0s autopkgtest [05:21:22]: starting date and time: 2026-02-10 05:21:22+0000 0s autopkgtest [05:21:22]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [05:21:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1fmb21g1/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-24.secgroup --name adt-resolute-amd64-r-cran-gstat-20260210-052122-juju-7f2275-prod-proposed-migration-environment-2-9ef81d34-e378-4392-8c01-b42c7c442096 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-r-cran-gstat-20260210-052122-juju-7f2275-prod-proposed-migration-environment-2-9ef81d34-e378-4392-8c01-b42c7c442096 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 157s autopkgtest [05:23:59]: testbed dpkg architecture: amd64 157s autopkgtest [05:23:59]: testbed apt version: 3.1.14 157s autopkgtest [05:23:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 157s autopkgtest [05:23:59]: testbed release detected to be: None 158s autopkgtest [05:24:00]: updating testbed package index (apt update) 158s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 158s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 158s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 158s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 158s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1727 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [178 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB] 159s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [219 kB] 159s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB] 159s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6184 B] 159s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 159s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [792 kB] 159s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1787 kB] 159s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.5 kB] 159s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B] 159s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB] 159s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 160s Fetched 5197 kB in 1s (3860 kB/s) 161s Reading package lists... 161s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 161s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 161s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 161s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 162s Reading package lists... 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 162s The following package was automatically installed and is no longer required: 162s libpython3.13 162s Use 'sudo apt autoremove' to remove it. 162s The following NEW packages will be installed: 162s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 162s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 162s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 162s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 162s The following packages will be upgraded: 162s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 162s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 162s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 162s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 162s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbrotli1 libbsd0 162s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 162s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 162s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 162s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 162s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 162s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 162s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 162s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 162s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 162s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 162s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 162s 91 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 237 MB of archives. 162s After this operation, 339 MB of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 162s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 162s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 162s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 162s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 162s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 162s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 162s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 162s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 162s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 162s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 162s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 163s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 163s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 163s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 163s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 163s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 163s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 163s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 163s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 163s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 163s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 163s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 163s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 163s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 163s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 163s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 163s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 163s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 163s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 163s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 163s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 163s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 163s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 163s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 163s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 163s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 163s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 163s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 163s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 163s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 163s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 163s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 163s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 163s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 163s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 163s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 163s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 163s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 163s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 163s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 163s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 163s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 163s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 163s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 163s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 163s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 163s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 163s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 163s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 163s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 163s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 163s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 163s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 163s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 163s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 163s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 163s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 163s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 163s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 163s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 163s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.2.0-3 [343 kB] 163s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 163s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 163s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 163s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 163s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 163s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 163s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 163s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 163s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 163s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 164s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 167s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 168s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 168s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 168s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 168s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 168s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 168s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 168s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 168s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 168s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 168s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 168s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 168s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 168s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 168s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 168s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 168s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 168s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 168s dpkg-preconfigure: unable to re-open stdin: No such file or directory 168s Fetched 237 MB in 6s (39.5 MB/s) 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 169s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 169s Setting up debianutils (5.23.2build1) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 169s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 169s Setting up dash (0.5.12-12ubuntu3) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 169s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 169s Setting up findutils (4.10.0-3build2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 169s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 169s Setting up sed (4.9-2build3) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 169s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 169s Setting up tar (1.35+dfsg-3.1build2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 169s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 169s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 169s Selecting previously unselected package gcc-16-base:amd64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 169s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 169s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 169s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 169s (Reading database ... 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175s Setting up ubuntu-kernel-accessories (1.564) ... 175s Setting up libgpm2:amd64 (1.20.7-12build1) ... 175s Setting up libgdbm6t64:amd64 (1.26-1build1) ... 175s Setting up linux-modules-6.19.0-3-generic (6.19.0-3.3) ... 177s Setting up libgdbm-compat4t64:amd64 (1.26-1build1) ... 177s Setting up bpftool (7.7.0+6.19.0-3.3) ... 177s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 177s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 177s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 177s Setting up libbrotli1:amd64 (1.2.0-3) ... 177s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 177s Setting up libsensors-config (1:3.6.2-2build1) ... 177s Setting up less (668-1build1) ... 177s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 177s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 177s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 177s amd64-microcode: microcode will be updated at next boot 177s Setting up man-db (2.13.1-1build1) ... 177s Updating database of manual pages ... 178s man-db.service is a disabled or a static unit not running, not starting it. 178s Setting up libjansson4:amd64 (2.14-2build4) ... 178s Setting up libglib2.0-data (2.87.2-2) ... 178s Setting up pollinate (4.33-4ubuntu5) ... 189s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 189s Setting up libwrap0:amd64 (7.6.q-36build2) ... 189s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 190s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 190s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 190s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 190s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 190s Setting up patch (2.8-2build1) ... 190s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 190s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 190s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 190s Setting up lsof (4.99.4+dfsg-2build2) ... 190s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 190s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 190s Setting up dracut-install (109-11ubuntu1) ... 190s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 190s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 190s Setting up pnp.ids (0.394-1build1) ... 190s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 190s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 190s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 190s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 190s Setting up mawk (1.3.4.20260129-1) ... 190s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 190s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 190s Setting up linux-image-virtual (6.19.0-3.3) ... 190s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 190s Setting up libbsd0:amd64 (0.12.2-2build2) ... 190s Setting up libdrm-common (2.4.131-1) ... 190s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 190s Setting up dbus-bin (1.16.2-2ubuntu3) ... 190s Setting up libonig5:amd64 (6.9.10-1build1) ... 190s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 190s Setting up ethtool (1:6.15-3build1) ... 190s Setting up python3-referencing (0.36.2-1ubuntu2) ... 190s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 190s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 190s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 190s Setting up tcpdump (4.99.5-2ubuntu3) ... 190s Setting up linux-image-generic (6.19.0-3.3) ... 190s Setting up wget (1.25.0-2ubuntu4) ... 190s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 190s Setting up iptables (1.8.11-2ubuntu3) ... 190s Setting up iproute2 (6.18.0-1ubuntu1) ... 190s Setting up linux-headers-generic (6.19.0-3.3) ... 190s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 190s Setting up hwdata (0.394-1build1) ... 190s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 190s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 190s No schema files found: doing nothing. 190s Setting up dbus (1.16.2-2ubuntu3) ... 190s A reboot is required to replace the running dbus-daemon. 190s Please reboot the system when convenient. 191s Setting up shared-mime-info (2.4-5build3) ... 191s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 191s Setting up pciutils (1:3.14.0-1build2) ... 191s Setting up python3-markdown-it (3.0.0-3build1) ... 192s Setting up libdrm2:amd64 (2.4.131-1) ... 192s Setting up libpython3.14:amd64 (3.14.2-1) ... 192s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 192s Setting up linux-tools-common (6.19.0-3.3) ... 192s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 192s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 192s Setting up apt (3.1.15) ... 192s Setting up linux-headers-virtual (6.19.0-3.3) ... 192s Setting up linux-generic (6.19.0-3.3) ... 192s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 192s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 192s Setting up ubuntu-standard (1.564) ... 192s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 192s Setting up linux-virtual (6.19.0-3.3) ... 192s Setting up linux-perf (6.19.0-3.3) ... 192s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 192s Processing triggers for debianutils (5.23.2build1) ... 192s Processing triggers for install-info (7.2-5) ... 192s Processing triggers for initramfs-tools (0.150ubuntu7) ... 192s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 197s Processing triggers for libc-bin (2.42-2ubuntu4) ... 197s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 197s /etc/kernel/postinst.d/initramfs-tools: 197s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 201s /etc/kernel/postinst.d/zz-update-grub: 201s Sourcing file `/etc/default/grub' 201s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 201s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 201s Generating grub configuration file ... 201s Found linux image: /boot/vmlinuz-6.19.0-3-generic 201s Found initrd image: /boot/initrd.img-6.19.0-3-generic 201s Found linux image: /boot/vmlinuz-6.18.0-9-generic 201s Found initrd image: /boot/initrd.img-6.18.0-9-generic 201s Warning: os-prober will not be executed to detect other bootable partitions. 