0s autopkgtest [05:49:25]: starting date and time: 2026-02-10 05:49:25+0000
  0s autopkgtest [05:49:25]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [05:49:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dp2hh9zv/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-sctransform --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-4.secgroup --name adt-resolute-amd64-r-cran-sctransform-20260210-054925-juju-7f2275-prod-proposed-migration-environment-2-2ed51140-9c4c-4150-a3af-80c9ae69cf23 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  4s Creating nova instance adt-resolute-amd64-r-cran-sctransform-20260210-054925-juju-7f2275-prod-proposed-migration-environment-2-2ed51140-9c4c-4150-a3af-80c9ae69cf23 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 74s autopkgtest [05:50:39]: testbed dpkg architecture: amd64
 74s autopkgtest [05:50:39]: testbed apt version: 3.1.14
 74s autopkgtest [05:50:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [05:50:40]: testbed release detected to be: None
 75s autopkgtest [05:50:40]: updating testbed package index (apt update)
 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [178 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1727 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [219 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6184 B]
 76s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 76s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1787 kB]
 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [792 kB]
 76s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.5 kB]
 76s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 76s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 76s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 77s Fetched 5197 kB in 1s (4661 kB/s)
 78s Reading package lists...
 78s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 78s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 78s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 79s Reading package lists...
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 79s Calculating upgrade...
 79s The following package was automatically installed and is no longer required:
 79s   libpython3.13
 79s Use 'sudo apt autoremove' to remove it.
 79s The following NEW packages will be installed:
 79s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 79s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 79s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 79s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 79s The following packages will be upgraded:
 79s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 79s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 79s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 79s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 79s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbrotli1 libbsd0
 79s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 79s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 79s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 79s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 79s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 79s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 79s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 79s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 79s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 79s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 79s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 79s 91 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 79s Need to get 237 MB of archives.
 79s After this operation, 339 MB of additional disk space will be used.
 79s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 79s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 79s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 79s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 79s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 79s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 79s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 79s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 79s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 79s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 79s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 80s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 80s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 80s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 80s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 80s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 80s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 80s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 80s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 80s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 80s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 80s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 80s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 80s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 80s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 80s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 80s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 80s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 80s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 80s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 80s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 80s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 80s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 80s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 80s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 80s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 80s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 80s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 80s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 80s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 80s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 80s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 80s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 80s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 80s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 80s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 80s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 80s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 80s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 80s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 80s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 80s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 80s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 80s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 80s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.2.0-3 [343 kB]
 80s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 80s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 80s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 80s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 80s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 80s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 80s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 80s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 80s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 80s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 80s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 86s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 86s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 86s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 86s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 86s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 86s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 86s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 87s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 88s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 88s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 88s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 88s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 88s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 88s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 88s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 88s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 88s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 88s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 89s Fetched 237 MB in 9s (25.9 MB/s)
 89s (Reading database ... 
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 89s (Reading database ... 65%
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 89s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 89s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 89s Setting up debianutils (5.23.2build1) ...
 89s (Reading database ... 
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 89s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 89s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 89s Setting up dash (0.5.12-12ubuntu3) ...
 89s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 89s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 89s Setting up findutils (4.10.0-3build2) ...
 89s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 89s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 89s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 89s Setting up sed (4.9-2build3) ...
 89s (Reading database ... 
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 89s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 89s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
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 97s Setting up less (668-1build1) ...
 97s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
 97s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
 97s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 97s amd64-microcode: microcode will be updated at next boot
 97s Setting up man-db (2.13.1-1build1) ...
 97s Updating database of manual pages ...
 98s man-db.service is a disabled or a static unit not running, not starting it.
 98s Setting up libjansson4:amd64 (2.14-2build4) ...
 98s Setting up libglib2.0-data (2.87.2-2) ...
 98s Setting up pollinate (4.33-4ubuntu5) ...
109s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
109s Setting up libwrap0:amd64 (7.6.q-36build2) ...
109s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
110s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
110s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
110s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
110s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
110s Setting up patch (2.8-2build1) ...
110s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
110s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
110s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
110s Setting up lsof (4.99.4+dfsg-2build2) ...
110s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
110s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
110s Setting up dracut-install (109-11ubuntu1) ...
110s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
110s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
110s Setting up pnp.ids (0.394-1build1) ...
110s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
110s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
110s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
110s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
110s Setting up mawk (1.3.4.20260129-1) ...
110s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
110s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
110s Setting up linux-image-virtual (6.19.0-3.3) ...
110s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
110s Setting up libbsd0:amd64 (0.12.2-2build2) ...
110s Setting up libdrm-common (2.4.131-1) ...
110s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
110s Setting up dbus-bin (1.16.2-2ubuntu3) ...
110s Setting up libonig5:amd64 (6.9.10-1build1) ...
110s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
110s Setting up ethtool (1:6.15-3build1) ...
110s Setting up python3-referencing (0.36.2-1ubuntu2) ...
110s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
110s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
110s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
110s Setting up tcpdump (4.99.5-2ubuntu3) ...
110s Setting up linux-image-generic (6.19.0-3.3) ...
