0s autopkgtest [03:09:36]: starting date and time: 2026-02-10 03:09:36+0000 0s autopkgtest [03:09:36]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:09:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jzpgynju/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-hexbin --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-7.secgroup --name adt-resolute-amd64-r-cran-hexbin-20260210-030936-juju-7f2275-prod-proposed-migration-environment-2-163edbaa-e936-4252-ae75-e3dd43f19e74 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-r-cran-hexbin-20260210-030936-juju-7f2275-prod-proposed-migration-environment-2-163edbaa-e936-4252-ae75-e3dd43f19e74 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 72s autopkgtest [03:10:48]: testbed dpkg architecture: amd64 72s autopkgtest [03:10:48]: testbed apt version: 3.1.14 72s autopkgtest [03:10:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 73s autopkgtest [03:10:49]: testbed release detected to be: None 73s autopkgtest [03:10:49]: updating testbed package index (apt update) 73s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 73s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 73s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 73s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB] 74s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB] 74s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB] 74s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB] 74s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB] 74s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B] 74s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 74s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB] 74s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB] 74s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB] 74s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B] 74s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB] 74s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 75s Fetched 5189 kB in 1s (4886 kB/s) 76s Reading package lists... 76s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 77s Reading package lists... 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 78s The following package was automatically installed and is no longer required: 78s libpython3.13 78s Use 'sudo apt autoremove' to remove it. 78s The following NEW packages will be installed: 78s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 78s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 78s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 78s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 78s The following packages will be upgraded: 78s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 78s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 78s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 78s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 78s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 78s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 78s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 78s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 78s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 78s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 78s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 78s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 78s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 78s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 78s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 78s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 78s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 237 MB of archives. 78s After this operation, 339 MB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 79s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 79s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 79s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 79s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 79s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 79s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 79s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 79s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 79s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 79s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 79s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 79s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 79s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 79s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 79s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 79s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 79s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 79s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 79s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 79s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 79s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 79s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 79s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 79s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 79s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 79s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 79s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 79s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 79s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 79s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 79s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 79s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 79s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 79s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 79s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 79s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 