0.36406700  7.8     1    2
242s 7  (181165, 333370)     3.2     31  132  346 8.217 0.19009400  9.2     1    2
242s 8  (181027, 333363)     2.8     29  150  406 8.490 0.09215160  9.5     1    1
242s 9  (181060, 333231)     2.4     37  133  347 8.668 0.18461400 10.6     1    1
242s 10 (181232, 333168)     1.6     24   80  183 9.049 0.30970200  6.3     1    2
242s 11 (181191, 333115)     1.4     25   86  189 9.015 0.31511600  6.4     1    2
242s 12 (181032, 333031)     1.8     25   97  251 9.073 0.22812300  9.0     1    1
242s 13 (180874, 333339)    11.2     93  285 1096 7.320 0.00000000 15.4     1    1
242s 14 (180969, 333252)     2.5     31  183  504 8.815 0.11393200  8.4     1    1
242s 15 (181011, 333161)     2.0     27  130  326 8.937 0.16833600  9.1     1    1
242s 16 (180830, 333246)     9.5     86  240 1032 7.702 0.00000000 16.2     1    1
242s 17 (180763, 333104)     7.0     74  133  606 7.160 0.01222430 16.0     1    1
242s 18 (180694, 332972)     7.1     69  148  711 7.100 0.01222430 16.0     1    1
242s 19 (180625, 332847)     8.7     69  207  735 7.020 0.00000000 13.7     1    1
242s 20 (180555, 332707)    12.9     95  284 1052 6.860 0.00000000 14.8     1    1
242s    lime landuse dist.m   lnzinc
242s 1     1      Ah     50 6.929517
242s 2     1      Ah     30 7.039660
242s 3     1      Ah    150 6.461468
242s 4     0      Ga    270 5.549076
242s 5     0      Ah    380 5.594711
242s 6     0      Ga    470 5.638355
242s 7     0      Ah    240 5.846439
242s 8     0      Ab    120 6.006353
242s 9     0      Ab    240 5.849325
242s 10    0       W    420 5.209486
242s 11    0      Fh    400 5.241747
242s 12    0      Ag    300 5.525453
242s 13    1       W     20 6.999422
242s 14    0      Ah    130 6.222576
242s 15    0      Ah    220 5.786897
242s 16    1       W     10 6.939254
242s 17    1       W     10 6.406880
242s 18    1       W     10 6.566672
242s 19    1       W     10 6.599870
242s 20    1    <NA>     10 6.958448
242s > 
242s > print(summary(x[1:10, "zinc"])) # check bbox
242s Object of class SpatialPointsDataFrame
242s Coordinates:
242s      min    max
242s x 181025 181390
242s y 333168 333611
242s Is projected: NA 
242s proj4string : [NA]
242s Number of points: 10
242s Data attributes:
242s       zinc       
242s  Min.   : 183.0  
242s  1st Qu.: 272.0  
242s  Median : 346.5  
242s  Mean   : 489.2  
242s  3rd Qu.: 581.5  
242s  Max.   :1141.0  
242s > print(summary(x["zinc"])) # compare bbox
242s Object of class SpatialPointsDataFrame
242s Coordinates:
242s      min    max
242s x 180555 181390
242s y 332707 333611
242s Is projected: NA 
242s proj4string : [NA]
242s Number of points: 20
242s Data attributes:
242s       zinc       
242s  Min.   : 183.0  
242s  1st Qu.: 278.0  
242s  Median : 455.0  
242s  Mean   : 569.7  
242s  3rd Qu.: 806.8  
242s  Max.   :1141.0  
242s > 
242s > data(meuse.grid)
242s > coordinates(meuse.grid) = ~x+y
242s > gridded(meuse.grid) = TRUE
242s > plot(meuse.grid)
242s > 
242s BEGIN TEST fail1.R
242s 
242s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
242s Copyright (C) 2025 The R Foundation for Statistical Computing
242s Platform: x86_64-pc-linux-gnu
242s 
242s R is free software and comes with ABSOLUTELY NO WARRANTY.
242s You are welcome to redistribute it under certain conditions.
242s Type 'license()' or 'licence()' for distribution details.
242s 
242s R is a collaborative project with many contributors.
242s Type 'contributors()' for more information and
242s 'citation()' on how to cite R or R packages in publications.
242s 
242s Type 'demo()' for some demos, 'help()' for on-line help, or
242s 'help.start()' for an HTML browser interface to help.
242s Type 'q()' to quit R.
242s 
242s > options("rgdal_show_exportToProj4_warnings"="none")
242s > library(sp)
242s > data(meuse)
242s > x = meuse
242s > 
242s > coordinates(x) <- c("x", "y")
242s > inherits(try(proj4string(x) <- 1.5, silent = TRUE), "try-error")
242s [1] TRUE
242s > try(coordinates(a) <- cbind(1:10, 10:1))
242s > # fails because a is not found; passes if a assigned NULL, see pass1.R
242s > 
242s > x = meuse
242s > # invalid coordinate formulae:
242s > try(coordinates(x) <- ~log(x)+sqrt(y)) # no expressions allowed
242s Error : object 'a' not found
242s Error in `[.data.frame`(object, , -coord.numbers, drop = FALSE) : 
242s   undefined columns selected
242s Error in eval(predvars, data, env) : object 'z' not found
242s > try(coordinates(x) <- ~x+y+z) # z is not present
242s > x$x2 = x$x^2
242s > x$y2 = x$y^2
242s > try(coordinates(x) <- ~x+y+x2+y2) # 4D now passes check...
242s > x = meuse
242s > try(coordinates(x) <- ~x) # 1D not allowed
242s > 
242s > # is.na.sp.coords
242s > a = data.frame(cbind(xx=c(1,NA,2,10),yy=c(2,NA,NA,20)))
242s Error in validObject(.Object) : 
242s   invalid class “SpatialPoints” object: spatial.dimension should be 2 or more
242s > try(coordinates(a) <- c("xx", "yy")) # should fail!
242s Error in `coordinates<-`(`*tmp*`, value = c("xx", "yy")) : 
242s   coordinates are not allowed to contain missing values
242s > 
242s > x = meuse[1:4,]
242s > coordinates(x) = c(1,2)
242s > # this should fail -- zinc is not a row:
242s > #(and will break automatic testing, so outcommented!)
242s > #try(q <- x["zinc",])
242s > # this will issue warning under S-Plus, or a silent rename under R
242s > try(x[c("zinc", "copper", "zinc")])
242s        coordinates zinc copper zinc.1
242s 1 (181072, 333611) 1022     85   1022
242s 2 (181025, 333558) 1141     81   1141
242s 3 (181165, 333537)  640     68    640
242s 4 (181298, 333484)  257     81    257
242s > 
242s > # this will fail, as "x" is not in the data part:
242s > try(x[c("zinc", "x", "copper", "zinc")])
242s > 
242s > # row index containing missing values will fail:
242s > try(xx <- x[c(1:3,NA),])
242s Error in `[.data.frame`(x@data, i, j, ..., drop = FALSE) : 
242s   undefined columns selected
242s Error in x[c(1:3, NA), ] : NAs not permitted in row index
242s > 
242s > xx = data.frame(x=1:10, y=1:10)
242s > 
242s > # fails; use SpatialPoints() to create points without attribute 
242s > try(coordinates(xx) <- c("x", "y")) 
242s > 
242s > x = matrix(3, 5, 2)
242s > dimnames(x) = list(c(1,1:4), NULL)
242s > y = data.frame(a = 1:5, b = 5:1)
242s > try(SpatialPointsDataFrame(x, y)) # will complain:
242s > SpatialPointsDataFrame(x, y, match.ID = FALSE) # won't complain
242s Error in SpatialPointsDataFrame(x, y) : 
242s   row.names of data and dimnames of coords do not match
242s In addition: Warning message:
242s In SpatialPointsDataFrame(x, y) :
242s   forming a SpatialPointsDataFrame based on maching IDs, not on record order. Use match.ID = FALSE to match on record order
242s Warning messages:
242s 1: In validityMethod(object) :
242s   duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
242s 2: In validityMethod(as(object, superClass)) :
242s   duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
242s   coordinates a b
242s 1      (3, 3) 1 5
242s 2      (3, 3) 2 4
242s 3      (3, 3) 3 3
242s 4      (3, 3) 4 2
242s 5      (3, 3) 5 1
242s > 
242s > Sr1 = Polygon(cbind(c(2,4,4,1,2),c(2,3,5,4,2)))
242s > Sr2 = Polygon(cbind(c(5,4,2,5),c(2,3,2,2)))
242s > Sr3 = Polygon(cbind(c(4,4,5,10,4),c(5,3,2,5,5)))
242s > Sr4 = Polygon(cbind(c(5,6,6,5,5),c(4,4,3,3,4)), hole = TRUE)
242s > 
242s > Srs1 = Polygons(list(Sr1), "s1")
242s > Srs2 = Polygons(list(Sr2), "s2")
242s > Srs3 = Polygons(list(Sr3, Sr4), "s2")
242s > try(SR <- SpatialPolygons(list(Srs1,Srs2,Srs3))) # will complain
242s Error in validObject(res) : 
242s   invalid class “SpatialPolygons” object: non-unique Polygons ID slot values
242s > Srs3 = Polygons(list(Sr3, Sr4), "s3/4")
242s > SR = SpatialPolygons(list(Srs1,Srs2,Srs3)) # won't complain
242s > try(SRx <- SR[c(1,2,NA),])
242s Error in SR[c(1, 2, NA), ] : NAs not permitted in row index
242s > 
242s > attr = data.frame(a=1:3, b=3:1, row.names=c("s1", "s2", "s3"))
242s > try(SrDf <- SpatialPolygonsDataFrame(SR, attr)) # will complain
242s Error in SpatialPolygonsDataFrame(SR, attr) : 
242s   row.names of data and Polygons IDs do not match
242s > SrDf = SpatialPolygonsDataFrame(SR, attr, match.ID = FALSE) # won't complain
242s > attr = data.frame(a=1:3, b=3:1, row.names=c("s1", "s2", "s3/4"))
242s > SrDf = SpatialPolygonsDataFrame(SR, attr) # won't complain
242s > 
242s > l1 = cbind(c(1,2,3),c(3,2,2))
242s > l1a = cbind(l1[,1]+.05,l1[,2]+.05)
242s > l2 = cbind(c(1,2,3),c(1,1.5,1))
242s > Sl1 = Line(l1)
242s > Sl1a = Line(l1a)
242s > Sl2 = Line(l2)
242s > S1 = Lines(list(Sl1, Sl1a), ID="a")
242s > S2 = Lines(list(Sl2), ID="b")
242s > S3 = Lines(list(Sl2), ID="a")
242s > Sl = SpatialLines(list(S1,S2)) # won't complain
242s > try(Sl1 <- SpatialLines(list(S1,S3))) # will complain
242s > try(Sl1 <- Sl[c(NA,2),]) # will fail
242s Error in validObject(.Object) : 
242s   invalid class “SpatialLines” object: non-unique Lines ID slot values
242s > 
242s > df = data.frame(z = c(1,2), row.names=sapply(slot(Sl, "lines"), function(x) slot(x, "ID")))
242s Error in Sl[c(NA, 2), ] : NAs not permitted in row index
242s > Sldf = SpatialLinesDataFrame(Sl, data = df) # won't complain
242s > df1 = data.frame(z = c(1,2))
242s > try(Sldf1 <- SpatialLinesDataFrame(Sl, data = df1)) # will complain
242s > Sldf1 = SpatialLinesDataFrame(Sl, data = df1, match.ID = FALSE) # won't complain
242s Error in SpatialLinesDataFrame(Sl, data = df1) : 
242s   row.names of data and Lines IDs do not match
242s > try(Sldf1 <- Sldf1[c(1,NA),])
242s > 
242s > data(meuse.grid)
242s Error in Sldf1[c(1, NA), ] : NAs not permitted in row index
242s > gridded(meuse.grid) = ~x+y
242s > try(x <- meuse.grid[c(1:10,NA,12),])
242s > fullgrid(meuse.grid) = TRUE
242s Error in meuse.grid[c(1:10, NA, 12), ] : NAs not permitted in row index
242s > try(x <- meuse.grid[c(1:10,NA,12),])
242s > 
242s > try(x <- meuse[[c("zinc", "cadmium")]])
