0s autopkgtest [05:52:39]: starting date and time: 2026-02-10 05:52:39+0000
  0s autopkgtest [05:52:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [05:52:39]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5i_4w6sn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-shazam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-10.secgroup --name adt-resolute-amd64-r-cran-shazam-20260210-055239-juju-7f2275-prod-proposed-migration-environment-15-fed5e7d6-4b4e-4209-b717-8b7201aad493 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-cran-shazam-20260210-055239-juju-7f2275-prod-proposed-migration-environment-15-fed5e7d6-4b4e-4209-b717-8b7201aad493 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 73s autopkgtest [05:53:52]: testbed dpkg architecture: amd64
 73s autopkgtest [05:53:52]: testbed apt version: 3.1.14
 74s autopkgtest [05:53:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 74s autopkgtest [05:53:53]: testbed release detected to be: None
 74s autopkgtest [05:53:53]: updating testbed package index (apt update)
 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1727 kB]
 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [178 kB]
 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB]
 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [219 kB]
 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6184 B]
 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [792 kB]
 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1787 kB]
 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.5 kB]
 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 76s Fetched 5197 kB in 1s (6995 kB/s)
 76s Reading package lists...
 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 78s Reading package lists...
 78s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 78s Calculating upgrade...
 78s The following package was automatically installed and is no longer required:
 78s   libpython3.13
 78s Use 'sudo apt autoremove' to remove it.
 78s The following NEW packages will be installed:
 78s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 78s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 78s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 78s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 78s The following packages will be upgraded:
 78s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 78s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 78s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 78s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 78s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbrotli1 libbsd0
 78s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 78s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 78s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 78s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 78s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 78s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 78s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 78s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 78s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 78s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 78s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 78s 91 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 237 MB of archives.
 78s After this operation, 339 MB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 80s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 80s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 80s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 80s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 80s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 80s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 80s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 80s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 80s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 80s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 80s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 80s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 80s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 80s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 80s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 80s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 80s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 80s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 80s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 80s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 80s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 80s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 80s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 80s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 80s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 80s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 80s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 80s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 80s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 80s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 80s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 80s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 80s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 80s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 80s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 80s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 80s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 80s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 80s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 80s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 80s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 80s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 80s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 80s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 80s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 80s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 80s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 80s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 81s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 81s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 81s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 81s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 81s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 81s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 81s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 81s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 81s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 81s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 81s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.2.0-3 [343 kB]
 81s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 81s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 81s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 81s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 81s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 81s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 81s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 82s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 82s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 83s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 83s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 86s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 86s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 86s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 86s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 86s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 86s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 86s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 86s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 86s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 86s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 86s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 86s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 87s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 87s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 87s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 87s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 87s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 87s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 87s Fetched 237 MB in 8s (28.3 MB/s)
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 87s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 87s Setting up debianutils (5.23.2build1) ...
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 87s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 87s Setting up dash (0.5.12-12ubuntu3) ...
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 87s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 87s Setting up findutils (4.10.0-3build2) ...
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 87s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 87s Setting up sed (4.9-2build3) ...
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 87s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 87s Setting up tar (1.35+dfsg-3.1build2) ...
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 95s Setting up less (668-1build1) ...
 95s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
 95s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
 95s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 95s amd64-microcode: microcode will be updated at next boot
 95s Setting up man-db (2.13.1-1build1) ...
 95s Updating database of manual pages ...
 97s man-db.service is a disabled or a static unit not running, not starting it.
 97s Setting up libjansson4:amd64 (2.14-2build4) ...
 97s Setting up libglib2.0-data (2.87.2-2) ...
 97s Setting up pollinate (4.33-4ubuntu5) ...
107s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
107s Setting up libwrap0:amd64 (7.6.q-36build2) ...
107s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
108s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
108s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
108s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
108s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
108s Setting up patch (2.8-2build1) ...
108s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
108s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
108s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
108s Setting up lsof (4.99.4+dfsg-2build2) ...
108s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
108s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
108s Setting up dracut-install (109-11ubuntu1) ...
108s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
108s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
108s Setting up pnp.ids (0.394-1build1) ...
108s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
108s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
108s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
108s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
108s Setting up mawk (1.3.4.20260129-1) ...
108s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
108s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
108s Setting up linux-image-virtual (6.19.0-3.3) ...
108s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
108s Setting up libbsd0:amd64 (0.12.2-2build2) ...
108s Setting up libdrm-common (2.4.131-1) ...
108s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
108s Setting up dbus-bin (1.16.2-2ubuntu3) ...
108s Setting up libonig5:amd64 (6.9.10-1build1) ...
108s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
108s Setting up ethtool (1:6.15-3build1) ...
108s Setting up python3-referencing (0.36.2-1ubuntu2) ...
108s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
108s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
108s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
108s Setting up tcpdump (4.99.5-2ubuntu3) ...
108s Setting up linux-image-generic (6.19.0-3.3) ...
109s Setting up wget (1.25.0-2ubuntu4) ...
109s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
109s Setting up iptables (1.8.11-2ubuntu3) ...
109s Setting up iproute2 (6.18.0-1ubuntu1) ...
109s Setting up linux-headers-generic (6.19.0-3.3) ...
109s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
109s Setting up hwdata (0.394-1build1) ...
109s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
109s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
109s No schema files found: doing nothing.
109s Setting up dbus (1.16.2-2ubuntu3) ...
109s A reboot is required to replace the running dbus-daemon.
109s Please reboot the system when convenient.
109s Setting up shared-mime-info (2.4-5build3) ...
110s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
110s Setting up pciutils (1:3.14.0-1build2) ...
110s Setting up python3-markdown-it (3.0.0-3build1) ...
110s Setting up libdrm2:amd64 (2.4.131-1) ...
110s Setting up libpython3.14:amd64 (3.14.2-1) ...
110s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
110s Setting up linux-tools-common (6.19.0-3.3) ...
110s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
110s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
110s Setting up apt (3.1.15) ...
110s Setting up linux-headers-virtual (6.19.0-3.3) ...
110s Setting up linux-generic (6.19.0-3.3) ...
110s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
110s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
110s Setting up ubuntu-standard (1.564) ...
110s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
110s Setting up linux-virtual (6.19.0-3.3) ...