110s Setting up wget (1.25.0-2ubuntu4) ...
110s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
110s Setting up iptables (1.8.11-2ubuntu3) ...
110s Setting up iproute2 (6.18.0-1ubuntu1) ...
110s Setting up linux-headers-generic (6.19.0-3.3) ...
110s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
110s Setting up hwdata (0.394-1build1) ...
110s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
110s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
110s No schema files found: doing nothing.
110s Setting up dbus (1.16.2-2ubuntu3) ...
110s A reboot is required to replace the running dbus-daemon.
110s Please reboot the system when convenient.
111s Setting up shared-mime-info (2.4-5build3) ...
111s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
111s Setting up pciutils (1:3.14.0-1build2) ...
111s Setting up python3-markdown-it (3.0.0-3build1) ...
111s Setting up libdrm2:amd64 (2.4.131-1) ...
111s Setting up libpython3.14:amd64 (3.14.2-1) ...
111s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
111s Setting up linux-tools-common (6.19.0-3.3) ...
111s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
111s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
111s Setting up apt (3.1.15) ...
112s Setting up linux-headers-virtual (6.19.0-3.3) ...
112s Setting up linux-generic (6.19.0-3.3) ...
112s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
112s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
112s Setting up ubuntu-standard (1.564) ...
112s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
112s Setting up linux-virtual (6.19.0-3.3) ...
112s Setting up linux-perf (6.19.0-3.3) ...
112s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
112s Processing triggers for debianutils (5.23.2build1) ...
112s Processing triggers for install-info (7.2-5) ...
112s Processing triggers for initramfs-tools (0.150ubuntu7) ...
112s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
116s Processing triggers for libc-bin (2.42-2ubuntu4) ...
116s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
116s /etc/kernel/postinst.d/initramfs-tools:
116s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
120s /etc/kernel/postinst.d/zz-update-grub:
120s Sourcing file `/etc/default/grub'
120s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
120s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
120s Generating grub configuration file ...
120s Found linux image: /boot/vmlinuz-6.19.0-3-generic
120s Found initrd image: /boot/initrd.img-6.19.0-3-generic
120s Found linux image: /boot/vmlinuz-6.18.0-9-generic
120s Found initrd image: /boot/initrd.img-6.18.0-9-generic
120s Warning: os-prober will not be executed to detect other bootable partitions.
120s Systems on them will not be added to the GRUB boot configuration.
120s Check GRUB_DISABLE_OS_PROBER documentation entry.
120s Adding boot menu entry for UEFI Firmware Settings ...
120s done
120s autopkgtest [05:51:25]: upgrading testbed (apt dist-upgrade and autopurge)
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s Calculating upgrade...
121s The following package was automatically installed and is no longer required:
121s   libpython3.13
121s Use 'sudo apt autoremove' to remove it.
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s Solving dependencies...
122s The following packages will be REMOVED:
122s   libpython3.13*
122s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
122s After this operation, 7599 kB disk space will be freed.
122s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
122s Removing libpython3.13:amd64 (3.13.11-1) ...
122s Processing triggers for libc-bin (2.42-2ubuntu4) ...
122s autopkgtest [05:51:27]: rebooting testbed after setup commands that affected boot
151s autopkgtest [05:51:56]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
153s autopkgtest [05:51:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sctransform
154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (dsc) [2408 B]
154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (tar) [198 kB]
154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (diff) [2988 B]
154s gpgv: Signature made Wed Nov  1 07:12:04 2023 UTC
154s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
154s gpgv:                issuer "tille@debian.org"
154s gpgv: Can't check signature: No public key
154s dpkg-source: warning: cannot verify inline signature for ./r-cran-sctransform_0.4.1-1.dsc: no acceptable signature found
154s autopkgtest [05:51:59]: testing package r-cran-sctransform version 0.4.1-1
155s autopkgtest [05:52:00]: build not needed
158s autopkgtest [05:52:03]: test run-unit-test: preparing testbed
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Solving dependencies...
158s The following NEW packages will be installed:
158s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
158s   fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1
158s   libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3
158s   libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap
158s   libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax
158s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
158s   libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
158s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
158s   libxft2 libxrender1 libxss1 libxt6t64 node-normalize.css r-base-core
158s   r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-crayon
158s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate
158s   r-cran-fansi r-cran-farver r-cran-fs r-cran-future r-cran-future.apply
158s   r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra
158s   r-cran-gtable r-cran-highr r-cran-irlba r-cran-isoband r-cran-jsonlite
158s   r-cran-knitr r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-listenv
158s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats
158s   r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
158s   r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx
158s   r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo
158s   r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-s7 r-cran-scales
158s   r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat
158s   r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite
158s   r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils
158s   zip
158s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded.
158s Need to get 92.3 MB of archives.
158s After this operation, 219 MB of additional disk space will be used.