79s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 79s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 79s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 79s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 79s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 79s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 79s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 79s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 79s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 79s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 83s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 83s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 83s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 83s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 83s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 83s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 83s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 83s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 83s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 83s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 84s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 84s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 84s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 84s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 84s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 84s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 84s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 84s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 84s dpkg-preconfigure: unable to re-open stdin: No such file or directory 84s Fetched 237 MB in 5s (43.2 MB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 84s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 84s Setting up debianutils (5.23.2build1) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 84s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 84s Setting up dash (0.5.12-12ubuntu3) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 84s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 84s Setting up findutils (4.10.0-3build2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 85s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 85s Setting up sed (4.9-2build3) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 85s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 85s Setting up tar (1.35+dfsg-3.1build2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 85s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 85s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 85s Selecting previously unselected package gcc-16-base:amd64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 85s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 85s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 85s (Reading database ... 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(7.7.0+6.19.0-3.3) ... 93s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 93s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 93s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 93s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 93s Setting up libsensors-config (1:3.6.2-2build1) ... 93s Setting up less (668-1build1) ... 93s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 93s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 93s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 93s amd64-microcode: microcode will be updated at next boot 93s Setting up man-db (2.13.1-1build1) ... 94s Updating database of manual pages ... 95s man-db.service is a disabled or a static unit not running, not starting it. 95s Setting up libjansson4:amd64 (2.14-2build4) ... 95s Setting up libglib2.0-data (2.87.2-2) ... 95s Setting up pollinate (4.33-4ubuntu5) ... 106s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 106s Setting up libwrap0:amd64 (7.6.q-36build2) ... 106s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 107s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 107s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 107s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 107s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 107s Setting up patch (2.8-2build1) ... 107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 107s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 107s Setting up lsof (4.99.4+dfsg-2build2) ... 107s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 107s Setting up dracut-install (109-11ubuntu1) ... 107s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 107s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 107s Setting up pnp.ids (0.394-1build1) ... 107s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 107s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 107s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 107s Setting up mawk (1.3.4.20260129-1) ... 107s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 107s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 107s Setting up linux-image-virtual (6.19.0-3.3) ... 107s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 107s Setting up libbsd0:amd64 (0.12.2-2build2) ... 107s Setting up libdrm-common (2.4.131-1) ... 107s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 107s Setting up dbus-bin (1.16.2-2ubuntu3) ... 107s Setting up libonig5:amd64 (6.9.10-1build1) ... 107s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 107s Setting up ethtool (1:6.15-3build1) ... 107s Setting up python3-referencing (0.36.2-1ubuntu2) ... 107s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 107s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 107s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 107s Setting up tcpdump (4.99.5-2ubuntu3) ... 107s Setting up linux-image-generic (6.19.0-3.3) ... 