110s Setting up linux-perf (6.19.0-3.3) ...
110s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
110s Processing triggers for debianutils (5.23.2build1) ...
110s Processing triggers for install-info (7.2-5) ...
110s Processing triggers for initramfs-tools (0.150ubuntu7) ...
110s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
115s Processing triggers for libc-bin (2.42-2ubuntu4) ...
115s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
115s /etc/kernel/postinst.d/initramfs-tools:
115s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
119s /etc/kernel/postinst.d/zz-update-grub:
119s Sourcing file `/etc/default/grub'
119s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
119s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
119s Generating grub configuration file ...
119s Found linux image: /boot/vmlinuz-6.19.0-3-generic
119s Found initrd image: /boot/initrd.img-6.19.0-3-generic
119s Found linux image: /boot/vmlinuz-6.18.0-9-generic
119s Found initrd image: /boot/initrd.img-6.18.0-9-generic
119s Warning: os-prober will not be executed to detect other bootable partitions.
119s Systems on them will not be added to the GRUB boot configuration.
119s Check GRUB_DISABLE_OS_PROBER documentation entry.
119s Adding boot menu entry for UEFI Firmware Settings ...
119s done
119s autopkgtest [05:54:38]: upgrading testbed (apt dist-upgrade and autopurge)
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s Calculating upgrade...
120s The following package was automatically installed and is no longer required:
120s   libpython3.13
120s Use 'sudo apt autoremove' to remove it.
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s Solving dependencies...
121s The following packages will be REMOVED:
121s   libpython3.13*
121s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
121s After this operation, 7599 kB disk space will be freed.
121s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
121s Removing libpython3.13:amd64 (3.13.11-1) ...
121s Processing triggers for libc-bin (2.42-2ubuntu4) ...
121s autopkgtest [05:54:40]: rebooting testbed after setup commands that affected boot
150s autopkgtest [05:55:09]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
152s autopkgtest [05:55:11]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-shazam
153s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-shazam 1.2.0-1 (dsc) [2383 B]
153s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-shazam 1.2.0-1 (tar) [1751 kB]
153s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-shazam 1.2.0-1 (diff) [8748 B]
153s gpgv: Signature made Tue Oct 17 12:32:54 2023 UTC
153s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
153s gpgv:                issuer "tille@debian.org"
153s gpgv: Can't check signature: No public key
153s dpkg-source: warning: cannot verify inline signature for ./r-cran-shazam_1.2.0-1.dsc: no acceptable signature found
153s autopkgtest [05:55:12]: testing package r-cran-shazam version 1.2.0-1
154s autopkgtest [05:55:13]: build not needed
156s autopkgtest [05:55:15]: test pkg-r-autopkgtest: preparing testbed
156s Reading package lists...
156s Building dependency tree...
156s Reading state information...
156s Solving dependencies...
156s The following NEW packages will be installed:
156s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
156s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
156s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15
156s   g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
156s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
156s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
156s   javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev
156s   libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
156s   libcolamd3 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
156s   libgcc-15-dev libgfortran-15-dev libgfortran5 libglpk40 libgomp1
156s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
156s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
156s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
156s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
156s   libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js
156s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
156s   libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4
156s   liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev
156s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
156s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
156s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
156s   libsharpyuv0 libsm6 libstdc++-15-dev libsuitesparseconfig7 libtcl8.6
156s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1
156s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
156s   libzstd-dev linux-libc-dev node-bootstrap-sass node-html5shiv
156s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
156s   r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
156s   r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
156s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
156s   r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib
156s   r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
156s   r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
156s   r-cran-abind r-cran-ade4 r-cran-airr r-cran-alakazam r-cran-ape
156s   r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
156s   r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli
156s   r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon
156s   r-cran-curl r-cran-desc r-cran-diffobj r-cran-digest r-cran-diptest
156s   r-cran-doparallel r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver
156s   r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs
156s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
156s   r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools
156s   r-cran-httpuv r-cran-httr r-cran-igraph r-cran-isoband r-cran-iterators
156s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr
156s   r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval
156s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
156s   r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-nlme r-cran-openssl
156s   r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig
156s   r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-prettyunits
156s   r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr
156s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
156s   r-cran-rcpparmadillo r-cran-readr r-cran-rlang r-cran-rmarkdown
156s   r-cran-rprojroot r-cran-s7 r-cran-sass r-cran-scales r-cran-segmented
156s   r-cran-seqinr r-cran-shazam r-cran-shiny r-cran-snow r-cran-sourcetools
156s   r-cran-sp r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat
156s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb
156s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo
156s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto unzip
156s   x11-common xdg-utils zip zlib1g-dev
156s 0 upgraded, 278 newly installed, 0 to remove and 0 not upgraded.
156s Need to get 346 MB of archives.
156s After this operation, 1159 MB of additional disk space will be used.