158s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
158s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
159s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
159s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
159s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
159s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
159s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
159s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
159s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
159s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
159s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
159s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
159s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
159s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
159s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
159s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
159s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
159s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
159s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
159s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
159s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
159s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
159s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
159s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
159s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
159s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
159s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
159s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
159s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
159s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
159s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
159s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
159s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
159s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
159s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
159s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
159s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
159s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
159s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
159s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
159s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
159s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
159s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
159s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
159s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
159s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
159s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
159s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
159s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
159s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
159s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
159s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
159s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
159s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
159s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
159s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
160s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
160s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
160s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
160s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
160s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
160s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
160s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
160s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
160s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
160s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
160s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
160s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
160s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
160s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
160s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
160s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
160s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
160s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
160s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
160s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
160s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
160s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
160s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
160s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.19.0-1 [160 kB]
160s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB]
160s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB]
160s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB]
160s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB]
160s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
160s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
160s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
160s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
160s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
160s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
160s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
160s Get:92 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
160s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB]
160s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
160s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
160s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
160s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
160s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB]
160s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
160s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
160s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
161s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
161s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
161s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
161s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
161s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
161s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
161s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
161s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
161s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
161s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
161s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
161s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
161s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
161s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
161s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
161s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB]
161s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
161s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
161s Preconfiguring packages ...
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161s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ...
161s Unpacking fonts-dejavu-mono (2.37-8build1) ...
161s Selecting previously unselected package fonts-dejavu-core.
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161s Selecting previously unselected package fontconfig-config.
161s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
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162s Selecting previously unselected package libfontconfig1:amd64.
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162s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package fontconfig.
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162s Selecting previously unselected package fonts-glyphicons-halflings.
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162s Selecting previously unselected package fonts-mathjax.
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162s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
162s Selecting previously unselected package libblas3:amd64.
162s Preparing to unpack .../007-libblas3_3.12.1-7ubuntu1_amd64.deb ...
162s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
162s Selecting previously unselected package libpixman-1-0:amd64.
162s Preparing to unpack .../008-libpixman-1-0_0.46.4-1_amd64.deb ...
162s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
162s Selecting previously unselected package libxcb-render0:amd64.
162s Preparing to unpack .../009-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
162s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
162s Selecting previously unselected package libxcb-shm0:amd64.
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162s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
162s Selecting previously unselected package libxrender1:amd64.
162s Preparing to unpack .../011-libxrender1_1%3a0.9.12-1_amd64.deb ...
162s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
162s Selecting previously unselected package libcairo2:amd64.
162s Preparing to unpack .../012-libcairo2_1.18.4-3_amd64.deb ...
162s Unpacking libcairo2:amd64 (1.18.4-3) ...
162s Selecting previously unselected package libdatrie1:amd64.
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162s Selecting previously unselected package libdeflate0:amd64.
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162s Unpacking libdeflate0:amd64 (1.23-2build1) ...
162s Selecting previously unselected package libgfortran5:amd64.
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162s Selecting previously unselected package libgomp1:amd64.
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162s Selecting previously unselected package libgraphite2-3:amd64.
162s Preparing to unpack .../017-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
162s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
162s Selecting previously unselected package libharfbuzz0b:amd64.
162s Preparing to unpack .../018-libharfbuzz0b_12.3.2-1_amd64.deb ...
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162s Selecting previously unselected package x11-common.
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162s Selecting previously unselected package libice6:amd64.
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162s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
162s Selecting previously unselected package libjpeg-turbo8:amd64.
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162s Selecting previously unselected package libjpeg8:amd64.
162s Preparing to unpack .../022-libjpeg8_8c-2ubuntu12_amd64.deb ...
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162s Selecting previously unselected package libjs-bootstrap.
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162s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ...
162s Selecting previously unselected package libjs-highlight.js.
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162s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ...
162s Selecting previously unselected package libjs-jquery.
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162s Selecting previously unselected package libjs-jquery-datatables.
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162s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
162s Selecting previously unselected package liblapack3:amd64.
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162s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ...
162s Selecting previously unselected package liblerc4:amd64.
162s Preparing to unpack .../028-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ...
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162s Selecting previously unselected package libthai-data.
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162s Selecting previously unselected package libthai0:amd64.
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162s Unpacking libthai0:amd64 (0.1.30-1) ...
162s Selecting previously unselected package libpango-1.0-0:amd64.
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162s Selecting previously unselected package libpangoft2-1.0-0:amd64.
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162s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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162s Selecting previously unselected package libpaper2:amd64.
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162s Selecting previously unselected package libsharpyuv0:amd64.
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162s Selecting previously unselected package libsm6:amd64.
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162s Unpacking libsm6:amd64 (2:1.2.6-1build1) ...
162s Selecting previously unselected package libtcl8.6:amd64.
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162s Selecting previously unselected package libjbig0:amd64.
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162s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ...
162s Selecting previously unselected package libwebp7:amd64.
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162s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ...
162s Selecting previously unselected package libtiff6:amd64.
162s Preparing to unpack .../041-libtiff6_4.7.0-3ubuntu3_amd64.deb ...
162s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ...
162s Selecting previously unselected package libxft2:amd64.
162s Preparing to unpack .../042-libxft2_2.3.6-1build2_amd64.deb ...