107s Setting up wget (1.25.0-2ubuntu4) ... 107s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 107s Setting up iptables (1.8.11-2ubuntu3) ... 107s Setting up iproute2 (6.18.0-1ubuntu1) ... 107s Setting up linux-headers-generic (6.19.0-3.3) ... 107s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 107s Setting up hwdata (0.394-1build1) ... 107s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 107s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 107s No schema files found: doing nothing. 107s Setting up dbus (1.16.2-2ubuntu3) ... 107s A reboot is required to replace the running dbus-daemon. 107s Please reboot the system when convenient. 108s Setting up shared-mime-info (2.4-5build3) ... 108s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 108s Setting up pciutils (1:3.14.0-1build2) ... 108s Setting up python3-markdown-it (3.0.0-3build1) ... 108s Setting up libdrm2:amd64 (2.4.131-1) ... 108s Setting up libpython3.14:amd64 (3.14.2-1) ... 108s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 108s Setting up linux-tools-common (6.19.0-3.3) ... 108s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 108s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 108s Setting up apt (3.1.15) ... 109s Setting up linux-headers-virtual (6.19.0-3.3) ... 109s Setting up linux-generic (6.19.0-3.3) ... 109s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 109s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 109s Setting up ubuntu-standard (1.564) ... 109s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 109s Setting up linux-virtual (6.19.0-3.3) ... 109s Setting up linux-perf (6.19.0-3.3) ... 109s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 109s Processing triggers for debianutils (5.23.2build1) ... 109s Processing triggers for install-info (7.2-5) ... 109s Processing triggers for initramfs-tools (0.150ubuntu7) ... 109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 113s Processing triggers for libc-bin (2.42-2ubuntu4) ... 113s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 113s /etc/kernel/postinst.d/initramfs-tools: 113s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 117s /etc/kernel/postinst.d/zz-update-grub: 117s Sourcing file `/etc/default/grub' 117s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 117s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 117s Generating grub configuration file ... 118s Found linux image: /boot/vmlinuz-6.19.0-3-generic 118s Found initrd image: /boot/initrd.img-6.19.0-3-generic 118s Found linux image: /boot/vmlinuz-6.18.0-9-generic 118s Found initrd image: /boot/initrd.img-6.18.0-9-generic 118s Warning: os-prober will not be executed to detect other bootable partitions. 118s Systems on them will not be added to the GRUB boot configuration. 118s Check GRUB_DISABLE_OS_PROBER documentation entry. 118s Adding boot menu entry for UEFI Firmware Settings ... 118s done 118s autopkgtest [03:11:34]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s The following package was automatically installed and is no longer required: 119s libpython3.13 119s Use 'sudo apt autoremove' to remove it. 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Solving dependencies... 119s The following packages will be REMOVED: 119s libpython3.13* 119s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 119s After this operation, 7599 kB disk space will be freed. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 120s Removing libpython3.13:amd64 (3.13.11-1) ... 120s Processing triggers for libc-bin (2.42-2ubuntu4) ... 120s autopkgtest [03:11:36]: rebooting testbed after setup commands that affected boot 148s autopkgtest [03:12:04]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 151s autopkgtest [03:12:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-hexbin 152s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (dsc) [2156 B] 152s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (tar) [1195 kB] 152s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (diff) [3108 B] 152s gpgv: Signature made Tue Jan 28 00:21:54 2025 UTC 152s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 152s gpgv: issuer "plessy@debian.org" 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./r-cran-hexbin_1.28.5-1.dsc: no acceptable signature found 152s autopkgtest [03:12:08]: testing package r-cran-hexbin version 1.28.5-1 153s autopkgtest [03:12:09]: build not needed 161s autopkgtest [03:12:17]: test run-unit-test: preparing testbed 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Solving dependencies... 161s The following NEW packages will be installed: 161s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 161s fonts-glyphicons-halflings fonts-mathjax libblas3 libc-dev-bin libc6-dev 161s libcairo2 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgfortran5 161s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 161s libjpeg8 libjs-bootstrap libjs-highlight.js libjs-jquery 161s libjs-jquery-datatables libjs-mathjax liblapack3 liblerc4 libpango-1.0-0 161s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 161s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 161s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 161s linux-libc-dev node-normalize.css r-base-core r-bioc-affy r-bioc-affyio 161s r-bioc-biobase r-bioc-biocgenerics r-bioc-limma r-bioc-preprocesscore 161s r-bioc-zlibbioc r-cran-biocmanager r-cran-evaluate r-cran-hexbin 161s r-cran-highr r-cran-knitr r-cran-lattice r-cran-statmod r-cran-xfun 161s r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 162s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 66.8 MB of archives. 