156s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
156s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
157s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
157s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
157s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
157s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
157s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
157s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
157s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
157s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
157s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
157s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
157s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
157s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
157s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
157s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
157s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
157s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
157s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
157s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
157s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
157s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
158s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
158s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
158s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
158s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
158s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
158s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
158s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
158s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
158s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
158s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
158s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
158s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
158s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
158s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
158s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
159s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
159s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
159s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
159s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
159s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
159s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
159s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
159s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
159s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
159s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
159s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
159s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB]
159s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB]
159s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
159s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
159s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
159s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
159s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
159s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
159s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
159s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
159s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
159s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
160s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB]
160s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
160s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
160s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
160s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB]
160s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB]
160s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
160s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
160s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
160s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
160s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
160s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
160s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
160s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
160s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
160s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
160s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
160s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
160s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
160s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
160s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
160s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
160s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
160s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
160s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
160s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
160s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
160s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
160s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
160s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
160s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
160s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
160s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
160s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
160s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
160s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
160s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
160s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
160s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
160s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
160s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
160s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
160s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
160s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
160s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
160s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
160s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
160s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
160s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
160s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
160s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
160s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
160s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
160s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
160s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
160s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
160s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
160s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
160s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
160s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
160s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
160s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
160s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
160s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
160s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
160s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
161s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
161s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
161s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
161s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
161s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
161s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
161s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
161s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
161s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
161s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
161s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
161s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
161s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
161s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
161s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
161s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
161s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
161s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
161s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
161s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
161s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
161s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
161s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
161s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
161s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
161s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
161s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
161s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
161s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
161s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
161s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
161s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
161s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
161s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
161s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
162s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
162s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
162s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
162s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
162s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
162s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
162s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
162s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
162s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
162s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB]
162s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
162s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
162s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
162s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
162s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB]
163s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB]
163s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB]
163s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
163s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pixmap all 0.4-14-1 [217 kB]
163s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
163s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
163s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
163s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
163s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
163s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ade4 amd64 1.7-23-1 [5414 kB]
163s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
163s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clipr all 0.8.0-1build1 [54.0 kB]
163s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
163s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
163s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
163s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
163s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
163s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB]
163s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
163s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
163s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
163s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
163s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
163s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
163s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB]
163s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
163s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
163s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tzdb amd64 0.5.0-1 [538 kB]
163s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
163s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
163s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vroom amd64 1.7.0-1 [910 kB]
163s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-readr amd64 2.1.6-1 [818 kB]
163s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
163s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
163s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-airr all 1.5.0+dfsg-1 [329 kB]
163s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
163s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
163s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
163s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
163s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
163s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
163s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
163s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
164s Get:220 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
164s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
164s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
164s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ape amd64 5.8-1-1 [2918 kB]
164s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
164s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
164s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-igraph amd64 2.1.4-1build1 [5218 kB]
164s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-segmented all 2.1-4-1 [1376 kB]
164s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-seqinr amd64 4.2-36-1 [4015 kB]
164s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB]
164s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
164s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
164s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-alakazam amd64 1.3.0-1 [2410 kB]
164s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
164s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
164s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
164s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
164s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
164s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
164s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
164s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
164s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
164s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
164s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
164s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
164s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
164s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
164s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
164s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
164s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
164s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diptest amd64 0.77-1-1 [182 kB]
164s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-iterators all 1.0.14-1build1 [336 kB]
164s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreach all 1.5.2-1build1 [124 kB]
164s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-doparallel all 1.0.17-1build1 [189 kB]
164s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
165s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
165s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
165s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
165s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
165s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
165s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
165s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
165s Get:262 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
165s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
165s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB]
165s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
165s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
165s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
165s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
165s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
165s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
165s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
165s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
165s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
165s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
165s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
165s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shazam all 1.2.0-1 [2184 kB]
165s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
165s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
166s Preconfiguring packages ...
166s Fetched 346 MB in 9s (37.2 MB/s)
166s Selecting previously unselected package libc-dev-bin.
166s (Reading database ... 
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166s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
166s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
166s Selecting previously unselected package linux-libc-dev:amd64.
166s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
166s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
166s Selecting previously unselected package libcrypt-dev:amd64.
166s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
166s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
166s Selecting previously unselected package rpcsvc-proto.
166s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
166s Unpacking rpcsvc-proto (1.4.3-1build1) ...
166s Selecting previously unselected package libc6-dev:amd64.
166s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
166s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
166s Selecting previously unselected package libisl23:amd64.
166s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
166s Unpacking libisl23:amd64 (0.27-1build1) ...
166s Selecting previously unselected package libmpc3:amd64.
166s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
166s Unpacking libmpc3:amd64 (1.3.1-2) ...
166s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
166s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
166s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
166s Selecting previously unselected package cpp-15.
166s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
166s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
166s Selecting previously unselected package cpp-x86-64-linux-gnu.
166s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
166s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
166s Selecting previously unselected package cpp.
166s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
166s Unpacking cpp (4:15.2.0-4ubuntu1) ...
166s Selecting previously unselected package libcc1-0:amd64.
166s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
166s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
166s Selecting previously unselected package libgomp1:amd64.
166s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
166s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
166s Selecting previously unselected package libitm1:amd64.
166s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
166s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
166s Selecting previously unselected package libasan8:amd64.
166s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
166s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
167s Selecting previously unselected package liblsan0:amd64.
167s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
167s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
167s Selecting previously unselected package libtsan2:amd64.
167s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
167s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
167s Selecting previously unselected package libubsan1:amd64.
167s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
167s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
167s Selecting previously unselected package libhwasan0:amd64.
167s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
167s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
167s Selecting previously unselected package libquadmath0:amd64.
167s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
167s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
167s Selecting previously unselected package libgcc-15-dev:amd64.
167s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
167s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
167s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
167s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
167s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
167s Selecting previously unselected package gcc-15.
167s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
167s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
167s Selecting previously unselected package gcc-x86-64-linux-gnu.
167s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
167s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
167s Selecting previously unselected package gcc.
167s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
167s Unpacking gcc (4:15.2.0-4ubuntu1) ...
167s Selecting previously unselected package libstdc++-15-dev:amd64.
167s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
167s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
167s Selecting previously unselected package g++-15-x86-64-linux-gnu.
167s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
167s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
167s Selecting previously unselected package g++-15.
167s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
167s Unpacking g++-15 (15.2.0-12ubuntu1) ...
167s Selecting previously unselected package g++-x86-64-linux-gnu.
167s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
167s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
167s Selecting previously unselected package g++.
167s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
167s Unpacking g++ (4:15.2.0-4ubuntu1) ...
167s Selecting previously unselected package build-essential.
167s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
167s Unpacking build-essential (12.12ubuntu2) ...
167s Selecting previously unselected package dctrl-tools.
167s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
167s Unpacking dctrl-tools (2.24-3build4) ...
167s Selecting previously unselected package fonts-dejavu-mono.
167s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
167s Unpacking fonts-dejavu-mono (2.37-8build1) ...
167s Selecting previously unselected package fonts-dejavu-core.
167s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
167s Unpacking fonts-dejavu-core (2.37-8build1) ...
167s Selecting previously unselected package fontconfig-config.
167s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
168s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
168s Selecting previously unselected package libfontconfig1:amd64.
168s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
168s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
168s Selecting previously unselected package fontconfig.
168s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
168s Unpacking fontconfig (2.17.1-3ubuntu1) ...
168s Selecting previously unselected package fonts-font-awesome.
168s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
168s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
168s Selecting previously unselected package fonts-glyphicons-halflings.