162s Unpacking libxft2:amd64 (2.3.6-1build2) ...
162s Selecting previously unselected package libxss1:amd64.
162s Preparing to unpack .../043-libxss1_1%3a1.2.3-1build4_amd64.deb ...
162s Unpacking libxss1:amd64 (1:1.2.3-1build4) ...
162s Selecting previously unselected package libtk8.6:amd64.
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162s Unpacking libtk8.6:amd64 (8.6.17-1) ...
162s Selecting previously unselected package libxt6t64:amd64.
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162s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ...
162s Selecting previously unselected package node-normalize.css.
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162s Unpacking node-normalize.css (8.0.1-5.1) ...
162s Selecting previously unselected package zip.
162s Preparing to unpack .../047-zip_3.0-15ubuntu3_amd64.deb ...
162s Unpacking zip (3.0-15ubuntu3) ...
162s Selecting previously unselected package unzip.
162s Preparing to unpack .../048-unzip_6.0-29ubuntu1_amd64.deb ...
162s Unpacking unzip (6.0-29ubuntu1) ...
162s Selecting previously unselected package xdg-utils.
162s Preparing to unpack .../049-xdg-utils_1.2.1-2ubuntu2_all.deb ...
162s Unpacking xdg-utils (1.2.1-2ubuntu2) ...
162s Selecting previously unselected package r-base-core.
162s Preparing to unpack .../050-r-base-core_4.5.2-1ubuntu2_amd64.deb ...
162s Unpacking r-base-core (4.5.2-1ubuntu2) ...
162s Selecting previously unselected package r-cran-brio.
162s Preparing to unpack .../051-r-cran-brio_1.1.5-1_amd64.deb ...
162s Unpacking r-cran-brio (1.1.5-1) ...
162s Selecting previously unselected package r-cran-ps.
162s Preparing to unpack .../052-r-cran-ps_1.9.0-1_amd64.deb ...
162s Unpacking r-cran-ps (1.9.0-1) ...
162s Selecting previously unselected package r-cran-r6.
162s Preparing to unpack .../053-r-cran-r6_2.6.1-1_all.deb ...
162s Unpacking r-cran-r6 (2.6.1-1) ...
162s Selecting previously unselected package r-cran-processx.
162s Preparing to unpack .../054-r-cran-processx_3.8.6-1_amd64.deb ...
162s Unpacking r-cran-processx (3.8.6-1) ...
162s Selecting previously unselected package r-cran-callr.
162s Preparing to unpack .../055-r-cran-callr_3.7.6-1_all.deb ...
162s Unpacking r-cran-callr (3.7.6-1) ...
162s Selecting previously unselected package r-cran-cli.
162s Preparing to unpack .../056-r-cran-cli_3.6.4-1_amd64.deb ...
162s Unpacking r-cran-cli (3.6.4-1) ...
162s Selecting previously unselected package r-cran-codetools.
163s Preparing to unpack .../057-r-cran-codetools_0.2-20-1build1_all.deb ...
163s Unpacking r-cran-codetools (0.2-20-1build1) ...
163s Selecting previously unselected package r-cran-crayon.
163s Preparing to unpack .../058-r-cran-crayon_1.5.3-1_all.deb ...
163s Unpacking r-cran-crayon (1.5.3-1) ...
163s Selecting previously unselected package r-cran-desc.
163s Preparing to unpack .../059-r-cran-desc_1.4.3-1_all.deb ...
163s Unpacking r-cran-desc (1.4.3-1) ...
163s Selecting previously unselected package r-cran-diffobj.
163s Preparing to unpack .../060-r-cran-diffobj_0.3.5-1build1_amd64.deb ...
163s Unpacking r-cran-diffobj (0.3.5-1build1) ...
163s Selecting previously unselected package r-cran-digest.
163s Preparing to unpack .../061-r-cran-digest_0.6.39-1_amd64.deb ...
163s Unpacking r-cran-digest (0.6.39-1) ...
163s Selecting previously unselected package r-cran-generics.
163s Preparing to unpack .../062-r-cran-generics_0.1.4-1_all.deb ...
163s Unpacking r-cran-generics (0.1.4-1) ...
163s Selecting previously unselected package r-cran-glue.
163s Preparing to unpack .../063-r-cran-glue_1.8.0-1_amd64.deb ...
163s Unpacking r-cran-glue (1.8.0-1) ...
163s Selecting previously unselected package r-cran-rlang.
163s Preparing to unpack .../064-r-cran-rlang_1.1.5-3_amd64.deb ...
163s Unpacking r-cran-rlang (1.1.5-3) ...
163s Selecting previously unselected package r-cran-lifecycle.
163s Preparing to unpack .../065-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ...
163s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ...
163s Selecting previously unselected package r-cran-magrittr.
163s Preparing to unpack .../066-r-cran-magrittr_2.0.3-1_amd64.deb ...
163s Unpacking r-cran-magrittr (2.0.3-1) ...
163s Selecting previously unselected package r-cran-utf8.
163s Preparing to unpack .../067-r-cran-utf8_1.2.4-1_amd64.deb ...
