0s autopkgtest [05:22:03]: starting date and time: 2026-02-10 05:22:03+0000
  0s autopkgtest [05:22:03]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [05:22:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1bcs3kqp/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-gunifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-16.secgroup --name adt-resolute-amd64-r-cran-gunifrac-20260210-052203-juju-7f2275-prod-proposed-migration-environment-2-7b8b3298-7006-4e22-aa87-054c3852929d --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  4s Creating nova instance adt-resolute-amd64-r-cran-gunifrac-20260210-052203-juju-7f2275-prod-proposed-migration-environment-2-7b8b3298-7006-4e22-aa87-054c3852929d from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 74s autopkgtest [05:23:17]: testbed dpkg architecture: amd64
 74s autopkgtest [05:23:17]: testbed apt version: 3.1.14
 75s autopkgtest [05:23:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [05:23:18]: testbed release detected to be: None
 75s autopkgtest [05:23:18]: updating testbed package index (apt update)
 76s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [178 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1727 kB]
 77s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [219 kB]
 77s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB]
 77s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6184 B]
 77s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 77s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [792 kB]
 77s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1787 kB]
 78s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.5 kB]
 78s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 78s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 78s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 78s Fetched 5197 kB in 2s (2244 kB/s)
 79s Reading package lists...
 80s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 80s Reading package lists...
 80s Reading package lists...
 80s Building dependency tree...
 80s Reading state information...
 80s Calculating upgrade...
 81s The following package was automatically installed and is no longer required:
 81s   libpython3.13
 81s Use 'sudo apt autoremove' to remove it.
 81s The following NEW packages will be installed:
 81s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 81s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 81s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 81s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 81s The following packages will be upgraded:
 81s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 81s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 81s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 81s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 81s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbrotli1 libbsd0
 81s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 81s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 81s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 81s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 81s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 81s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 81s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 81s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 81s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 81s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 81s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 81s 91 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 81s Need to get 237 MB of archives.
 81s After this operation, 339 MB of additional disk space will be used.
 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 81s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 81s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 81s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 81s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 81s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 81s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 81s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 81s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 81s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 81s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 81s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 81s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 81s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 81s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 81s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 81s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 81s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 81s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 81s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 81s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 81s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 81s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 81s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 81s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 81s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 81s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 81s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 81s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 81s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 81s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 81s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 81s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 81s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 81s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 81s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 81s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 81s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 81s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 81s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 81s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 81s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 81s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 81s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 81s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 81s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 81s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 81s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 81s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 81s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 81s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 81s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 81s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 81s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 81s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 81s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 81s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 81s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 81s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 81s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 81s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 81s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 81s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 81s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 81s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 81s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 81s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 81s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 81s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 81s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.2.0-3 [343 kB]
 81s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 81s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 81s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 81s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 81s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 81s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 82s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 82s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 82s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 82s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 82s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 86s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 87s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 87s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 87s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 87s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 87s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 87s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 87s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 87s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 87s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 87s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 87s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 87s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 87s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 87s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 87s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 87s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 87s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 88s Fetched 237 MB in 7s (35.4 MB/s)
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 88s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 88s Setting up debianutils (5.23.2build1) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 88s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 88s Setting up dash (0.5.12-12ubuntu3) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 88s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 88s Setting up findutils (4.10.0-3build2) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 88s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 88s Setting up sed (4.9-2build3) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 88s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 88s Setting up tar (1.35+dfsg-3.1build2) ...
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 96s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
 96s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
 96s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 96s amd64-microcode: microcode will be updated at next boot
 96s Setting up man-db (2.13.1-1build1) ...
 96s Updating database of manual pages ...
 97s man-db.service is a disabled or a static unit not running, not starting it.
 97s Setting up libjansson4:amd64 (2.14-2build4) ...
 97s Setting up libglib2.0-data (2.87.2-2) ...
 97s Setting up pollinate (4.33-4ubuntu5) ...
108s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
108s Setting up libwrap0:amd64 (7.6.q-36build2) ...
108s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
109s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
109s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
109s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
109s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
109s Setting up patch (2.8-2build1) ...
109s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
109s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
109s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
109s Setting up lsof (4.99.4+dfsg-2build2) ...
109s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
109s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
109s Setting up dracut-install (109-11ubuntu1) ...