242s Error in meuse.grid[c(1:10, NA, 12), ] : NAs not permitted in index
242s Error in .subset2(x, i, exact = exact) : subscript out of bounds
242s > try(meuse[[c("zn", "cd")]] <- cbind(meuse$zinc, meuse$cadmium))
242s Error in `[[<-`(`*tmp*`, i, value = value) : no such index at level 1
242s 
242s > 
242s > data(meuse.grid)
242s > coordinates(meuse.grid) <- c("x", "y")
242s > gridded(meuse.grid) <- TRUE
242s > gridparameters(meuse.grid)
242s   cellcentre.offset cellsize cells.dim
242s x            178460       40        78
242s y            329620       40       104
242s > 
242s > image(meuse.grid)
242s > image(meuse.grid[2])
242s > image(meuse.grid, 2)
242s > try(image(meuse.grid, 0))
242s Error in .subset2(x, i, exact = exact) : subscript out of bounds
242s > image(meuse.grid[3], breaks=c(0,.2,.5,.8,1), col = bpy.colors(4))
242s > image(meuse.grid, 3, zlim = c(0,.3))
242s > image(meuse.grid, 3, zlim = c(.3,.1))
242s > image(meuse.grid, 3, zlim = c(.2,.8))
242s > image(meuse.grid, 3, zlim = c(.2,.8), breaks = c(.2,.4,.6,.8), 
242s + 	col = bpy.colors(3))
242s > 
242s > data(meuse.grid)
242s > set.seed(1)
242s > meuse.grid$x <- meuse.grid$x + rnorm(length(meuse.grid$x), 0, 0.0002)
242s > meuse.grid$y <- meuse.grid$y + rnorm(length(meuse.grid$y), 0, 0.0002)
242s > coordinates(meuse.grid) <- c("x", "y")
242s > try(gridded(meuse.grid) <- TRUE)
242s Error in points2grid(points, tolerance, round) : 
242s   dimension 1 : coordinate intervals are not constant
242s suggested tolerance minimum: 0.964318 
242s > try(meuse.grid <- SpatialPixelsDataFrame(as(meuse.grid, "SpatialPoints"),
242s +   data=as(meuse.grid, "data.frame"), tolerance=0.077))
242s > gridparameters(meuse.grid)
242s   cellcentre.offset cellsize cells.dim
242s x            178460 39.99912        78
242s y            329620 39.99920       104
242s > 
242s > data(meuse.grid_ll)
242s > try(gridded(meuse.grid_ll) <- TRUE)
242s suggested tolerance minimum: 0.818323 
242s > try(meuse.grid_ll <- SpatialPixelsDataFrame(as(meuse.grid_ll, "SpatialPoints"), data=as(meuse.grid_ll, "data.frame"), tolerance=0.9))
242s Error in points2grid(points, tolerance, round) : 
242s   dimension 1 : coordinate intervals are not constant
242s > gridparameters(meuse.grid_ll)
242s   cellcentre.offset     cellsize cells.dim
242s x          5.721109 0.0005312853        84
242s y         50.955770 0.0003318105       112
242s > 
242s > try(CRS("+proj=latlon +ellps=WGS84"))
243s Coordinate Reference System:
243s Deprecated Proj.4 representation: +proj=longlat +ellps=WGS84 +no_defs 
243s WKT2 2019 representation:
243s GEOGCRS["unknown",
243s     DATUM["Unknown based on WGS 84 ellipsoid",
243s         ELLIPSOID["WGS 84",6378137,298.257223563,
243s             LENGTHUNIT["metre",1],
243s             ID["EPSG",7030]]],
243s     PRIMEM["Greenwich",0,
243s         ANGLEUNIT["degree",0.0174532925199433],
243s         ID["EPSG",8901]],
243s     CS[ellipsoidal,2],
243s         AXIS["longitude",east,
243s             ORDER[1],
243s             ANGLEUNIT["degree",0.0174532925199433,
243s                 ID["EPSG",9122]]],
243s         AXIS["latitude",north,
243s             ORDER[2],
243s             ANGLEUNIT["degree",0.0174532925199433,
243s                 ID["EPSG",9122]]]] 
243s > try(CRS("+proj=lonlat +ellps=WGS84"))
243s Coordinate Reference System:
243s Deprecated Proj.4 representation: +proj=longlat +ellps=WGS84 +no_defs 
243s WKT2 2019 representation:
243s GEOGCRS["unknown",
243s     DATUM["Unknown based on WGS 84 ellipsoid",
243s         ELLIPSOID["WGS 84",6378137,298.257223563,
243s             LENGTHUNIT["metre",1],
243s             ID["EPSG",7030]]],
243s     PRIMEM["Greenwich",0,
243s         ANGLEUNIT["degree",0.0174532925199433],
243s         ID["EPSG",8901]],
243s     CS[ellipsoidal,2],
243s         AXIS["longitude",east,
243s             ORDER[1],
243s             ANGLEUNIT["degree",0.0174532925199433,
243s                 ID["EPSG",9122]]],
243s         AXIS["latitude",north,
243s             ORDER[2],
243s             ANGLEUNIT["degree",0.0174532925199433,
243s                 ID["EPSG",9122]]]] 
243s > 
243s BEGIN TEST grid.R
243s 
243s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
243s Copyright (C) 2025 The R Foundation for Statistical Computing
243s Platform: x86_64-pc-linux-gnu
243s 
243s R is free software and comes with ABSOLUTELY NO WARRANTY.
243s You are welcome to redistribute it under certain conditions.
243s Type 'license()' or 'licence()' for distribution details.
243s 
243s R is a collaborative project with many contributors.
243s Type 'contributors()' for more information and
243s 'citation()' on how to cite R or R packages in publications.
243s 
243s Type 'demo()' for some demos, 'help()' for on-line help, or
243s 'help.start()' for an HTML browser interface to help.
243s Type 'q()' to quit R.
243s 
243s > options("rgdal_show_exportToProj4_warnings"="none")
243s > library(sp)
243s > data(meuse.grid)
243s > x = meuse.grid
243s > coordinates(x) = c("x", "y")
243s > gridded(x) = TRUE
243s > gridded(x)
243s [1] TRUE
243s > image(x["dist"])
243s > 
243s > fullgrid(x) = TRUE
243s > fullgrid(x)
243s [1] TRUE
243s > # summary(x)
243s > gridparameters(x)
243s   cellcentre.offset cellsize cells.dim
243s x            178460       40        78
243s y            329620       40       104
243s > class(as(x, "matrix"))
243s [1] "matrix" "array" 
243s > 
243s > fullgrid(x) = FALSE
243s Warning message:
243s In as.matrix.SpatialGridDataFrame(from) :
243s   as.matrix.SpatialGridDataFrame uses first column;
243s  use subset or [] for other columns
243s > fullgrid(x)
243s [1] FALSE
243s > # summary(x)
243s > class(as(x, "matrix"))
243s Warning message:
243s In as.matrix.SpatialGridDataFrame(x, ...) :
243s   as.matrix.SpatialGridDataFrame uses first column;
243s  use subset or [] for other columns
243s [1] "matrix" "array" 
243s > gridparameters(x)
243s   cellcentre.offset cellsize cells.dim
243s x            178460       40        78
243s y            329620       40       104
243s > 
243s > df = data.frame(z = c(1:6,NA,8,9), 
243s + 	xc = c(1,1,1,2,2,2,3,3,3), 
243s + 	yc = c(rep(c(0, 1.5, 3),3)))
243s > 
243s > coordinates(df) = ~xc+yc
243s > gridded(df) = TRUE
243s > gridparameters(df)
243s    cellcentre.offset cellsize cells.dim
243s xc                 1      1.0         3
243s yc                 0      1.5         3
243s > as(df, "matrix")
243s      [,1] [,2] [,3]
243s [1,]    3    2    1
243s [2,]    6    5    4
243s [3,]    9    8   NA
243s > 
243s > # get grid topology:
243s > grd = points2grid(as(df, "SpatialPoints"), 1e-31) 
243s > grd
243s                   xc  yc
243s cellcentre.offset  1 0.0
243s cellsize           1 1.5
243s cells.dim          3 3.0
243s > getGridIndex(coordinates(df), grd)
243s [1] 7 4 1 8 5 2 9 6 3
243s > 
243s > g = SpatialGrid(grid = grd)
243s > fullgrid(g)
243s [1] TRUE
243s > fullgrid(g) = TRUE
243s > class(g)
243s [1] "SpatialGrid"
243s attr(,"package")
243s [1] "sp"
243s > # the next one has to fail:
243s > fullgrid(g) <- FALSE
243s > class(g)
243s [1] "SpatialPixels"
243s attr(,"package")
243s [1] "sp"
243s > 
243s > # summary(df)
243s > image(df["z"])
243s > as.image.SpatialGridDataFrame(df)
243s $x
243s [1] 1 2 3
243s 
243s $y
243s [1] 0.0 1.5 3.0
243s 
243s $z
243s      [,1] [,2] [,3]
243s [1,]    1    2    3
243s [2,]    4    5    6
243s [3,]   NA    8    9
243s 
243s > as.image.SpatialGridDataFrame(df["z"])
243s $x
243s [1] 1 2 3
243s 
243s $y
243s [1] 0.0 1.5 3.0
243s 
243s $z
243s      [,1] [,2] [,3]
243s [1,]    1    2    3
243s [2,]    4    5    6
243s [3,]   NA    8    9
243s 
243s > coordinatevalues(getGridTopology(df))
243s $xc
243s [1] 1 2 3
243s 
243s $yc
243s [1] 3.0 1.5 0.0
243s 
243s > 
243s > as.data.frame(df)
243s    z xc  yc
243s 1  1  1 0.0
243s 2  2  1 1.5
243s 3  3  1 3.0
243s 4  4  2 0.0
243s 5  5  2 1.5
243s 6  6  2 3.0
243s 7 NA  3 0.0
243s 8  8  3 1.5
243s 9  9  3 3.0
243s > 
243s > fullgrid(df) = TRUE
243s > as.data.frame(df)
243s   z xc  yc
243s 1 3  1 3.0
243s 2 6  2 3.0
243s 3 9  3 3.0
243s 4 2  1 1.5
243s 5 5  2 1.5
243s 6 8  3 1.5
243s 7 1  1 0.0
243s 8 4  2 0.0
243s > 
243s > fullgrid(df) = FALSE  
243s > as.data.frame(df)
243s   z xc  yc
243s 1 3  1 3.0
243s 2 6  2 3.0
243s 3 9  3 3.0
243s 4 2  1 1.5
243s 5 5  2 1.5
243s 6 8  3 1.5
243s 7 1  1 0.0
243s 8 4  2 0.0
243s > 
243s > fullgrid(df) = TRUE
243s > fullgrid(df) = FALSE
243s > as.data.frame(df)
243s   z xc  yc
243s 1 3  1 3.0
243s 2 6  2 3.0
243s 3 9  3 3.0
243s 4 2  1 1.5
243s 5 5  2 1.5
243s 6 8  3 1.5
243s 7 1  1 0.0
243s 8 4  2 0.0
243s > 
243s > df = as.data.frame(df)
243s > set.seed(133331)
243s > df$xc = df$xc + rep(.001*rnorm(3), 3)[1:8]
243s > df.sp = SpatialPoints(df[c("xc", "yc")])
243s > df.grd = SpatialPixels(df.sp, tolerance = .01)
243s > df.grd[1:4,,tolerance=.01,drop=TRUE]
243s Object of class SpatialPixels
243s Grid topology:
243s    cellcentre.offset  cellsize cells.dim
243s xc          1.000433 0.9995197         3
243s yc          1.500000 1.5000000         2
243s SpatialPoints:
243s         xc  yc
243s 1 1.000433 3.0
243s 2 1.997926 3.0
243s 3 2.999472 3.0
243s 4 1.000433 1.5
243s Coordinate Reference System (CRS) arguments: NA 
243s > df.grd[1:4,,tolerance=.01]
243s Object of class SpatialPixels
243s Grid topology:
243s    cellcentre.offset  cellsize cells.dim
243s xc          1.000433 0.9995197         3
243s yc          0.000000 1.5000000         3
243s SpatialPoints:
243s         xc  yc
243s 1 1.000433 3.0
243s 2 1.997926 3.0
243s 3 2.999472 3.0
243s 4 1.000433 1.5
243s Coordinate Reference System (CRS) arguments: NA 
243s > 
243s BEGIN TEST point.in.polygon.R
243s 
243s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
243s Copyright (C) 2025 The R Foundation for Statistical Computing
243s Platform: x86_64-pc-linux-gnu
243s 
243s R is free software and comes with ABSOLUTELY NO WARRANTY.