163s Unpacking r-cran-utf8 (1.2.4-1) ...
163s Selecting previously unselected package r-cran-vctrs.
163s Preparing to unpack .../068-r-cran-vctrs_0.6.5-1_amd64.deb ...
163s Unpacking r-cran-vctrs (0.6.5-1) ...
163s Selecting previously unselected package r-cran-pillar.
163s Preparing to unpack .../069-r-cran-pillar_1.11.1+dfsg-1_all.deb ...
163s Unpacking r-cran-pillar (1.11.1+dfsg-1) ...
163s Selecting previously unselected package r-cran-fansi.
163s Preparing to unpack .../070-r-cran-fansi_1.0.6-2_amd64.deb ...
163s Unpacking r-cran-fansi (1.0.6-2) ...
163s Selecting previously unselected package r-cran-pkgconfig.
163s Preparing to unpack .../071-r-cran-pkgconfig_2.0.3-2build2_all.deb ...
163s Unpacking r-cran-pkgconfig (2.0.3-2build2) ...
163s Selecting previously unselected package r-cran-tibble.
163s Preparing to unpack .../072-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
163s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
163s Selecting previously unselected package r-cran-withr.
163s Preparing to unpack .../073-r-cran-withr_3.0.2+dfsg-1_all.deb ...
163s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
163s Selecting previously unselected package r-cran-tidyselect.
163s Preparing to unpack .../074-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ...
163s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
163s Selecting previously unselected package r-cran-dplyr.
163s Preparing to unpack .../075-r-cran-dplyr_1.1.4-4_amd64.deb ...
163s Unpacking r-cran-dplyr (1.1.4-4) ...
163s Selecting previously unselected package r-cran-evaluate.
163s Preparing to unpack .../076-r-cran-evaluate_1.0.5-1_all.deb ...
163s Unpacking r-cran-evaluate (1.0.5-1) ...
163s Selecting previously unselected package r-cran-farver.
163s Preparing to unpack .../077-r-cran-farver_2.1.2-1_amd64.deb ...
163s Unpacking r-cran-farver (2.1.2-1) ...
163s Selecting previously unselected package r-cran-fs.
163s Preparing to unpack .../078-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
163s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
163s Selecting previously unselected package r-cran-globals.
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167s Setting up r-cran-listenv (0.10.0+dfsg-1) ...
167s Setting up r-cran-xfun (0.55+dfsg-1) ...
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167s Setting up r-cran-praise (1.0.0-4build2) ...
167s Setting up r-cran-generics (0.1.4-1) ...
167s Setting up r-cran-digest (0.6.39-1) ...
167s Setting up r-cran-yaml (2.3.10-1) ...
167s Setting up r-cran-evaluate (1.0.5-1) ...
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167s Setting up r-cran-fansi (1.0.6-2) ...
167s Setting up r-cran-mass (7.3-65-1) ...
167s Setting up r-cran-glue (1.8.0-1) ...
167s Setting up r-cran-cli (3.6.4-1) ...
167s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
167s Setting up r-cran-rprojroot (2.1.1-1) ...
167s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
167s Setting up r-cran-pkgconfig (2.0.3-2build2) ...
167s Setting up r-cran-utf8 (1.2.4-1) ...
167s Setting up r-cran-parallelly (1.42.0-1) ...
167s Setting up r-cran-stringi (1.8.4-1build2) ...
167s Setting up r-cran-s7 (0.2.0-1) ...
167s Setting up r-cran-plyr (1.8.9-1) ...
167s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
167s Setting up r-cran-isoband (0.2.7-1) ...
167s Setting up r-cran-waldo (0.6.2-1) ...
167s Setting up r-cran-scales (1.4.0-1) ...
167s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
167s Setting up r-cran-matrix (1.7-4-1) ...
167s Setting up r-cran-irlba (2.3.5.1-4) ...
167s Setting up r-cran-knitr (1.51+dfsg-1) ...
167s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ...
167s Setting up r-cran-globals (0.19.0-1) ...
167s Setting up r-cran-vctrs (0.6.5-1) ...
167s Setting up r-cran-pillar (1.11.1+dfsg-1) ...
167s Setting up r-cran-stringr (1.5.1-1) ...
167s Setting up r-cran-callr (3.7.6-1) ...
167s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
167s Setting up r-cran-desc (1.4.3-1) ...
167s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
167s Setting up r-cran-future (1.34.0+dfsg-1) ...
167s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
167s Setting up r-cran-reshape2 (1.4.4-2build2) ...
167s Setting up r-cran-future.apply (1.11.3+dfsg-1) ...
167s Setting up r-cran-gridextra (2.3-3build2) ...
167s Setting up r-cran-pkgbuild (1.4.8-1) ...
167s Setting up r-cran-dplyr (1.1.4-4) ...
167s Setting up r-cran-sctransform (0.4.1-1) ...
167s Setting up r-cran-pkgload (1.4.1-1) ...
167s Setting up r-cran-testthat (3.2.3-1) ...
167s Processing triggers for libc-bin (2.42-2ubuntu4) ...
167s Processing triggers for man-db (2.13.1-1build1) ...