162s After this operation, 176 MB of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 162s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 162s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 162s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 162s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 162s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 162s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 162s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 162s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 162s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 162s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 162s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 162s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 162s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 162s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 162s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 162s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 162s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 162s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 162s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 162s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 162s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 162s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 162s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 162s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 162s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 162s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 162s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 162s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 162s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 162s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 162s Get:32 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 162s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 162s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 162s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 162s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 162s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 162s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 162s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 162s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 162s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 162s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 162s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 162s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 162s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 162s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 162s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 162s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 162s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 162s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 162s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 162s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 162s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 162s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 162s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 162s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 163s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 163s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 163s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 163s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 163s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-affyio amd64 1.76.0-2 [97.6 kB] 163s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 163s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-preprocesscore amd64 1.68.0+ds-2 [174 kB] 163s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-affy amd64 1.84.0-2 [2021 kB] 163s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 163s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 163s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 163s Get:68 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB] 163s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hexbin amd64 1.28.5-1 [1581 kB] 163s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 163s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 163s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 164s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 164s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 164s Preconfiguring packages ... 164s Fetched 66.8 MB in 2s (30.5 MB/s) 164s Selecting previously unselected package fonts-dejavu-mono. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 164s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8build1_all.deb ... 164s Unpacking fonts-dejavu-mono (2.37-8build1) ... 164s Selecting previously unselected package fonts-dejavu-core. 164s Preparing to unpack .../01-fonts-dejavu-core_2.37-8build1_all.deb ... 164s Unpacking fonts-dejavu-core (2.37-8build1) ... 164s Selecting previously unselected package fontconfig-config. 164s Preparing to unpack .../02-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 164s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 164s Selecting previously unselected package libfontconfig1:amd64. 164s Preparing to unpack .../03-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 164s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 164s Selecting previously unselected package fontconfig. 164s Preparing to unpack .../04-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 164s Unpacking fontconfig (2.17.1-3ubuntu1) ... 164s Selecting previously unselected package fonts-glyphicons-halflings. 164s Preparing to unpack .../05-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 164s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 164s Selecting previously unselected package fonts-mathjax. 