243s You are welcome to redistribute it under certain conditions.
243s Type 'license()' or 'licence()' for distribution details.
243s 
243s R is a collaborative project with many contributors.
243s Type 'contributors()' for more information and
243s 'citation()' on how to cite R or R packages in publications.
243s 
243s Type 'demo()' for some demos, 'help()' for on-line help, or
243s 'help.start()' for an HTML browser interface to help.
243s Type 'q()' to quit R.
243s 
243s > options("rgdal_show_exportToProj4_warnings"="none")
243s > library(sp)
243s > 
243s > # open polygon:
243s > print(point.in.polygon(1:10,1:10,c(3,5,5,3),c(3,3,5,5)))
243s  [1] 0 0 3 1 3 0 0 0 0 0
243s > # closed polygon:
243s > print(point.in.polygon(1:10,rep(4,10),c(3,5,5,3,3),c(3,3,5,5,3)))
243s  [1] 0 0 2 1 2 0 0 0 0 0
243s > 
243s BEGIN TEST sel.R
243s 
243s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
243s Copyright (C) 2025 The R Foundation for Statistical Computing
243s Platform: x86_64-pc-linux-gnu
243s 
243s R is free software and comes with ABSOLUTELY NO WARRANTY.
243s You are welcome to redistribute it under certain conditions.
243s Type 'license()' or 'licence()' for distribution details.
243s 
243s R is a collaborative project with many contributors.
243s Type 'contributors()' for more information and
243s 'citation()' on how to cite R or R packages in publications.
243s 
243s Type 'demo()' for some demos, 'help()' for on-line help, or
243s 'help.start()' for an HTML browser interface to help.
243s Type 'q()' to quit R.
243s 
243s > options("rgdal_show_exportToProj4_warnings"="none")
243s > library(sp)
244s > x = c(0.5, 1.5, 0.5, 1.5, 1.6)
244s > y = c(1.5, 1.5, 0.5, 0.5, 0.5)
244s > xy = cbind(x,y)
244s > dimnames(xy)[[1]] = c("a", "b", "c", "d", "e")
244s > pts = SpatialPoints(xy)
244s > z = data.frame(z1 = 1:5, z2=5:1, f = c("a", "a", "b", "b", "b"))
244s > row.names(z) = c("a", "b", "c", "d", "e")
244s > ptsdf = SpatialPointsDataFrame(pts, z)
244s > 
244s > xpol = c(0,1,1,0,0)
244s > ypol = c(0,0,1,1,0)
244s > pol = SpatialPolygons(list(
244s + 	Polygons(list(Polygon(cbind(xpol-1,ypol))), ID="x9"),
244s + 	Polygons(list(Polygon(cbind(xpol,ypol))), ID="x2"),
244s + 	Polygons(list(Polygon(cbind(xpol,ypol-1))), ID="x3"),
244s + 	Polygons(list(Polygon(cbind(xpol+1,ypol))), ID="x4")
244s + 	))
244s > z = data.frame(z = c(10, 15, 25, 3), zz = 1:4, f = c("z", "q", "r", "z"), 
244s + 	row.names = c("x9", "x2", "x3", "x4"))
244s > poldf = SpatialPolygonsDataFrame(pol, z)
244s > plot(pol, xlim = c(-1.5, 2))
244s > points(pts, col='red')
244s > 
244s > over(pts, pol)
244s  a  b  c  d  e 
244s NA NA  2  4  4 
244s > over(pts, poldf)
244s    z zz    f
244s a NA NA <NA>
244s b NA NA <NA>
244s c 15  2    q
244s d  3  4    z
244s e  3  4    z
244s > over(pts, poldf[1:2], fn = mean)
244s    z zz
244s a NA NA
244s b NA NA
244s c 15  2
244s d  3  4
244s e  3  4
244s > 
244s > #rbind(poldf, over(pts, poldf[1:2], fn = mean))
244s > 
244s > over(pol, pts)
244s x9 x2 x3 x4 
244s NA  3 NA  4 
244s > over(pol, ptsdf)
244s    z1 z2    f
244s x9 NA NA <NA>
244s x2  3  3    b
244s x3 NA NA <NA>
244s x4  4  2    b
244s > over(pol, ptsdf[1:2], fn = mean)
244s     z1  z2
244s x9  NA  NA
244s x2 3.0 3.0
244s x3  NA  NA
244s x4 4.5 1.5
244s > 
244s > pts[pol]
244s SpatialPoints:
244s     x   y
244s c 0.5 0.5
244s d 1.5 0.5
244s e 1.6 0.5
244s Coordinate Reference System (CRS) arguments: NA 
244s > 
244s > points(pts[pol], col='green', pch=16, cex=.8)
244s > summary(pol[pts])
244s Object of class SpatialPolygons
244s Coordinates:
244s   min max
244s x   0   2
244s y   0   1
244s Is projected: NA 
244s proj4string : [NA]
244s > plot(pol[pts], border='blue', add=TRUE)
244s > 
244s > gt = GridTopology(c(.5,.5), c(1,1), c(3,2))
244s > sg = SpatialGrid(gt)
244s > df6 = data.frame(z = 6:1, f = c("a", "a", "b", "b", "c", "c"))
244s > sgdf = SpatialGridDataFrame(gt, df6)
244s > over(sg, pol)
244s  1  2  3  4  5  6 
244s NA NA NA  2  4 NA 
244s > over(sg, poldf)
244s    z zz    f
244s 1 NA NA <NA>
244s 2 NA NA <NA>
244s 3 NA NA <NA>
244s 4 15  2    q
244s 5  3  4    z
244s 6 NA NA <NA>
244s > over(sg, poldf[1:2])
244s    z zz
244s 1 NA NA
244s 2 NA NA
244s 3 NA NA
244s 4 15  2
244s 5  3  4
244s 6 NA NA
244s > 
244s > spix = as(sg, "SpatialPixels")
244s > spixdf = as(sgdf, "SpatialPixelsDataFrame")
244s > over(spix, pol)
244s  1  2  3  4  5  6 
244s NA NA NA  2  4 NA 
244s > over(spix, poldf)
244s    z zz    f
244s 1 NA NA <NA>
244s 2 NA NA <NA>
244s 3 NA NA <NA>
244s 4 15  2    q
244s 5  3  4    z
244s 6 NA NA <NA>
244s > over(spix, poldf[1:2])
244s    z zz
244s 1 NA NA
244s 2 NA NA
244s 3 NA NA
244s 4 15  2
244s 5  3  4
244s 6 NA NA
244s > 
244s > over(pol, sg)
244s x9 x2 x3 x4 
244s NA  4 NA  5 
244s > over(pol, sgdf)
244s     z    f
244s x9 NA <NA>
244s x2  3    b
244s x3 NA <NA>
244s x4  2    c
244s > over(pol, sgdf[1], fn = mean)
244s     z
244s x9 NA
244s x2  3
244s x3 NA
244s x4  2
244s > 
244s > over(pol, spix)
244s x9 x2 x3 x4 
244s NA  4 NA  5 
244s > over(pol, spixdf)
244s     z    f
244s x9 NA <NA>
244s x2  3    b
244s x3 NA <NA>
244s x4  2    c
244s > over(pol, spixdf[1], fn = mean)
244s     z
244s x9 NA
244s x2  3
244s x3 NA
244s x4  2
244s > 
244s > over(pts, sg)
244s a b c d e 
244s 1 2 4 5 5 
244s > over(pts, spix)
244s a b c d e 
244s 1 2 4 5 5 
244s > over(pts, sgdf)
244s   z f
244s a 6 a
244s b 5 a
244s c 3 b
244s d 2 c
244s e 2 c
244s > over(pts, spixdf)
244s   z f
244s a 6 a
244s b 5 a
244s c 3 b
244s d 2 c
244s e 2 c
244s > 
244s > #over(pts, sg, returnList=TRUE)
244s > #over(pts, spix, returnList=TRUE)
244s > #over(pts, sgdf, returnList=TRUE)
244s > #over(pts, spixdf, returnList=TRUE)
244s > 
244s BEGIN TEST sp1.R
244s 
244s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
244s Copyright (C) 2025 The R Foundation for Statistical Computing
244s Platform: x86_64-pc-linux-gnu
244s 
244s R is free software and comes with ABSOLUTELY NO WARRANTY.
244s You are welcome to redistribute it under certain conditions.
244s Type 'license()' or 'licence()' for distribution details.
244s 
244s R is a collaborative project with many contributors.
244s Type 'contributors()' for more information and
244s 'citation()' on how to cite R or R packages in publications.
244s 
244s Type 'demo()' for some demos, 'help()' for on-line help, or
244s 'help.start()' for an HTML browser interface to help.
244s Type 'q()' to quit R.