168s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
168s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
168s Selecting previously unselected package fonts-mathjax.
168s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
168s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
168s Selecting previously unselected package libgfortran5:amd64.
168s Preparing to unpack .../040-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
168s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
168s Selecting previously unselected package libgfortran-15-dev:amd64.
168s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
168s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
168s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
168s Preparing to unpack .../042-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
168s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
168s Selecting previously unselected package gfortran-15.
168s Preparing to unpack .../043-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
168s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
168s Selecting previously unselected package gfortran-x86-64-linux-gnu.
168s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
168s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
168s Selecting previously unselected package gfortran.
168s Preparing to unpack .../045-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
168s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
168s Selecting previously unselected package icu-devtools.
168s Preparing to unpack .../046-icu-devtools_78.2-1ubuntu1_amd64.deb ...
168s Unpacking icu-devtools (78.2-1ubuntu1) ...
168s Selecting previously unselected package javascript-common.
168s Preparing to unpack .../047-javascript-common_12+nmu1build1_all.deb ...
168s Unpacking javascript-common (12+nmu1build1) ...
168s Selecting previously unselected package libsuitesparseconfig7:amd64.
168s Preparing to unpack .../048-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_amd64.deb ...
168s Unpacking libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ...
168s Selecting previously unselected package libamd3:amd64.
168s Preparing to unpack .../049-libamd3_1%3a7.12.1+dfsg-1_amd64.deb ...
168s Unpacking libamd3:amd64 (1:7.12.1+dfsg-1) ...
168s Selecting previously unselected package libblas3:amd64.
168s Preparing to unpack .../050-libblas3_3.12.1-7ubuntu1_amd64.deb ...
168s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
168s Selecting previously unselected package libblas-dev:amd64.
168s Preparing to unpack .../051-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
168s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
168s Selecting previously unselected package libboost1.90-dev:amd64.
168s Preparing to unpack .../052-libboost1.90-dev_1.90.0-2ubuntu1_amd64.deb ...
168s Unpacking libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ...
169s Selecting previously unselected package libboost-dev:amd64.
169s Preparing to unpack .../053-libboost-dev_1.90.0.0ubuntu3_amd64.deb ...
169s Unpacking libboost-dev:amd64 (1.90.0.0ubuntu3) ...
169s Selecting previously unselected package libbz2-dev:amd64.
169s Preparing to unpack .../054-libbz2-dev_1.0.8-6build2_amd64.deb ...
169s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
169s Selecting previously unselected package libpixman-1-0:amd64.
169s Preparing to unpack .../055-libpixman-1-0_0.46.4-1_amd64.deb ...
169s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
169s Selecting previously unselected package libxcb-render0:amd64.
169s Preparing to unpack .../056-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
169s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
169s Selecting previously unselected package libxcb-shm0:amd64.
169s Preparing to unpack .../057-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
169s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
169s Selecting previously unselected package libxrender1:amd64.
169s Preparing to unpack .../058-libxrender1_1%3a0.9.12-1_amd64.deb ...
169s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
169s Selecting previously unselected package libcairo2:amd64.
169s Preparing to unpack .../059-libcairo2_1.18.4-3_amd64.deb ...
169s Unpacking libcairo2:amd64 (1.18.4-3) ...
169s Selecting previously unselected package libcolamd3:amd64.
169s Preparing to unpack .../060-libcolamd3_1%3a7.12.1+dfsg-1_amd64.deb ...
169s Unpacking libcolamd3:amd64 (1:7.12.1+dfsg-1) ...
169s Selecting previously unselected package libdatrie1:amd64.
169s Preparing to unpack .../061-libdatrie1_0.2.14-1_amd64.deb ...
169s Unpacking libdatrie1:amd64 (0.2.14-1) ...
169s Selecting previously unselected package libdeflate0:amd64.
169s Preparing to unpack .../062-libdeflate0_1.23-2build1_amd64.deb ...
169s Unpacking libdeflate0:amd64 (1.23-2build1) ...
169s Selecting previously unselected package libdeflate-dev:amd64.
169s Preparing to unpack .../063-libdeflate-dev_1.23-2build1_amd64.deb ...
169s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
169s Selecting previously unselected package libltdl7:amd64.
169s Preparing to unpack .../064-libltdl7_2.5.4-9_amd64.deb ...
169s Unpacking libltdl7:amd64 (2.5.4-9) ...
169s Selecting previously unselected package libglpk40:amd64.
169s Preparing to unpack .../065-libglpk40_5.0-2_amd64.deb ...
169s Unpacking libglpk40:amd64 (5.0-2) ...
169s Selecting previously unselected package libgraphite2-3:amd64.
169s Preparing to unpack .../066-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
169s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
169s Selecting previously unselected package libharfbuzz0b:amd64.
169s Preparing to unpack .../067-libharfbuzz0b_12.3.2-1_amd64.deb ...
169s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
169s Selecting previously unselected package x11-common.
169s Preparing to unpack .../068-x11-common_1%3a7.7+24ubuntu1_all.deb ...
169s Unpacking x11-common (1:7.7+24ubuntu1) ...
169s Selecting previously unselected package libice6:amd64.
169s Preparing to unpack .../069-libice6_2%3a1.1.1-1build1_amd64.deb ...
169s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
169s Selecting previously unselected package libicu-dev:amd64.
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172s Selecting previously unselected package r-bioc-summarizedexperiment.
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172s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
172s Selecting previously unselected package r-cran-bitops.
172s Preparing to unpack .../174-r-cran-bitops_1.0-9-1_amd64.deb ...
172s Unpacking r-cran-bitops (1.0-9-1) ...
172s Selecting previously unselected package r-bioc-rhtslib.
172s Preparing to unpack .../175-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ...
172s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
172s Selecting previously unselected package r-bioc-rsamtools.
172s Preparing to unpack .../176-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ...
172s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
172s Selecting previously unselected package r-bioc-genomicalignments.
172s Preparing to unpack .../177-r-bioc-genomicalignments_1.42.0-2_amd64.deb ...
172s Unpacking r-bioc-genomicalignments (1.42.0-2) ...
172s Selecting previously unselected package r-cran-mass.
172s Preparing to unpack .../178-r-cran-mass_7.3-65-1_amd64.deb ...