109s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
109s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
109s Setting up pnp.ids (0.394-1build1) ...
109s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
109s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
109s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
109s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
109s Setting up mawk (1.3.4.20260129-1) ...
109s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
109s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
109s Setting up linux-image-virtual (6.19.0-3.3) ...
109s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
109s Setting up libbsd0:amd64 (0.12.2-2build2) ...
109s Setting up libdrm-common (2.4.131-1) ...
109s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
109s Setting up dbus-bin (1.16.2-2ubuntu3) ...
109s Setting up libonig5:amd64 (6.9.10-1build1) ...
109s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
109s Setting up ethtool (1:6.15-3build1) ...
109s Setting up python3-referencing (0.36.2-1ubuntu2) ...
109s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
109s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
109s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
109s Setting up tcpdump (4.99.5-2ubuntu3) ...
109s Setting up linux-image-generic (6.19.0-3.3) ...
109s Setting up wget (1.25.0-2ubuntu4) ...
109s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
109s Setting up iptables (1.8.11-2ubuntu3) ...
109s Setting up iproute2 (6.18.0-1ubuntu1) ...
109s Setting up linux-headers-generic (6.19.0-3.3) ...
109s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
109s Setting up hwdata (0.394-1build1) ...
109s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
109s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
109s No schema files found: doing nothing.
109s Setting up dbus (1.16.2-2ubuntu3) ...
109s A reboot is required to replace the running dbus-daemon.
109s Please reboot the system when convenient.
110s Setting up shared-mime-info (2.4-5build3) ...
110s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
110s Setting up pciutils (1:3.14.0-1build2) ...
110s Setting up python3-markdown-it (3.0.0-3build1) ...
110s Setting up libdrm2:amd64 (2.4.131-1) ...
110s Setting up libpython3.14:amd64 (3.14.2-1) ...
110s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
110s Setting up linux-tools-common (6.19.0-3.3) ...
110s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
110s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
110s Setting up apt (3.1.15) ...
111s Setting up linux-headers-virtual (6.19.0-3.3) ...
111s Setting up linux-generic (6.19.0-3.3) ...
111s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
111s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
111s Setting up ubuntu-standard (1.564) ...
111s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
111s Setting up linux-virtual (6.19.0-3.3) ...
111s Setting up linux-perf (6.19.0-3.3) ...
111s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
111s Processing triggers for debianutils (5.23.2build1) ...
111s Processing triggers for install-info (7.2-5) ...
111s Processing triggers for initramfs-tools (0.150ubuntu7) ...
111s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
115s Processing triggers for libc-bin (2.42-2ubuntu4) ...
115s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
115s /etc/kernel/postinst.d/initramfs-tools:
115s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
119s /etc/kernel/postinst.d/zz-update-grub:
119s Sourcing file `/etc/default/grub'
119s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
119s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
119s Generating grub configuration file ...
119s Found linux image: /boot/vmlinuz-6.19.0-3-generic
119s Found initrd image: /boot/initrd.img-6.19.0-3-generic
120s Found linux image: /boot/vmlinuz-6.18.0-9-generic
120s Found initrd image: /boot/initrd.img-6.18.0-9-generic
120s Warning: os-prober will not be executed to detect other bootable partitions.
120s Systems on them will not be added to the GRUB boot configuration.
120s Check GRUB_DISABLE_OS_PROBER documentation entry.
120s Adding boot menu entry for UEFI Firmware Settings ...
120s done
120s autopkgtest [05:24:03]: upgrading testbed (apt dist-upgrade and autopurge)
120s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s Calculating upgrade...
121s The following package was automatically installed and is no longer required:
121s   libpython3.13
121s Use 'sudo apt autoremove' to remove it.
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s Solving dependencies...
121s The following packages will be REMOVED:
121s   libpython3.13*
121s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
121s After this operation, 7599 kB disk space will be freed.
121s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
121s Removing libpython3.13:amd64 (3.13.11-1) ...
121s Processing triggers for libc-bin (2.42-2ubuntu4) ...