244s 
244s > options("rgdal_show_exportToProj4_warnings"="none")
244s > library(sp)
244s > data(meuse)
244s > x = meuse
244s > nm <- names(meuse)
244s > # rename to non-default names:
244s > nm[1] <- "xcoord"
244s > nm[2] <- "ycoord"
244s > names(x) <- nm
244s > # change column order
244s > x = x[ , c(3:14,2,1)] 
244s > coordinates(x) <- c("xcoord", "ycoord") # columns named xcoord and ycoord
244s > coordinates(x)[1:10,] 
244s    xcoord ycoord
244s 1  181072 333611
244s 2  181025 333558
244s 3  181165 333537
244s 4  181298 333484
244s 5  181307 333330
244s 6  181390 333260
244s 7  181165 333370
244s 8  181027 333363
244s 9  181060 333231
244s 10 181232 333168
244s > meuse[1:10,] 
244s         x      y cadmium copper lead zinc  elev       dist   om ffreq soil lime
244s 1  181072 333611    11.7     85  299 1022 7.909 0.00135803 13.6     1    1    1
244s 2  181025 333558     8.6     81  277 1141 6.983 0.01222430 14.0     1    1    1
244s 3  181165 333537     6.5     68  199  640 7.800 0.10302900 13.0     1    1    1
244s 4  181298 333484     2.6     81  116  257 7.655 0.19009400  8.0     1    2    0
244s 5  181307 333330     2.8     48  117  269 7.480 0.27709000  8.7     1    2    0
244s 6  181390 333260     3.0     61  137  281 7.791 0.36406700  7.8     1    2    0
244s 7  181165 333370     3.2     31  132  346 8.217 0.19009400  9.2     1    2    0
244s 8  181027 333363     2.8     29  150  406 8.490 0.09215160  9.5     1    1    0
244s 9  181060 333231     2.4     37  133  347 8.668 0.18461400 10.6     1    1    0
244s 10 181232 333168     1.6     24   80  183 9.049 0.30970200  6.3     1    2    0
244s    landuse dist.m
244s 1       Ah     50
244s 2       Ah     30
244s 3       Ah    150
244s 4       Ga    270
244s 5       Ah    380
244s 6       Ga    470
244s 7       Ah    240
244s 8       Ab    120
244s 9       Ab    240
244s 10       W    420
244s > class(x)
244s [1] "SpatialPointsDataFrame"
244s attr(,"package")
244s [1] "sp"
244s > sum = summary(x)
244s > print(sum)
244s Object of class SpatialPointsDataFrame
244s Coordinates:
244s           min    max
244s xcoord 178605 181390
244s ycoord 329714 333611
244s Is projected: NA 
244s proj4string : [NA]
244s Number of points: 155
244s Data attributes:
244s     cadmium           copper            lead            zinc       
244s  Min.   : 0.200   Min.   : 14.00   Min.   : 37.0   Min.   : 113.0  
244s  1st Qu.: 0.800   1st Qu.: 23.00   1st Qu.: 72.5   1st Qu.: 198.0  
244s  Median : 2.100   Median : 31.00   Median :123.0   Median : 326.0  
244s  Mean   : 3.246   Mean   : 40.32   Mean   :153.4   Mean   : 469.7  
244s  3rd Qu.: 3.850   3rd Qu.: 49.50   3rd Qu.:207.0   3rd Qu.: 674.5  
244s  Max.   :18.100   Max.   :128.00   Max.   :654.0   Max.   :1839.0  
244s                                                                    
244s       elev             dist               om         ffreq  soil   lime   
244s  Min.   : 5.180   Min.   :0.00000   Min.   : 1.000   1:84   1:97   0:111  
244s  1st Qu.: 7.546   1st Qu.:0.07569   1st Qu.: 5.300   2:48   2:46   1: 44  
244s  Median : 8.180   Median :0.21184   Median : 6.900   3:23   3:12          
244s  Mean   : 8.165   Mean   :0.24002   Mean   : 7.478                        
244s  3rd Qu.: 8.955   3rd Qu.:0.36407   3rd Qu.: 9.000                        
244s  Max.   :10.520   Max.   :0.88039   Max.   :17.000                        
244s                                     NA's   :2                             
244s     landuse       dist.m      
244s  W      :50   Min.   :  10.0  
244s  Ah     :39   1st Qu.:  80.0  
244s  Am     :22   Median : 270.0  
244s  Fw     :10   Mean   : 290.3  
244s  Ab     : 8   3rd Qu.: 450.0  
244s  (Other):25   Max.   :1000.0  
244s  NA's   : 1                   
244s > coordinates(x)
244s     xcoord ycoord
244s 1   181072 333611
244s 2   181025 333558
244s 3   181165 333537
244s 4   181298 333484
244s 5   181307 333330
244s 6   181390 333260
244s 7   181165 333370
244s 8   181027 333363
244s 9   181060 333231
244s 10  181232 333168
244s 11  181191 333115
244s 12  181032 333031
244s 13  180874 333339
244s 14  180969 333252
244s 15  181011 333161
244s 16  180830 333246
244s 17  180763 333104
244s 18  180694 332972
244s 19  180625 332847
244s 20  180555 332707
244s 21  180642 332708
244s 22  180704 332717
244s 23  180704 332664
244s 24  181153 332925
244s 25  181147 332823
244s 26  181167 332778
244s 27  181008 332777
244s 28  180973 332687
244s 29  180916 332753
244s 30  181352 332946
244s 31  181133 332570
244s 32  180878 332489
244s 33  180829 332450
244s 34  180954 332399
244s 35  180956 332318
244s 37  180710 332330
244s 38  180632 332445
244s 39  180530 332538
244s 40  180478 332578
244s 41  180383 332476
244s 42  180494 332330
244s 43  180561 332193
244s 44  180451 332175
244s 45  180410 332031
244s 46  180355 332299
244s 47  180292 332157
244s 48  180283 332014
244s 49  180282 331861
244s 50  180270 331707
244s 51  180199 331591
244s 52  180135 331552
244s 53  180237 332351
244s 54  180103 332297
244s 55  179973 332255
244s 56  179826 332217
244s 57  179687 332161
244s 58  179792 332035
244s 59  179902 332113
244s 60  180100 332213
244s 61  179604 332059
244s 62  179526 331936
244s 63  179495 331770
244s 64  179489 331633
244s 65  179414 331494
244s 66  179334 331366
244s 67  179255 331264
244s 69  179470 331125
244s 75  179692 330933
244s 76  179852 330801
244s 79  179140 330955
244s 80  179128 330867
244s 81  179065 330864
244s 82  179007 330727
244s 83  179110 330758
244s 84  179032 330645
244s 85  179095 330636
244s 86  179058 330510
244s 87  178810 330666
244s 88  178912 330779
244s 89  178981 330924
244s 90  179076 331005
244s 123 180151 330353
244s 160 179211 331175
244s 163 181118 333214
244s 70  179474 331304
244s 71  179559 331423
244s 91  179022 330873
244s 92  178953 330742
244s 93  178875 330516
244s 94  178803 330349
244s 95  179029 330394
244s 96  178605 330406
244s 97  178701 330557
244s 98  179547 330245
244s 99  179301 330179
244s 100 179405 330567
244s 101 179462 330766
244s 102 179293 330797
244s 103 179180 330710
244s 104 179206 330398
244s 105 179618 330458
244s 106 179782 330540
244s 108 179980 330773
244s 109 180067 331185
244s 110 180162 331387
244s 111 180451 331473
244s 112 180328 331158
244s 113 180276 330963
244s 114 180114 330803
244s 115 179881 330912
244s 116 179774 330921
244s 117 179657 331150
244s 118 179731 331245
244s 119 179717 331441
244s 120 179446 331422
244s 121 179524 331565
244s 122 179644 331730
244s 124 180321 330366
244s 125 180162 331837
244s 126 180029 331720
244s 127 179797 331919
244s 128 179642 331955
244s 129 179849 332142
244s 130 180265 332297
244s 131 180107 332101
244s 132 180462 331947
244s 133 180478 331822
244s 134 180347 331700
244s 135 180862 333116
244s 136 180700 332882
244s 161 180201 331160
244s 162 180173 331923
244s 137 180923 332874
244s 138 180467 331694
244s 140 179917 331325
244s 141 179822 331242
244s 142 179991 331069
244s 143 179120 330578
244s 144 179034 330561
244s 145 179085 330433
244s 146 179236 330046
244s 147 179456 330072
244s 148 179550 329940
244s 149 179445 329807
244s 150 179337 329870
244s 151 179245 329714
244s 152 179024 329733
244s 153 178786 329822
244s 154 179135 329890
244s 155 179030 330082
244s 156 179184 330182
244s 157 179085 330292
244s 158 178875 330311
244s 159 179466 330381
244s 164 180627 330190
244s > 
244s > x <- as.data.frame(x)
244s > class(x)
244s [1] "data.frame"
244s > 
244s > x[1:10, c("xcoord", "ycoord")]
244s    xcoord ycoord
244s 1  181072 333611
244s 2  181025 333558
244s 3  181165 333537
244s 4  181298 333484
244s 5  181307 333330
244s 6  181390 333260
244s 7  181165 333370
244s 8  181027 333363
244s 9  181060 333231
244s 10 181232 333168
244s > 
244s > x = meuse[1:4,]
244s > coordinates(x) = c(1,2)
244s > # row 1,2; cols 1:10
244s > x[1:2,1:10]
244s        coordinates cadmium copper lead zinc  elev       dist   om ffreq soil
244s 1 (181072, 333611)    11.7     85  299 1022 7.909 0.00135803 13.6     1    1
244s 2 (181025, 333558)     8.6     81  277 1141 6.983 0.01222430 14.0     1    1
244s   lime
244s 1    1
244s 2    1
244s > # row 2, coord+col 9,10
244s > x[2,9:10]
244s        coordinates soil lime
244s 2 (181025, 333558)    1    1
244s > # coordinates, col 9+10
244s > x[,9:10]
244s        coordinates soil lime
244s 1 (181072, 333611)    1    1
244s 2 (181025, 333558)    1    1
244s 3 (181165, 333537)    1    1
244s 4 (181298, 333484)    2    0
244s > # coordinates + col 9:
244s > x[,9]
244s        coordinates soil
244s 1 (181072, 333611)    1
244s 2 (181025, 333558)    1
244s 3 (181165, 333537)    1
244s 4 (181298, 333484)    2
244s > # coordinates + zinc column:
244s > x["zinc"]
244s        coordinates zinc
244s 1 (181072, 333611) 1022
244s 2 (181025, 333558) 1141
244s 3 (181165, 333537)  640
244s 4 (181298, 333484)  257
244s > # second row, coordinates + zinc
244s > x[2,"zinc"]
244s        coordinates zinc
244s 2 (181025, 333558) 1141
244s > # select; re-orders:
244s > x[c("zinc","copper")]
244s        coordinates zinc copper
244s 1 (181072, 333611) 1022     85
244s 2 (181025, 333558) 1141     81
244s 3 (181165, 333537)  640     68
244s 4 (181298, 333484)  257     81
244s > # back as data.frame
244s > as.data.frame(x)[1:3, c("zinc","copper","x", "y")]
244s   zinc copper      x      y
244s 1 1022     85 181072 333611
244s 2 1141     81 181025 333558
244s 3  640     68 181165 333537
244s > 
244s BEGIN TEST spDists.R
244s 
244s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
244s Copyright (C) 2025 The R Foundation for Statistical Computing
244s Platform: x86_64-pc-linux-gnu
244s 
244s R is free software and comes with ABSOLUTELY NO WARRANTY.
244s You are welcome to redistribute it under certain conditions.
244s Type 'license()' or 'licence()' for distribution details.
244s 
244s R is a collaborative project with many contributors.
244s Type 'contributors()' for more information and
244s 'citation()' on how to cite R or R packages in publications.
244s 
244s Type 'demo()' for some demos, 'help()' for on-line help, or
244s 'help.start()' for an HTML browser interface to help.
244s Type 'q()' to quit R.
244s 
244s > options("rgdal_show_exportToProj4_warnings"="none")
244s > library(sp)
244s > data(meuse)
244s > data(meuse.grid)
244s > coordinates(meuse) = ~x+y
244s > coordinates(meuse.grid) = ~x+y
244s > x = coordinates(meuse)
244s > y = coordinates(meuse.grid)
244s > out = spDists(meuse,meuse.grid)
244s > out2 = as.matrix(dist(rbind(coordinates(meuse),coordinates(meuse.grid))))
244s > out2 = out2[1:155,155+1:nrow(y)]
244s > # should be equal:
244s > all.equal(out2, out, check.attributes = FALSE)
244s [1] TRUE
244s > out = spDists(meuse.grid, meuse)
244s > all.equal(out2, t(out), check.attributes = FALSE)
244s [1] TRUE
244s > 
244s BEGIN TEST spplot.R
244s 
244s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
244s Copyright (C) 2025 The R Foundation for Statistical Computing
244s Platform: x86_64-pc-linux-gnu
244s 
244s R is free software and comes with ABSOLUTELY NO WARRANTY.
244s You are welcome to redistribute it under certain conditions.
244s Type 'license()' or 'licence()' for distribution details.
244s 
244s R is a collaborative project with many contributors.
244s Type 'contributors()' for more information and
244s 'citation()' on how to cite R or R packages in publications.
244s 
244s Type 'demo()' for some demos, 'help()' for on-line help, or
244s 'help.start()' for an HTML browser interface to help.
244s Type 'q()' to quit R.
244s 
245s > options("rgdal_show_exportToProj4_warnings"="none")
245s > library(sp)
245s > xy = expand.grid(x = 1:4, y = 1:4)
245s > xy.sp = SpatialPoints(xy)
245s > gridded(xy.sp) = T
245s > # deselect 1 row and 2 col:
245s > tst = xy.sp[-c(2,6,10,14,9,11,12)]
245s > tst
245s Object of class SpatialPixels
245s Grid topology:
245s   cellcentre.offset cellsize cells.dim
245s x                 1        1         4
245s y                 1        1         4
245s SpatialPoints:
245s       x y
245s  [1,] 1 1
245s  [2,] 3 1
245s  [3,] 4 1
245s  [4,] 1 2
245s  [5,] 3 2
245s  [6,] 4 2
245s  [7,] 1 4
245s  [8,] 3 4
245s  [9,] 4 4
245s Coordinate Reference System (CRS) arguments: NA 
245s > # convert to SpatialPixelsDataFrame:
245s > tst = SpatialPixelsDataFrame(tst, data.frame(xx = rnorm(9)))
245s > spplot(tst["xx"], main = "empty row + col")
245s > 
245s BEGIN TEST zerodist.R
245s 
245s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
245s Copyright (C) 2025 The R Foundation for Statistical Computing
245s Platform: x86_64-pc-linux-gnu
245s 
245s R is free software and comes with ABSOLUTELY NO WARRANTY.
245s You are welcome to redistribute it under certain conditions.
245s Type 'license()' or 'licence()' for distribution details.
245s 
245s R is a collaborative project with many contributors.
245s Type 'contributors()' for more information and
245s 'citation()' on how to cite R or R packages in publications.
245s 
245s Type 'demo()' for some demos, 'help()' for on-line help, or
245s 'help.start()' for an HTML browser interface to help.
245s Type 'q()' to quit R.