201s Systems on them will not be added to the GRUB boot configuration. 201s Check GRUB_DISABLE_OS_PROBER documentation entry. 201s Adding boot menu entry for UEFI Firmware Settings ... 201s done 201s autopkgtest [05:24:43]: upgrading testbed (apt dist-upgrade and autopurge) 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Calculating upgrade... 202s The following package was automatically installed and is no longer required: 202s libpython3.13 202s Use 'sudo apt autoremove' to remove it. 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s Solving dependencies... 203s The following packages will be REMOVED: 203s libpython3.13* 203s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 203s After this operation, 7599 kB disk space will be freed. 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 203s Removing libpython3.13:amd64 (3.13.11-1) ... 203s Processing triggers for libc-bin (2.42-2ubuntu4) ... 203s autopkgtest [05:24:45]: rebooting testbed after setup commands that affected boot 232s autopkgtest [05:25:14]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 234s autopkgtest [05:25:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 235s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (dsc) [2319 B] 235s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (tar) [2283 kB] 235s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (diff) [3816 B] 235s gpgv: Signature made Wed Oct 15 12:45:30 2025 UTC 235s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 235s gpgv: issuer "tille@debian.org" 235s gpgv: Can't check signature: No public key 235s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-2.dsc: no acceptable signature found 235s autopkgtest [05:25:17]: testing package r-cran-gstat version 2.1-3-2 235s autopkgtest [05:25:17]: build not needed 237s autopkgtest [05:25:19]: test run-unit-test: preparing testbed 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 237s Solving dependencies... 237s The following NEW packages will be installed: 237s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 237s gdal-plugins libabsl20260107 libaec0 libaom3 libarmadillo15 libarpack2t64 237s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 237s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-2 237s libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran5 libgif7 237s libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 237s libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 237s libhwy1t64 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjxl0.11 237s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 237s libltdl7 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 libodbc2 237s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 237s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 237s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 237s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 237s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 237s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 237s libxt6t64 libyuv0 mysql-common proj-data r-base-core r-cran-abind 237s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-dbi 237s r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-farver r-cran-fields 237s r-cran-fnn r-cran-future r-cran-future.apply r-cran-ggplot2 r-cran-globals 237s r-cran-glue r-cran-gstat r-cran-gtable r-cran-intervals r-cran-isoband 237s r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lifecycle 237s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 237s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-r6 237s r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-s2 237s r-cran-s7 r-cran-scales r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime 237s r-cran-spam r-cran-stars r-cran-terra r-cran-units r-cran-vctrs 237s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xts r-cran-zoo 237s unixodbc-common unzip x11-common xdg-utils zip 237s 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. 237s Need to get 165 MB of archives. 237s After this operation, 357 MB of additional disk space will be used. 237s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 237s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 238s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 238s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 238s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 238s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 238s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 238s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB] 238s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 238s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 238s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 238s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 238s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 239s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 239s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 239s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 239s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 239s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 239s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 239s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 239s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 239s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 239s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 239s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 239s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 239s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 239s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 239s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 239s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 239s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 239s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 239s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 239s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 239s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 239s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 239s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 239s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 239s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 239s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 240s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 240s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 240s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 240s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 240s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 240s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 240s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB] 240s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 240s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 240s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 240s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 240s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 240s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 240s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 240s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 240s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 240s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 240s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 240s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 240s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 240s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 240s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 240s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 240s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 240s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 240s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 240s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 240s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 240s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 240s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 240s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 240s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 240s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 240s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 240s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 240s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 240s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4build1 [189 kB] 241s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 241s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 241s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 241s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 241s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 241s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 241s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 241s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 241s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 241s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 241s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 241s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 241s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 241s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 241s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 241s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 241s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 241s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 241s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 241s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 241s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 241s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 241s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 241s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 241s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 241s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 242s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 242s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 242s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 242s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 242s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 242s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 242s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 242s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 242s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 242s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 242s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 242s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dotcall64 amd64 1.2-1 [36.8 kB] 242s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 242s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 242s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 242s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 242s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spam amd64 2.11-1-1 [2756 kB] 242s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 242s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 242s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fields amd64 16.3.1-1 [3766 kB] 242s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 242s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.19.0-1 [160 kB] 242s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 242s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 242s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 242s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 242s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 242s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 242s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 242s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 242s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 242s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB] 242s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 242s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 242s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 242s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 243s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 243s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 243s Get:141 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 243s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 243s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 243s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 243s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 243s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 243s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 243s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 243s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 243s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 243s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 243s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 243s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 243s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.7-0-1 [4415 kB] 243s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 243s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 244s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 244s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB] 244s Preconfiguring packages ... 244s Fetched 165 MB in 7s (25.1 MB/s) 244s Selecting previously unselected package fonts-dejavu-mono. 244s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 244s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 244s Unpacking fonts-dejavu-mono (2.37-8build1) ... 244s Selecting previously unselected package fonts-dejavu-core. 244s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 244s Unpacking fonts-dejavu-core (2.37-8build1) ... 244s Selecting previously unselected package fontconfig-config. 244s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 245s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 245s Selecting previously unselected package libfontconfig1:amd64. 245s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 245s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 245s Selecting previously unselected package fontconfig. 245s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 245s Unpacking fontconfig (2.17.1-3ubuntu1) ... 245s Selecting previously unselected package gdal-data. 245s Preparing to unpack .../005-gdal-data_3.12.1+dfsg-1_all.deb ... 245s Unpacking gdal-data (3.12.1+dfsg-1) ... 245s Selecting previously unselected package gdal-plugins:amd64. 245s Preparing to unpack .../006-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 245s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 245s Selecting previously unselected package libabsl20260107:amd64. 245s Preparing to unpack .../007-libabsl20260107_20260107.0-1_amd64.deb ... 245s Unpacking libabsl20260107:amd64 (20260107.0-1) ... 245s Selecting previously unselected package libaec0:amd64. 245s Preparing to unpack .../008-libaec0_1.1.5-1_amd64.deb ... 245s Unpacking libaec0:amd64 (1.1.5-1) ... 245s Selecting previously unselected package libaom3:amd64. 245s Preparing to unpack .../009-libaom3_3.13.1-2_amd64.deb ... 245s Unpacking libaom3:amd64 (3.13.1-2) ... 245s Selecting previously unselected package libblas3:amd64. 245s Preparing to unpack .../010-libblas3_3.12.1-7ubuntu1_amd64.deb ... 245s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 245s Selecting previously unselected package libgfortran5:amd64. 245s Preparing to unpack .../011-libgfortran5_16-20260208-1ubuntu1_amd64.deb ... 245s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ... 245s Selecting previously unselected package liblapack3:amd64. 245s Preparing to unpack .../012-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 245s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 245s Selecting previously unselected package libarpack2t64:amd64. 245s Preparing to unpack .../013-libarpack2t64_3.9.1-6_amd64.deb ... 245s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 245s Selecting previously unselected package libsuperlu7:amd64. 245s Preparing to unpack .../014-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 245s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 245s Selecting previously unselected package libarmadillo15. 245s Preparing to unpack .../015-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 245s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 245s Selecting previously unselected package libdav1d7:amd64. 245s Preparing to unpack .../016-libdav1d7_1.5.3-1_amd64.deb ... 245s Unpacking libdav1d7:amd64 (1.5.3-1) ... 245s Selecting previously unselected package libgav1-2:amd64. 245s Preparing to unpack .../017-libgav1-2_0.20.0-2build1_amd64.deb ... 245s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 245s Selecting previously unselected package libjpeg-turbo8:amd64. 245s Preparing to unpack .../018-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 245s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 245s Selecting previously unselected package libjpeg8:amd64. 245s Preparing to unpack .../019-libjpeg8_8c-2ubuntu12_amd64.deb ... 