164s Preparing to unpack .../06-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 164s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 164s Selecting previously unselected package libblas3:amd64. 164s Preparing to unpack .../07-libblas3_3.12.1-7ubuntu1_amd64.deb ... 164s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 164s Selecting previously unselected package libc-dev-bin. 164s Preparing to unpack .../08-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 164s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 164s Selecting previously unselected package linux-libc-dev:amd64. 164s Preparing to unpack .../09-linux-libc-dev_6.19.0-3.3_amd64.deb ... 164s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 164s Selecting previously unselected package libcrypt-dev:amd64. 164s Preparing to unpack .../10-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 164s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 164s Selecting previously unselected package rpcsvc-proto. 164s Preparing to unpack .../11-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 164s Unpacking rpcsvc-proto (1.4.3-1build1) ... 164s Selecting previously unselected package libc6-dev:amd64. 164s Preparing to unpack .../12-libc6-dev_2.42-2ubuntu4_amd64.deb ... 164s Unpacking libc6-dev:amd64 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r-cran-lattice (0.22-9-1) ... 169s Setting up r-cran-hexbin (1.28.5-1) ... 169s Setting up r-cran-statmod (1.5.0-1) ... 169s Setting up r-bioc-biocgenerics (0.52.0-2) ... 169s Setting up r-cran-xfun (0.55+dfsg-1) ... 169s Setting up r-cran-yaml (2.3.10-1) ... 169s Setting up r-cran-evaluate (1.0.5-1) ... 169s Setting up r-cran-highr (0.11+dfsg-1) ... 169s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 169s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 169s Setting up r-bioc-biobase (2.66.0-2) ... 169s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 169s Setting up r-cran-knitr (1.51+dfsg-1) ... 169s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 169s Setting up r-bioc-affyio (1.76.0-2) ... 169s Setting up r-bioc-affy (1.84.0-2) ... 169s Processing triggers for libc-bin (2.42-2ubuntu4) ... 169s Processing triggers for man-db (2.13.1-1build1) ... 169s Processing triggers for install-info (7.2-5) ... 170s autopkgtest [03:12:26]: test run-unit-test: [----------------------- 170s BEGIN TEST hdiffplot.R 170s 170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > library(hexbin) 170s > 170s > if(R.version$major != "1" || as.numeric(R.version$minor) >= 7) 170s + RNGversion("1.6") 170s > set.seed(213) 170s Warning messages: 170s 1: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 170s buggy version of Kinderman-Ramage generator used 170s 2: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 170s non-uniform 'Rounding' sampler used 170s 3: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 170s RNGkind: Marsaglia-Multicarry has poor statistical properties 170s > x1 <- rnorm(10000) 170s > y1 <- rnorm(10000) 170s > 170s > x2 <- rnorm(10000,mean = .3) 170s > y2 <- rnorm(10000,mean = .3) 170s > 170s > rx <- range(x1,x2) 170s > ry <- range(y1,y2) 170s > 170s > str(bin1 <- hexbin(x1,y1, xbnds = rx, ybnds = ry)) 170s Formal class 'hexbin' [package "hexbin"] with 16 slots 170s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 170s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 170s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 170s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 170s ..@ xbins : num 30 170s ..@ shape : num 1 170s ..@ xbnds : num [1:2] -3.8 4.3 170s ..@ ybnds : num [1:2] -3.71 4.17 170s ..@ dimen : num [1:2] 36 31 170s ..@ n : int 10000 170s ..@ ncells: int 535 170s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 170s ..@ xlab : chr "x1" 170s ..@ ylab : chr "y1" 170s ..@ cID : NULL 170s ..@ cAtt : int(0) 170s > str(bin2 <- hexbin(x2,y2, xbnds = rx, ybnds = ry)) 170s Formal class 'hexbin' [package "hexbin"] with 16 slots 170s ..@ cell : int [1:545] 41 51 75 76 104 107 110 114 136 138 ... 170s ..@ count : int [1:545] 1 1 1 1 1 2 1 1 2 1 ... 170s ..@ xcm : num [1:545] -1.141 1.445 -0.493 -0.324 -0.995 ... 170s ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ... 170s ..@ xbins : num 30 170s ..@ shape : num 1 170s ..@ xbnds : num [1:2] -3.8 4.3 170s ..@ ybnds : num [1:2] -3.71 4.17 170s ..@ dimen : num [1:2] 36 31 170s ..@ n : int 10000 170s ..@ ncells: int 545 170s ..@ call : language hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 170s ..@ xlab : chr "x2" 170s ..@ ylab : chr "y2" 170s ..@ cID : NULL 170s ..@ cAtt : int(0) 170s > 170s > str(erode(bin1)) 170s Formal class 'erodebin' [package "hexbin"] with 19 slots 170s ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ... 170s ..@ cdfcut: num 0.5 170s ..@ erode : int [1:71] 12 35 34 57 52 4 30 101 138 150 ... 170s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 170s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 170s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 170s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 170s ..@ xbins : num 30 170s ..@ shape : num 1 170s ..@ xbnds : num [1:2] -3.8 4.3 170s ..@ ybnds : num [1:2] -3.71 4.17 170s ..@ dimen : num [1:2] 36 31 170s ..@ n : int 10000 170s ..@ ncells: int 535 170s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 170s ..@ xlab : chr "x1" 170s ..@ ylab : chr "y1" 170s ..@ cID : NULL 170s ..@ cAtt : int(0) 170s > 170s > str(smbin1 <- smooth.hexbin(bin1)) 170s Formal class 'smoothbin' [package "hexbin"] with 17 slots 170s ..@ wts : num [1:3] 48 4 1 170s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 170s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 170s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 170s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 170s ..@ xbins : num 34 170s ..@ shape : num 1 170s ..@ xbnds : num [1:2] -4.34 4.84 170s ..