172s Unpacking r-cran-mass (7.3-65-1) ...
172s Selecting previously unselected package r-cran-pixmap.
172s Preparing to unpack .../179-r-cran-pixmap_0.4-14-1_all.deb ...
172s Unpacking r-cran-pixmap (0.4-14-1) ...
172s Selecting previously unselected package r-cran-sp.
172s Preparing to unpack .../180-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ...
172s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ...
172s Selecting previously unselected package r-cran-littler.
172s Preparing to unpack .../181-r-cran-littler_0.3.22-1_amd64.deb ...
172s Unpacking r-cran-littler (0.3.22-1) ...
172s Selecting previously unselected package r-cran-pkgkitten.
172s Preparing to unpack .../182-r-cran-pkgkitten_0.2.4-1_all.deb ...
172s Unpacking r-cran-pkgkitten (0.2.4-1) ...
172s Selecting previously unselected package r-cran-rcpp.
172s Preparing to unpack .../183-r-cran-rcpp_1.1.0-1_amd64.deb ...
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172s Selecting previously unselected package r-cran-rcpparmadillo.
172s Preparing to unpack .../184-r-cran-rcpparmadillo_15.2.3-1-1_amd64.deb ...
172s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ...
172s Selecting previously unselected package r-cran-ade4.
172s Preparing to unpack .../185-r-cran-ade4_1.7-23-1_amd64.deb ...
172s Unpacking r-cran-ade4 (1.7-23-1) ...
172s Selecting previously unselected package r-cran-cli.
172s Preparing to unpack .../186-r-cran-cli_3.6.4-1_amd64.deb ...
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172s Selecting previously unselected package r-cran-clipr.
172s Preparing to unpack .../187-r-cran-clipr_0.8.0-1build1_all.deb ...
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172s Selecting previously unselected package r-cran-rlang.
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172s Selecting previously unselected package r-cran-lifecycle.
172s Preparing to unpack .../189-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ...
172s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ...
172s Selecting previously unselected package r-cran-pkgconfig.
172s Preparing to unpack .../190-r-cran-pkgconfig_2.0.3-2build2_all.deb ...
172s Unpacking r-cran-pkgconfig (2.0.3-2build2) ...
172s Selecting previously unselected package r-cran-glue.
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172s Selecting previously unselected package r-cran-vctrs.
172s Preparing to unpack .../192-r-cran-vctrs_0.6.5-1_amd64.deb ...
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172s Selecting previously unselected package r-cran-hms.
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172s Selecting previously unselected package r-cran-fansi.
172s Preparing to unpack .../194-r-cran-fansi_1.0.6-2_amd64.deb ...
172s Unpacking r-cran-fansi (1.0.6-2) ...
172s Selecting previously unselected package r-cran-magrittr.
172s Preparing to unpack .../195-r-cran-magrittr_2.0.3-1_amd64.deb ...
173s Unpacking r-cran-magrittr (2.0.3-1) ...
173s Selecting previously unselected package r-cran-utf8.
173s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-pillar.
173s Preparing to unpack .../197-r-cran-pillar_1.11.1+dfsg-1_all.deb ...
173s Unpacking r-cran-pillar (1.11.1+dfsg-1) ...
173s Selecting previously unselected package r-cran-tibble.
173s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
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173s Selecting previously unselected package r-cran-bit.
173s Preparing to unpack .../199-r-cran-bit_4.6.0+dfsg-1_amd64.deb ...
173s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-bit64.
173s Preparing to unpack .../200-r-cran-bit64_4.6.0-1-4_amd64.deb ...
173s Unpacking r-cran-bit64 (4.6.0-1-4) ...
173s Selecting previously unselected package r-cran-withr.
173s Preparing to unpack .../201-r-cran-withr_3.0.2+dfsg-1_all.deb ...
173s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
173s Selecting previously unselected package r-cran-tidyselect.
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173s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
173s Selecting previously unselected package r-cran-tzdb.
173s Preparing to unpack .../203-r-cran-tzdb_0.5.0-1_amd64.deb ...
173s Unpacking r-cran-tzdb (0.5.0-1) ...
173s Selecting previously unselected package r-cran-prettyunits.
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173s Unpacking r-cran-prettyunits (1.2.0-1) ...
173s Selecting previously unselected package r-cran-progress.
173s Preparing to unpack .../205-r-cran-progress_1.2.3-1_all.deb ...
173s Unpacking r-cran-progress (1.2.3-1) ...
173s Selecting previously unselected package r-cran-vroom.
173s Preparing to unpack .../206-r-cran-vroom_1.7.0-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-readr.
173s Preparing to unpack .../207-r-cran-readr_2.1.6-1_amd64.deb ...
173s Unpacking r-cran-readr (2.1.6-1) ...
173s Selecting previously unselected package r-cran-stringi.
173s Preparing to unpack .../208-r-cran-stringi_1.8.4-1build2_amd64.deb ...
173s Unpacking r-cran-stringi (1.8.4-1build2) ...
173s Selecting previously unselected package r-cran-yaml.
173s Preparing to unpack .../209-r-cran-yaml_2.3.10-1_amd64.deb ...
173s Unpacking r-cran-yaml (2.3.10-1) ...
173s Selecting previously unselected package r-cran-airr.
173s Preparing to unpack .../210-r-cran-airr_1.5.0+dfsg-1_all.deb ...
173s Unpacking r-cran-airr (1.5.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-gtable.
173s Preparing to unpack .../211-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
173s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
173s Selecting previously unselected package r-cran-isoband.
173s Preparing to unpack .../212-r-cran-isoband_0.2.7-1_amd64.deb ...
173s Unpacking r-cran-isoband (0.2.7-1) ...
173s Selecting previously unselected package r-cran-s7.
173s Preparing to unpack .../213-r-cran-s7_0.2.0-1_amd64.deb ...
173s Unpacking r-cran-s7 (0.2.0-1) ...
173s Selecting previously unselected package r-cran-farver.
173s Preparing to unpack .../214-r-cran-farver_2.1.2-1_amd64.deb ...
173s Unpacking r-cran-farver (2.1.2-1) ...
173s Selecting previously unselected package r-cran-labeling.