245s 
245s > options("rgdal_show_exportToProj4_warnings"="none")
245s > library(sp)
245s > data(meuse)
245s > # pick 10 rows
245s > n = 10
245s > set.seed(1357) # fix seed for exact reproduction of test:
245s > ran10 = sample(nrow(meuse), size = n, replace = FALSE)
245s > meusedup = rbind(meuse, meuse[ran10, ])
245s > coordinates(meusedup) = c("x", "y")
245s > zd = zerodist(meusedup)
245s > sum(abs(sort(zd[,1]) - sort(ran10))) # 0!
245s [1] 0
245s > zerodist(meusedup, unique.ID = TRUE)
245s   [1]   1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18
245s  [19]  19  20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36
245s  [37]  37  38  39  40  41  42  43  44  45  46  47  48  49  50  51  52  53  54
245s  [55]  55  56  57  58  59  60  61  62  63  64  65  66  67  68  69  70  71  72
245s  [73]  73  74  75  76  77  78  79  80  81  82  83  84  85  86  87  88  89  90
245s  [91]  91  92  93  94  95  96  97  98  99 100 101 102 103 104 105 106 107 108
245s [109] 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126
245s [127] 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144
245s [145] 145 146 147 148 149 150 151 152 153 154 155 140   9  26   7  90  17 133
245s [163]  82  35 116
245s > # remove the duplicate rows:
245s > meusedup2 = meusedup[-zd[,2], ]
245s > print(summary(meusedup2))
245s Object of class SpatialPointsDataFrame
245s Coordinates:
245s      min    max
245s x 178605 181390
245s y 329714 333611
245s Is projected: NA 
245s proj4string : [NA]
245s Number of points: 155
245s Data attributes:
245s     cadmium           copper            lead            zinc       
245s  Min.   : 0.200   Min.   : 14.00   Min.   : 37.0   Min.   : 113.0  
245s  1st Qu.: 0.800   1st Qu.: 23.00   1st Qu.: 72.5   1st Qu.: 198.0  
245s  Median : 2.100   Median : 31.00   Median :123.0   Median : 326.0  
245s  Mean   : 3.246   Mean   : 40.32   Mean   :153.4   Mean   : 469.7  
245s  3rd Qu.: 3.850   3rd Qu.: 49.50   3rd Qu.:207.0   3rd Qu.: 674.5  
245s  Max.   :18.100   Max.   :128.00   Max.   :654.0   Max.   :1839.0  
245s                                                                    
245s       elev             dist               om         ffreq  soil   lime   
245s  Min.   : 5.180   Min.   :0.00000   Min.   : 1.000   1:84   1:97   0:111  
245s  1st Qu.: 7.546   1st Qu.:0.07569   1st Qu.: 5.300   2:48   2:46   1: 44  
245s  Median : 8.180   Median :0.21184   Median : 6.900   3:23   3:12          
245s  Mean   : 8.165   Mean   :0.24002   Mean   : 7.478                        
245s  3rd Qu.: 8.955   3rd Qu.:0.36407   3rd Qu.: 9.000                        
245s  Max.   :10.520   Max.   :0.88039   Max.   :17.000                        
245s                                     NA's   :2                             
245s     landuse       dist.m      
245s  W      :50   Min.   :  10.0  
245s  Ah     :39   1st Qu.:  80.0  
245s  Am     :22   Median : 270.0  
245s  Fw     :10   Mean   : 290.3  
245s  Ab     : 8   3rd Qu.: 450.0  
245s  (Other):25   Max.   :1000.0  
245s  NA's   : 1                   
245s > meusedup3 <- subset(meusedup, !(1:nrow(meusedup) %in% zd[,2]))
245s > print(summary(meusedup3))
245s Object of class SpatialPointsDataFrame
245s Coordinates:
245s      min    max
245s x 178605 181390
245s y 329714 333611
245s Is projected: NA 
245s proj4string : [NA]
245s Number of points: 155
245s Data attributes:
245s     cadmium           copper            lead            zinc       
245s  Min.   : 0.200   Min.   : 14.00   Min.   : 37.0   Min.   : 113.0  
245s  1st Qu.: 0.800   1st Qu.: 23.00   1st Qu.: 72.5   1st Qu.: 198.0  
245s  Median : 2.100   Median : 31.00   Median :123.0   Median : 326.0  
245s  Mean   : 3.246   Mean   : 40.32   Mean   :153.4   Mean   : 469.7  
245s  3rd Qu.: 3.850   3rd Qu.: 49.50   3rd Qu.:207.0   3rd Qu.: 674.5  
245s  Max.   :18.100   Max.   :128.00   Max.   :654.0   Max.   :1839.0  
245s                                                                    
245s       elev             dist               om         ffreq  soil   lime   
245s  Min.   : 5.180   Min.   :0.00000   Min.   : 1.000   1:84   1:97   0:111  
245s  1st Qu.: 7.546   1st Qu.:0.07569   1st Qu.: 5.300   2:48   2:46   1: 44  
245s  Median : 8.180   Median :0.21184   Median : 6.900   3:23   3:12          
245s  Mean   : 8.165   Mean   :0.24002   Mean   : 7.478                        
245s  3rd Qu.: 8.955   3rd Qu.:0.36407   3rd Qu.: 9.000                        
245s  Max.   :10.520   Max.   :0.88039   Max.   :17.000                        
245s                                     NA's   :2                             
245s     landuse       dist.m      
245s  W      :50   Min.   :  10.0  
245s  Ah     :39   1st Qu.:  80.0  
245s  Am     :22   Median : 270.0  
245s  Fw     :10   Mean   : 290.3  
245s  Ab     : 8   3rd Qu.: 450.0  
245s  (Other):25   Max.   :1000.0  
245s  NA's   : 1                   
245s > dim(meuse)
245s [1] 155  14
245s > dim(meusedup2)
245s [1] 155  12
245s > dim(meusedup3)
245s [1] 155  12
245s > dim(remove.duplicates(meusedup))
245s [1] 155  12
245s > 
245s autopkgtest [03:45:17]: test run-unit-test: -----------------------]
246s run-unit-test        PASS
246s autopkgtest [03:45:18]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
246s autopkgtest [03:45:18]: test pkg-r-autopkgtest: preparing testbed
264s Creating nova instance adt-resolute-amd64-r-cran-sp-20260210-034111-juju-7f2275-prod-proposed-migration-environment-15-a7a4386b-d5c2-41ca-a003-d181bfd81d24 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
346s autopkgtest [03:46:58]: testbed dpkg architecture: amd64
346s autopkgtest [03:46:58]: testbed apt version: 3.1.14
346s autopkgtest [03:46:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup
346s autopkgtest [03:46:58]: testbed release detected to be: resolute
347s autopkgtest [03:46:59]: updating testbed package index (apt update)
347s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
347s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
347s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
347s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
347s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
348s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
348s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
348s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
348s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
348s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
348s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
348s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
348s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
348s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
348s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
348s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
348s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
349s Fetched 5189 kB in 1s (5411 kB/s)
350s Reading package lists...
351s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
351s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
351s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
351s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
352s Reading package lists...
352s Reading package lists...
353s Building dependency tree...
353s Reading state information...
353s Calculating upgrade...
353s The following package was automatically installed and is no longer required:
353s   libpython3.13
353s Use 'sudo apt autoremove' to remove it.
353s The following NEW packages will be installed:
353s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
353s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
353s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
353s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
353s The following packages will be upgraded:
353s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
353s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
353s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
353s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
353s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
353s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
353s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
353s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
353s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
353s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
353s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
353s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
353s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
353s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
353s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
353s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
353s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
353s Need to get 237 MB of archives.
353s After this operation, 339 MB of additional disk space will be used.
353s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
353s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
353s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
353s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
353s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
353s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
353s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
353s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
353s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
353s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
353s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
353s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
353s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
353s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
353s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
353s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
353s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
353s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
353s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
353s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
353s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
353s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
353s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
353s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
353s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
353s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
353s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
353s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
353s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
353s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
353s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
353s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
353s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
353s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
354s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
354s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
354s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
354s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
354s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
354s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
354s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
354s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
354s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
354s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
354s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
354s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
354s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
354s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
354s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
354s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
354s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
354s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
354s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
354s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
354s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
354s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
354s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
354s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
354s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
354s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
354s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
354s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
354s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
354s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
354s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
354s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
354s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
354s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
354s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
354s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
354s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
354s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
354s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
354s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
354s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
354s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
354s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
354s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
354s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
354s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
354s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
354s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
356s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
356s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
356s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
356s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
356s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
356s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
356s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
356s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
357s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
357s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
357s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
357s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
357s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
357s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
357s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
357s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
357s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
357s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
357s dpkg-preconfigure: unable to re-open stdin: No such file or directory
357s Fetched 237 MB in 4s (61.5 MB/s)
358s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
358s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
358s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
358s Setting up debianutils (5.23.2build1) ...
358s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
358s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
358s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
358s Setting up dash (0.5.12-12ubuntu3) ...
358s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
358s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
358s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
358s Setting up findutils (4.10.0-3build2) ...
358s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
358s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
358s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
358s Setting up sed (4.9-2build3) ...
358s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
358s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
358s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
358s Setting up tar (1.35+dfsg-3.1build2) ...
359s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
359s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ...
359s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ...
359s Setting up libattr1:amd64 (1:2.5.2-3build2) ...
359s Selecting previously unselected package gcc-16-base:amd64.
359s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
359s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ...
359s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ...
359s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ...
359s (Reading database ... 
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(Reading database ... 83962 files and directories currently installed.)
359s Preparing to unpack .../libgcc-s1_16-20260208-1ubuntu1_amd64.deb ...
359s Unpacking libgcc-s1:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ...
359s Setting up libgcc-s1:amd64 (16-20260208-1ubuntu1) ...
359s (Reading database ... 
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(Reading database ... 83962 files and directories currently installed.)
359s Preparing to unpack .../00-libbsd0_0.12.2-2build2_amd64.deb ...
359s Unpacking libbsd0:amd64 (0.12.2-2build2) over (0.12.2-2build1) ...
359s Preparing to unpack .../01-mawk_1.3.4.20260129-1_amd64.deb ...
359s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ...
359s Preparing to unpack .../02-libstdc++6_16-20260208-1ubuntu1_amd64.deb ...
359s Unpacking libstdc++6:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ...
359s Preparing to unpack .../03-libapt-pkg7.0_3.1.15_amd64.deb ...
359s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ...
359s Preparing to unpack .../04-apt_3.1.15_amd64.deb ...
359s Unpacking apt (3.1.15) over (3.1.14) ...
360s Preparing to unpack .../05-dbus-system-bus-common_1.16.2-2ubuntu3_all.deb ...
360s Unpacking dbus-system-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../06-dbus-session-bus-common_1.16.2-2ubuntu3_all.deb ...
360s Unpacking dbus-session-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../07-dbus-user-session_1.16.2-2ubuntu3_amd64.deb ...
360s Unpacking dbus-user-session (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../08-dbus-daemon_1.16.2-2ubuntu3_amd64.deb ...
360s Unpacking dbus-daemon (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../09-dbus-bin_1.16.2-2ubuntu3_amd64.deb ...
360s Unpacking dbus-bin (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../10-dbus_1.16.2-2ubuntu3_amd64.deb ...
360s Unpacking dbus (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../11-libdbus-1-3_1.16.2-2ubuntu3_amd64.deb ...
360s Unpacking libdbus-1-3:amd64 (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
360s Preparing to unpack .../12-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ...
360s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
360s Preparing to unpack .../13-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ...
360s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
360s Preparing to unpack .../14-ethtool_1%3a6.15-3build1_amd64.deb ...
360s Unpacking ethtool (1:6.15-3build1) over (1:6.15-3) ...
360s Preparing to unpack .../15-gir1.2-girepository-3.0_2.87.2-2_amd64.deb ...
360s Unpacking gir1.2-girepository-3.0:amd64 (2.87.2-2) over (2.86.3-4) ...
360s Preparing to unpack .../16-libgirepository-2.0-0_2.87.2-2_amd64.deb ...
360s Unpacking libgirepository-2.0-0:amd64 (2.87.2-2) over (2.86.3-4) ...
360s Preparing to unpack .../17-libatomic1_16-20260208-1ubuntu1_amd64.deb ...
360s Unpacking libatomic1:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ...
360s Preparing to unpack .../18-gir1.2-glib-2.0_2.87.2-2_amd64.deb ...