122s autopkgtest [05:24:05]: rebooting testbed after setup commands that affected boot
150s autopkgtest [05:24:33]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
152s autopkgtest [05:24:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gunifrac
153s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gunifrac 1.9+dfsg-2 (dsc) [2301 B]
153s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gunifrac 1.9+dfsg-2 (tar) [310 kB]
153s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gunifrac 1.9+dfsg-2 (diff) [2404 B]
153s gpgv: Signature made Sat Dec  6 21:43:26 2025 UTC
153s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
153s gpgv:                issuer "tille@debian.org"
153s gpgv: Can't check signature: No public key
153s dpkg-source: warning: cannot verify inline signature for ./r-cran-gunifrac_1.9+dfsg-2.dsc: no acceptable signature found
153s autopkgtest [05:24:36]: testing package r-cran-gunifrac version 1.9+dfsg-2
153s autopkgtest [05:24:36]: build not needed
155s autopkgtest [05:24:38]: test pkg-r-autopkgtest: preparing testbed
155s Reading package lists...
155s Building dependency tree...
155s Reading state information...
155s Solving dependencies...
155s The following NEW packages will be installed:
155s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
155s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
155s   fonts-glyphicons-halflings fonts-mathjax g++ g++-15 g++-15-x86-64-linux-gnu
155s   g++-x86-64-linux-gnu gcc gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu
155s   gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu
155s   icu-devtools libasan8 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev
155s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0
155s   libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1
155s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
155s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
155s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
155s   libjs-mathjax liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
155s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
155s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
155s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
155s   libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libtcl8.6 libthai-data
155s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7
155s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev
155s   linux-libc-dev node-normalize.css pkg-r-autopkgtest pkgconf pkgconf-bin
155s   r-base-core r-base-dev r-cran-ade4 r-cran-ape r-cran-cli r-cran-clue
155s   r-cran-cluster r-cran-codetools r-cran-commonmark r-cran-digest
155s   r-cran-dirmult r-cran-evaluate r-cran-farver r-cran-fbasics r-cran-foreach
155s   r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gss r-cran-gtable
155s   r-cran-gunifrac r-cran-highr r-cran-inline r-cran-isoband r-cran-iterators
155s   r-cran-knitr r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
155s   r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
155s   r-cran-modeest r-cran-nlme r-cran-permute r-cran-pixmap r-cran-pkgkitten
155s   r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang
155s   r-cran-rmutil r-cran-rpart r-cran-s7 r-cran-scales r-cran-sp r-cran-spatial
155s   r-cran-stable r-cran-stabledist r-cran-statip r-cran-statmod r-cran-survival
155s   r-cran-timedate r-cran-timeseries r-cran-vctrs r-cran-vegan
155s   r-cran-viridislite r-cran-withr r-cran-xfun r-cran-yaml rpcsvc-proto unzip
155s   x11-common xdg-utils zip zlib1g-dev
155s 0 upgraded, 175 newly installed, 0 to remove and 0 not upgraded.
155s Need to get 228 MB of archives.
155s After this operation, 646 MB of additional disk space will be used.
155s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
155s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
155s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
155s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
155s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
155s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
155s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
155s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
156s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
156s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
156s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
156s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
156s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
156s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
156s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
156s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
156s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
156s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
156s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
156s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
156s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
156s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
156s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
156s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
156s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
157s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
157s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
157s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
157s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
157s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
157s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
157s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
157s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
157s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
157s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
157s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
157s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
157s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
157s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
157s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
157s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
157s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
157s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
157s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
157s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
157s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
157s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
157s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
157s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
157s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
157s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
157s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
157s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
157s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
157s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
157s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
157s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
157s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
157s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
157s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
157s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
157s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
157s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
157s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
157s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
157s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
157s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
157s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
157s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
157s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
157s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
157s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
158s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
158s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
158s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
158s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
158s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
158s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
158s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
158s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
158s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
158s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
158s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
158s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
158s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
158s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
158s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
158s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
158s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
158s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
158s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
158s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
158s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
158s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
158s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
158s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
158s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
158s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
158s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
158s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
158s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
158s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
158s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