173s Preparing to unpack .../215-r-cran-labeling_0.4.3-1_all.deb ...
173s Unpacking r-cran-labeling (0.4.3-1) ...
173s Selecting previously unselected package r-cran-rcolorbrewer.
173s Preparing to unpack .../216-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ...
173s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ...
173s Selecting previously unselected package r-cran-viridislite.
173s Preparing to unpack .../217-r-cran-viridislite_0.4.3-1_all.deb ...
173s Unpacking r-cran-viridislite (0.4.3-1) ...
173s Selecting previously unselected package r-cran-scales.
173s Preparing to unpack .../218-r-cran-scales_1.4.0-1_all.deb ...
173s Unpacking r-cran-scales (1.4.0-1) ...
173s Selecting previously unselected package r-cran-ggplot2.
173s Preparing to unpack .../219-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ...
173s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ...
173s Selecting previously unselected package r-cran-nlme.
173s Preparing to unpack .../220-r-cran-nlme_3.1.168-1_amd64.deb ...
173s Unpacking r-cran-nlme (3.1.168-1) ...
173s Selecting previously unselected package r-cran-digest.
173s Preparing to unpack .../221-r-cran-digest_0.6.39-1_amd64.deb ...
173s Unpacking r-cran-digest (0.6.39-1) ...
173s Selecting previously unselected package r-cran-ape.
173s Preparing to unpack .../222-r-cran-ape_5.8-1-1_amd64.deb ...
173s Unpacking r-cran-ape (5.8-1-1) ...
173s Selecting previously unselected package r-cran-generics.
173s Preparing to unpack .../223-r-cran-generics_0.1.4-1_all.deb ...
173s Unpacking r-cran-generics (0.1.4-1) ...
173s Selecting previously unselected package r-cran-dplyr.
173s Preparing to unpack .../224-r-cran-dplyr_1.1.4-4_amd64.deb ...
173s Unpacking r-cran-dplyr (1.1.4-4) ...
173s Selecting previously unselected package r-cran-igraph.
173s Preparing to unpack .../225-r-cran-igraph_2.1.4-1build1_amd64.deb ...
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173s Selecting previously unselected package r-cran-segmented.
173s Preparing to unpack .../226-r-cran-segmented_2.1-4-1_all.deb ...
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173s Selecting previously unselected package r-cran-seqinr.
173s Preparing to unpack .../227-r-cran-seqinr_4.2-36-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-purrr.
173s Preparing to unpack .../228-r-cran-purrr_1.0.4-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-stringr.
173s Preparing to unpack .../229-r-cran-stringr_1.5.1-1_all.deb ...
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173s Selecting previously unselected package r-cran-tidyr.
173s Preparing to unpack .../230-r-cran-tidyr_1.3.1-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-alakazam.
173s Preparing to unpack .../231-r-cran-alakazam_1.3.0-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-base64enc.
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173s Selecting previously unselected package r-cran-brio.
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173s Selecting previously unselected package r-cran-fastmap.
173s Preparing to unpack .../234-r-cran-fastmap_1.2.0-1_amd64.deb ...
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173s Selecting previously unselected package r-cran-cachem.
173s Preparing to unpack .../235-r-cran-cachem_1.1.0-1_amd64.deb ...
173s Unpacking r-cran-cachem (1.1.0-1) ...
173s Selecting previously unselected package r-cran-htmltools.
173s Preparing to unpack .../236-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
173s Unpacking r-cran-htmltools (0.5.8.1-1) ...
173s Selecting previously unselected package r-cran-jquerylib.
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173s Selecting previously unselected package r-cran-memoise.
173s Preparing to unpack .../238-r-cran-memoise_2.0.1-1build1_all.deb ...
173s Unpacking r-cran-memoise (2.0.1-1build1) ...
173s Selecting previously unselected package r-cran-fs.
173s Preparing to unpack .../239-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
173s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
173s Selecting previously unselected package r-cran-rappdirs.
173s Preparing to unpack .../240-r-cran-rappdirs_0.3.3-1build1_amd64.deb ...
173s Unpacking r-cran-rappdirs (0.3.3-1build1) ...
173s Selecting previously unselected package r-cran-sass.
173s Preparing to unpack .../241-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
173s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
173s Selecting previously unselected package r-cran-bslib.
173s Preparing to unpack .../242-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ...
173s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ...
174s Selecting previously unselected package r-cran-ps.
174s Preparing to unpack .../243-r-cran-ps_1.9.0-1_amd64.deb ...
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174s Selecting previously unselected package r-cran-processx.
174s Preparing to unpack .../244-r-cran-processx_3.8.6-1_amd64.deb ...
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174s Selecting previously unselected package r-cran-callr.
174s Preparing to unpack .../245-r-cran-callr_3.7.6-1_all.deb ...
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174s Selecting previously unselected package r-cran-commonmark.
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174s Selecting previously unselected package r-cran-desc.
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174s Selecting previously unselected package r-cran-diffobj.
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174s Unpacking r-cran-diffobj (0.3.5-1build1) ...
174s Selecting previously unselected package r-cran-diptest.
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174s Selecting previously unselected package r-cran-iterators.
174s Preparing to unpack .../250-r-cran-iterators_1.0.14-1build1_all.deb ...
174s Unpacking r-cran-iterators (1.0.14-1build1) ...
174s Selecting previously unselected package r-cran-foreach.
174s Preparing to unpack .../251-r-cran-foreach_1.5.2-1build1_all.deb ...
174s Unpacking r-cran-foreach (1.5.2-1build1) ...
174s Selecting previously unselected package r-cran-doparallel.
174s Preparing to unpack .../252-r-cran-doparallel_1.0.17-1build1_all.deb ...
174s Unpacking r-cran-doparallel (1.0.17-1build1) ...
174s Selecting previously unselected package r-cran-evaluate.
174s Preparing to unpack .../253-r-cran-evaluate_1.0.5-1_all.deb ...
174s Unpacking r-cran-evaluate (1.0.5-1) ...
174s Selecting previously unselected package r-cran-fontawesome.
174s Preparing to unpack .../254-r-cran-fontawesome_0.5.3-1_all.deb ...
174s Unpacking r-cran-fontawesome (0.5.3-1) ...
174s Selecting previously unselected package r-cran-xfun.