@ ybnds : num [1:2] -4.23 4.7 170s ..@ dimen : num [1:2] 40 35 170s ..@ n : int 10000 170s ..@ ncells: int 535 170s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 170s ..@ xlab : chr "x1" 170s ..@ ylab : chr "y1" 170s ..@ cID : NULL 170s ..@ cAtt : int(0) 170s > (smbin2 <- smooth.hexbin(bin2)) 170s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 170s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 170s > 170s > str(erodebin1 <- erode.hexbin(smbin1)) 170s Formal class 'erodebin' [package "hexbin"] with 19 slots 170s ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ... 170s ..@ cdfcut: num 0.5 170s ..@ erode : int [1:73] 11 35 95 100 117 88 6 39 167 232 ... 170s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 170s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 170s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 170s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 170s ..@ xbins : num 34 170s ..@ shape : num 1 170s ..@ xbnds : num [1:2] -4.34 4.84 170s ..@ ybnds : num [1:2] -4.23 4.7 170s ..@ dimen : num [1:2] 40 35 170s ..@ n : int 10000 170s ..@ ncells: int 535 170s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 170s ..@ xlab : chr "x1" 170s ..@ ylab : chr "y1" 170s ..@ cID : NULL 170s ..@ cAtt : int(0) 170s > (erodebin2 <- erode.hexbin(smbin2)) 170s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 170s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 170s > 170s > if(FALSE)## does not work -- what funny stuff is hdiffplot() doing??? 170s + par(mfrow = c(2,1)) 170s > 170s > if(exists("hdiffplot", mode="function")) { ## not yet in new hexbin 170s + hdiffplot(bin1,bin2, main = "Original N(0,*) Random bins") 170s + 170s + hdiffplot(smbin1,smbin2, main = "smooth.hexbin() smoothed bins") 170s + 170s + plot.new() 170s + hdiffplot(erodebin1,erodebin2, main = "erode.hexbin()d smoothed bins") 170s + }# not yet 171s > 171s BEGIN TEST hray.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > library(hexbin) 171s > 171s > set.seed(572) 171s > 171s > x <- rnorm(100) 171s > y <- rnorm(100) 171s > val <- rnorm(100) 171s > inc <- abs(rnorm(100,sd = .3)) 171s > loB <- val-inc 171s > hiB <- val+inc 171s > 171s > if(exists("hray", mode="function")) { # 'real soon now' 171s + 171s + ## no confidence bounds 171s + plot(x,y,type = 'n') 171s + hray(x,y,val) 171s + 171s + ## confidence bounds 171s + plot(x,y,type = 'n') 171s + hray(x,y,val, lo = loB, hi = hiB) 171s + 171s + ## clockwise orientation 171s + plot(x,y,type = 'n') 171s + hray(x,y,val, loB, hiB, clockwise = TRUE) 171s + 171s + ## no tics and small filled dots 171s + plot(x,y,type = 'n') 171s + hray(x,y,val, loB, hiB, ticlength = FALSE, 171s + dotside = 20, dotlength = .025, dotden = -1) 171s + 171s + } 171s > 171s BEGIN TEST large.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > library(hexbin) 171s > 171s > if(FALSE) { ## the following is still quite a bit from working/useful : 171s + 171s + ## what should that do? set a palette? 171s + rgb <- matrix(c( 171s + 15,15,15, 171s + 171s + 0, 0, 0, 171s + 1, 9,15, 171s + 9,15, 9, 171s + 15, 9, 9, 171s + 171s + 0, 0, 0, 171s + 0, 0, 0, 171s + 0, 0, 0, 171s + 0, 0, 0, 171s + 0, 0, 0, 171s + 0, 0, 0, 171s + 171s + 9, 9, 9, 171s + 0, 2, 7, 171s + 0, 7, 1, 171s + 8, 1, 1, 171s + 171s + 15, 2, 2, 171s + 11, 1, 1, 171s + 8, 1, 1, 171s + 5, 1, 1, 171s + 5, 1, 1, 171s + 15,15,15), ncol = 3, byrow = TRUE) 171s + 171s + ##ps.options(rasters=600,color=rgb/15,background=2) 171s + ##ps.options(color=rgb/15,background=2) 171s + postscript("large.ps",width = 10,height = 7.5) 171s + 171s + plot.hexbin(ans.25mil, style = "nest", lcex = .9) 171s + 171s + }## FALSE, i.e. nothing done 171s > 171s BEGIN TEST viewp-ex.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > library(hexbin) 171s > 171s > ## a variation on Nicholas' post to bioconductor & example(hexViewport) 171s > set.seed(545) 171s > x <- rnorm(2^15) 171s > y <- 3*x - .2*x^2 + rnorm(2^15) 171s > hbin <- hexbin(x,y) 171s > 171s > ## 171s > hp <- hexViewport(hbin, newpage = TRUE) 171s > pushHexport(hp) 171s > library("grid") 171s > grid.rect() 171s > grid.xaxis() 171s > grid.yaxis() 171s > grid.hexagons(hbin, style = "centroid") 171s > hloess <- loess(y ~ x, data = hcell2xy(hbin), weights = hbin @ count) 171s > xx <- seq(hbin@xbnds[1], hbin@xbnds[2], length = 500) 171s > grid.lines(xx, predict(hloess, xx), 171s + gp = gpar(col = 'red', lwd = 2), default.units = "native") 171s > popViewport() 171s > 171s autopkgtest [03:12:27]: test run-unit-test: -----------------------] 172s run-unit-test PASS 172s autopkgtest [03:12:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 172s autopkgtest [03:12:28]: test pkg-r-autopkgtest: preparing testbed 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Solving dependencies... 173s The following NEW packages will be installed: 173s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 173s dctrl-tools g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 173s gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 173s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 173s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-15-dev 173s libgfortran-15-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 173s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 173s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 173s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-15-dev 173s libtirpc-dev libtsan2 libubsan1 libzstd-dev pkg-r-autopkgtest pkgconf 173s pkgconf-bin r-base-dev 173s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 107 MB of archives. 