245s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 245s Selecting previously unselected package libyuv0:amd64. 245s Preparing to unpack .../020-libyuv0_0.0.1922.20260106-1_amd64.deb ... 245s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 245s Selecting previously unselected package libavif16:amd64. 245s Preparing to unpack .../021-libavif16_1.3.0-1ubuntu3_amd64.deb ... 245s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 245s Selecting previously unselected package libsnappy1v5:amd64. 245s Preparing to unpack .../022-libsnappy1v5_1.2.2-2_amd64.deb ... 245s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 245s Selecting previously unselected package libblosc1:amd64. 245s Preparing to unpack .../023-libblosc1_1.21.5+ds-2_amd64.deb ... 245s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 245s Selecting previously unselected package libpixman-1-0:amd64. 245s Preparing to unpack .../024-libpixman-1-0_0.46.4-1_amd64.deb ... 245s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 245s Selecting previously unselected package libxcb-render0:amd64. 245s Preparing to unpack .../025-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 245s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 245s Selecting previously unselected package libxcb-shm0:amd64. 245s Preparing to unpack .../026-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 245s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 245s Selecting previously unselected package libxrender1:amd64. 245s Preparing to unpack .../027-libxrender1_1%3a0.9.12-1_amd64.deb ... 245s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 245s Selecting previously unselected package libcairo2:amd64. 245s Preparing to unpack .../028-libcairo2_1.18.4-3_amd64.deb ... 245s Unpacking libcairo2:amd64 (1.18.4-3) ... 245s Selecting previously unselected package libcfitsio10t64:amd64. 245s Preparing to unpack .../029-libcfitsio10t64_4.6.3-1_amd64.deb ... 245s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 245s Selecting previously unselected package libdatrie1:amd64. 245s Preparing to unpack .../030-libdatrie1_0.2.14-1_amd64.deb ... 245s Unpacking libdatrie1:amd64 (0.2.14-1) ... 245s Selecting previously unselected package libde265-0:amd64. 245s Preparing to unpack .../031-libde265-0_1.0.16-1build1_amd64.deb ... 245s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 245s Selecting previously unselected package libdeflate0:amd64. 245s Preparing to unpack .../032-libdeflate0_1.23-2build1_amd64.deb ... 245s Unpacking libdeflate0:amd64 (1.23-2build1) ... 245s Selecting previously unselected package libfyba0t64:amd64. 245s Preparing to unpack .../033-libfyba0t64_4.1.1-11build2_amd64.deb ... 245s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 245s Selecting previously unselected package libminizip1t64:amd64. 245s Preparing to unpack .../034-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 245s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 245s Selecting previously unselected package libfreexl1:amd64. 245s Preparing to unpack .../035-libfreexl1_2.0.0-1build3_amd64.deb ... 245s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 245s Selecting previously unselected package libgeos3.14.1:amd64. 245s Preparing to unpack .../036-libgeos3.14.1_3.14.1-2_amd64.deb ... 245s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 245s Selecting previously unselected package libgeos-c1t64:amd64. 245s Preparing to unpack .../037-libgeos-c1t64_3.14.1-2_amd64.deb ... 245s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 245s Selecting previously unselected package proj-data. 245s Preparing to unpack .../038-proj-data_9.7.1-1_all.deb ... 245s Unpacking proj-data (9.7.1-1) ... 245s Selecting previously unselected package libjbig0:amd64. 245s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 245s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 245s Selecting previously unselected package liblerc4:amd64. 245s Preparing to unpack .../040-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 245s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 245s Selecting previously unselected package libsharpyuv0:amd64. 245s Preparing to unpack .../041-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 245s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 245s Selecting previously unselected package libwebp7:amd64. 245s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_amd64.deb ... 245s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 245s Selecting previously unselected package libtiff6:amd64. 245s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 245s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 245s Selecting previously unselected package libproj25:amd64. 245s Preparing to unpack .../044-libproj25_9.7.1-1_amd64.deb ... 245s Unpacking libproj25:amd64 (9.7.1-1) ... 245s Selecting previously unselected package libgeotiff5:amd64. 245s Preparing to unpack .../045-libgeotiff5_1.7.4-1build1_amd64.deb ... 245s Unpacking libgeotiff5:amd64 (1.7.4-1build1) ... 245s Selecting previously unselected package libgif7:amd64. 245s Preparing to unpack .../046-libgif7_5.2.2-1ubuntu3_amd64.deb ... 245s Unpacking libgif7:amd64 (5.2.2-1ubuntu3) ... 245s Selecting previously unselected package libsz2:amd64. 245s Preparing to unpack .../047-libsz2_1.1.5-1_amd64.deb ... 245s Unpacking libsz2:amd64 (1.1.5-1) ... 245s Selecting previously unselected package libhdf4-0:amd64. 245s Preparing to unpack .../048-libhdf4-0_4.3.1-2_amd64.deb ... 245s Unpacking libhdf4-0:amd64 (4.3.1-2) ... 245s Selecting previously unselected package libhdf5-310:amd64. 245s Preparing to unpack .../049-libhdf5-310_1.14.6+repack-2_amd64.deb ... 245s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 245s Selecting previously unselected package 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libnetcdf22:amd64 (1:4.9.3-1build1) ... 246s Selecting previously unselected package libltdl7:amd64. 246s Preparing to unpack .../066-libltdl7_2.5.4-9_amd64.deb ... 246s Unpacking libltdl7:amd64 (2.5.4-9) ... 246s Selecting previously unselected package libodbc2:amd64. 246s Preparing to unpack .../067-libodbc2_2.3.14-1_amd64.deb ... 246s Unpacking libodbc2:amd64 (2.3.14-1) ... 246s Selecting previously unselected package unixodbc-common. 246s Preparing to unpack .../068-unixodbc-common_2.3.14-1_all.deb ... 246s Unpacking unixodbc-common (2.3.14-1) ... 246s Selecting previously unselected package libodbcinst2:amd64. 246s Preparing to unpack .../069-libodbcinst2_2.3.14-1_amd64.deb ... 246s Unpacking libodbcinst2:amd64 (2.3.14-1) ... 246s Selecting previously unselected package libopenjp2-7:amd64. 246s Preparing to unpack .../070-libopenjp2-7_2.5.4-1_amd64.deb ... 246s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 246s Selecting previously unselected package libgpgmepp6t64:amd64. 246s Preparing to unpack .../071-libgpgmepp6t64_1.24.2-3ubuntu2_amd64.deb ... 246s Unpacking libgpgmepp6t64:amd64 (1.24.2-3ubuntu2) ... 246s Selecting previously unselected package libpoppler147:amd64. 246s Preparing to unpack .../072-libpoppler147_25.03.0-11.1_amd64.deb ... 246s Unpacking libpoppler147:amd64 (25.03.0-11.1) ... 246s Selecting previously unselected package libpq5:amd64. 246s Preparing to unpack .../073-libpq5_18.1-2_amd64.deb ... 246s Unpacking libpq5:amd64 (18.1-2) ... 246s Selecting previously unselected package libqhull-r8.0:amd64. 246s Preparing to unpack .../074-libqhull-r8.0_2020.2-8_amd64.deb ... 246s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 246s Selecting previously unselected package librttopo1:amd64. 246s Preparing to unpack .../075-librttopo1_1.1.0-4build1_amd64.deb ... 246s Unpacking librttopo1:amd64 (1.1.0-4build1) ... 246s Selecting previously unselected package libspatialite8t64:amd64. 246s Preparing to unpack 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unselected package libxft2:amd64. 246s Preparing to unpack .../092-libxft2_2.3.6-1build2_amd64.deb ... 246s Unpacking libxft2:amd64 (2.3.6-1build2) ... 246s Selecting previously unselected package libxss1:amd64. 246s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build4_amd64.deb ... 246s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 246s Selecting previously unselected package libtk8.6:amd64. 246s Preparing to unpack .../094-libtk8.6_8.6.17-1_amd64.deb ... 246s Unpacking libtk8.6:amd64 (8.6.17-1) ... 246s Selecting previously unselected package libudunits2-data. 246s Preparing to unpack .../095-libudunits2-data_2.2.28-8_all.deb ... 246s Unpacking libudunits2-data (2.2.28-8) ... 246s Selecting previously unselected package libudunits2-0:amd64. 246s Preparing to unpack .../096-libudunits2-0_2.2.28-8_amd64.deb ... 246s Unpacking libudunits2-0:amd64 (2.2.28-8) ... 246s Selecting previously unselected package libxt6t64:amd64. 246s Preparing to unpack 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247s Preparing to unpack .../103-r-cran-mass_7.3-65-1_amd64.deb ... 247s Unpacking r-cran-mass (7.3-65-1) ... 247s Selecting previously unselected package r-cran-class. 247s Preparing to unpack .../104-r-cran-class_7.3-23-1_amd64.deb ... 247s Unpacking r-cran-class (7.3-23-1) ... 247s Selecting previously unselected package r-cran-proxy. 247s Preparing to unpack .../105-r-cran-proxy_0.4-27-1_amd64.deb ... 247s Unpacking r-cran-proxy (0.4-27-1) ... 247s Selecting previously unselected package r-cran-e1071. 247s Preparing to unpack .../106-r-cran-e1071_1.7-17-1_amd64.deb ... 247s Unpacking r-cran-e1071 (1.7-17-1) ... 247s Selecting previously unselected package r-cran-kernsmooth. 247s Preparing to unpack .../107-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 247s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 247s Selecting previously unselected package r-cran-classint. 247s Preparing to unpack .../108-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 247s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 247s Selecting previously unselected package r-cran-cli. 247s Preparing to unpack .../109-r-cran-cli_3.6.4-1_amd64.deb ... 247s Unpacking r-cran-cli (3.6.4-1) ... 247s Selecting previously unselected package r-cran-codetools. 247s Preparing to unpack .../110-r-cran-codetools_0.2-20-1build1_all.deb ... 247s Unpacking r-cran-codetools (0.2-20-1build1) ... 247s Selecting previously unselected package r-cran-dbi. 247s Preparing to unpack .../111-r-cran-dbi_1.2.3-1build1_all.deb ... 247s Unpacking r-cran-dbi (1.2.3-1build1) ... 247s Selecting previously unselected package r-cran-digest. 247s Preparing to unpack .../112-r-cran-digest_0.6.39-1_amd64.deb ... 247s Unpacking r-cran-digest (0.6.39-1) ... 247s Selecting previously unselected package r-cran-dotcall64. 247s Preparing to unpack .../113-r-cran-dotcall64_1.2-1_amd64.deb ... 247s Unpacking r-cran-dotcall64 (1.2-1) ... 247s Selecting previously unselected package r-cran-farver. 247s Preparing to unpack .../114-r-cran-farver_2.1.2-1_amd64.deb ... 247s Unpacking r-cran-farver (2.1.2-1) ... 247s Selecting previously unselected package r-cran-littler. 247s Preparing to unpack .../115-r-cran-littler_0.3.22-1_amd64.deb ... 247s Unpacking r-cran-littler (0.3.22-1) ... 247s Selecting previously unselected package r-cran-pkgkitten. 247s Preparing to unpack .../116-r-cran-pkgkitten_0.2.4-1_all.deb ... 247s Unpacking r-cran-pkgkitten (0.2.4-1) ... 247s Selecting previously unselected package r-cran-rcpp. 247s Preparing to unpack .../117-r-cran-rcpp_1.1.0-1_amd64.deb ... 247s Unpacking r-cran-rcpp (1.1.0-1) ... 247s Selecting previously unselected package r-cran-spam. 247s Preparing to unpack .../118-r-cran-spam_2.11-1-1_amd64.deb ... 247s Unpacking r-cran-spam (2.11-1-1) ... 247s Selecting previously unselected package r-cran-viridislite. 247s Preparing to unpack .../119-r-cran-viridislite_0.4.3-1_all.deb ... 247s Unpacking r-cran-viridislite (0.4.3-1) ... 247s Selecting previously unselected package r-cran-maps. 247s Preparing to unpack .../120-r-cran-maps_3.4.2.1-1_amd64.deb ... 247s Unpacking r-cran-maps (3.4.2.1-1) ... 247s Selecting previously unselected package r-cran-fields. 247s Preparing to unpack .../121-r-cran-fields_16.3.1-1_amd64.deb ... 247s Unpacking r-cran-fields (16.3.1-1) ... 247s Selecting previously unselected package r-cran-fnn. 247s Preparing to unpack .../122-r-cran-fnn_1.1.4.1-1_amd64.deb ... 247s Unpacking r-cran-fnn (1.1.4.1-1) ... 247s Selecting previously unselected package r-cran-globals. 247s Preparing to unpack .../123-r-cran-globals_0.19.0-1_all.deb ... 247s Unpacking r-cran-globals (0.19.0-1) ... 247s Selecting previously unselected package r-cran-listenv. 247s Preparing to unpack .../124-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 247s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-parallelly. 247s Preparing to unpack .../125-r-cran-parallelly_1.42.0-1_amd64.deb ... 247s Unpacking r-cran-parallelly (1.42.0-1) ... 247s Selecting previously unselected package r-cran-future. 247s Preparing to unpack .../126-r-cran-future_1.34.0+dfsg-1_all.deb ... 247s Unpacking r-cran-future (1.34.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-future.apply. 247s Preparing to unpack .../127-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 247s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 247s Selecting previously unselected package r-cran-glue. 247s Preparing to unpack .../128-r-cran-glue_1.8.0-1_amd64.deb ... 247s Unpacking r-cran-glue (1.8.0-1) ... 247s Selecting previously unselected package r-cran-rlang. 247s Preparing to unpack .../129-r-cran-rlang_1.1.5-3_amd64.deb ... 247s Unpacking r-cran-rlang (1.1.5-3) ... 247s Selecting previously unselected package r-cran-lifecycle. 247s Preparing to unpack .../130-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 247s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 247s Selecting previously unselected package r-cran-gtable. 247s Preparing to unpack .../131-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 247s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 247s Selecting previously unselected package r-cran-isoband. 247s Preparing to unpack .../132-r-cran-isoband_0.2.7-1_amd64.deb ... 247s Unpacking r-cran-isoband (0.2.7-1) ... 247s Selecting previously unselected package r-cran-s7. 247s Preparing to unpack .../133-r-cran-s7_0.2.0-1_amd64.deb ... 247s Unpacking r-cran-s7 (0.2.0-1) ... 247s Selecting previously unselected package r-cran-labeling. 247s Preparing to unpack .../134-r-cran-labeling_0.4.3-1_all.deb ... 247s Unpacking r-cran-labeling (0.4.3-1) ... 247s Selecting previously unselected package r-cran-r6. 247s Preparing to unpack .../135-r-cran-r6_2.6.1-1_all.deb ... 247s Unpacking r-cran-r6 (2.6.1-1) ... 247s Selecting previously unselected package r-cran-rcolorbrewer. 247s Preparing to unpack .../136-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 247s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 247s 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(3.12.1+dfsg-1) ... 251s Setting up r-cran-terra (1.8-70-1build2) ... 251s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 251s Setting up r-cran-stars (0.7-0-1) ... 251s Setting up r-cran-sftime (0.2-0-6) ... 251s Setting up r-cran-gstat (2.1-3-2) ... 251s Setting up r-cran-raster (3.6-31-2) ... 251s Processing triggers for install-info (7.2-5) ... 251s Processing triggers for libc-bin (2.42-2ubuntu4) ... 251s Processing triggers for man-db (2.13.1-1build1) ... 252s autopkgtest [05:25:34]: test run-unit-test: [----------------------- 252s BEGIN TEST allier.R 252s 252s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 252s Copyright (C) 2025 The R Foundation for Statistical Computing 252s Platform: x86_64-pc-linux-gnu 252s 252s R is free software and comes with ABSOLUTELY NO WARRANTY. 252s You are welcome to redistribute it under certain conditions. 252s Type 'license()' or 'licence()' for distribution details. 252s 252s R is a collaborative project with many contributors. 252s Type 'contributors()' for more information and 252s 'citation()' on how to cite R or R packages in publications. 