174s Preparing to unpack .../255-r-cran-xfun_0.55+dfsg-1_amd64.deb ...
174s Unpacking r-cran-xfun (0.55+dfsg-1) ...
174s Selecting previously unselected package r-cran-highr.
174s Preparing to unpack .../256-r-cran-highr_0.11+dfsg-1_all.deb ...
174s Unpacking r-cran-highr (0.11+dfsg-1) ...
174s Selecting previously unselected package r-cran-later.
174s Preparing to unpack .../257-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
174s Unpacking r-cran-later (1.4.1+dfsg-1) ...
174s Selecting previously unselected package r-cran-promises.
174s Preparing to unpack .../258-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
174s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
174s Selecting previously unselected package r-cran-httpuv.
174s Preparing to unpack .../259-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
174s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
174s Selecting previously unselected package r-cran-kernsmooth.
174s Preparing to unpack .../260-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ...
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174s Selecting previously unselected package libjs-mathjax.
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174s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ...
174s Selecting previously unselected package r-cran-knitr.
174s Preparing to unpack .../262-r-cran-knitr_1.51+dfsg-1_all.deb ...
174s Unpacking r-cran-knitr (1.51+dfsg-1) ...
174s Selecting previously unselected package r-cran-lazyeval.
174s Preparing to unpack .../263-r-cran-lazyeval_0.2.2-1build2_amd64.deb ...
174s Unpacking r-cran-lazyeval (0.2.2-1build2) ...
174s Selecting previously unselected package r-cran-pkgbuild.
174s Preparing to unpack .../264-r-cran-pkgbuild_1.4.8-1_all.deb ...
174s Unpacking r-cran-pkgbuild (1.4.8-1) ...
174s Selecting previously unselected package r-cran-rprojroot.
174s Preparing to unpack .../265-r-cran-rprojroot_2.1.1-1_all.deb ...
174s Unpacking r-cran-rprojroot (2.1.1-1) ...
174s Selecting previously unselected package r-cran-pkgload.
174s Preparing to unpack .../266-r-cran-pkgload_1.4.1-1_all.deb ...
174s Unpacking r-cran-pkgload (1.4.1-1) ...
174s Selecting previously unselected package r-cran-praise.
174s Preparing to unpack .../267-r-cran-praise_1.0.0-4build2_all.deb ...
174s Unpacking r-cran-praise (1.0.0-4build2) ...
174s Selecting previously unselected package r-cran-tinytex.
174s Preparing to unpack .../268-r-cran-tinytex_0.58-1_all.deb ...
174s Unpacking r-cran-tinytex (0.58-1) ...
174s Selecting previously unselected package libjs-modernizr.
174s Preparing to unpack .../269-libjs-modernizr_3.13.0-0.1build1_all.deb ...
174s Unpacking libjs-modernizr (3.13.0-0.1build1) ...
174s Selecting previously unselected package r-cran-xtable.
174s Preparing to unpack .../270-r-cran-xtable_1%3a1.8-4-2build1_all.deb ...
174s Unpacking r-cran-xtable (1:1.8-4-2build1) ...
174s Selecting previously unselected package r-cran-sourcetools.
174s Preparing to unpack .../271-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
174s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
174s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
174s Preparing to unpack .../272-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
174s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
174s Selecting previously unselected package r-cran-shiny.
174s Preparing to unpack .../273-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
174s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
174s Selecting previously unselected package r-cran-rmarkdown.
174s Preparing to unpack .../274-r-cran-rmarkdown_2.30+dfsg-1_all.deb ...
174s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ...
174s Selecting previously unselected package r-cran-shazam.
174s Preparing to unpack .../275-r-cran-shazam_1.2.0-1_all.deb ...
174s Unpacking r-cran-shazam (1.2.0-1) ...
174s Selecting previously unselected package r-cran-waldo.
174s Preparing to unpack .../276-r-cran-waldo_0.6.2-1_all.deb ...
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177s Setting up r-cran-ps (1.9.0-1) ...
177s Setting up r-cran-nlme (3.1.168-1) ...
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177s Setting up r-cran-formatr (1.14-2) ...
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177s Setting up r-cran-clipr (0.8.0-1build1) ...
177s Setting up r-cran-commonmark (1.9.5-1) ...
177s Setting up r-cran-r6 (2.6.1-1) ...
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177s Setting up g++-15 (15.2.0-12ubuntu1) ...
177s Setting up r-cran-magrittr (2.0.3-1) ...
177s Setting up r-cran-rappdirs (0.3.3-1build1) ...
177s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
177s Setting up r-cran-littler (0.3.22-1) ...
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177s Setting up r-cran-diffobj (0.3.5-1build1) ...
177s Setting up r-cran-diptest (0.77-1-1) ...
177s Setting up r-bioc-biocgenerics (0.52.0-2) ...
177s Setting up r-cran-rlang (1.1.5-3) ...
177s Setting up r-cran-matrixstats (1.5.0-1) ...
177s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
177s Setting up r-cran-xfun (0.55+dfsg-1) ...
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177s Setting up gfortran (4:15.2.0-4ubuntu1) ...
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177s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
177s Setting up r-cran-pkgconfig (2.0.3-2build2) ...
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177s Setting up r-cran-utf8 (1.2.4-1) ...
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177s Setting up r-cran-s7 (0.2.0-1) ...
177s Setting up r-cran-cpp11 (0.5.3-1) ...
177s Setting up r-cran-segmented (2.1-4-1) ...
177s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
177s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
177s Setting up r-cran-isoband (0.2.7-1) ...
177s Setting up r-cran-futile.logger (1.4.3-4build2) ...
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177s Setting up r-cran-matrix (1.7-4-1) ...
177s Setting up r-cran-doparallel (1.0.17-1build1) ...
177s Setting up r-cran-htmltools (0.5.8.1-1) ...
177s Setting up r-cran-tinytex (0.58-1) ...
177s Setting up r-cran-kernsmooth (2.23-26-1build1) ...
177s Setting up r-cran-knitr (1.51+dfsg-1) ...
177s Setting up g++ (4:15.2.0-4ubuntu1) ...
177s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
177s Setting up r-cran-cachem (1.1.0-1) ...
177s Setting up r-cran-sass (0.4.9+dfsg-1) ...