360s Unpacking gir1.2-glib-2.0:amd64 (2.87.2-2) over (2.86.3-4) ...
360s Preparing to unpack .../19-libglib2.0-0t64_2.87.2-2_amd64.deb ...
360s Unpacking libglib2.0-0t64:amd64 (2.87.2-2) over (2.86.3-4) ...
361s Preparing to unpack .../20-libbpf1_1%3a1.6.2-1build1_amd64.deb ...
361s Unpacking libbpf1:amd64 (1:1.6.2-1build1) over (1:1.6.2-1) ...
361s Preparing to unpack .../21-iptables_1.8.11-2ubuntu3_amd64.deb ...
361s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
361s Preparing to unpack .../22-libip4tc2_1.8.11-2ubuntu3_amd64.deb ...
361s Unpacking libip4tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
361s Preparing to unpack .../23-libip6tc2_1.8.11-2ubuntu3_amd64.deb ...
361s Unpacking libip6tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
361s Preparing to unpack .../24-libnetfilter-conntrack3_1.1.1-1_amd64.deb ...
361s Unpacking libnetfilter-conntrack3:amd64 (1.1.1-1) over (1.1.0-1build1) ...
361s Preparing to unpack .../25-libxtables12_1.8.11-2ubuntu3_amd64.deb ...
361s Unpacking libxtables12:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
361s Preparing to unpack .../26-iproute2_6.18.0-1ubuntu1_amd64.deb ...
361s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ...
361s Preparing to unpack .../27-less_668-1build1_amd64.deb ...
361s Unpacking less (668-1build1) over (668-1) ...
361s Preparing to unpack .../28-libcryptsetup12_2%3a2.8.0-1ubuntu3_amd64.deb ...
361s Unpacking libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
361s Preparing to unpack .../29-libglib2.0-data_2.87.2-2_all.deb ...
361s Unpacking libglib2.0-data (2.87.2-2) over (2.86.3-4) ...
361s Preparing to unpack .../30-libidn2-0_2.3.8-4build1_amd64.deb ...
362s Unpacking libidn2-0:amd64 (2.3.8-4build1) over (2.3.8-4) ...
362s Preparing to unpack .../31-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ...
362s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ...
362s Preparing to unpack .../32-python3-linkify-it_2.0.3-1ubuntu3_all.deb ...
362s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ...
362s Preparing to unpack .../33-python3-markdown-it_3.0.0-3build1_all.deb ...
362s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ...
362s Preparing to unpack .../34-shared-mime-info_2.4-5build3_amd64.deb ...
362s Unpacking shared-mime-info (2.4-5build3) over (2.4-5build2) ...
362s Preparing to unpack .../35-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ...
362s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
362s Preparing to unpack .../36-libdrm-common_2.4.131-1_all.deb ...
362s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ...
362s Preparing to unpack .../37-libdrm2_2.4.131-1_amd64.deb ...
362s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ...
362s Preparing to unpack .../38-libgdbm6t64_1.26-1build1_amd64.deb ...
362s Unpacking libgdbm6t64:amd64 (1.26-1build1) over (1.26-1) ...
362s Preparing to unpack .../39-libgpm2_1.20.7-12build1_amd64.deb ...
362s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ...
362s Preparing to unpack .../40-libjansson4_2.14-2build4_amd64.deb ...
362s Unpacking libjansson4:amd64 (2.14-2build4) over (2.14-2build3) ...
362s Preparing to unpack .../41-lsof_4.99.4+dfsg-2build2_amd64.deb ...
362s Unpacking lsof (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ...
362s Preparing to unpack .../42-liblsof0_4.99.4+dfsg-2build2_amd64.deb ...
363s Unpacking liblsof0 (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ...
363s Preparing to unpack .../43-libmaxminddb0_1.12.2-1build2_amd64.deb ...
363s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ...
363s Preparing to unpack .../44-libpcap0.8t64_1.10.5-2ubuntu3_amd64.deb ...
363s Unpacking libpcap0.8t64:amd64 (1.10.5-2ubuntu3) over (1.10.5-2ubuntu2) ...
363s Preparing to unpack .../45-pciutils_1%3a3.14.0-1build2_amd64.deb ...
363s Unpacking pciutils (1:3.14.0-1build2) over (1:3.14.0-1build1) ...
363s Preparing to unpack .../46-libpci3_1%3a3.14.0-1build2_amd64.deb ...
363s Unpacking libpci3:amd64 (1:3.14.0-1build2) over (1:3.14.0-1build1) ...
363s Preparing to unpack .../47-libsensors-config_1%3a3.6.2-2build1_all.deb ...
363s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ...
363s Preparing to unpack .../48-libsensors5_1%3a3.6.2-2build1_amd64.deb ...
363s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ...
363s Preparing to unpack .../49-libusb-1.0-0_2%3a1.0.29-2build1_amd64.deb ...
363s Unpacking libusb-1.0-0:amd64 (2:1.0.29-2build1) over (2:1.0.29-2) ...
363s Preparing to unpack .../50-libxau6_1%3a1.0.11-1build2_amd64.deb ...
363s Unpacking libxau6:amd64 (1:1.0.11-1build2) over (1:1.0.11-1build1) ...
363s Preparing to unpack .../51-libxkbcommon0_1.13.1-1_amd64.deb ...
363s Unpacking libxkbcommon0:amd64 (1.13.1-1) over (1.12.3-1) ...
363s Preparing to unpack .../52-man-db_2.13.1-1build1_amd64.deb ...
363s Unpacking man-db (2.13.1-1build1) over (2.13.1-1) ...
363s Preparing to unpack .../53-tcpdump_4.99.5-2ubuntu3_amd64.deb ...
363s Unpacking tcpdump (4.99.5-2ubuntu3) over (4.99.5-2ubuntu2) ...
363s Preparing to unpack .../54-wget_1.25.0-2ubuntu4_amd64.deb ...
363s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ...
363s Preparing to unpack .../55-ubuntu-standard_1.564_amd64.deb ...
363s Unpacking ubuntu-standard (1.564) over (1.563) ...
363s Preparing to unpack .../56-3cpio_0.14.0-1ubuntu1_amd64.deb ...
363s Unpacking 3cpio (0.14.0-1ubuntu1) over (0.13.1-1ubuntu1) ...
364s Preparing to unpack .../57-bpftool_7.7.0+6.19.0-3.3_amd64.deb ...
364s Unpacking bpftool (7.7.0+6.19.0-3.3) over (7.7.0+6.18.0-9.9) ...
364s Preparing to unpack .../58-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ...
364s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
364s Preparing to unpack .../59-cryptsetup-bin_2%3a2.8.0-1ubuntu3_amd64.deb ...
364s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
364s Preparing to unpack .../60-dracut-install_109-11ubuntu1_amd64.deb ...
364s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ...
364s Preparing to unpack .../61-hwdata_0.394-1build1_all.deb ...
364s Unpacking hwdata (0.394-1build1) over (0.394-1) ...
364s Preparing to unpack .../62-pnp.ids_0.394-1build1_all.deb ...
364s Unpacking pnp.ids (0.394-1build1) over (0.394-1) ...
364s Preparing to unpack .../63-libdrm-amdgpu1_2.4.131-1_amd64.deb ...
364s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ...
364s Preparing to unpack .../64-libevent-core-2.1-7t64_2.1.12-stable-10build2_amd64.deb ...
364s Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) over (2.1.12-stable-10build1) ...
364s Preparing to unpack .../65-libgdbm-compat4t64_1.26-1build1_amd64.deb ...
364s Unpacking libgdbm-compat4t64:amd64 (1.26-1build1) over (1.26-1) ...
364s Preparing to unpack .../66-libgudev-1.0-0_1%3a238-7build1_amd64.deb ...
364s Unpacking libgudev-1.0-0:amd64 (1:238-7build1) over (1:238-7) ...
364s Preparing to unpack .../67-libnpth0t64_1.8-3build1_amd64.deb ...
364s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ...
364s Preparing to unpack .../68-libonig5_6.9.10-1build1_amd64.deb ...
364s Unpacking libonig5:amd64 (6.9.10-1build1) over (6.9.10-1) ...
364s Selecting previously unselected package libpython3.14-minimal:amd64.
364s Preparing to unpack .../69-libpython3.14-minimal_3.14.2-1_amd64.deb ...
364s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ...
364s Selecting previously unselected package libpython3.14-stdlib:amd64.
364s Preparing to unpack .../70-libpython3.14-stdlib_3.14.2-1_amd64.deb ...
364s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ...
364s Selecting previously unselected package libpython3.14:amd64.
364s Preparing to unpack .../71-libpython3.14_3.14.2-1_amd64.deb ...
364s Unpacking libpython3.14:amd64 (3.14.2-1) ...
364s Preparing to unpack .../72-libwrap0_7.6.q-36build2_amd64.deb ...
364s Unpacking libwrap0:amd64 (7.6.q-36build2) over (7.6.q-36build1) ...
364s Selecting previously unselected package linux-modules-6.19.0-3-generic.
364s Preparing to unpack .../73-linux-modules-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
364s Unpacking linux-modules-6.19.0-3-generic (6.19.0-3.3) ...
366s Selecting previously unselected package linux-image-6.19.0-3-generic.
366s Preparing to unpack .../74-linux-image-6.19.0-3-generic_6.19.0-3.3+1_amd64.deb ...
366s Unpacking linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
366s Preparing to unpack .../75-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ...
366s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ...
366s Preparing to unpack .../76-linux-generic_6.19.0-3.3_amd64.deb ...
366s Unpacking linux-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
366s Preparing to unpack .../77-linux-image-generic_6.19.0-3.3_amd64.deb ...
366s Unpacking linux-image-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
366s Preparing to unpack .../78-linux-virtual_6.19.0-3.3_amd64.deb ...
366s Unpacking linux-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
366s Preparing to unpack .../79-linux-image-virtual_6.19.0-3.3_amd64.deb ...
366s Unpacking linux-image-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
366s Preparing to unpack .../80-linux-headers-virtual_6.19.0-3.3_amd64.deb ...
366s Unpacking linux-headers-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
366s Selecting previously unselected package linux-headers-6.19.0-3.
366s Preparing to unpack .../81-linux-headers-6.19.0-3_6.19.0-3.3_all.deb ...
366s Unpacking linux-headers-6.19.0-3 (6.19.0-3.3) ...
369s Selecting previously unselected package linux-headers-6.19.0-3-generic.
369s Preparing to unpack .../82-linux-headers-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
369s Unpacking linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
370s Preparing to unpack .../83-linux-headers-generic_6.19.0-3.3_amd64.deb ...
370s Unpacking linux-headers-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
370s Preparing to unpack .../84-linux-perf_6.19.0-3.3_amd64.deb ...
370s Unpacking linux-perf (6.19.0-3.3) over (6.18.0-9.9) ...
370s Preparing to unpack .../85-linux-tools-common_6.19.0-3.3_all.deb ...
370s Unpacking linux-tools-common (6.19.0-3.3) over (6.18.0-9.9) ...
370s Selecting previously unselected package linux-tools-6.19.0-3.
370s Preparing to unpack .../86-linux-tools-6.19.0-3_6.19.0-3.3_amd64.deb ...
370s Unpacking linux-tools-6.19.0-3 (6.19.0-3.3) ...
370s Selecting previously unselected package linux-tools-6.19.0-3-generic.
370s Preparing to unpack .../87-linux-tools-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
370s Unpacking linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
370s Preparing to unpack .../88-patch_2.8-2build1_amd64.deb ...
370s Unpacking patch (2.8-2build1) over (2.8-2) ...
370s Preparing to unpack .../89-pollinate_4.33-4ubuntu5_all.deb ...
370s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ...
370s Preparing to unpack .../90-python3-referencing_0.36.2-1ubuntu2_all.deb ...
370s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ...
370s Preparing to unpack .../91-ubuntu-kernel-accessories_1.564_amd64.deb ...
370s Unpacking ubuntu-kernel-accessories (1.564) over (1.563) ...
370s Setting up libip4tc2:amd64 (1.8.11-2ubuntu3) ...
370s Setting up 3cpio (0.14.0-1ubuntu1) ...
370s Setting up libxau6:amd64 (1:1.0.11-1build2) ...
370s Setting up libnpth0t64:amd64 (1.8-3build1) ...