252s 252s Type 'demo()' for some demos, 'help()' for on-line help, or 252s 'help.start()' for an HTML browser interface to help. 252s Type 'q()' to quit R. 252s 253s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 253s > library(sp) 253s > library(gstat) 253s > 253s > # some data 253s > x <- c(215, 330, 410, 470, 545) 253s > y <- c(230, 310, 330, 340, 365) 253s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 253s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 253s > Allier <- data.frame(x, y, fc, por) 253s > coordinates(Allier) = ~x+y 253s > 253s > # gstat object for co-kriging using linear model of co-regionalization 253s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 253s + model=vgm(0.00247, "Sph", 480, 0.00166)) 253s > g <- gstat(g, id="por", formula=por~1, data=Allier, 253s + model=vgm(0.00239, "Sph", 480, 0.00118)) 253s > g <- gstat(g, id=c("fc", "por"), 253s + model=vgm(0.00151, "Sph", 480, -0.00124)) 253s > 253s > # predict at single point 253s > g$set = list(choleski = 0) # LDL' 253s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 253s Linear Model of Coregionalization found. Good. 253s [using ordinary cokriging] 253s we're at location X: 450 Y: 350 Z: 0 253s zero block size 253s we're at point X: 450 Y: 350 Z: 0 253s 253s # X: 253s #Matrix: 10 by 2 253s rbind( 253s c( 1.000000, 0.000000), # row 1 253s c( 1.000000, 0.000000), # row 2 253s c( 1.000000, 0.000000), # row 3 253s c( 1.000000, 0.000000), # row 4 253s c( 1.000000, 0.000000), # row 5 253s c( 0.000000, 1.000000), # row 6 253s c( 0.000000, 1.000000), # row 7 253s c( 0.000000, 1.000000), # row 8 253s c( 0.000000, 1.000000), # row 9 253s c( 0.000000, 1.000000) # row 10 253s ) 253s [using generalized covariances: max_val - semivariance()] 253s # Covariances (x_i, x_j) matrix C (upper triangle): 253s #Matrix: 10 by 10 253s rbind( 253s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 253s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 253s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 253s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 253s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 253s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 253s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 253s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 253s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 253s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 253s ) 253s 253s # glm->C, LDL' decomposed:: 253s #Matrix: 10 by 10 253s rbind( 253s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 253s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 253s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 253s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 253s ) 253s 253s # X'C-1 X: 253s #Matrix: 2 by 2 253s rbind( 253s c(665.433994, -232.313340), # row 1 253s c(-232.313340, 729.440848) # row 2 253s ) 253s 253s # beta: 253s #Vector: dim: 2 253s c( 0.244216, 0.440933) 253s # Cov(beta), (X'C-1 X)-1: 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.001691, 0.000538), # row 1 253s c( 0.000538, 0.001542) # row 2 253s ) 253s 253s # Corr(beta): 253s #Matrix: 2 by 2 253s rbind( 253s c( 1.000000, 0.333447), # row 1 253s c( 0.333447, 1.000000) # row 2 253s ) 253s 253s # X0 (X values at prediction location x0): 253s #Matrix: 2 by 2 253s rbind( 253s c( 1.000000, 0.000000), # row 1 253s c( 0.000000, 1.000000) # row 2 253s ) 253s 253s # BLUE(mu), E(y(x0)) = X0'beta: 253s #Vector: dim: 2 253s c( 0.244216, 0.440933) 253s # Covariances (x_i, x_0), C0: 253s #Matrix: 10 by 2 253s rbind( 253s c( 0.000638, 0.000390), # row 1 253s c( 0.001516, 0.000927), # row 2 253s c( 0.002126, 0.001300), # row 3 253s c( 0.002298, 0.001405), # row 4 253s c( 0.001738, 0.001062), # row 5 253s c( 0.000390, 0.000618), # row 6 253s c( 0.000927, 0.001467), # row 7 253s c( 0.001300, 0.002057), # row 8 253s c( 0.001405, 0.002223), # row 9 253s c( 0.001062, 0.001681) # row 10 253s ) 253s 253s # C-1 C0: 253s #Matrix: 10 by 2 253s rbind( 253s c( 0.008927, -0.017995), # row 1 253s c( 0.061935, -0.028550), # row 2 253s c( 0.225195, 0.078344), # row 3 253s c( 0.356735, 0.190177), # row 4 253s c( 0.094128, -0.023136), # row 5 253s c(-0.021119, 0.004935), # row 6 253s c(-0.033508, 0.055601), # row 7 253s c( 0.091947, 0.242576), # row 8 253s c( 0.223200, 0.398927), # row 9 253s c(-0.027153, 0.088995) # row 10 253s ) 253s 253s # [a] Cov_ij(B,B) or Cov_ij(0,0): 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.004130, 0.000270), # row 1 253s c( 0.000270, 0.003570) # row 2 253s ) 253s 253s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.000129, -0.000107), # row 1 253s c(-0.000107, 0.000089) # row 2 253s ) 253s 253s # [b] c0'C-1 c0: 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.001926, 0.001532), # row 1 253s c( 0.001532, 0.001931) # row 2 253s ) 253s 253s # Best Linear Unbiased Predictor: 253s #Vector: dim: 2 253s c( 0.253090, 0.441258) 253s # MSPE ([a]-[b]+[c]): 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.002332, -0.001369), # row 1 253s c(-0.001369, 0.001729) # row 2 253s ) 253s 253s # kriging weights: 253s #Matrix: 10 by 2 253s rbind( 253s c( 0.071177, -0.064988), # row 1 253s c( 0.108451, -0.066123), # row 2 253s c( 0.268160, 0.043141), # row 3 253s c( 0.401959, 0.153312), # row 4 253s c( 0.150253, -0.065342), # row 5 253s c(-0.076273, 0.056759), # row 6 253s c(-0.077605, 0.093781), # row 7 253s c( 0.050632, 0.277731), # row 8 253s c( 0.179933, 0.435972), # row 9 253s c(-0.076688, 0.135756) # row 10 253s ) 253s 253s 253s > g$set = list(choleski = 1) # Choleski 253s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 253s Linear Model of Coregionalization found. Good. 253s [using ordinary cokriging] 253s we're at location X: 450 Y: 350 Z: 0 253s zero block size 253s we're at point X: 450 Y: 350 Z: 0 253s 253s # X: 253s #Matrix: 10 by 2 253s rbind( 253s c( 1.000000, 0.000000), # row 1 253s c( 1.000000, 0.000000), # row 2 253s c( 1.000000, 0.000000), # row 3 253s c( 1.000000, 0.000000), # row 4 253s c( 1.000000, 0.000000), # row 5 253s c( 0.000000, 1.000000), # row 6 253s c( 0.000000, 1.000000), # row 7 253s c( 0.000000, 1.000000), # row 8 253s c( 0.000000, 1.000000), # row 9 253s c( 0.000000, 1.000000) # row 10 253s ) 253s [using generalized covariances: max_val - semivariance()] 253s # Covariances (x_i, x_j) matrix C (upper triangle): 253s #Matrix: 10 by 10 253s rbind( 253s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 253s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 253s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 253s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 253s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 253s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 253s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 253s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 253s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 253s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 253s ) 253s 253s # glm->C, Choleski decomposed:: 253s #Matrix: 10 by 10 253s rbind( 253s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 253s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 253s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 253s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 253s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 253s ) 253s 253s # X'C-1 X: 253s #Matrix: 2 by 2 253s rbind( 253s c(665.433994, -232.313340), # row 1 253s c(-232.313340, 729.440848) # row 2 253s ) 253s 253s # beta: 253s #Vector: dim: 2 253s c( 0.244216, 0.440933) 253s # Cov(beta), (X'C-1 X)-1: 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.001691, 0.000538), # row 1 253s c( 0.000538, 0.001542) # row 2 253s ) 253s 253s # Corr(beta): 253s #Matrix: 2 by 2 253s rbind( 253s c( 1.000000, 0.333447), # row 1 253s c( 0.333447, 1.000000) # row 2 253s ) 253s 253s # X0 (X values at prediction location x0): 253s #Matrix: 2 by 2 253s rbind( 253s c( 1.000000, 0.000000), # row 1 253s c( 0.000000, 1.000000) # row 2 253s ) 253s 253s # BLUE(mu), E(y(x0)) = X0'beta: 253s #Vector: dim: 2 253s c( 0.244216, 0.440933) 253s # Covariances (x_i, x_0), C0: 253s #Matrix: 10 by 2 253s rbind( 253s c( 0.000638, 0.000390), # row 1 253s c( 0.001516, 0.000927), # row 2 253s c( 0.002126, 0.001300), # row 3 253s c( 0.002298, 0.001405), # row 4 253s c( 0.001738, 0.001062), # row 5 253s c( 0.000390, 0.000618), # row 6 253s c( 0.000927, 0.001467), # row 7 253s c( 0.001300, 0.002057), # row 8 253s c( 0.001405, 0.002223), # row 9 253s c( 0.001062, 0.001681) # row 10 253s ) 253s 253s # C-1 C0: 253s #Matrix: 10 by 2 253s rbind( 253s c( 0.008927, -0.017995), # row 1 253s c( 0.061935, -0.028550), # row 2 253s c( 0.225195, 0.078344), # row 3 253s c( 0.356735, 0.190177), # row 4 253s c( 0.094128, -0.023136), # row 5 253s c(-0.021119, 0.004935), # row 6 253s c(-0.033508, 0.055601), # row 7 253s c( 0.091947, 0.242576), # row 8 253s c( 0.223200, 0.398927), # row 9 253s c(-0.027153, 0.088995) # row 10 253s ) 253s 253s # [a] Cov_ij(B,B) or Cov_ij(0,0): 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.004130, 0.000270), # row 1 253s c( 0.000270, 0.003570) # row 2 253s ) 253s 253s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.000129, -0.000107), # row 1 253s c(-0.000107, 0.000089) # row 2 253s ) 253s 253s # [b] c0'C-1 c0: 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.001926, 0.001532), # row 1 253s c( 0.001532, 0.001931) # row 2 253s ) 253s 253s # Best Linear Unbiased Predictor: 253s #Vector: dim: 2 253s c( 0.253090, 0.441258) 253s # MSPE ([a]-[b]+[c]): 253s #Matrix: 2 by 2 253s rbind( 253s c( 0.002332, -0.001369), # row 1 253s c(-0.001369, 0.001729) # row 2 253s ) 253s 253s # kriging weights: 253s #Matrix: 10 by 2 253s rbind( 253s c( 0.071177, -0.064988), # row 1 253s c( 0.108451, -0.066123), # row 2 253s c( 0.268160, 0.043141), # row 3 253s c( 0.401959, 0.153312), # row 4 253s c( 0.150253, -0.065342), # row 5 253s c(-0.076273, 0.056759), # row 6 253s c(-0.077605, 0.093781), # row 7 253s c( 0.050632, 0.277731), # row 8 253s c( 0.179933, 0.435972), # row 9 253s c(-0.076688, 0.135756) # row 10 253s ) 253s 253s 253s > all.equal(A,B) 253s [1] TRUE 253s > 253s > # TRUE 253s > 253s BEGIN TEST blockkr.R 253s 253s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 253s Copyright (C) 2025 The R Foundation for Statistical Computing 253s Platform: x86_64-pc-linux-gnu 253s 253s R is free software and comes with ABSOLUTELY NO WARRANTY. 253s You are welcome to redistribute it under certain conditions. 253s Type 'license()' or 'licence()' for distribution details. 253s 253s R is a collaborative project with many contributors. 253s Type 'contributors()' for more information and 253s 'citation()' on how to cite R or R packages in publications. 253s 253s Type 'demo()' for some demos, 'help()' for on-line help, or 253s 'help.start()' for an HTML browser interface to help. 253s Type 'q()' to quit R. 253s 253s > library(sp) 253s > data(meuse) 253s > coordinates(meuse) = c("x", "y") 253s > new.locs <- SpatialPoints(data.frame( 253s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 253s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 253s > library(gstat) 253s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 253s + block = c(40,40), nmax = 40) 253s [using ordinary kriging] 253s coordinates var1.pred var1.var 253s 1 (181170, 333250) 268.7576 19447.67 253s 2 (180310, 332189) 663.4915 16991.33 253s 3 (180205, 331707) 251.4606 21579.71 253s 4 (178673, 330066) 532.5776 73807.91 253s 5 (178770, 330675) 664.4039 23589.17 253s 6 (178270, 331075) 565.5436 155113.23 253s > 253s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 253s > 253s > disc = c(-15,-5,5,15) 253s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 253s > block.irreg 253s x y 253s 1 -15 -15 253s 2 -5 -15 253s 3 5 -15 253s 4 15 -15 253s 5 -15 -5 253s 6 -5 -5 253s 7 5 -5 253s 8 15 -5 253s 9 -15 5 253s 10 -5 5 253s 11 5 5 253s 12 15 5 253s 13 -15 15 253s 14 -5 15 253s 15 5 15 253s 16 15 15 253s > 253s > # first disable default Gaussian quadrature used for block integration, by 253s > # setting nblockdiscr explicitly: 253s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 253s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 253s [using ordinary kriging] 253s coordinates var1.pred var1.var 253s 1 (181170, 333250) 268.7324 19568.76 253s > # now pass the same block discretization as block.irreg: 253s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 253s + block = block.irreg, nmax = 40) 253s [using ordinary kriging] 253s coordinates var1.pred var1.var 253s 1 (181170, 333250) 268.7324 19568.76 253s > # check weights argument: 253s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 253s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 253s + block = block.irreg, nmax = 40) 253s [using ordinary kriging] 253s coordinates var1.pred var1.var 253s 1 (181170, 333250) 268.7324 19568.76 253s > 253s BEGIN TEST covtable.R 253s 253s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 253s Copyright (C) 2025 The R Foundation for Statistical Computing 253s Platform: x86_64-pc-linux-gnu 253s 253s R is free software and comes with ABSOLUTELY NO WARRANTY. 253s You are welcome to redistribute it under certain conditions. 253s Type 'license()' or 'licence()' for distribution details. 253s 253s R is a collaborative project with many contributors. 253s Type 'contributors()' for more information and 253s 'citation()' on how to cite R or R packages in publications. 253s 253s Type 'demo()' for some demos, 'help()' for on-line help, or 253s 'help.start()' for an HTML browser interface to help. 253s Type 'q()' to quit R. 253s 254s > library(gstat) 254s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 254s > d$z=1:4 254s > vv=vgm(model = "Tab", covtable = 254s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 254s > vv 254s model psill maxdist 254s 1 Tab NA 1 254s covariance table: 254s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 254s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 254s [using ordinary kriging] 254s x y var1.pred var1.var 254s 1 0 0 2.5 1.017767 254s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 254s [using ordinary kriging] 254s x y var1.pred var1.var 254s 1 0 0 2.5 1.017863 254s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 254s [using ordinary kriging] 254s x y var1.pred var1.var 254s 1 0 0 1.5 1.267767 254s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 254s [using ordinary kriging] 254s x y var1.pred var1.var 254s 1 0 0 1.5 1.267863 254s > 254s BEGIN TEST cv.R 254s 254s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 254s Copyright (C) 2025 The R Foundation for Statistical Computing 254s Platform: x86_64-pc-linux-gnu 254s 254s R is free software and comes with ABSOLUTELY NO WARRANTY. 254s You are welcome to redistribute it under certain conditions. 254s Type 'license()' or 'licence()' for distribution details. 254s 254s R is a collaborative project with many contributors. 254s Type 'contributors()' for more information and 254s 'citation()' on how to cite R or R packages in publications. 254s 254s Type 'demo()' for some demos, 'help()' for on-line help, or 254s 'help.start()' for an HTML browser interface to help. 254s Type 'q()' to quit R. 254s 254s > # try bivariate cokriging; cross validate first variable 254s > library(sp) 254s > data(meuse) 254s > library(gstat) 254s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 254s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 254s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 254s > v=variogram(g) 254s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 254s > g=fit.lmc(v, g) 254s > g 254s data: 254s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 254s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 254s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 254s variograms: 254s model psill range 254s log-zinc Sph 0.7132435 1000 254s log-lead Sph 0.6133020 1000 254s log-copper Sph 0.3634211 1000 254s log-zinc.log-lead Sph 0.6367012 1000 254s log-zinc.log-copper Sph 0.4570044 1000 254s log-lead.log-copper Sph 0.3934910 1000 254s ~x + y 254s > set.seed(13131) 254s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 254s log.zinc.pred log.zinc.var observed residual 254s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 254s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 254s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 254s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 254s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 254s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 254s zscore fold x y 254s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 254s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 254s Median :-0.10755 Median :3.000 Median :179991 Median :331633 254s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 254s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 254s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 254s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 254s Warning message: 254s In checkNames(value) : 254s attempt to set invalid names: this may lead to problems later on. See ?make.names 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 254s Intrinsic Correlation found. Good. 254s [using ordinary cokriging] 255s Intrinsic Correlation found. Good. 255s [using ordinary cokriging] 255s Intrinsic Correlation found. Good. 255s [using ordinary cokriging] 255s Intrinsic Correlation found. Good. 255s [using ordinary cokriging] 255s log.zinc.pred log.zinc.var observed residual 255s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190976 255s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 255s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 255s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 255s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 255s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 255s zscore fold x y 255s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 255s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 255s Median : 0.007242 Median :3.000 Median :179991 Median :331633 255s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 255s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 255s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 255s > Warning message: 255s In checkNames(value) : 255s attempt to set invalid names: this may lead to problems later on. See ?make.names 255s 255s BEGIN TEST cv3d.R 255s 255s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 255s Copyright (C) 2025 The R Foundation for Statistical Computing 255s Platform: x86_64-pc-linux-gnu 255s 255s R is free software and comes with ABSOLUTELY NO WARRANTY. 