158s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
158s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
158s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
159s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
159s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
159s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
159s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
159s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
159s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
159s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
159s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pixmap all 0.4-14-1 [217 kB]
159s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
159s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
159s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
159s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
159s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
159s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
159s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ade4 amd64 1.7-23-1 [5414 kB]
159s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
159s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
159s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ape amd64 5.8-1-1 [2918 kB]
160s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
160s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB]
160s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB]
160s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
160s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
160s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dirmult all 0.1.3-5-1 [74.1 kB]
160s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
160s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
160s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-timedate amd64 4052.112-1 [1298 kB]
160s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-timeseries all 4052.112-1 [1981 kB]
160s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatial amd64 7.3-18-1 [137 kB]
160s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gss amd64 2.2-10-1 [1677 kB]
160s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stabledist all 0.7-2-1 [78.7 kB]
160s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fbasics amd64 4052.98-1 [1507 kB]
160s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-iterators all 1.0.14-1build1 [336 kB]
160s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreach all 1.5.2-1build1 [124 kB]
160s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
160s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
160s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
160s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
160s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
161s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
161s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
161s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
161s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
161s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
161s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
161s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
161s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
161s Get:154 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
161s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggrepel amd64 0.9.6-1 [270 kB]
161s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-permute all 0.9-8-1 [237 kB]
161s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
161s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB]
161s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vegan amd64 2.6-10+dfsg-3 [3137 kB]
162s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
162s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
162s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmutil amd64 1.1.10-1 [724 kB]
162s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stable amd64 1.1.6-1 [119 kB]
162s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB]
162s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB]
162s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statip amd64 0.2.3-2build1 [109 kB]
162s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-modeest all 2.4.0-2build1 [146 kB]
162s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-inline all 0.3.21-1 [131 kB]
162s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gunifrac amd64 1.9+dfsg-2 [508 kB]
162s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
162s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
162s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
162s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
163s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
163s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-markdown all 1.13-1 [162 kB]
163s Preconfiguring packages ...
163s Fetched 228 MB in 8s (29.6 MB/s)
163s Selecting previously unselected package libc-dev-bin.
163s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125269 files and directories currently installed.)
163s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
163s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
163s Selecting previously unselected package linux-libc-dev:amd64.
163s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
163s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
163s Selecting previously unselected package libcrypt-dev:amd64.
163s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
163s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
163s Selecting previously unselected package rpcsvc-proto.
163s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
163s Unpacking rpcsvc-proto (1.4.3-1build1) ...
163s Selecting previously unselected package libc6-dev:amd64.
163s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
163s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
163s Selecting previously unselected package libisl23:amd64.
163s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
163s Unpacking libisl23:amd64 (0.27-1build1) ...
163s Selecting previously unselected package libmpc3:amd64.
163s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
163s Unpacking libmpc3:amd64 (1.3.1-2) ...
163s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
163s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
163s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
163s Selecting previously unselected package cpp-15.
164s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package cpp-x86-64-linux-gnu.
164s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package cpp.
164s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking cpp (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package libcc1-0:amd64.
164s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libgomp1:amd64.
164s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libitm1:amd64.
164s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libasan8:amd64.
164s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package liblsan0:amd64.
164s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libtsan2:amd64.
164s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libubsan1:amd64.
164s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libhwasan0:amd64.
164s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libquadmath0:amd64.
164s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libgcc-15-dev:amd64.
164s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
164s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gcc-15.
164s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gcc-x86-64-linux-gnu.
164s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package gcc.
164s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking gcc (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package libstdc++-15-dev:amd64.
164s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package g++-15-x86-64-linux-gnu.
164s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package g++-15.
164s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking g++-15 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package g++-x86-64-linux-gnu.
164s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package g++.
164s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking g++ (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package build-essential.
164s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
164s Unpacking build-essential (12.12ubuntu2) ...
164s Selecting previously unselected package dctrl-tools.
164s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
164s Unpacking dctrl-tools (2.24-3build4) ...
164s Selecting previously unselected package fonts-dejavu-mono.
164s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
164s Unpacking fonts-dejavu-mono (2.37-8build1) ...
164s Selecting previously unselected package fonts-dejavu-core.
164s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
164s Unpacking fonts-dejavu-core (2.37-8build1) ...
164s Selecting previously unselected package fontconfig-config.
164s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
165s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
165s Selecting previously unselected package libfontconfig1:amd64.
165s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
165s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
165s Selecting previously unselected package fontconfig.
165s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
165s Unpacking fontconfig (2.17.1-3ubuntu1) ...
165s Selecting previously unselected package fonts-glyphicons-halflings.