370s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ...
371s Setting up ubuntu-kernel-accessories (1.564) ...
371s Setting up libgpm2:amd64 (1.20.7-12build1) ...
371s Setting up libgdbm6t64:amd64 (1.26-1build1) ...
371s Setting up linux-modules-6.19.0-3-generic (6.19.0-3.3) ...
373s Setting up libgdbm-compat4t64:amd64 (1.26-1build1) ...
373s Setting up bpftool (7.7.0+6.19.0-3.3) ...
373s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ...
373s Setting up liblsof0 (4.99.4+dfsg-2build2) ...
373s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ...
373s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ...
373s Setting up libsensors-config (1:3.6.2-2build1) ...
373s Setting up less (668-1build1) ...
373s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
373s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
373s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
373s amd64-microcode: microcode will be updated at next boot
373s Setting up man-db (2.13.1-1build1) ...
373s Updating database of manual pages ...
376s man-db.service is a disabled or a static unit not running, not starting it.
376s Setting up libjansson4:amd64 (2.14-2build4) ...
376s Setting up libglib2.0-data (2.87.2-2) ...
376s Setting up pollinate (4.33-4ubuntu5) ...
387s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
387s Setting up libwrap0:amd64 (7.6.q-36build2) ...
387s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
389s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
389s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
389s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
389s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
389s Setting up patch (2.8-2build1) ...
389s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
389s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
389s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
389s Setting up lsof (4.99.4+dfsg-2build2) ...
389s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
389s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
389s Setting up dracut-install (109-11ubuntu1) ...
389s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
389s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
389s Setting up pnp.ids (0.394-1build1) ...
389s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
389s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
389s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
389s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
389s Setting up mawk (1.3.4.20260129-1) ...
389s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
389s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
389s Setting up linux-image-virtual (6.19.0-3.3) ...
389s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
389s Setting up libbsd0:amd64 (0.12.2-2build2) ...
389s Setting up libdrm-common (2.4.131-1) ...
389s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
389s Setting up dbus-bin (1.16.2-2ubuntu3) ...
389s Setting up libonig5:amd64 (6.9.10-1build1) ...
389s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
389s Setting up ethtool (1:6.15-3build1) ...
389s Setting up python3-referencing (0.36.2-1ubuntu2) ...
390s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
390s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
390s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
390s Setting up tcpdump (4.99.5-2ubuntu3) ...
390s Setting up linux-image-generic (6.19.0-3.3) ...
390s Setting up wget (1.25.0-2ubuntu4) ...
390s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
390s Setting up iptables (1.8.11-2ubuntu3) ...
390s Setting up iproute2 (6.18.0-1ubuntu1) ...
390s Setting up linux-headers-generic (6.19.0-3.3) ...
390s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
390s Setting up hwdata (0.394-1build1) ...
390s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
390s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
390s No schema files found: doing nothing.
390s Setting up dbus (1.16.2-2ubuntu3) ...
390s A reboot is required to replace the running dbus-daemon.
390s Please reboot the system when convenient.
391s Setting up shared-mime-info (2.4-5build3) ...
392s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
392s Setting up pciutils (1:3.14.0-1build2) ...
392s Setting up python3-markdown-it (3.0.0-3build1) ...
392s Setting up libdrm2:amd64 (2.4.131-1) ...
392s Setting up libpython3.14:amd64 (3.14.2-1) ...
392s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
392s Setting up linux-tools-common (6.19.0-3.3) ...
392s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
392s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
392s Setting up apt (3.1.15) ...
393s Setting up linux-headers-virtual (6.19.0-3.3) ...
393s Setting up linux-generic (6.19.0-3.3) ...
393s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
393s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
393s Setting up ubuntu-standard (1.564) ...
393s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
393s Setting up linux-virtual (6.19.0-3.3) ...
393s Setting up linux-perf (6.19.0-3.3) ...
393s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
393s Processing triggers for debianutils (5.23.2build1) ...
393s Processing triggers for install-info (7.2-5) ...
393s Processing triggers for initramfs-tools (0.150ubuntu7) ...
393s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
402s Processing triggers for libc-bin (2.42-2ubuntu4) ...
402s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
402s /etc/kernel/postinst.d/initramfs-tools:
402s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
409s /etc/kernel/postinst.d/zz-update-grub:
409s Sourcing file `/etc/default/grub'
409s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
409s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
409s Generating grub configuration file ...
409s Found linux image: /boot/vmlinuz-6.19.0-3-generic
409s Found initrd image: /boot/initrd.img-6.19.0-3-generic
409s Found linux image: /boot/vmlinuz-6.18.0-9-generic
409s Found initrd image: /boot/initrd.img-6.18.0-9-generic
409s Warning: os-prober will not be executed to detect other bootable partitions.
409s Systems on them will not be added to the GRUB boot configuration.
409s Check GRUB_DISABLE_OS_PROBER documentation entry.
409s Adding boot menu entry for UEFI Firmware Settings ...
409s done
410s autopkgtest [03:48:02]: upgrading testbed (apt dist-upgrade and autopurge)
411s Reading package lists...
411s Building dependency tree...
411s Reading state information...
411s Calculating upgrade...
411s The following package was automatically installed and is no longer required:
411s   libpython3.13
411s Use 'sudo apt autoremove' to remove it.
411s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
412s Reading package lists...
412s Building dependency tree...
412s Reading state information...
412s Solving dependencies...
412s The following packages will be REMOVED:
412s   libpython3.13*
412s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
412s After this operation, 7599 kB disk space will be freed.
412s (Reading database ... 
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(Reading database ... 125273 files and directories currently installed.)
412s Removing libpython3.13:amd64 (3.13.11-1) ...
412s Processing triggers for libc-bin (2.42-2ubuntu4) ...
413s autopkgtest [03:48:05]: rebooting testbed after setup commands that affected boot
453s Reading package lists...
454s Building dependency tree...
454s Reading state information...
454s Solving dependencies...
454s The following NEW packages will be installed:
454s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
454s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
454s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15
454s   g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
454s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran
454s   gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu
454s   icu-devtools javascript-common libabsl20260107 libaec0 libaom3
454s   libarmadillo15 libarpack2t64 libasan8 libavif16 libblas-dev libblas3
454s   libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
454s   libcfitsio10t64 libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate-dev
454s   libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-2 libgcc-15-dev
454s   libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran-15-dev
454s   libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b
454s   libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec
454s   libheif-plugin-libde265 libheif1 libhwasan0 libhwy1t64 libice6 libicu-dev
454s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
454s   libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3
454s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
454s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
454s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
454s   libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64
454s   libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblerc4
454s   liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 libmpc3
454s   libmuparser2v5 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2
454s   libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
454s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0
454s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
454s   libpoppler147 libpq5 libproj25 libqhull-r8.0 libquadmath0 libreadline-dev
454s   librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64
454s   libstdc++-15-dev libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6
454s   libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data
454s   liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2
454s   libxrender1 libxss1 libxt6t64 libyuv0 libzstd-dev linux-libc-dev
454s   mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc
454s   pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core
454s   r-base-dev r-cran-base64enc r-cran-bslib r-cran-cachem r-cran-class
454s   r-cran-classint r-cran-cli r-cran-commonmark r-cran-crayon r-cran-dbi
454s   r-cran-deldir r-cran-digest r-cran-e1071 r-cran-evaluate r-cran-fastmap
454s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
454s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth
454s   r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
454s   r-cran-magrittr r-cran-maps r-cran-mass r-cran-memoise r-cran-mime
454s   r-cran-pkgkitten r-cran-promises r-cran-proxy r-cran-r6 r-cran-rappdirs
454s   r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-rmarkdown
454s   r-cran-s2 r-cran-sass r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp
454s   r-cran-terra r-cran-tinytex r-cran-units r-cran-withr r-cran-wk r-cran-xfun
454s   r-cran-xtable r-cran-yaml rpcsvc-proto unixodbc-common unzip x11-common
454s   xdg-utils zip zlib1g-dev
454s 0 upgraded, 247 newly installed, 0 to remove and 0 not upgraded.
454s Need to get 277 MB of archives.
454s After this operation, 977 MB of additional disk space will be used.
454s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
454s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
455s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
455s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
455s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
455s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
455s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
455s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
455s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
455s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
455s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
455s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
455s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
455s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
455s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
455s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
455s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
456s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
456s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
456s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
456s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
456s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
456s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
456s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
456s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
456s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
456s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
456s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
456s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
456s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
456s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
456s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
456s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
457s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
457s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
457s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
457s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
457s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
457s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
457s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
457s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB]
457s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB]
457s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
457s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
457s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
457s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
457s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
457s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
457s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
457s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
457s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB]
457s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB]
457s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB]
457s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
457s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
457s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB]
457s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB]
457s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB]
457s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB]
457s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB]
457s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
457s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
457s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB]
457s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB]
457s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
457s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB]
457s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB]
457s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
457s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
457s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
457s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
457s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
457s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
457s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB]
458s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
458s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB]
458s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
458s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
458s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB]
458s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB]
458s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB]
458s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB]
458s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB]
458s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB]
458s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
458s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
458s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
458s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
458s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
458s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB]
458s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB]
458s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB]
458s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB]
458s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB]
458s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB]
458s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB]
458s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B]
458s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB]
458s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB]
458s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB]
458s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB]
458s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB]
458s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB]
458s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB]
458s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB]
458s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB]
458s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B]
458s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB]
458s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB]
458s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB]
458s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB]
458s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB]
458s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B]
458s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB]
458s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB]
458s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB]
458s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB]
458s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB]
458s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB]
458s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4build1 [189 kB]
458s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB]
458s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB]
458s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB]
459s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
459s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
459s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
459s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
459s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
459s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
459s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
459s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
459s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
459s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
459s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
459s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
459s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
459s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
459s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
459s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
459s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
459s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
459s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
459s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
459s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
459s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
459s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
459s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
459s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
459s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
459s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
459s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
459s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
459s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
459s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
459s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
459s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
459s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
459s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
459s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
459s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
459s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
459s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
459s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
459s Get:164 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
459s Get:165 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
459s Get:166 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
459s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
459s Get:168 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
459s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB]
459s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB]
459s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
459s Get:172 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
459s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
459s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
459s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
459s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
459s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
460s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
460s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
460s Get:180 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
460s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
461s Get:182 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
461s Get:183 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
461s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
461s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
461s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
461s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
461s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
461s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
461s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
461s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
461s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
461s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
461s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
461s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
461s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
461s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
461s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
461s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
461s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
461s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
461s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
461s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
461s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
461s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
461s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB]
461s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB]
461s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB]
461s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
461s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB]
461s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
461s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
461s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
461s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
461s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
461s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
461s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
461s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
461s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
461s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
461s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
461s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
461s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
461s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
461s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
461s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
461s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
461s Get:228 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
462s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
462s Get:230 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB]
462s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB]
462s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
462s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB]
462s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB]
462s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
462s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
462s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
462s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
462s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
462s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
462s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
462s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
462s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
462s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB]
462s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB]
462s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB]
462s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB]
463s Preconfiguring packages ...
463s Fetched 277 MB in 8s (33.3 MB/s)
463s Selecting previously unselected package libc-dev-bin.
464s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125269 files and directories currently installed.)
464s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
464s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
464s Selecting previously unselected package linux-libc-dev:amd64.
464s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
464s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
464s Selecting previously unselected package libcrypt-dev:amd64.
464s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
464s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
464s Selecting previously unselected package rpcsvc-proto.
464s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
464s Unpacking rpcsvc-proto (1.4.3-1build1) ...
464s Selecting previously unselected package libc6-dev:amd64.
464s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
464s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
464s Selecting previously unselected package libisl23:amd64.
464s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
464s Unpacking libisl23:amd64 (0.27-1build1) ...
464s Selecting previously unselected package libmpc3:amd64.
464s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
464s Unpacking libmpc3:amd64 (1.3.1-2) ...
464s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
464s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
464s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
464s Selecting previously unselected package cpp-15.
464s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
464s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
464s Selecting previously unselected package cpp-x86-64-linux-gnu.
464s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
464s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
464s Selecting previously unselected package cpp.
464s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
464s Unpacking cpp (4:15.2.0-4ubuntu1) ...
464s Selecting previously unselected package libcc1-0:amd64.