255s You are welcome to redistribute it under certain conditions. 255s Type 'license()' or 'licence()' for distribution details. 255s 255s R is a collaborative project with many contributors. 255s Type 'contributors()' for more information and 255s 'citation()' on how to cite R or R packages in publications. 255s 255s Type 'demo()' for some demos, 'help()' for on-line help, or 255s 'help.start()' for an HTML browser interface to help. 255s Type 'q()' to quit R. 255s 255s > options(digits = 4) 255s > set.seed(1131) 255s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 255s > library(gstat) 255s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 255s > summary(xx) 255s var1.pred var1.var observed residual 255s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 255s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 255s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 255s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 255s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.501 3rd Qu.: 0.8508 255s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 255s zscore fold x y 255s Min. :-5.1678 Min. : 1.0 Min. :0.00678 Min. :0.0034 255s 1st Qu.:-1.8749 1st Qu.:13.2 1st Qu.:0.23966 1st Qu.:0.2466 255s Median : 0.2453 Median :25.5 Median :0.48668 Median :0.4525 255s Mean : 0.0167 Mean :25.5 Mean :0.49966 Mean :0.4969 255s 3rd Qu.: 2.0201 3rd Qu.:37.8 3rd Qu.:0.74730 3rd Qu.:0.7394 255s Max. : 7.3541 Max. :50.0 Max. :0.98754 Max. :0.9872 255s z 255s Min. :0.00164 255s 1st Qu.:0.18646 255s Median :0.44850 255s Mean :0.47142 255s 3rd Qu.:0.72403 255s Max. :0.99420 255s > 255s BEGIN TEST fit.R 255s 255s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 255s Copyright (C) 2025 The R Foundation for Statistical Computing 255s Platform: x86_64-pc-linux-gnu 255s 255s R is free software and comes with ABSOLUTELY NO WARRANTY. 255s You are welcome to redistribute it under certain conditions. 255s Type 'license()' or 'licence()' for distribution details. 255s 255s R is a collaborative project with many contributors. 255s Type 'contributors()' for more information and 255s 'citation()' on how to cite R or R packages in publications. 255s 255s Type 'demo()' for some demos, 'help()' for on-line help, or 255s 'help.start()' for an HTML browser interface to help. 255s Type 'q()' to quit R. 255s 255s > library(sp) 255s > data(meuse) 255s > library(gstat) 256s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 256s > v$gamma=c(0.5,1,2,3,3) 256s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 256s Warning message: 256s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 256s partial sill or nugget fixed at zero value 256s model psill range 256s 1 Nug 0.000000 0.00 256s 2 Sph 7.878195 1567.77 256s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 256s model psill range 256s 1 Nug 0.000000 0.00 256s 2 Sph 7.878195 1567.77 256s > 256s BEGIN TEST krige0.R 256s 256s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 256s Copyright (C) 2025 The R Foundation for Statistical Computing 256s Platform: x86_64-pc-linux-gnu 256s 256s R is free software and comes with ABSOLUTELY NO WARRANTY. 256s You are welcome to redistribute it under certain conditions. 256s Type 'license()' or 'licence()' for distribution details. 256s 256s R is a collaborative project with many contributors. 256s Type 'contributors()' for more information and 256s 'citation()' on how to cite R or R packages in publications. 256s 256s Type 'demo()' for some demos, 'help()' for on-line help, or 256s 'help.start()' for an HTML browser interface to help. 256s Type 'q()' to quit R. 256s 256s > # test -- load data: 256s > library(sp) 256s > data(meuse) 256s > coordinates(meuse) = ~x+y 256s > data(meuse.grid) 256s > gridded(meuse.grid) = ~x+y 256s > 256s > library(gstat) 256s > # test -- idw 256s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 256s > x <- idw(zinc~1, meuse, meuse.grid) 256s [inverse distance weighted interpolation] 256s > all.equal(x$var1.pred, meuse.grid$idw) 256s [1] TRUE 256s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 256s > v = vgm(1, "Exp", 500) 256s > # test sk: 256s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 256s > rownames(x0$pred)=NULL 256s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 256s [using simple kriging] 256s > all.equal(x$var1.pred, x0$pred[,1]) 256s [1] TRUE 256s > all.equal(x$var1.var, x0$var) 256s [1] TRUE 256s > # test ok: 256s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 257s > rownames(x0$pred)=NULL 257s > names(x0$var)=NULL 257s > x <- krige(zinc~1, meuse, meuse.grid, v) 257s [using ordinary kriging] 257s > all.equal(x$var1.pred, x0$pred[,1]) 257s [1] TRUE 257s > all.equal(x$var1.var, x0$var) 257s [1] TRUE 257s > # test uk: 257s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 257s > rownames(x0$pred)=NULL 257s > names(x0$var)=NULL 257s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 257s [using universal kriging] 257s > all.equal(x$var1.pred, x0$pred[,1]) 257s [1] TRUE 257s > all.equal(x$var1.var, x0$var) 257s [1] TRUE 257s > 257s BEGIN TEST line.R 257s 257s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 257s Copyright (C) 2025 The R Foundation for Statistical Computing 257s Platform: x86_64-pc-linux-gnu 257s 257s R is free software and comes with ABSOLUTELY NO WARRANTY. 257s You are welcome to redistribute it under certain conditions. 257s Type 'license()' or 'licence()' for distribution details. 257s 257s R is a collaborative project with many contributors. 257s Type 'contributors()' for more information and 257s 'citation()' on how to cite R or R packages in publications. 257s 257s Type 'demo()' for some demos, 'help()' for on-line help, or 257s 'help.start()' for an HTML browser interface to help. 257s Type 'q()' to quit R. 257s 257s > options(digits=5) 257s > library(sp) 257s > data(meuse.grid) 257s > gridded(meuse.grid) = ~x+y 257s > data(meuse) 257s > coordinates(meuse) = ~x+y 257s > 257s > # choose arbitrary line over the grid: 257s > image(meuse.grid["dist"],axes=T) 257s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 257s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 257s > plot(Sl,add=T,col='green') 257s > 257s > # use the default spsample arguments of predict.gstat: 257s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 257s > plot(pts, pch=3, cex=.2, add=T) 257s > 257s > library(gstat) 257s > v = vgm(.6, "Sph", 900, .06) 257s > out1 = krige(log(zinc)~1, meuse, Sl, v) 257s [using ordinary kriging] 257s > out1 257s An object of class "SpatialLinesDataFrame" 257s Slot "data": 257s x y var1.pred var1.var 257s a 180333 332167 6.1618 0.008025 257s 257s Slot "lines": 257s [[1]] 257s An object of class "Lines" 257s Slot "Lines": 257s [[1]] 257s An object of class "Line" 257s Slot "coords": 257s [,1] [,2] 257s [1,] 180000 331000 257s [2,] 180000 332000 257s [3,] 181000 333500 257s 257s 257s 257s Slot "ID": 257s [1] "a" 257s 257s 257s 257s Slot "bbox": 257s min max 257s x 180000 181000 257s y 331000 333500 257s 257s Slot "proj4string": 257s Coordinate Reference System: 257s Deprecated Proj.4 representation: NA 257s 257s > 257s > points(180333,332167,pch=3,cex=2) 257s > 257s > # use the same line as block discretization, and predict for (0,0) 257s > # (because the block discretizing points are not centered) 257s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 257s [using ordinary kriging] 257s > out2 257s coordinates var1.pred var1.var 257s 1 (0, 0) 6.1618 0.008025 257s > 257s > compare.krigingLines = function(formula, data, newdata, model) { 257s + out1 = krige(formula, data, newdata, model) 257s + pts = spsample(newdata, n=500, 'regular', offset=.5) 257s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 257s + print("difference:") 257s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 257s + } 257s > 257s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 257s [using ordinary kriging] 257s [using ordinary kriging] 257s [1] "difference:" 257s var1.pred var1.var 257s a 0 0 257s > 257s > # one line, consisting of two line segments: 257s > pp2 = rbind(c(181000,333500),c(181000,332500)) 257s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 257s > krige(log(zinc)~1, meuse, Sl2, v) 257s [using ordinary kriging] 257s An object of class "SpatialLinesDataFrame" 257s Slot "data": 257s x y var1.pred var1.var 257s a 180667 332583 6.0424 0.0053191 257s 257s Slot "lines": 257s [[1]] 257s An object of class "Lines" 257s Slot "Lines": 257s [[1]] 257s An object of class "Line" 257s Slot "coords": 257s [,1] [,2] 257s [1,] 180000 331000 257s [2,] 180000 332000 257s [3,] 181000 333500 257s 257s 257s [[2]] 257s An object of class "Line" 257s Slot "coords": 257s [,1] [,2] 257s [1,] 181000 333500 257s [2,] 181000 332500 257s 257s 257s 257s Slot "ID": 257s [1] "a" 257s 257s 257s 257s Slot "bbox": 257s min max 257s x 180000 181000 257s y 331000 333500 257s 257s Slot "proj4string": 257s Coordinate Reference System: 257s Deprecated Proj.4 representation: NA 257s 257s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 257s [using ordinary kriging] 257s [using ordinary kriging] 257s [1] "difference:" 257s var1.pred var1.var 257s a 0 0 257s > 257s > # two seperate line segments: 257s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 257s > krige(log(zinc)~1, meuse, Sl3, v) 257s [using ordinary kriging] 257s An object of class "SpatialLinesDataFrame" 257s Slot "data": 257s x y var1.pred var1.var 257s a 180333 332167 6.1618 0.008025 257s b 181000 333000 5.7060 0.011043 257s 257s Slot "lines": 257s [[1]] 257s An object of class "Lines" 257s Slot "Lines": 257s [[1]] 257s An object of class "Line" 257s Slot "coords": 257s [,1] [,2] 257s [1,] 180000 331000 257s [2,] 180000 332000 257s [3,] 181000 333500 257s 257s 257s 257s Slot "ID": 257s [1] "a" 257s 257s 257s [[2]] 257s An object of class "Lines" 257s Slot "Lines": 257s [[1]] 257s An object of class "Line" 257s Slot "coords": 257s [,1] [,2] 257s [1,] 181000 333500 257s [2,] 181000 332500 257s 257s 257s 257s Slot "ID": 257s [1] "b" 257s 257s 257s 257s Slot "bbox": 257s min max 257s x 180000 181000 257s y 331000 333500 257s 257s Slot "proj4string": 257s Coordinate Reference System: 257s Deprecated Proj.4 representation: NA 257s 257s > 257s BEGIN TEST merge.R 257s 257s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 257s Copyright (C) 2025 The R Foundation for Statistical Computing 257s Platform: x86_64-pc-linux-gnu 257s 257s R is free software and comes with ABSOLUTELY NO WARRANTY. 257s You are welcome to redistribute it under certain conditions. 257s Type 'license()' or 'licence()' for distribution details. 257s 257s R is a collaborative project with many contributors. 257s Type 'contributors()' for more information and 257s 'citation()' on how to cite R or R packages in publications. 257s 257s Type 'demo()' for some demos, 'help()' for on-line help, or 257s 'help.start()' for an HTML browser interface to help. 257s Type 'q()' to quit R. 257s 258s > options(digits=6) 258s > # illustrates the use of merge, for merging parameters accross variables: 258s > # Z1=m+e1(s) 258s > # Z2=m+e2(s) 258s > # Z1 and Z2 each have a different variogram, but share the parameter m 258s > # see documentation of gstat() function 258s > library(gstat) 258s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 258s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 258s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 258s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 258s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 258s > predict(g, data.frame(x=1,y=1), debug = 32) 258s Intrinsic Correlation found. Good. 258s [using ordinary cokriging] 258s we're at location X: 1 Y: 1 Z: 0 258s zero block size 258s we're at point X: 1 Y: 1 Z: 0 258s 258s # X: 258s #Matrix: 4 by 1 258s rbind( 258s c( 1.000000), # row 1 258s c( 1.000000), # row 2 258s c( 1.000000), # row 3 258s c( 1.000000) # row 4 258s ) 258s [using generalized covariances: max_val - semivariance()] 258s # Covariances (x_i, x_j) matrix C (upper triangle): 258s #Matrix: 4 by 4 258s rbind( 258s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 258s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 258s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 258s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 258s ) 258s 258s # glm->C, Choleski decomposed:: 258s #Matrix: 4 by 4 258s rbind( 258s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 258s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 258s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 258s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 258s ) 258s 258s # X'C-1 X: 258s #Matrix: 1 by 1 258s rbind( 258s c( 3.245289) # row 1 258s ) 258s 258s # beta: 258s #Vector: dim: 1 258s c( 2.500000) 258s # Cov(beta), (X'C-1 X)-1: 258s #Matrix: 1 by 1 258s rbind( 258s c( 0.308139) # row 1 258s ) 258s 258s # Corr(beta): 258s #Matrix: 1 by 1 258s rbind( 258s c( 1.000000) # row 1 258s ) 258s 258s # X0 (X values at prediction location x0): 258s #Matrix: 1 by 2 258s rbind( 258s c( 1.000000, 1.000000) # row 1 258s ) 258s 258s # BLUE(mu), E(y(x0)) = X0'beta: 258s #Vector: dim: 2 258s c( 2.500000, 2.500000) 258s # Covariances (x_i, x_0), C0: 258s #Matrix: 4 by 2 258s rbind( 258s c( 0.243117, 0.121558), # row 1 258s c( 0.243117, 0.121558), # row 2 258s c( 0.121558, 0.243117), # row 3 258s c( 0.121558, 0.243117) # row 4 258s ) 258s 258s # C-1 C0: 258s #Matrix: 4 by 2 258s rbind( 258s c( 0.206482, 0.089387), # row 1 258s c( 0.206482, 0.089387), # row 2 258s c( 0.089387, 0.206482), # row 3 258s c( 0.089387, 0.206482) # row 4 258s ) 258s 258s # [a] Cov_ij(B,B) or Cov_ij(0,0): 258s #Matrix: 2 by 2 258s rbind( 258s c( 1.000000, 0.500000), # row 1 258s c( 0.500000, 1.000000) # row 2 258s ) 258s 258s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 258s #Matrix: 2 by 2 258s rbind( 258s c( 0.051360, 0.051360), # row 1 258s c( 0.051360, 0.051360) # row 2 258s ) 258s 258s # [b] c0'C-1 c0: 258s #Matrix: 2 by 2 258s rbind( 258s c( 0.122130, 0.093662), # row 1 258s c( 0.093662, 0.122130) # row 2 258s ) 258s 258s # Best Linear Unbiased Predictor: 258s #Vector: dim: 2 258s c( 2.031619, 2.968381) 258s # MSPE ([a]-[b]+[c]): 258s #Matrix: 2 by 2 258s rbind( 258s c( 0.929230, 0.457698), # row 1 258s c( 0.457698, 0.929230) # row 2 258s ) 258s 258s # kriging weights: 258s #Matrix: 4 by 2 258s rbind( 258s c( 0.308548, 0.191452), # row 1 258s c( 0.308548, 0.191452), # row 2 258s c( 0.191452, 0.308548), # row 3 258s c( 0.191452, 0.308548) # row 4 258s ) 258s 258s 258s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 258s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 258s > 258s > # Z1 and Z2 share a regression slope: 258s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 258s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 258s + merge=list(c("d1",2,"d2",2))) 258s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 258s > predict(g, data.frame(x=1,y=1), debug = 32) 258s Intrinsic Correlation found. Good. 258s [using universal cokriging] 258s we're at location X: 1 Y: 1 Z: 0 258s zero block size 258s we're at point X: 1 Y: 1 Z: 0 258s 258s # X: 258s #Matrix: 4 by 3 258s rbind( 258s c( 1.000000, 0.000000, 0.000000), # row 1 258s c( 1.000000, 2.000000, 0.000000), # row 2 258s c( 0.000000, 0.000000, 1.000000), # row 3 258s c( 0.000000, 2.000000, 1.000000) # row 4 258s ) 258s [using generalized covariances: max_val - semivariance()] 258s # Covariances (x_i, x_j) matrix C (upper triangle): 258s #Matrix: 4 by 4 258s rbind( 258s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 258s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 258s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 258s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 258s ) 258s 258s # glm->C, Choleski decomposed:: 258s #Matrix: 4 by 4 258s rbind( 258s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 258s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 258s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 258s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 258s ) 258s 258s # X'C-1 X: 258s #Matrix: 3 by 3 258s rbind( 258s c( 1.774607, 1.622645, -0.151962), # row 1 258s c( 1.622645, 7.676050, 1.622645), # row 2 258s c(-0.151962, 1.622645, 1.774607) # row 3 258s ) 258s 258s # beta: 258s #Vector: dim: 3 258s c( 0.000000, 0.500000, 4.000000) 258s # Cov(beta), (X'C-1 X)-1: 258s #Matrix: 3 by 3 258s rbind( 258s c( 0.793363, -0.225695, 0.274305), # row 1 258s c(-0.225695, 0.225695, -0.225695), # row 2 258s c( 0.274305, -0.225695, 0.793363) # row 3 258s ) 258s 258s # Corr(beta): 258s #Matrix: 3 by 3 258s rbind( 258s c( 1.000000, -0.533366, 0.345750), # row 1 258s c(-0.533366, 1.000000, -0.533366), # row 2 258s c( 0.345750, -0.533366, 1.000000) # row 3 258s ) 258s 258s # X0 (X values at prediction location x0): 258s #Matrix: 3 by 2 258s rbind( 258s c( 1.000000, 0.000000), # row 1 258s c( 1.000000, 1.000000), # row 2 258s c( 0.000000, 1.000000) # row 3 258s ) 258s 258s # BLUE(mu), E(y(x0)) = X0'beta: 258s #Vector: dim: 2 258s c( 0.500000, 4.500000) 258s # Covariances (x_i, x_0), C0: 258s #Matrix: 4 by 2 258s rbind( 258s c( 0.243117, 0.121558), # row 1 258s c( 0.243117, 0.121558), # row 2 258s c( 0.121558, 0.243117), # row 3 258s c( 0.121558, 0.243117) # row 4 258s ) 258s 258s # C-1 C0: 258s #Matrix: 4 by 2 258s rbind( 258s c( 0.206482, 0.089387), # row 1 258s c( 0.206482, 0.089387), # row 2 258s c( 0.089387, 0.206482), # row 3 258s c( 0.089387, 0.206482) # row 4 258s ) 258s 258s # [a] Cov_ij(B,B) or Cov_ij(0,0): 258s #Matrix: 2 by 2 258s rbind( 258s c( 1.000000, 0.500000), # row 1 258s c( 0.500000, 1.000000) # row 2 258s ) 258s 258s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 258s #Matrix: 2 by 2 258s rbind( 258s c( 0.203564, -0.100844), # row 1 258s c(-0.100844, 0.203564) # row 2 258s ) 258s 258s # [b] c0'C-1 c0: 258s #Matrix: 2 by 2 258s rbind( 258s c( 0.122130, 0.093662), # row 1 258s c( 0.093662, 0.122130) # row 2 258s ) 258s 258s # Best Linear Unbiased Predictor: 258s #Vector: dim: 2 258s c( 0.500000, 4.500000) 258s # MSPE ([a]-[b]+[c]): 258s #Matrix: 2 by 2 258s rbind( 258s c( 1.081434, 0.305494), # row 1 258s c( 0.305494, 1.081434) # row 2 258s ) 258s 258s # kriging weights: 258s #Matrix: 4 by 2 258s rbind( 258s c( 0.500000, 0.000000), # row 1 258s c( 0.500000, 0.000000), # row 2 258s c( 0.000000, 0.500000), # row 3 258s c( 0.000000, 0.500000) # row 4 258s ) 258s 258s 258s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 258s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 258s > 258s BEGIN TEST na.action.R 258s 258s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 258s Copyright (C) 2025 The R Foundation for Statistical Computing 258s Platform: x86_64-pc-linux-gnu 258s 258s R is free software and comes with ABSOLUTELY NO WARRANTY. 