177s Setting up build-essential (12.12ubuntu2) ...
177s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ...
177s Setting up r-bioc-iranges (2.40.1-3) ...
177s Setting up r-cran-tzdb (0.5.0-1) ...
177s Setting up r-cran-vctrs (0.6.5-1) ...
177s Setting up r-cran-pillar (1.11.1+dfsg-1) ...
177s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
177s Setting up r-base-dev (4.5.2-1ubuntu2) ...
177s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
177s Setting up r-cran-stringr (1.5.1-1) ...
177s Setting up r-bioc-biocparallel (1.40.0-2) ...
177s Setting up r-cran-callr (3.7.6-1) ...
177s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
177s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
177s Setting up r-cran-desc (1.4.3-1) ...
177s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
177s Setting up r-cran-fontawesome (0.5.3-1) ...
177s Setting up r-cran-igraph (2.1.4-1build1) ...
177s Setting up r-cran-ade4 (1.7-23-1) ...
177s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
177s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
177s Setting up r-cran-httr (1.4.7+dfsg-1) ...
177s Setting up r-cran-hms (1.1.4-1) ...
177s Setting up r-cran-memoise (2.0.1-1build1) ...
177s Setting up r-cran-promises (1.3.2+dfsg-1) ...
177s Setting up r-cran-purrr (1.0.4-1) ...
177s Setting up pkg-r-autopkgtest (20250812) ...
177s Setting up r-bioc-xvector (0.46.0-2) ...
177s Setting up r-cran-pkgbuild (1.4.8-1) ...
177s Setting up r-cran-dplyr (1.1.4-4) ...
177s Setting up r-cran-progress (1.2.3-1) ...
177s Setting up r-cran-pkgload (1.4.1-1) ...
177s Setting up r-cran-vroom (1.7.0-1) ...
177s Setting up r-cran-seqinr (4.2-36-1) ...
177s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
177s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
177s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
177s Setting up r-cran-testthat (3.2.3-1) ...
177s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
177s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
177s Setting up r-cran-readr (2.1.6-1) ...
177s Setting up r-cran-tidyr (1.3.1-1) ...
177s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
177s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
177s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
177s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
177s Setting up r-cran-airr (1.5.0+dfsg-1) ...
177s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
177s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
177s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
177s Setting up r-bioc-genomicalignments (1.42.0-2) ...
177s Setting up r-cran-alakazam (1.3.0-1) ...
177s Setting up r-cran-shazam (1.2.0-1) ...
177s Processing triggers for libc-bin (2.42-2ubuntu4) ...
177s Processing triggers for man-db (2.13.1-1build1) ...
178s Processing triggers for install-info (7.2-5) ...
179s autopkgtest [05:55:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
179s autopkgtest [05:55:38]: test pkg-r-autopkgtest: [-----------------------
179s Test: Try to load the R library shazam
179s 
179s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
179s Copyright (C) 2025 The R Foundation for Statistical Computing
179s Platform: x86_64-pc-linux-gnu
179s 
179s R is free software and comes with ABSOLUTELY NO WARRANTY.
179s You are welcome to redistribute it under certain conditions.
179s Type 'license()' or 'licence()' for distribution details.
179s 
179s R is a collaborative project with many contributors.
179s Type 'contributors()' for more information and
179s 'citation()' on how to cite R or R packages in publications.
179s 
179s Type 'demo()' for some demos, 'help()' for on-line help, or
179s 'help.start()' for an HTML browser interface to help.
179s Type 'q()' to quit R.
179s 
179s > library('shazam')
179s Loading required package: ggplot2
185s 
185s 
185s To cite the SHazaM package in publications, please use:
185s 
185s   Gupta N, Vander Heiden J, Uduman M, Gadala-Maria D, Yaari G,
185s   Kleinstein S (2015). “Change-O: a toolkit for analyzing large-scale B
185s   cell immunoglobulin repertoire sequencing data.” _Bioinformatics_,
185s   1-3. doi:10.1093/bioinformatics/btv359
185s   <https://doi.org/10.1093/bioinformatics/btv359>.
185s 
185s To cite the selection analysis methods, please use:
185s 
185s   Yaari G, Uduman M, Kleinstein S (2012). “Quantifying selection in
185s   high-throughput Immunoglobulin sequencing data sets.” _Nucleic acids
185s   research_, *40*(17), e134. doi:10.1093/nar/gks457
185s   <https://doi.org/10.1093/nar/gks457>.
185s 
185s To cite the HH_S5F model and the targeting model generation methods,
185s please use:
185s 
185s   Yaari G, Vander Heiden J, Uduman M, Gadala-Maria D, Gupta N, Stern J,
185s   O'Connor K, Hafler D, Lasserson U, Vigneault F, Kleinstein S (2013).
185s   “Models of somatic hypermutation targeting and substitution based on
185s   synonymous mutations from high-throughput immunoglobulin sequencing
185s   data.” _Frontiers in Immunology_, *4*(358), 1-11.
185s   doi:10.3389/fimmu.2013.00358
185s   <https://doi.org/10.3389/fimmu.2013.00358>.
185s 
185s To cite the HKL_S1F, HKL_S5F, MK_RS1NF, and MK_RS5NF models, please
185s use:
185s 
185s   Cui A, Di Niro R, Vander Heiden J, Briggs A, Adams K, Gilbert T,
185s   O'Connor K, Vigneault F, Shlomchik M, Kleinstein S (2016). “A Model
185s   of Somatic Hypermutation Targeting in Mice Based on High-Throughput
185s   Ig Sequencing Data.” _The Journal of Immunology_, *197*(9),
185s   3566-3574. doi:10.4049/jimmunol.1502263
185s   <https://doi.org/10.4049/jimmunol.1502263>.
185s 
185s To see these entries in BibTeX format, use 'format(<citation>,
185s bibtex=TRUE)', or 'toBibtex(.)'.
185s > 
185s autopkgtest [05:55:44]: test pkg-r-autopkgtest: -----------------------]
186s pkg-r-autopkgtest    PASS
186s autopkgtest [05:55:45]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
186s autopkgtest [05:55:45]: @@@@@@@@@@@@@@@@@@@@ summary
186s pkg-r-autopkgtest    PASS