165s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
165s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
165s Selecting previously unselected package fonts-mathjax.
165s Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
165s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
165s Selecting previously unselected package libgfortran5:amd64.
165s Preparing to unpack .../039-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
165s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
165s Selecting previously unselected package libgfortran-15-dev:amd64.
165s Preparing to unpack .../040-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
165s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
165s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
165s Preparing to unpack .../041-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
165s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
165s Selecting previously unselected package gfortran-15.
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167s Selecting previously unselected package r-cran-iterators.
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167s Selecting previously unselected package r-cran-foreach.
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167s Selecting previously unselected package r-cran-viridislite.
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167s Selecting previously unselected package r-cran-scales.
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167s Selecting previously unselected package r-cran-ggrepel.
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168s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
168s Setting up libpixman-1-0:amd64 (0.46.4-1) ...
168s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
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168s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ...
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168s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ...
168s Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
168s Setting up libgomp1:amd64 (16-20260208-1ubuntu1) ...
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168s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
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168s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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168s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ...
168s Setting up libjpeg8:amd64 (8c-2ubuntu12) ...
168s Setting up libice6:amd64 (2:1.1.1-1build1) ...
168s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ...
168s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
168s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
168s Setting up fontconfig-config (2.17.1-3ubuntu1) ...
168s Setting up libpaper-utils (2.2.5-0.3build1) ...
168s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
168s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
168s Setting up libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
168s Setting up pkgconf:amd64 (1.8.1-4build1) ...
168s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
168s Setting up libthai0:amd64 (0.1.30-1) ...
168s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
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168s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ...
168s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
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168s Setting up libbz2-dev:amd64 (1.0.8-6build2) ...
168s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
168s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
168s Setting up fontconfig (2.17.1-3ubuntu1) ...
170s Regenerating fonts cache... done.
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170s Setting up libxft2:amd64 (2.3.6-1build2) ...
170s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
170s Setting up libpcre2-dev:amd64 (10.46-1) ...
170s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Setting up libtk8.6:amd64 (8.6.17-1) ...
170s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
170s Setting up libreadline-dev:amd64 (8.3-3) ...
170s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Setting up libcairo2:amd64 (1.18.4-3) ...
170s Setting up gcc-15 (15.2.0-12ubuntu1) ...
170s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
170s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
170s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
170s Setting up cpp (4:15.2.0-4ubuntu1) ...
170s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
170s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ...
170s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
170s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
170s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
170s Setting up libpng-dev:amd64 (1.6.54-1) ...
170s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ...
170s Setting up gcc (4:15.2.0-4ubuntu1) ...
170s Setting up r-base-core (4.5.2-1ubuntu2) ...
171s Creating config file /etc/R/Renviron with new version
171s Setting up r-cran-labeling (0.4.3-1) ...
171s Setting up r-cran-lattice (0.22-7-1) ...
171s Setting up r-cran-nlme (3.1.168-1) ...
171s Setting up r-cran-farver (2.1.2-1) ...
171s Setting up r-cran-gss (2.2-10-1) ...
171s Setting up r-cran-viridislite (0.4.3-1) ...
171s Setting up r-cran-pixmap (0.4-14-1) ...
171s Setting up r-cran-cluster (2.1.8.2-1) ...
171s Setting up r-cran-statmod (1.5.0-1) ...
171s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
171s Setting up r-cran-commonmark (1.9.5-1) ...
171s Setting up r-cran-dirmult (0.1.3-5-1) ...
171s Setting up r-cran-r6 (2.6.1-1) ...
171s Setting up r-cran-pkgkitten (0.2.4-1) ...
171s Setting up g++-15 (15.2.0-12ubuntu1) ...
171s Setting up r-cran-littler (0.3.22-1) ...
171s Setting up r-cran-permute (0.9-8-1) ...
171s Setting up r-cran-rcpp (1.1.0-1) ...
171s Setting up r-cran-codetools (0.2-20-1build1) ...
171s Setting up r-cran-inline (0.3.21-1) ...
171s Setting up r-cran-rmutil (1.1.10-1) ...
171s Setting up r-cran-rlang (1.1.5-3) ...
171s Setting up r-cran-matrixstats (1.5.0-1) ...
171s Setting up r-cran-xfun (0.55+dfsg-1) ...