258s You are welcome to redistribute it under certain conditions. 258s Type 'license()' or 'licence()' for distribution details. 258s 258s R is a collaborative project with many contributors. 258s Type 'contributors()' for more information and 258s 'citation()' on how to cite R or R packages in publications. 258s 258s Type 'demo()' for some demos, 'help()' for on-line help, or 258s 'help.start()' for an HTML browser interface to help. 258s Type 'q()' to quit R. 258s 258s > library(sp) 258s > 258s > data(meuse) 258s > data(meuse.grid) 258s > 258s > set.seed(13131) # reproduce results 258s > 258s > # select 10 random rows; 258s > # create two missing values in the coordinates: 258s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 258s > m[c(2,8), "x"] = NA 258s > 258s > library(gstat) 258s > ## this is not allowed anymore: 258s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 258s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 258s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 258s missing values in object 258s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 258s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 258s missing values in object 258s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 258s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 258s missing values in object 258s > 258s > # select 10 random rows; 258s > # create two missing values in the regressor variable: 258s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 258s > m[c(3,7), "dist"] = NA 258s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 258s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 258s missing values in object 258s [ordinary or weighted least squares prediction] 258s x y var1.pred var1.var 258s 1 178860 330860 6.530134 0.2415196 258s 2 180260 331860 5.389567 0.2406041 258s 3 180100 331860 NA NA 258s 4 180460 331820 5.213370 0.2417197 258s 5 179660 330580 5.550859 0.2398778 258s 6 179740 330300 6.108648 0.2395392 258s 7 180220 330660 NA NA 258s 8 178580 329820 6.533801 0.2415453 258s 9 180100 331900 5.580264 0.2397758 258s 10 180780 331900 5.095967 0.2426499 258s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 258s [ordinary or weighted least squares prediction] 258s x y var1.pred var1.var 258s 1877 178860 330860 6.530134 0.2415196 258s 1015 180260 331860 5.389567 0.2406041 258s 1056 180460 331820 5.213370 0.2417197 258s 2199 179660 330580 5.550859 0.2398778 258s 2556 179740 330300 6.108648 0.2395392 258s 2985 178580 329820 6.533801 0.2415453 258s 975 180100 331900 5.580264 0.2397758 258s 992 180780 331900 5.095967 0.2426499 258s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 258s [ordinary or weighted least squares prediction] 258s x y var1.pred var1.var 258s 1877 178860 330860 6.530134 0.2415196 258s 1015 180260 331860 5.389567 0.2406041 258s 1056 180460 331820 5.213370 0.2417197 258s 2199 179660 330580 5.550859 0.2398778 258s 2556 179740 330300 6.108648 0.2395392 258s 2985 178580 329820 6.533801 0.2415453 258s 975 180100 331900 5.580264 0.2397758 258s 992 180780 331900 5.095967 0.2426499 258s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 258s > 258s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 258s missing values in object 258s BEGIN TEST rings.R 258s 258s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 258s Copyright (C) 2025 The R Foundation for Statistical Computing 258s Platform: x86_64-pc-linux-gnu 258s 258s R is free software and comes with ABSOLUTELY NO WARRANTY. 258s You are welcome to redistribute it under certain conditions. 258s Type 'license()' or 'licence()' for distribution details. 258s 258s R is a collaborative project with many contributors. 258s Type 'contributors()' for more information and 258s 'citation()' on how to cite R or R packages in publications. 258s 258s Type 'demo()' for some demos, 'help()' for on-line help, or 258s 'help.start()' for an HTML browser interface to help. 258s Type 'q()' to quit R. 258s 259s > library(sp) 259s > library(gstat) 259s > set.seed(13331) 259s > 259s > x = runif(10) 259s > y = runif(10) 259s > z = rnorm(10) 259s > d = data.frame(x=x,y=y,z=z) 259s > bl = c(1,1) 259s > 259s > nd = data.frame(x=.5, y=.5) 259s > 259s > # single block: 259s > library(sp) 259s > coordinates(d) = ~x+y 259s > nd = SpatialPoints(nd) 259s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 259s + set = list(nb=4)) 259s [using ordinary kriging] 259s > 259s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 259s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 259s > a = data.frame(a = 1, b = 2) 259s > rownames(a) = "xx" 259s > r1df = SpatialPolygonsDataFrame(r1, a) 259s > 259s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 259s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 259s > yy = predict(g, r1df, block = bl, sps.args = args) 259s [using ordinary kriging] 259s > 259s > xx = as.data.frame(xx) 259s > yy = as.data.frame(yy) 259s > row.names(xx) = row.names(yy) 259s > print(all.equal(xx,yy)) 259s [1] TRUE 259s > 259s > ## multiple blocks of equal size: 259s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 259s > nd = SpatialPoints(nd) 259s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 259s + set = list(nb=4)) 259s [using ordinary kriging] 259s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 259s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 259s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 259s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 259s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 259s > r1 = SpatialPolygons(list( 259s + Polygons(list(Polygon(ring0)), ID = "x0"), 259s + Polygons(list(Polygon(ring1)), ID = "x1"), 259s + Polygons(list(Polygon(ring2)), ID = "x2"), 259s + Polygons(list(Polygon(ring3)), ID = "x3"), 259s + Polygons(list(Polygon(ring4)), ID = "x4") 259s + )) 259s > df = data.frame(a=rep(1,5), b= rep(1,5)) 259s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 259s > r1df = SpatialPolygonsDataFrame(r1, df) 259s > 259s > yy = predict(g, r1, block = bl, sps.args = args) 259s [using ordinary kriging] 259s > xx = as.data.frame(xx) 259s > yy = as.data.frame(yy) 259s > row.names(xx) = row.names(yy) 259s > all.equal(xx, yy) 259s [1] TRUE 259s > 259s > ## multiple blocks of equal size: 259s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 259s > yy = predict(g, r1, block = bl, sps.args = args) 259s [using ordinary kriging] 259s > xx = as.data.frame(xx) 259s > yy = as.data.frame(yy) 259s > row.names(xx) = row.names(yy) 259s > print(all.equal(xx, yy)) 259s [1] TRUE 259s > 259s > ## multiple blocks of varying size: 259s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 259s > nd = SpatialPoints(nd) 259s > bl = c(1,1) 259s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 259s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 259s + set = list(nb=4)) 259s [using ordinary kriging] 259s > bl = c(2,2) 259s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 259s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 259s + set = list(nb=4)) 259s [using ordinary kriging] 259s > bl = c(3,3) 259s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 259s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 259s + set = list(nb=4)) 259s [using ordinary kriging] 259s > r1 = SpatialPolygons(list( 259s + Polygons(list(Polygon(ring0)), ID = "x0"), 259s + Polygons(list(Polygon(ring1)), ID = "x1"), 259s + Polygons(list(Polygon(ring2)), ID = "x2") 259s + )) 259s > df = data.frame(a = rep(1,3), b = rep(1,3)) 259s > rownames(df) = c("x0", "x1", "x2") 259s > r1df = SpatialPolygonsDataFrame(r1, df) 259s > 259s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 259s > yy = predict(g, r1df, block = bl, sps.args = args) 259s [using ordinary kriging] 259s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 259s > row.names(xx) = 1:3 259s > xx = as.data.frame(xx) 259s > yy = as.data.frame(yy) 259s > row.names(xx) = row.names(yy) 259s > print(all.equal(xx, yy)) 259s [1] TRUE 259s > 259s BEGIN TEST sim.R 259s 259s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 259s Copyright (C) 2025 The R Foundation for Statistical Computing 259s Platform: x86_64-pc-linux-gnu 259s 259s R is free software and comes with ABSOLUTELY NO WARRANTY. 259s You are welcome to redistribute it under certain conditions. 259s Type 'license()' or 'licence()' for distribution details. 259s 259s R is a collaborative project with many contributors. 259s Type 'contributors()' for more information and 259s 'citation()' on how to cite R or R packages in publications. 259s 259s Type 'demo()' for some demos, 'help()' for on-line help, or 259s 'help.start()' for an HTML browser interface to help. 259s Type 'q()' to quit R. 259s 259s > options(digits=6) 259s > library(sp) 259s > data(meuse) 259s > set.seed(158229572) 259s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 259s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 259s > library(gstat) 259s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 259s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 259s + block = c(40,40), nmax = 40, nsim = 10) 259s drawing 10 GLS realisations of beta... 259s [using conditional Gaussian simulation] 259s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 259s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 259s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 259s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 259s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 259s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 259s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 259s sim8 sim9 sim10 259s 1 294.107 113.347 279.991 259s 2 776.498 724.160 901.692 259s 3 338.021 630.244 140.272 259s 4 127.301 957.242 444.007 259s 5 533.773 748.144 623.960 259s 6 1084.170 537.604 -214.972 259s > 259s BEGIN TEST stars.R 259s 259s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 259s Copyright (C) 2025 The R Foundation for Statistical Computing 259s Platform: x86_64-pc-linux-gnu 259s 259s R is free software and comes with ABSOLUTELY NO WARRANTY. 259s You are welcome to redistribute it under certain conditions. 259s Type 'license()' or 'licence()' for distribution details. 259s 259s R is a collaborative project with many contributors. 259s Type 'contributors()' for more information and 259s 'citation()' on how to cite R or R packages in publications. 259s 259s Type 'demo()' for some demos, 'help()' for on-line help, or 259s 'help.start()' for an HTML browser interface to help. 259s Type 'q()' to quit R. 259s 260s > Sys.setenv(TZ = "UTC") 260s > 260s > # 0. using sp: 260s > 260s > suppressPackageStartupMessages(library(sp)) 260s > demo(meuse, ask = FALSE) 260s 260s 260s demo(meuse) 260s ---- ~~~~~ 260s 260s > require(sp) 260s 260s > crs = CRS("EPSG:28992") 260s 260s > data("meuse") 260s 260s > coordinates(meuse) <- ~x+y 260s 260s > proj4string(meuse) <- crs 260s 260s > data("meuse.grid") 260s 260s > coordinates(meuse.grid) <- ~x+y 260s 260s > gridded(meuse.grid) <- TRUE 260s 260s > proj4string(meuse.grid) <- crs 260s 260s > data("meuse.riv") 260s 260s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 260s 260s > proj4string(meuse.riv) <- crs 260s 260s > data("meuse.area") 260s 260s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 260s 260s > proj4string(meuse.area) <- crs 260s > suppressPackageStartupMessages(library(gstat)) 260s > v = variogram(log(zinc)~1, meuse) 260s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 260s model psill range 260s 1 Nug 0.05066243 0.0000 260s 2 Sph 0.59060780 897.0209 260s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 260s [using ordinary kriging] 260s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 260s [using ordinary kriging] 260s > 260s > # 1. using sf: 260s > suppressPackageStartupMessages(library(sf)) 260s > demo(meuse_sf, ask = FALSE, echo = FALSE) 260s > # reloads meuse as data.frame, so 260s > demo(meuse, ask = FALSE) 260s 260s 260s demo(meuse) 260s ---- ~~~~~ 260s 260s > require(sp) 260s 260s > crs = CRS("EPSG:28992") 260s 260s > data("meuse") 260s 260s > coordinates(meuse) <- ~x+y 260s 260s > proj4string(meuse) <- crs 260s 260s > data("meuse.grid") 260s 260s > coordinates(meuse.grid) <- ~x+y 260s 260s > gridded(meuse.grid) <- TRUE 260s 260s > proj4string(meuse.grid) <- crs 260s 260s > data("meuse.riv") 260s 260s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 260s 260s > proj4string(meuse.riv) <- crs 260s 260s > data("meuse.area") 260s 260s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 260s 260s > proj4string(meuse.area) <- crs 260s > 260s > v = variogram(log(zinc)~1, meuse_sf) 260s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 260s model psill range 260s 1 Nug 0.05066243 0.0000 260s 2 Sph 0.59060780 897.0209 260s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 261s [using ordinary kriging] 261s > 261s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 261s [1] TRUE 261s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 261s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 261s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 261s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 261s > 261s > # 2. using stars for grid: 261s > 261s > suppressPackageStartupMessages(library(stars)) 261s > st = st_as_stars(meuse.grid) 261s > st_crs(st) 261s Coordinate Reference System: 261s User input: Amersfoort / RD New 261s wkt: 261s PROJCRS["Amersfoort / RD New", 261s BASEGEOGCRS["Amersfoort", 261s DATUM["Amersfoort", 261s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 261s LENGTHUNIT["metre",1]]], 261s PRIMEM["Greenwich",0, 261s ANGLEUNIT["degree",0.0174532925199433]], 261s ID["EPSG",4289]], 261s CONVERSION["RD New", 261s METHOD["Oblique Stereographic", 261s ID["EPSG",9809]], 261s PARAMETER["Latitude of natural origin",52.1561605555556, 261s ANGLEUNIT["degree",0.0174532925199433], 261s ID["EPSG",8801]], 261s PARAMETER["Longitude of natural origin",5.38763888888889, 261s ANGLEUNIT["degree",0.0174532925199433], 261s ID["EPSG",8802]], 261s PARAMETER["Scale factor at natural origin",0.9999079, 261s SCALEUNIT["unity",1], 261s ID["EPSG",8805]], 261s PARAMETER["False easting",155000, 261s LENGTHUNIT["metre",1], 261s ID["EPSG",8806]], 261s PARAMETER["False northing",463000, 261s LENGTHUNIT["metre",1], 261s ID["EPSG",8807]]], 261s CS[Cartesian,2], 261s AXIS["easting (X)",east, 261s ORDER[1], 261s LENGTHUNIT["metre",1]], 261s AXIS["northing (Y)",north, 261s ORDER[2], 261s LENGTHUNIT["metre",1]], 261s USAGE[ 261s SCOPE["Engineering survey, topographic mapping."], 261s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 261s BBOX[50.75,3.2,53.7,7.22]], 261s ID["EPSG",28992]] 261s > 261s > # compare inputs: 261s > sp = as(st, "Spatial") 261s > fullgrid(meuse.grid) = TRUE 261s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 261s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 261s [2] "Names: 1 string mismatch" 261s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 261s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 261s [2] "Names: 1 string mismatch" 261s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 261s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 261s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 261s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 261s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 261s > 261s > # kriging: 261s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 261s > k_st = if (Sys.getenv("USER") == "travis") { 261s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 261s + } else { 261s + krige(log(zinc)~1, meuse_sf, st, v.fit) 261s + } 261s [using ordinary kriging] 261s > k_st 261s stars object with 2 dimensions and 2 attributes 261s attribute(s): 261s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 261s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 261s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 261s dimension(s): 261s from to offset delta x/y 261s x 1 78 178440 40 [x] 261s y 1 104 333760 -40 [y] 261s > 261s > # handle factors, when going to stars? 