167s Processing triggers for install-info (7.2-5) ...
168s autopkgtest [05:52:13]: test run-unit-test: [-----------------------
168s BEGIN TEST testthat.R
168s 
168s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
168s Copyright (C) 2025 The R Foundation for Statistical Computing
168s Platform: x86_64-pc-linux-gnu
168s 
168s R is free software and comes with ABSOLUTELY NO WARRANTY.
168s You are welcome to redistribute it under certain conditions.
168s Type 'license()' or 'licence()' for distribution details.
168s 
168s R is a collaborative project with many contributors.
168s Type 'contributors()' for more information and
168s 'citation()' on how to cite R or R packages in publications.
168s 
168s Type 'demo()' for some demos, 'help()' for on-line help, or
168s 'help.start()' for an HTML browser interface to help.
168s Type 'q()' to quit R.
168s 
168s > library(testthat)
169s > library(sctransform)
170s > 
170s > test_check("sctransform")
170s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ]
170s 
170s ══ Skipped tests (10) ══════════════════════════════════════════════════════════
170s • On CRAN (10): 'test_denoising.R:4:3', 'test_generate.R:4:3',
170s   'test_utils.R:4:3', 'test_utils.R:48:3', 'test_utils.R:70:3',
170s   'test_utils.R:83:3', 'test_vst.R:4:3', 'test_vst.R:15:3', 'test_vst.R:31:3',
170s   'test_vst.R:46:3'
170s 
170s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ]
170s > 
170s autopkgtest [05:52:15]: test run-unit-test: -----------------------]
170s run-unit-test        PASS
170s autopkgtest [05:52:15]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
171s autopkgtest [05:52:16]: test pkg-r-autopkgtest: preparing testbed
171s Reading package lists...
171s Building dependency tree...
171s Reading state information...
171s Solving dependencies...
171s The following NEW packages will be installed:
171s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
171s   dctrl-tools g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
171s   gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
171s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
171s   libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
171s   libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev
171s   libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
171s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0
171s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0
171s   libreadline-dev libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev
171s   linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto
171s   zlib1g-dev
171s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 112 MB of archives.
171s After this operation, 402 MB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
171s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
171s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
171s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
171s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
172s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
172s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
172s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
172s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
172s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
172s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
172s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
172s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
172s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
172s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
172s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
173s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
173s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
173s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
173s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
173s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
173s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
173s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
173s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
173s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
174s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
174s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
174s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
174s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
174s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
174s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
174s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
174s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
174s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
174s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
174s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
174s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
174s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
174s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
174s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
174s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
174s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
174s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
174s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
175s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
175s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
175s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
175s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
175s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
175s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
175s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
175s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
175s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
175s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
175s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
175s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
175s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
175s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
175s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
175s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
175s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
175s Fetched 112 MB in 4s (31.5 MB/s)
175s Selecting previously unselected package libc-dev-bin.
175s (Reading database ... 
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175s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
175s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
175s Selecting previously unselected package linux-libc-dev:amd64.
175s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_amd64.deb ...
175s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
175s Selecting previously unselected package libcrypt-dev:amd64.
175s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
175s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
175s Selecting previously unselected package rpcsvc-proto.
175s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
175s Unpacking rpcsvc-proto (1.4.3-1build1) ...
175s Selecting previously unselected package libc6-dev:amd64.
175s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_amd64.deb ...
175s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
175s Selecting previously unselected package libisl23:amd64.
175s Preparing to unpack .../05-libisl23_0.27-1build1_amd64.deb ...
175s Unpacking libisl23:amd64 (0.27-1build1) ...
175s Selecting previously unselected package libmpc3:amd64.
175s Preparing to unpack .../06-libmpc3_1.3.1-2_amd64.deb ...
175s Unpacking libmpc3:amd64 (1.3.1-2) ...
175s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
175s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
175s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
175s Selecting previously unselected package cpp-15.
175s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
175s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
175s Selecting previously unselected package cpp-x86-64-linux-gnu.
175s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
175s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
175s Selecting previously unselected package cpp.
175s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
175s Unpacking cpp (4:15.2.0-4ubuntu1) ...
175s Selecting previously unselected package libcc1-0:amd64.
175s Preparing to unpack .../11-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
175s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
175s Selecting previously unselected package libitm1:amd64.
175s Preparing to unpack .../12-libitm1_16-20260208-1ubuntu1_amd64.deb ...
175s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
175s Selecting previously unselected package libasan8:amd64.
175s Preparing to unpack .../13-libasan8_16-20260208-1ubuntu1_amd64.deb ...
175s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
175s Selecting previously unselected package liblsan0:amd64.
175s Preparing to unpack .../14-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
175s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
175s Selecting previously unselected package libtsan2:amd64.
176s Preparing to unpack .../15-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libubsan1:amd64.
176s Preparing to unpack .../16-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libhwasan0:amd64.
176s Preparing to unpack .../17-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libquadmath0:amd64.
176s Preparing to unpack .../18-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libgcc-15-dev:amd64.