173s After this operation, 378 MB of additional disk space will be used. 173s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 173s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 173s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 173s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 173s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 173s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 173s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 173s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 173s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 173s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 174s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 174s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 174s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 174s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 174s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 174s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 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resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 176s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 176s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 176s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 176s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 176s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 176s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 176s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 176s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 176s Get:34 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http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 177s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 177s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 177s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 177s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 177s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 177s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 177s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 177s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 177s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 177s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 177s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 177s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 177s Fetched 107 MB in 4s (24.4 MB/s) 177s Selecting previously unselected package libisl23:amd64. 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 134885 files and directories currently installed.) 177s Preparing to unpack .../00-libisl23_0.27-1build1_amd64.deb ... 177s Unpacking libisl23:amd64 (0.27-1build1) ... 177s Selecting previously unselected package libmpc3:amd64. 177s Preparing to unpack .../01-libmpc3_1.3.1-2_amd64.deb ... 177s Unpacking libmpc3:amd64 (1.3.1-2) ... 177s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 177s Preparing to unpack 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libhwasan0:amd64 (16-20260208-1ubuntu1) ... 178s Selecting previously unselected package libquadmath0:amd64. 178s Preparing to unpack .../13-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 178s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 178s Selecting previously unselected package libgcc-15-dev:amd64. 178s Preparing to unpack .../14-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 178s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 178s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 178s Preparing to unpack .../15-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 178s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 178s Selecting previously unselected package gcc-15. 178s Preparing to unpack .../16-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 178s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 178s Selecting previously unselected package gcc-x86-64-linux-gnu. 178s Preparing to unpack .../17-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 178s 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g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 178s Selecting previously unselected package g++. 178s Preparing to unpack .../23-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 178s Unpacking g++ (4:15.2.0-4ubuntu1) ... 178s Selecting previously unselected package build-essential. 178s Preparing to unpack .../24-build-essential_12.12ubuntu2_amd64.deb ... 178s Unpacking build-essential (12.12ubuntu2) ... 178s Selecting previously unselected package dctrl-tools. 178s Preparing to unpack .../25-dctrl-tools_2.24-3build4_amd64.deb ... 178s Unpacking dctrl-tools (2.24-3build4) ... 178s Selecting previously unselected package libgfortran-15-dev:amd64. 178s Preparing to unpack .../26-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 178s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 178s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 178s Preparing to unpack .../27-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 178s Unpacking gfortran-15-x86-64-linux-gnu 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previously unselected package libbz2-dev:amd64. 178s Preparing to unpack .../33-libbz2-dev_1.0.8-6build2_amd64.deb ... 178s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 178s Selecting previously unselected package libdeflate-dev:amd64. 178s Preparing to unpack .../34-libdeflate-dev_1.23-2build1_amd64.deb ... 178s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 178s Selecting previously unselected package libicu-dev:amd64. 178s Preparing to unpack .../35-libicu-dev_78.2-1ubuntu1_amd64.deb ... 178s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 179s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 179s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ... 179s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 179s Selecting previously unselected package libjpeg8-dev:amd64. 179s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu12_amd64.deb ... 