261s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 261s > st_as_stars(k_sp_grd) 261s stars object with 2 dimensions and 3 attributes 261s attribute(s): 261s var1.pred var1.var cls 261s Min. :4.777 Min. :0.0855 (0,5]: 316 261s 1st Qu.:5.238 1st Qu.:0.1373 (5,6]:1778 261s Median :5.573 Median :0.1622 (6,7]: 962 261s Mean :5.707 Mean :0.1853 (7,8]: 47 261s 3rd Qu.:6.172 3rd Qu.:0.2116 (8,9]: 0 261s Max. :7.440 Max. :0.5003 NA's :5009 261s NA's :5009 NA's :5009 261s dimension(s): 261s from to offset delta refsys x/y 261s x 1 78 178440 40 Amersfoort / RD New [x] 261s y 1 104 333760 -40 Amersfoort / RD New [y] 261s > if (require(raster, quietly = TRUE)) { 261s + print(st_as_stars(raster::stack(k_sp_grd))) # check 261s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 261s + } 264s stars object with 3 dimensions and 1 attribute 264s attribute(s): 264s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 264s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 264s dimension(s): 264s from to offset delta refsys values 264s x 1 78 178440 40 Amersfoort / RD New NULL 264s y 1 104 333760 -40 Amersfoort / RD New NULL 264s band 1 3 NA NA NA var1.pred, var1.var , cls 264s x/y 264s x [x] 264s y [y] 264s band 264s [1] TRUE 264s > 264s > suppressPackageStartupMessages(library(spacetime)) 264s > 264s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 264s > n = 4 264s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 264s + stars:::create_dimensions(list( 264s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 264s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 264s + time = stars:::create_dimension(values = tm + 1:n)), 264s + raster = stars:::get_raster(dimensions = c("x", "y"))) 264s + ) 264s > s 264s stars object with 3 dimensions and 1 attribute 264s attribute(s): 264s Min. 1st Qu. Median Mean 3rd Qu. Max. 264s foo 1 16.75 32.5 32.5 48.25 64 264s dimension(s): 264s from to offset delta refsys x/y 264s x 1 4 10 0.5 NA [x] 264s y 1 4 0 -0.7 NA [y] 264s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 264s > 264s > as.data.frame(s) 264s x y time foo 264s 1 10.25 -0.35 2019-02-25 15:37:25 1 264s 2 10.75 -0.35 2019-02-25 15:37:25 2 264s 3 11.25 -0.35 2019-02-25 15:37:25 3 264s 4 11.75 -0.35 2019-02-25 15:37:25 4 264s 5 10.25 -1.05 2019-02-25 15:37:25 5 264s 6 10.75 -1.05 2019-02-25 15:37:25 6 264s 7 11.25 -1.05 2019-02-25 15:37:25 7 264s 8 11.75 -1.05 2019-02-25 15:37:25 8 264s 9 10.25 -1.75 2019-02-25 15:37:25 9 264s 10 10.75 -1.75 2019-02-25 15:37:25 10 264s 11 11.25 -1.75 2019-02-25 15:37:25 11 264s 12 11.75 -1.75 2019-02-25 15:37:25 12 264s 13 10.25 -2.45 2019-02-25 15:37:25 13 264s 14 10.75 -2.45 2019-02-25 15:37:25 14 264s 15 11.25 -2.45 2019-02-25 15:37:25 15 264s 16 11.75 -2.45 2019-02-25 15:37:25 16 264s 17 10.25 -0.35 2019-02-25 15:37:26 17 264s 18 10.75 -0.35 2019-02-25 15:37:26 18 264s 19 11.25 -0.35 2019-02-25 15:37:26 19 264s 20 11.75 -0.35 2019-02-25 15:37:26 20 264s 21 10.25 -1.05 2019-02-25 15:37:26 21 264s 22 10.75 -1.05 2019-02-25 15:37:26 22 264s 23 11.25 -1.05 2019-02-25 15:37:26 23 264s 24 11.75 -1.05 2019-02-25 15:37:26 24 264s 25 10.25 -1.75 2019-02-25 15:37:26 25 264s 26 10.75 -1.75 2019-02-25 15:37:26 26 264s 27 11.25 -1.75 2019-02-25 15:37:26 27 264s 28 11.75 -1.75 2019-02-25 15:37:26 28 264s 29 10.25 -2.45 2019-02-25 15:37:26 29 264s 30 10.75 -2.45 2019-02-25 15:37:26 30 264s 31 11.25 -2.45 2019-02-25 15:37:26 31 264s 32 11.75 -2.45 2019-02-25 15:37:26 32 264s 33 10.25 -0.35 2019-02-25 15:37:27 33 264s 34 10.75 -0.35 2019-02-25 15:37:27 34 264s 35 11.25 -0.35 2019-02-25 15:37:27 35 264s 36 11.75 -0.35 2019-02-25 15:37:27 36 264s 37 10.25 -1.05 2019-02-25 15:37:27 37 264s 38 10.75 -1.05 2019-02-25 15:37:27 38 264s 39 11.25 -1.05 2019-02-25 15:37:27 39 264s 40 11.75 -1.05 2019-02-25 15:37:27 40 264s 41 10.25 -1.75 2019-02-25 15:37:27 41 264s 42 10.75 -1.75 2019-02-25 15:37:27 42 264s 43 11.25 -1.75 2019-02-25 15:37:27 43 264s 44 11.75 -1.75 2019-02-25 15:37:27 44 264s 45 10.25 -2.45 2019-02-25 15:37:27 45 264s 46 10.75 -2.45 2019-02-25 15:37:27 46 264s 47 11.25 -2.45 2019-02-25 15:37:27 47 264s 48 11.75 -2.45 2019-02-25 15:37:27 48 264s 49 10.25 -0.35 2019-02-25 15:37:28 49 264s 50 10.75 -0.35 2019-02-25 15:37:28 50 264s 51 11.25 -0.35 2019-02-25 15:37:28 51 264s 52 11.75 -0.35 2019-02-25 15:37:28 52 264s 53 10.25 -1.05 2019-02-25 15:37:28 53 264s 54 10.75 -1.05 2019-02-25 15:37:28 54 264s 55 11.25 -1.05 2019-02-25 15:37:28 55 264s 56 11.75 -1.05 2019-02-25 15:37:28 56 264s 57 10.25 -1.75 2019-02-25 15:37:28 57 264s 58 10.75 -1.75 2019-02-25 15:37:28 58 264s 59 11.25 -1.75 2019-02-25 15:37:28 59 264s 60 11.75 -1.75 2019-02-25 15:37:28 60 264s 61 10.25 -2.45 2019-02-25 15:37:28 61 264s 62 10.75 -2.45 2019-02-25 15:37:28 62 264s 63 11.25 -2.45 2019-02-25 15:37:28 63 264s 64 11.75 -2.45 2019-02-25 15:37:28 64 264s > plot(s, col = sf.colors(), axes = TRUE) 264s > (s.stfdf = as(s, "STFDF")) 264s An object of class "STFDF" 264s Slot "data": 264s foo 264s 1 1 264s 2 2 264s 3 3 264s 4 4 264s 5 5 264s 6 6 264s 7 7 264s 8 8 264s 9 9 264s 10 10 264s 11 11 264s 12 12 264s 13 13 264s 14 14 264s 15 15 264s 16 16 264s 17 17 264s 18 18 264s 19 19 264s 20 20 264s 21 21 264s 22 22 264s 23 23 264s 24 24 264s 25 25 264s 26 26 264s 27 27 264s 28 28 264s 29 29 264s 30 30 264s 31 31 264s 32 32 264s 33 33 264s 34 34 264s 35 35 264s 36 36 264s 37 37 264s 38 38 264s 39 39 264s 40 40 264s 41 41 264s 42 42 264s 43 43 264s 44 44 264s 45 45 264s 46 46 264s 47 47 264s 48 48 264s 49 49 264s 50 50 264s 51 51 264s 52 52 264s 53 53 264s 54 54 264s 55 55 264s 56 56 264s 57 57 264s 58 58 264s 59 59 264s 60 60 264s 61 61 264s 62 62 264s 63 63 264s 64 64 264s 264s Slot "sp": 264s Object of class SpatialPixels 264s Grid topology: 264s cellcentre.offset cellsize cells.dim 264s x 10.25 0.5 4 264s y -2.45 0.7 4 264s SpatialPoints: 264s x y 264s [1,] 10.25 -0.35 264s [2,] 10.75 -0.35 264s [3,] 11.25 -0.35 264s [4,] 11.75 -0.35 264s [5,] 10.25 -1.05 264s [6,] 10.75 -1.05 264s [7,] 11.25 -1.05 264s [8,] 11.75 -1.05 264s [9,] 10.25 -1.75 264s [10,] 10.75 -1.75 264s [11,] 11.25 -1.75 264s [12,] 11.75 -1.75 264s [13,] 10.25 -2.45 264s [14,] 10.75 -2.45 264s [15,] 11.25 -2.45 264s [16,] 11.75 -2.45 264s Coordinate Reference System (CRS) arguments: NA 264s 264s Slot "time": 264s timeIndex 264s 2019-02-25 15:37:25 1 264s 2019-02-25 15:37:26 2 264s 2019-02-25 15:37:27 3 264s 2019-02-25 15:37:28 4 264s 264s Slot "endTime": 264s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 264s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 264s 264s > stplot(s.stfdf, scales = list(draw = TRUE)) 264s > 264s > (s2 = st_as_stars(s.stfdf)) 264s stars object with 3 dimensions and 1 attribute 264s attribute(s): 264s Min. 1st Qu. Median Mean 3rd Qu. Max. 264s foo 1 16.75 32.5 32.5 48.25 64 264s dimension(s): 264s from to offset delta refsys x/y 264s x 1 4 10 0.5 NA [x] 264s y 1 4 -1.11e-16 -0.7 NA [y] 264s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 264s > plot(s2, col = sf.colors(), axes = TRUE) 264s > all.equal(s, s2, check.attributes = FALSE) 264s [1] TRUE 264s > 264s > # multiple simulations: 264s > data(meuse, package = "sp") 264s > data(meuse.grid, package = "sp") 264s > coordinates(meuse.grid) <- ~x+y 264s > gridded(meuse.grid) <- TRUE 264s > meuse.grid = st_as_stars(meuse.grid) 264s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 264s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 264s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 264s > set.seed(123) 264s > ## IGNORE_RDIFF_BEGIN 264s > (p = predict(g, meuse.grid, nsim = 5)) 264s drawing 5 multivariate GLS realisations of beta... 264s [using conditional Gaussian simulation] 264s stars object with 3 dimensions and 2 attributes 264s attribute(s): 264s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 264s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 264s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 264s dimension(s): 264s from to offset delta values x/y 264s x 1 78 178440 40 NULL [x] 264s y 1 104 333760 -40 NULL [y] 264s sample 1 5 NA NA sim1,...,sim5 264s > ## IGNORE_RDIFF_END 264s > 264s BEGIN TEST unproj.R 264s 264s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 264s Copyright (C) 2025 The R Foundation for Statistical Computing 264s Platform: x86_64-pc-linux-gnu 264s 264s R is free software and comes with ABSOLUTELY NO WARRANTY. 264s You are welcome to redistribute it under certain conditions. 264s Type 'license()' or 'licence()' for distribution details. 264s 264s R is a collaborative project with many contributors. 264s Type 'contributors()' for more information and 264s 'citation()' on how to cite R or R packages in publications. 264s 264s Type 'demo()' for some demos, 'help()' for on-line help, or 264s 'help.start()' for an HTML browser interface to help. 264s Type 'q()' to quit R. 264s 264s > # DOI 10.1007/s11004-011-9344-7 264s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 264s > 264s > suppressPackageStartupMessages(library(sp)) 264s > library(gstat) 265s > 265s > if (require(sp, quietly = TRUE) && 265s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 265s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 265s + data(meuse) 265s + coordinates(meuse) = ~x+y 265s + proj4string(meuse) = CRS("+init=epsg:28992") 265s + ll = "+proj=longlat +ellps=WGS84" 265s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 265s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 265s + meuse.ll[1:10,] 265s + variogram(log(zinc)~1, meuse.ll) 265s + 265s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 265s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 265s + 265s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 265s + abline(0,1) 265s + 265s + data(ozone2) 265s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 265s + data.frame(t(ozone2$y)), 265s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 265s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 265s + utm16 = "+proj=utm +zone=16" 265s + # oz.utm = spTransform(oz, utm16) 265s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 265s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 265s + 265s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 265s + 265s + foo <- 265s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 265s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 265s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 265s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 265s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 265s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 265s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 265s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 265s + -11L), class = "data.frame") 265s + 265s + coordinates(foo) <- ~lon+lat 265s + 265s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 265s + 265s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 265s + 265s + cat('==========\nvariogram:\n') 265s + print(head(vg.foo)) 265s + 265s + cat('==========\nspDistsN1 Distances:\n') 265s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 265s + } 265s ========== 265s variogram: 265s dist gamma dir.hor dir.ver id left right 265s 1 3115.1190 8.971063e-04 0 0 var1 2 1 265s 2 1908.0468 1.909846e+01 0 0 var1 3 1 265s 3 1405.6211 1.883757e+01 0 0 var1 3 2 265s 4 1837.5667 1.347749e+01 0 0 var1 4 1 265s 5 1522.8765 1.325847e+01 0 0 var1 4 2 265s 6 119.9386 4.886139e-01 0 0 var1 4 3 265s ========== 265s spDistsN1 Distances: 265s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 265s [8] 3081.7541 4090.4022 665.9348 2683.1516 265s Warning message: 265s In CPL_crs_from_input(x) : 265s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Further messages of this type will be suppressed. 265s > 265s BEGIN TEST variogram.R 266s 266s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 266s Copyright (C) 2025 The R Foundation for Statistical Computing 266s Platform: x86_64-pc-linux-gnu 266s 266s R is free software and comes with ABSOLUTELY NO WARRANTY. 266s You are welcome to redistribute it under certain conditions. 266s Type 'license()' or 'licence()' for distribution details. 266s 266s R is a collaborative project with many contributors. 266s Type 'contributors()' for more information and 266s 'citation()' on how to cite R or R packages in publications. 266s 266s Type 'demo()' for some demos, 'help()' for on-line help, or 266s 'help.start()' for an HTML browser interface to help. 266s Type 'q()' to quit R. 266s 266s > library(sp) 266s > library(gstat) 266s > data(meuse) 266s > variogram(log(zinc)~1, ~x+y, meuse) 266s np dist gamma dir.hor dir.ver id 266s 1 57 79.29244 0.1234479 0 0 var1 266s 2 299 163.97367 0.2162185 0 0 var1 266s 3 419 267.36483 0.3027859 0 0 var1 266s 4 457 372.73542 0.4121448 0 0 var1 266s 5 547 478.47670 0.4634128 0 0 var1 266s 6 533 585.34058 0.5646933 0 0 var1 266s 7 574 693.14526 0.5689683 0 0 var1 266s 8 564 796.18365 0.6186769 0 0 var1 266s 9 589 903.14650 0.6471479 0 0 var1 266s 10 543 1011.29177 0.6915705 0 0 var1 266s 11 500 1117.86235 0.7033984 0 0 var1 266s 12 477 1221.32810 0.6038770 0 0 var1 266s 13 452 1329.16407 0.6517158 0 0 var1 266s 14 457 1437.25620 0.5665318 0 0 var1 266s 15 415 1543.20248 0.5748227 0 0 var1 266s > 266s > coordinates(meuse) <- ~ x + y 266s > variogram(log(zinc)~1, meuse) 266s np dist gamma dir.hor dir.ver id 266s 1 57 79.29244 0.1234479 0 0 var1 266s 2 299 163.97367 0.2162185 0 0 var1 266s 3 419 267.36483 0.3027859 0 0 var1 266s 4 457 372.73542 0.4121448 0 0 var1 266s 5 547 478.47670 0.4634128 0 0 var1 266s 6 533 585.34058 0.5646933 0 0 var1 266s 7 574 693.14526 0.5689683 0 0 var1 266s 8 564 796.18365 0.6186769 0 0 var1 266s 9 589 903.14650 0.6471479 0 0 var1 266s 10 543 1011.29177 0.6915705 0 0 var1 266s 11 500 1117.86235 0.7033984 0 0 var1 266s 12 477 1221.32810 0.6038770 0 0 var1 266s 13 452 1329.16407 0.6517158 0 0 var1 266s 14 457 1437.25620 0.5665318 0 0 var1 266s 15 415 1543.20248 0.5748227 0 0 var1 266s > 266s > ind=seq(1,155,2) 266s > var1= meuse[ind,] 266s > var2= meuse[-ind,] 266s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 266s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 266s > v.cross <- variogram(g) 266s > plot(v.cross) 266s > 266s > 266s BEGIN TEST vdist.R 266s 266s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 266s Copyright (C) 2025 The R Foundation for Statistical Computing 266s Platform: x86_64-pc-linux-gnu 266s 266s R is free software and comes with ABSOLUTELY NO WARRANTY. 266s You are welcome to redistribute it under certain conditions. 266s Type 'license()' or 'licence()' for distribution details. 266s 266s R is a collaborative project with many contributors. 266s Type 'contributors()' for more information and 266s 'citation()' on how to cite R or R packages in publications. 266s 266s Type 'demo()' for some demos, 'help()' for on-line help, or 266s 'help.start()' for an HTML browser interface to help. 266s Type 'q()' to quit R. 266s 266s > library(sp) 266s > library(gstat) 266s > 266s > data(meuse) 266s > coordinates(meuse) = ~x+y 266s > data(meuse.grid) 266s > gridded(meuse.grid) = ~x+y 266s > 266s > mg = meuse.grid 266s > gridded(mg) = FALSE 266s > mg= mg[1500,] 266s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 266s + vdist=FALSE, maxdist=1000, nmax = 9) 266s [using ordinary kriging] 266s coordinates var1.pred var1.var 266s 1500 (180260, 331300) 5.024413 1.114475 266s > 266s > ## IGNORE_RDIFF_BEGIN 266s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 266s + vdist=TRUE, maxdist=1000, nmax = 9) 266s [using ordinary kriging] 266s coordinates var1.pred var1.var 266s 1500 (180260, 331300) 5.568531 1.112945 266s > ## IGNORE_RDIFF_END 266s > 267s autopkgtest [05:25:49]: test run-unit-test: -----------------------] 267s run-unit-test PASS 267s autopkgtest [05:25:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 267s autopkgtest [05:25:49]: test pkg-r-autopkgtest: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s Solving dependencies... 268s The following NEW packages will be installed: 268s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 268s dctrl-tools g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 268s gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 268s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 268s libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 268s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 268s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 268s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 268s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0 268s libreadline-dev libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev 268s linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 268s r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 268s r-cran-checkmate r-cran-crayon r-cran-data.table r-cran-fs 268s r-cran-future.batchtools r-cran-hms r-cran-pkgconfig r-cran-prettyunits 268s r-cran-progress r-cran-rappdirs r-cran-stringi rpcsvc-proto zlib1g-dev 268s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 268s Need to get 118 MB of archives. 