176s Preparing to unpack .../19-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
176s Preparing to unpack .../20-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gcc-15.
176s Preparing to unpack .../21-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gcc-x86-64-linux-gnu.
176s Preparing to unpack .../22-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package gcc.
176s Preparing to unpack .../23-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gcc (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package libstdc++-15-dev:amd64.
176s Preparing to unpack .../24-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package g++-15-x86-64-linux-gnu.
176s Preparing to unpack .../25-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package g++-15.
176s Preparing to unpack .../26-g++-15_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking g++-15 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package g++-x86-64-linux-gnu.
176s Preparing to unpack .../27-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package g++.
176s Preparing to unpack .../28-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking g++ (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package build-essential.
176s Preparing to unpack .../29-build-essential_12.12ubuntu2_amd64.deb ...
176s Unpacking build-essential (12.12ubuntu2) ...
176s Selecting previously unselected package dctrl-tools.
176s Preparing to unpack .../30-dctrl-tools_2.24-3build4_amd64.deb ...
176s Unpacking dctrl-tools (2.24-3build4) ...
176s Selecting previously unselected package libgfortran-15-dev:amd64.
176s Preparing to unpack .../31-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
176s Preparing to unpack .../32-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gfortran-15.
176s Preparing to unpack .../33-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gfortran-x86-64-linux-gnu.
176s Preparing to unpack .../34-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package gfortran.
176s Preparing to unpack .../35-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package icu-devtools.
176s Preparing to unpack .../36-icu-devtools_78.2-1ubuntu1_amd64.deb ...
176s Unpacking icu-devtools (78.2-1ubuntu1) ...
176s Selecting previously unselected package libblas-dev:amd64.
176s Preparing to unpack .../37-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
176s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
176s Selecting previously unselected package libbz2-dev:amd64.
176s Preparing to unpack .../38-libbz2-dev_1.0.8-6build2_amd64.deb ...
176s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
177s Selecting previously unselected package libdeflate-dev:amd64.
177s Preparing to unpack .../39-libdeflate-dev_1.23-2build1_amd64.deb ...
177s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
177s Selecting previously unselected package libicu-dev:amd64.
177s Preparing to unpack .../40-libicu-dev_78.2-1ubuntu1_amd64.deb ...
177s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
177s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
177s Preparing to unpack .../41-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ...
177s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
177s Selecting previously unselected package libjpeg8-dev:amd64.
177s Preparing to unpack .../42-libjpeg8-dev_8c-2ubuntu12_amd64.deb ...
177s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ...
177s Selecting previously unselected package libjpeg-dev:amd64.
177s Preparing to unpack .../43-libjpeg-dev_8c-2ubuntu12_amd64.deb ...
177s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ...
177s Selecting previously unselected package liblapack-dev:amd64.
177s Preparing to unpack .../44-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ...
177s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
177s Selecting previously unselected package libncurses-dev:amd64.
177s Preparing to unpack .../45-libncurses-dev_6.6+20251231-1_amd64.deb ...
177s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ...
177s Selecting previously unselected package libpcre2-16-0:amd64.
177s Preparing to unpack .../46-libpcre2-16-0_10.46-1_amd64.deb ...
177s Unpacking libpcre2-16-0:amd64 (10.46-1) ...
177s Selecting previously unselected package libpcre2-32-0:amd64.
177s Preparing to unpack .../47-libpcre2-32-0_10.46-1_amd64.deb ...
177s Unpacking libpcre2-32-0:amd64 (10.46-1) ...
177s Selecting previously unselected package libpcre2-posix3:amd64.
177s Preparing to unpack .../48-libpcre2-posix3_10.46-1_amd64.deb ...
177s Unpacking libpcre2-posix3:amd64 (10.46-1) ...
177s Selecting previously unselected package libpcre2-dev:amd64.
177s Preparing to unpack .../49-libpcre2-dev_10.46-1_amd64.deb ...
177s Unpacking libpcre2-dev:amd64 (10.46-1) ...
177s Selecting previously unselected package libpkgconf3:amd64.
177s Preparing to unpack .../50-libpkgconf3_1.8.1-4build1_amd64.deb ...
177s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ...
177s Selecting previously unselected package zlib1g-dev:amd64.
177s Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ...
177s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
177s Selecting previously unselected package libpng-dev:amd64.
177s Preparing to unpack .../52-libpng-dev_1.6.54-1_amd64.deb ...
177s Unpacking libpng-dev:amd64 (1.6.54-1) ...
177s Selecting previously unselected package libreadline-dev:amd64.
177s Preparing to unpack .../53-libreadline-dev_8.3-3_amd64.deb ...
177s Unpacking libreadline-dev:amd64 (8.3-3) ...
177s Selecting previously unselected package libzstd-dev:amd64.
177s Preparing to unpack .../54-libzstd-dev_1.5.7+dfsg-3_amd64.deb ...
177s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ...
177s Selecting previously unselected package liblzma-dev:amd64.
177s Preparing to unpack .../55-liblzma-dev_5.8.2-2_amd64.deb ...
177s Unpacking liblzma-dev:amd64 (5.8.2-2) ...