464s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
464s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
464s Selecting previously unselected package libgomp1:amd64.
464s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
464s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
464s Selecting previously unselected package libitm1:amd64.
464s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
464s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
464s Selecting previously unselected package libasan8:amd64.
464s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
464s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
464s Selecting previously unselected package liblsan0:amd64.
464s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
464s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
465s Selecting previously unselected package libtsan2:amd64.
465s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
465s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
465s Selecting previously unselected package libubsan1:amd64.
465s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
465s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
465s Selecting previously unselected package libhwasan0:amd64.
465s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
465s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
465s Selecting previously unselected package libquadmath0:amd64.
465s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
465s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
465s Selecting previously unselected package libgcc-15-dev:amd64.
465s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
465s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
465s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
465s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
465s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
465s Selecting previously unselected package gcc-15.
465s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
465s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
465s Selecting previously unselected package gcc-x86-64-linux-gnu.
465s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
465s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
465s Selecting previously unselected package gcc.
465s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
465s Unpacking gcc (4:15.2.0-4ubuntu1) ...
465s Selecting previously unselected package libstdc++-15-dev:amd64.
465s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
465s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
466s Selecting previously unselected package g++-15-x86-64-linux-gnu.
466s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
466s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
466s Selecting previously unselected package g++-15.
466s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
466s Unpacking g++-15 (15.2.0-12ubuntu1) ...
466s Selecting previously unselected package g++-x86-64-linux-gnu.
466s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
466s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
466s Selecting previously unselected package g++.
466s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
466s Unpacking g++ (4:15.2.0-4ubuntu1) ...
466s Selecting previously unselected package build-essential.
466s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
466s Unpacking build-essential (12.12ubuntu2) ...
466s Selecting previously unselected package dctrl-tools.
466s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
466s Unpacking dctrl-tools (2.24-3build4) ...
466s Selecting previously unselected package fonts-dejavu-mono.
466s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
466s Unpacking fonts-dejavu-mono (2.37-8build1) ...
466s Selecting previously unselected package fonts-dejavu-core.
466s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
466s Unpacking fonts-dejavu-core (2.37-8build1) ...
466s Selecting previously unselected package fontconfig-config.
466s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
466s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
466s Selecting previously unselected package libfontconfig1:amd64.
466s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
466s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
466s Selecting previously unselected package fontconfig.
466s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
466s Unpacking fontconfig (2.17.1-3ubuntu1) ...
466s Selecting previously unselected package fonts-font-awesome.
466s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
466s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
466s Selecting previously unselected package fonts-glyphicons-halflings.
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466s Selecting previously unselected package gdal-data.
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467s Selecting previously unselected package gdal-plugins:amd64.
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467s Selecting previously unselected package libgfortran5:amd64.
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467s Selecting previously unselected package libgfortran-15-dev:amd64.
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467s Selecting previously unselected package icu-devtools.
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467s Selecting previously unselected package javascript-common.
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467s Selecting previously unselected package libabsl20260107:amd64.
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467s Selecting previously unselected package libblas3:amd64.
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467s Selecting previously unselected package liblapack3:amd64.
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467s Selecting previously unselected package libsuperlu7:amd64.
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467s Selecting previously unselected package libarmadillo15.
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467s Selecting previously unselected package libdav1d7:amd64.
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467s Selecting previously unselected package libgav1-2:amd64.
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467s Selecting previously unselected package libjpeg-turbo8:amd64.
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467s Selecting previously unselected package libyuv0:amd64.
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467s Selecting previously unselected package libblas-dev:amd64.
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468s Selecting previously unselected package libsnappy1v5:amd64.
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468s Selecting previously unselected package libxcb-render0:amd64.
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468s Selecting previously unselected package libxrender1:amd64.
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468s Selecting previously unselected package libcairo2:amd64.
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468s Selecting previously unselected package libcfitsio10t64:amd64.
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468s Selecting previously unselected package libdatrie1:amd64.
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468s Selecting previously unselected package libde265-0:amd64.
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468s Selecting previously unselected package libdeflate0:amd64.
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468s Selecting previously unselected package libdeflate-dev:amd64.
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468s Selecting previously unselected package libfyba0t64:amd64.
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468s Selecting previously unselected package libminizip1t64:amd64.
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468s Selecting previously unselected package libfreexl1:amd64.
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468s Selecting previously unselected package libgeos3.14.1:amd64.
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468s Selecting previously unselected package proj-data.
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468s Selecting previously unselected package libjbig0:amd64.
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468s Selecting previously unselected package liblerc4:amd64.
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468s Selecting previously unselected package libsharpyuv0:amd64.
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468s Selecting previously unselected package libwebp7:amd64.
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468s Selecting previously unselected package libtiff6:amd64.
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468s Selecting previously unselected package libproj25:amd64.
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468s Selecting previously unselected package libgeotiff5:amd64.
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468s Selecting previously unselected package libgif7:amd64.
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468s Selecting previously unselected package libsz2:amd64.
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468s Selecting previously unselected package libhdf4-0:amd64.
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469s Selecting previously unselected package libheif-plugin-aomdec:amd64.
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469s Selecting previously unselected package libjxl0.11:amd64.
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469s Selecting previously unselected package libkmlbase1t64:amd64.
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469s Selecting previously unselected package libmuparser2v5:amd64.
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469s Selecting previously unselected package mysql-common.
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469s Selecting previously unselected package libmysqlclient24:amd64.
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469s Selecting previously unselected package libhdf5-hl-310:amd64.
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469s Selecting previously unselected package libodbc2:amd64.
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469s Selecting previously unselected package unixodbc-common.
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469s Selecting previously unselected package libodbcinst2:amd64.
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469s Selecting previously unselected package libopenjp2-7:amd64.
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469s Selecting previously unselected package libspatialite8t64:amd64.
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469s Selecting previously unselected package libxerces-c3.2t64:amd64.
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470s Selecting previously unselected package libgdal38:amd64.
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470s Selecting previously unselected package libgraphite2-3:amd64.
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470s Selecting previously unselected package libharfbuzz0b:amd64.
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470s Selecting previously unselected package x11-common.
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470s Selecting previously unselected package libice6:amd64.
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470s Selecting previously unselected package libicu-dev:amd64.
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470s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
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470s Selecting previously unselected package libjpeg8-dev:amd64.
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470s Selecting previously unselected package libjpeg-dev:amd64.
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470s Selecting previously unselected package libjs-bootstrap.
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470s Selecting previously unselected package libjs-popper.js.
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470s Selecting previously unselected package libjs-d3.
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470s Selecting previously unselected package libjs-es5-shim.
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470s Selecting previously unselected package libjs-jquery.
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471s Selecting previously unselected package libjs-jquery-datatables.
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473s Selecting previously unselected package r-cran-base64enc.
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473s Selecting previously unselected package r-cran-htmltools.
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475s Selecting previously unselected package r-cran-tinytex.
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475s Selecting previously unselected package libjs-modernizr.
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475s Selecting previously unselected package r-cran-xtable.
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476s Selecting previously unselected package r-cran-sourcetools.
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476s Selecting previously unselected package r-cran-withr.
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476s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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476s Selecting previously unselected package r-cran-shiny.
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476s Selecting previously unselected package r-cran-rmarkdown.
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476s Selecting previously unselected package r-cran-wk.
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479s Setting up gcc (4:15.2.0-4ubuntu1) ...
479s Setting up r-base-core (4.5.2-1ubuntu2) ...
479s Creating config file /etc/R/Renviron with new version
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479s Setting up r-cran-lattice (0.22-9-1) ...
479s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
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479s Setting up r-cran-commonmark (1.9.5-1) ...
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479s Setting up r-cran-rappdirs (0.3.3-1build1) ...
479s Setting up r-cran-littler (0.3.22-1) ...
479s Setting up r-cran-fs (1.6.5+dfsg-1) ...
479s Setting up r-cran-rcpp (1.1.0-1) ...
479s Setting up r-cran-maps (3.4.2.1-1) ...
479s Setting up r-cran-rlang (1.1.5-3) ...
479s Setting up r-cran-xfun (0.55+dfsg-1) ...
479s Setting up r-cran-withr (3.0.2+dfsg-1) ...
479s Setting up r-cran-mime (0.12-2) ...
479s Setting up r-cran-base64enc (0.1-3-3build1) ...
479s Setting up r-cran-s2 (1.1.9-1build1) ...
479s Setting up r-cran-digest (0.6.39-1) ...
479s Setting up r-cran-yaml (2.3.10-1) ...
479s Setting up r-cran-evaluate (1.0.5-1) ...
479s Setting up r-cran-dbi (1.2.3-1build1) ...
479s Setting up r-cran-highr (0.11+dfsg-1) ...
479s Setting up r-cran-mass (7.3-65-1) ...
479s Setting up r-cran-glue (1.8.0-1) ...
479s Setting up r-cran-xtable (1:1.8-4-2build1) ...
479s Setting up r-cran-cli (3.6.4-1) ...
479s Setting up gfortran (4:15.2.0-4ubuntu1) ...
479s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
479s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
479s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
479s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
479s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
479s Setting up r-cran-deldir (2.0-4-1build1) ...
479s Setting up r-cran-fastmap (1.2.0-1) ...
479s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
479s Setting up r-cran-sp (1:2.2-0+dfsg-1) ...
479s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
479s Setting up r-cran-units (0.8-7+dfsg-2) ...
479s Setting up r-cran-later (1.4.1+dfsg-1) ...
479s Setting up r-cran-htmltools (0.5.8.1-1) ...
479s Setting up r-cran-tinytex (0.58-1) ...
479s Setting up r-cran-kernsmooth (2.23-26-1build1) ...
479s Setting up r-cran-knitr (1.51+dfsg-1) ...
479s Setting up g++ (4:15.2.0-4ubuntu1) ...
479s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
479s Setting up r-cran-cachem (1.1.0-1) ...
479s Setting up r-cran-sass (0.4.9+dfsg-1) ...
479s Setting up build-essential (12.12ubuntu2) ...
479s Setting up r-base-dev (4.5.2-1ubuntu2) ...
479s Setting up r-cran-class (7.3-23-1) ...
479s Setting up r-cran-fontawesome (0.5.3-1) ...
479s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
479s Setting up r-cran-memoise (2.0.1-1build1) ...
479s Setting up r-cran-promises (1.3.2+dfsg-1) ...
479s Setting up r-cran-e1071 (1.7-17-1) ...
479s Setting up pkg-r-autopkgtest (20250812) ...
479s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
479s Setting up r-cran-classint (0.4-11+dfsg-1) ...
479s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
479s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
479s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
479s Setting up libheif1:amd64 (1.21.2-1) ...
479s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ...
479s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ...
479s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ...
479s Setting up r-cran-terra (1.8-70-1build2) ...
479s Setting up r-cran-sf (1.0-19+dfsg-2build2) ...
479s Setting up r-cran-raster (3.6-31-2) ...
479s Processing triggers for install-info (7.2-5) ...
480s Processing triggers for libc-bin (2.42-2ubuntu4) ...
480s Processing triggers for man-db (2.13.1-1build1) ...
483s autopkgtest [03:49:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
483s autopkgtest [03:49:15]: test pkg-r-autopkgtest: [-----------------------
484s Test: Try to load the R library sp
484s 
484s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
484s Copyright (C) 2025 The R Foundation for Statistical Computing
484s Platform: x86_64-pc-linux-gnu
484s 
484s R is free software and comes with ABSOLUTELY NO WARRANTY.
484s You are welcome to redistribute it under certain conditions.
484s Type 'license()' or 'licence()' for distribution details.
484s 
484s R is a collaborative project with many contributors.
484s Type 'contributors()' for more information and
484s 'citation()' on how to cite R or R packages in publications.
484s 
484s Type 'demo()' for some demos, 'help()' for on-line help, or
484s 'help.start()' for an HTML browser interface to help.
484s Type 'q()' to quit R.
484s 
484s > library('sp')
484s > 
484s autopkgtest [03:49:16]: test pkg-r-autopkgtest: -----------------------]
485s pkg-r-autopkgtest    PASS
485s autopkgtest [03:49:17]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
485s autopkgtest [03:49:17]: @@@@@@@@@@@@@@@@@@@@ summary
485s run-unit-test        PASS
485s pkg-r-autopkgtest    PASS