179s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ... 179s Selecting previously unselected package libjpeg-dev:amd64. 179s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu12_amd64.deb ... 179s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ... 179s Selecting previously unselected package liblapack-dev:amd64. 179s Preparing to unpack .../39-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 179s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 179s Selecting previously unselected package libncurses-dev:amd64. 179s Preparing to unpack .../40-libncurses-dev_6.6+20251231-1_amd64.deb ... 179s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 179s Selecting previously unselected package libpcre2-16-0:amd64. 179s Preparing to unpack .../41-libpcre2-16-0_10.46-1_amd64.deb ... 179s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 179s Selecting previously unselected package libpcre2-32-0:amd64. 179s Preparing to unpack .../42-libpcre2-32-0_10.46-1_amd64.deb ... 179s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 179s Selecting previously unselected package libpcre2-posix3:amd64. 179s Preparing to unpack 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.../54-pkg-r-autopkgtest_20250812_all.deb ... 179s Unpacking pkg-r-autopkgtest (20250812) ... 179s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 179s Setting up libncurses-dev:amd64 (6.6+20251231-1) ... 179s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ... 179s Setting up libpng-dev:amd64 (1.6.54-1) ... 179s Setting up libreadline-dev:amd64 (8.3-3) ... 179s Setting up libpcre2-16-0:amd64 (10.46-1) ... 179s Setting up libpcre2-32-0:amd64 (10.46-1) ... 179s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... 179s Setting up libpkgconf3:amd64 (1.8.1-4build1) ... 179s Setting up libquadmath0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libmpc3:amd64 (1.3.1-2) ... 179s Setting up icu-devtools (78.2-1ubuntu1) ... 179s Setting up pkgconf-bin (1.8.1-4build1) ... 179s Setting up liblzma-dev:amd64 (5.8.2-2) ... 179s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libpcre2-posix3:amd64 (10.46-1) ... 179s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libasan8:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ... 179s Setting up libisl23:amd64 (0.27-1build1) ... 179s Setting up libdeflate-dev:amd64 (1.23-2build1) ... 179s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ... 179s Setting up libcc1-0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up liblsan0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 179s Setting up dctrl-tools (2.24-3build4) ... 179s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libbz2-dev:amd64 (1.0.8-6build2) ... 179s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 179s Setting up libpcre2-dev:amd64 (10.46-1) ... 179s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ... 179s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 179s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 179s Setting up pkgconf:amd64 (1.8.1-4build1) ... 179s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 179s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 179s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 179s Setting up cpp-15 (15.2.0-12ubuntu1) ... 179s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 179s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 179s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 179s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 179s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 179s Setting up gcc-15 (15.2.0-12ubuntu1) ... 179s Setting up cpp (4:15.2.0-4ubuntu1) ... 179s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 179s Setting up g++-15 (15.2.0-12ubuntu1) ... 179s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 179s Setting up gcc (4:15.2.0-4ubuntu1) ... 179s Setting up g++ (4:15.2.0-4ubuntu1) ... 179s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 179s Setting up build-essential (12.12ubuntu2) ... 179s Setting up gfortran (4:15.2.0-4ubuntu1) ... 179s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 179s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 179s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 179s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 179s Setting up r-base-dev (4.5.2-1ubuntu2) ... 179s Setting up pkg-r-autopkgtest (20250812) ... 179s Processing triggers for libc-bin (2.42-2ubuntu4) ... 179s Processing triggers for man-db (2.13.1-1build1) ... 180s Processing triggers for install-info (7.2-5) ... 180s autopkgtest [03:12:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 180s autopkgtest [03:12:36]: test pkg-r-autopkgtest: [----------------------- 181s Test: Try to load the R library hexbin 181s 181s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 181s Copyright (C) 2025 The R Foundation for Statistical Computing 181s Platform: x86_64-pc-linux-gnu 181s 181s R is free software and comes with ABSOLUTELY NO WARRANTY. 181s You are welcome to redistribute it under certain conditions. 181s Type 'license()' or 'licence()' for distribution details. 181s 181s R is a collaborative project with many contributors. 181s Type 'contributors()' for more information and 181s 'citation()' on how to cite R or R packages in publications. 181s 181s Type 'demo()' for some demos, 'help()' for on-line help, or 181s 'help.start()' for an HTML browser interface to help. 181s Type 'q()' to quit R. 181s 181s > library('hexbin') 181s > 181s autopkgtest [03:12:37]: test pkg-r-autopkgtest: -----------------------] 181s pkg-r-autopkgtest PASS 181s autopkgtest [03:12:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 182s autopkgtest [03:12:38]: @@@@@@@@@@@@@@@@@@@@ summary 182s run-unit-test PASS 182s pkg-r-autopkgtest PASS