177s Selecting previously unselected package pkgconf-bin.
177s Preparing to unpack .../56-pkgconf-bin_1.8.1-4build1_amd64.deb ...
177s Unpacking pkgconf-bin (1.8.1-4build1) ...
177s Selecting previously unselected package pkgconf:amd64.
177s Preparing to unpack .../57-pkgconf_1.8.1-4build1_amd64.deb ...
177s Unpacking pkgconf:amd64 (1.8.1-4build1) ...
177s Selecting previously unselected package libtirpc-dev:amd64.
177s Preparing to unpack .../58-libtirpc-dev_1.3.6+ds-1_amd64.deb ...
177s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ...
177s Selecting previously unselected package r-base-dev.
177s Preparing to unpack .../59-r-base-dev_4.5.2-1ubuntu2_all.deb ...
177s Unpacking r-base-dev (4.5.2-1ubuntu2) ...
177s Selecting previously unselected package pkg-r-autopkgtest.
177s Preparing to unpack .../60-pkg-r-autopkgtest_20250812_all.deb ...
177s Unpacking pkg-r-autopkgtest (20250812) ...
177s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ...
177s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ...
177s Setting up libpcre2-16-0:amd64 (10.46-1) ...
177s Setting up libpcre2-32-0:amd64 (10.46-1) ...
177s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ...
177s Setting up libpkgconf3:amd64 (1.8.1-4build1) ...
177s Setting up rpcsvc-proto (1.4.3-1build1) ...
177s Setting up libquadmath0:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libmpc3:amd64 (1.3.1-2) ...
177s Setting up icu-devtools (78.2-1ubuntu1) ...
177s Setting up pkgconf-bin (1.8.1-4build1) ...
177s Setting up liblzma-dev:amd64 (5.8.2-2) ...
177s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libpcre2-posix3:amd64 (10.46-1) ...
177s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ...
177s Setting up libasan8:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libisl23:amd64 (0.27-1build1) ...
177s Setting up libc-dev-bin (2.42-2ubuntu4) ...
177s Setting up libdeflate-dev:amd64 (1.23-2build1) ...
177s Setting up libcc1-0:amd64 (16-20260208-1ubuntu1) ...
177s Setting up liblsan0:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ...
177s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
177s Setting up dctrl-tools (2.24-3build4) ...
177s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ...
177s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
177s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
177s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
177s Setting up pkgconf:amd64 (1.8.1-4build1) ...
177s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
177s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
177s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
177s Setting up cpp-15 (15.2.0-12ubuntu1) ...
177s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ...
177s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ...
177s Setting up libbz2-dev:amd64 (1.0.8-6build2) ...
177s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
177s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
177s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
177s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
177s Setting up libpcre2-dev:amd64 (10.46-1) ...
177s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
177s Setting up libreadline-dev:amd64 (8.3-3) ...
177s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
177s Setting up gcc-15 (15.2.0-12ubuntu1) ...
177s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
177s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
177s Setting up cpp (4:15.2.0-4ubuntu1) ...
177s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ...
177s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
177s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
177s Setting up libpng-dev:amd64 (1.6.54-1) ...
177s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ...
177s Setting up gcc (4:15.2.0-4ubuntu1) ...
177s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
177s Setting up g++-15 (15.2.0-12ubuntu1) ...
177s Setting up gfortran (4:15.2.0-4ubuntu1) ...
177s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
177s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
177s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
177s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
177s Setting up g++ (4:15.2.0-4ubuntu1) ...
177s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
177s Setting up build-essential (12.12ubuntu2) ...
177s Setting up r-base-dev (4.5.2-1ubuntu2) ...
177s Setting up pkg-r-autopkgtest (20250812) ...
177s Processing triggers for libc-bin (2.42-2ubuntu4) ...
177s Processing triggers for man-db (2.13.1-1build1) ...
178s Processing triggers for install-info (7.2-5) ...
180s autopkgtest [05:52:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
180s autopkgtest [05:52:25]: test pkg-r-autopkgtest: [-----------------------
180s Test: Try to load the R library sctransform
180s 
180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
180s Copyright (C) 2025 The R Foundation for Statistical Computing
180s Platform: x86_64-pc-linux-gnu
180s 
180s R is free software and comes with ABSOLUTELY NO WARRANTY.
180s You are welcome to redistribute it under certain conditions.
180s Type 'license()' or 'licence()' for distribution details.
180s 
180s R is a collaborative project with many contributors.
180s Type 'contributors()' for more information and
180s 'citation()' on how to cite R or R packages in publications.
180s 
180s Type 'demo()' for some demos, 'help()' for on-line help, or
180s 'help.start()' for an HTML browser interface to help.
180s Type 'q()' to quit R.
180s 
180s > library('sctransform')
181s > 
182s autopkgtest [05:52:27]: test pkg-r-autopkgtest: -----------------------]
182s autopkgtest [05:52:27]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
182s pkg-r-autopkgtest    PASS
182s autopkgtest [05:52:27]: @@@@@@@@@@@@@@@@@@@@ summary
182s run-unit-test        PASS
182s pkg-r-autopkgtest    PASS