171s Setting up r-cran-withr (3.0.2+dfsg-1) ...
171s Setting up r-cran-iterators (1.0.14-1build1) ...
171s Setting up r-cran-spatial (7.3-18-1) ...
171s Setting up r-cran-digest (0.6.39-1) ...
171s Setting up r-cran-ape (5.8-1-1) ...
171s Setting up r-cran-yaml (2.3.10-1) ...
171s Setting up r-cran-evaluate (1.0.5-1) ...
171s Setting up r-cran-timedate (4052.112-1) ...
171s Setting up r-cran-highr (0.11+dfsg-1) ...
171s Setting up r-cran-foreach (1.5.2-1build1) ...
171s Setting up r-cran-mass (7.3-65-1) ...
171s Setting up r-cran-stable (1.1.6-1) ...
171s Setting up r-cran-glue (1.8.0-1) ...
171s Setting up r-cran-clue (0.3-66-1) ...
171s Setting up r-cran-cli (3.6.4-1) ...
171s Setting up gfortran (4:15.2.0-4ubuntu1) ...
171s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
171s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
171s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
171s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
171s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
171s Setting up r-cran-sp (1:2.2-0+dfsg-1) ...
171s Setting up r-cran-markdown (1.13-1) ...
171s Setting up r-cran-s7 (0.2.0-1) ...
171s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
171s Setting up r-cran-isoband (0.2.7-1) ...
171s Setting up r-cran-stabledist (0.7-2-1) ...
171s Setting up r-cran-scales (1.4.0-1) ...
171s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
171s Setting up r-cran-matrix (1.7-4-1) ...
171s Setting up r-cran-knitr (1.51+dfsg-1) ...
171s Setting up r-cran-mgcv (1.9-4-1) ...
171s Setting up g++ (4:15.2.0-4ubuntu1) ...
171s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
171s Setting up build-essential (12.12ubuntu2) ...
171s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ...
171s Setting up r-cran-vctrs (0.6.5-1) ...
171s Setting up r-base-dev (4.5.2-1ubuntu2) ...
171s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
171s Setting up r-cran-timeseries (4052.112-1) ...
171s Setting up r-cran-survival (3.8-6-1) ...
171s Setting up r-cran-ade4 (1.7-23-1) ...
171s Setting up r-cran-vegan (2.6-10+dfsg-3) ...
171s Setting up r-cran-ggrepel (0.9.6-1) ...
171s Setting up pkg-r-autopkgtest (20250812) ...
171s Setting up r-cran-fbasics (4052.98-1) ...
171s Setting up r-cran-rpart (4.1.24-1build1) ...
171s Setting up r-cran-statip (0.2.3-2build1) ...
171s Setting up r-cran-modeest (2.4.0-2build1) ...
171s Setting up r-cran-gunifrac (1.9+dfsg-2) ...
171s Processing triggers for libc-bin (2.42-2ubuntu4) ...
171s Processing triggers for man-db (2.13.1-1build1) ...
172s Processing triggers for install-info (7.2-5) ...
172s autopkgtest [05:24:55]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
172s autopkgtest [05:24:55]: test pkg-r-autopkgtest: [-----------------------
173s Test: Try to load the R library GUniFrac
173s 
173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
173s Copyright (C) 2025 The R Foundation for Statistical Computing
173s Platform: x86_64-pc-linux-gnu
173s 
173s R is free software and comes with ABSOLUTELY NO WARRANTY.
173s You are welcome to redistribute it under certain conditions.
173s Type 'license()' or 'licence()' for distribution details.
173s 
173s R is a collaborative project with many contributors.
173s Type 'contributors()' for more information and
173s 'citation()' on how to cite R or R packages in publications.
173s 
173s Type 'demo()' for some demos, 'help()' for on-line help, or
173s 'help.start()' for an HTML browser interface to help.
173s Type 'q()' to quit R.
173s 
173s > library('GUniFrac')
174s > 
174s autopkgtest [05:24:57]: test pkg-r-autopkgtest: -----------------------]
175s pkg-r-autopkgtest    PASS
175s autopkgtest [05:24:58]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
175s autopkgtest [05:24:58]: @@@@@@@@@@@@@@@@@@@@ summary
175s pkg-r-autopkgtest    PASS