268s After this operation, 413 MB of additional disk space will be used. 268s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 268s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 268s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 268s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 268s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 268s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 268s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 268s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 269s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 269s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 269s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 269s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 269s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 269s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 269s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 269s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 269s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 269s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 269s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 269s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 269s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 270s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 270s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 270s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 270s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 270s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 271s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 271s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 271s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 271s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 271s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 271s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 271s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 271s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 271s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 271s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 271s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 271s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 271s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 271s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 271s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 271s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 271s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 271s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 271s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 271s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 271s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 271s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 271s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 271s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 271s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 272s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 272s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 272s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 272s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 272s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 272s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 272s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 272s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 272s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 272s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 272s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 272s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64url amd64 1.4-2build2 [27.9 kB] 272s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 272s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 272s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 272s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 272s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 272s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 272s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB] 272s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 272s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 272s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 272s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 272s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-batchtools amd64 0.9.17+dfsg-1 [712 kB] 272s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 272s Fetched 118 MB in 4s (28.2 MB/s) 272s Selecting previously unselected package libc-dev-bin. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133987 files and directories currently installed.) 272s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 272s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 272s Selecting previously unselected package linux-libc-dev:amd64. 272s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_amd64.deb ... 272s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 272s Selecting previously unselected package libcrypt-dev:amd64. 272s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 272s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 273s Selecting previously unselected package rpcsvc-proto. 273s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 273s Unpacking rpcsvc-proto (1.4.3-1build1) ... 273s Selecting previously unselected package libc6-dev:amd64. 273s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_amd64.deb ... 273s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 273s Selecting previously unselected package libisl23:amd64. 273s Preparing to unpack .../05-libisl23_0.27-1build1_amd64.deb ... 273s Unpacking libisl23:amd64 (0.27-1build1) ... 273s Selecting previously unselected package libmpc3:amd64. 273s Preparing to unpack .../06-libmpc3_1.3.1-2_amd64.deb ... 273s Unpacking libmpc3:amd64 (1.3.1-2) ... 273s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 273s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 273s Selecting previously unselected package cpp-15. 273s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 273s Selecting previously unselected package cpp-x86-64-linux-gnu. 273s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 273s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 273s Selecting previously unselected package cpp. 273s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 273s Unpacking cpp (4:15.2.0-4ubuntu1) ... 273s Selecting previously unselected package libcc1-0:amd64. 273s Preparing to unpack .../11-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libitm1:amd64. 273s Preparing to unpack .../12-libitm1_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libasan8:amd64. 273s Preparing to unpack .../13-libasan8_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package liblsan0:amd64. 273s Preparing to unpack .../14-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libtsan2:amd64. 273s Preparing to unpack .../15-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libubsan1:amd64. 273s Preparing to unpack .../16-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libhwasan0:amd64. 273s Preparing to unpack .../17-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libquadmath0:amd64. 273s Preparing to unpack .../18-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 273s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 273s Selecting previously unselected package libgcc-15-dev:amd64. 273s Preparing to unpack .../19-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 273s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 273s Preparing to unpack .../20-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 273s Selecting previously unselected package gcc-15. 273s Preparing to unpack .../21-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 273s Selecting previously unselected package gcc-x86-64-linux-gnu. 273s Preparing to unpack .../22-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 273s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 273s Selecting previously unselected package gcc. 273s Preparing to unpack .../23-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 273s Unpacking gcc (4:15.2.0-4ubuntu1) ... 273s Selecting previously unselected package libstdc++-15-dev:amd64. 273s Preparing to unpack .../24-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 273s Selecting previously unselected package g++-15-x86-64-linux-gnu. 273s Preparing to unpack .../25-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 273s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 274s Selecting previously unselected package g++-15. 274s Preparing to unpack .../26-g++-15_15.2.0-12ubuntu1_amd64.deb ... 274s Unpacking g++-15 (15.2.0-12ubuntu1) ... 274s Selecting previously unselected package g++-x86-64-linux-gnu. 274s Preparing to unpack .../27-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 274s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 274s Selecting previously unselected package g++. 274s Preparing to unpack .../28-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 274s Unpacking g++ (4:15.2.0-4ubuntu1) ... 274s Selecting previously unselected package build-essential. 274s Preparing to unpack .../29-build-essential_12.12ubuntu2_amd64.deb ... 274s Unpacking build-essential (12.12ubuntu2) ... 274s Selecting previously unselected package dctrl-tools. 274s Preparing to unpack .../30-dctrl-tools_2.24-3build4_amd64.deb ... 274s Unpacking dctrl-tools (2.24-3build4) ... 274s Selecting previously unselected package libgfortran-15-dev:amd64. 274s Preparing to unpack .../31-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 274s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 274s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 274s Preparing to unpack .../32-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 274s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 274s Selecting previously unselected package gfortran-15. 274s Preparing to unpack .../33-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 274s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 274s Selecting previously unselected package gfortran-x86-64-linux-gnu. 274s Preparing to unpack .../34-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 274s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 274s Selecting previously unselected package gfortran. 274s Preparing to unpack .../35-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 274s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 274s Selecting previously unselected package icu-devtools. 274s Preparing to unpack .../36-icu-devtools_78.2-1ubuntu1_amd64.deb ... 274s Unpacking icu-devtools (78.2-1ubuntu1) ... 274s Selecting previously unselected package libblas-dev:amd64. 274s Preparing to unpack .../37-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 274s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 274s Selecting previously unselected package libbz2-dev:amd64. 274s Preparing to unpack .../38-libbz2-dev_1.0.8-6build2_amd64.deb ... 274s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 274s Selecting previously unselected package libdeflate-dev:amd64. 274s Preparing to unpack .../39-libdeflate-dev_1.23-2build1_amd64.deb ... 274s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 274s Selecting previously unselected package libicu-dev:amd64. 274s Preparing to unpack .../40-libicu-dev_78.2-1ubuntu1_amd64.deb ... 274s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 274s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 274s Preparing to unpack .../41-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ... 274s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 274s Selecting previously unselected package libjpeg8-dev:amd64. 274s Preparing to unpack .../42-libjpeg8-dev_8c-2ubuntu12_amd64.deb ... 274s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ... 274s Selecting previously unselected package libjpeg-dev:amd64. 274s Preparing to unpack .../43-libjpeg-dev_8c-2ubuntu12_amd64.deb ... 274s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ... 274s Selecting previously unselected package liblapack-dev:amd64. 274s Preparing to unpack .../44-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 274s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 274s Selecting previously unselected package libncurses-dev:amd64. 274s Preparing to unpack .../45-libncurses-dev_6.6+20251231-1_amd64.deb ... 274s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 274s Selecting previously unselected package libpcre2-16-0:amd64. 274s Preparing to unpack .../46-libpcre2-16-0_10.46-1_amd64.deb ... 274s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 274s Selecting previously unselected package libpcre2-32-0:amd64. 274s Preparing to unpack .../47-libpcre2-32-0_10.46-1_amd64.deb ... 274s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 274s Selecting previously unselected package libpcre2-posix3:amd64. 274s Preparing to unpack .../48-libpcre2-posix3_10.46-1_amd64.deb ... 274s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 274s Selecting previously unselected package libpcre2-dev:amd64. 274s Preparing to unpack .../49-libpcre2-dev_10.46-1_amd64.deb ... 274s Unpacking libpcre2-dev:amd64 (10.46-1) ... 274s Selecting previously unselected package libpkgconf3:amd64. 274s Preparing to unpack .../50-libpkgconf3_1.8.1-4build1_amd64.deb ... 274s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 274s Selecting previously unselected package zlib1g-dev:amd64. 274s Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 274s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 274s Selecting previously unselected package libpng-dev:amd64. 274s Preparing to unpack .../52-libpng-dev_1.6.54-1_amd64.deb ... 274s Unpacking libpng-dev:amd64 (1.6.54-1) ... 274s Selecting previously unselected package libreadline-dev:amd64. 274s Preparing to unpack .../53-libreadline-dev_8.3-3_amd64.deb ... 274s Unpacking libreadline-dev:amd64 (8.3-3) ... 274s Selecting previously unselected package libzstd-dev:amd64. 274s Preparing to unpack .../54-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 274s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 274s Selecting previously unselected package liblzma-dev:amd64. 274s Preparing to unpack .../55-liblzma-dev_5.8.2-2_amd64.deb ... 274s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 274s Selecting previously unselected package pkgconf-bin. 274s Preparing to unpack .../56-pkgconf-bin_1.8.1-4build1_amd64.deb ... 274s Unpacking pkgconf-bin (1.8.1-4build1) ... 274s Selecting previously unselected package pkgconf:amd64. 274s Preparing to unpack .../57-pkgconf_1.8.1-4build1_amd64.deb ... 274s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 274s Selecting previously unselected package libtirpc-dev:amd64. 274s Preparing to unpack .../58-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 274s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 274s Selecting previously unselected package r-base-dev. 274s Preparing to unpack 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Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 275s Setting up r-cran-fs (1.6.5+dfsg-1) ... 275s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ... 275s Setting up r-cran-backports (1.5.0-2) ... 275s Setting up r-cran-prettyunits (1.2.0-1) ... 275s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ... 275s Setting up r-cran-checkmate (2.3.2-1) ... 275s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 275s Setting up libpcre2-16-0:amd64 (10.46-1) ... 275s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 275s Setting up libpcre2-32-0:amd64 (10.46-1) ... 275s Setting up r-cran-brew (1.0-10-1) ... 275s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... 275s Setting up libpkgconf3:amd64 (1.8.1-4build1) ... 275s Setting up rpcsvc-proto (1.4.3-1build1) ... 275s Setting up r-cran-stringi (1.8.4-1build2) ... 275s Setting up libquadmath0:amd64 (16-20260208-1ubuntu1) ... 275s Setting up r-cran-hms (1.1.4-1) ... 275s Setting up r-cran-crayon (1.5.3-1) ... 275s Setting up libmpc3:amd64 (1.3.1-2) ... 275s Setting up icu-devtools (78.2-1ubuntu1) ... 275s Setting up pkgconf-bin (1.8.1-4build1) ... 275s Setting up liblzma-dev:amd64 (5.8.2-2) ... 275s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ... 275s Setting up libpcre2-posix3:amd64 (10.46-1) ... 275s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ... 275s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ... 275s Setting up libasan8:amd64 (16-20260208-1ubuntu1) ... 275s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ... 275s Setting up libisl23:amd64 (0.27-1build1) ... 275s Setting up libc-dev-bin (2.42-2ubuntu4) ... 275s Setting up libdeflate-dev:amd64 (1.23-2build1) ... 275s Setting up r-cran-progress (1.2.3-1) ... 275s Setting up libcc1-0:amd64 (16-20260208-1ubuntu1) ... 275s Setting up r-cran-rappdirs (0.3.3-1build1) ... 275s Setting up liblsan0:amd64 (16-20260208-1ubuntu1) ... 275s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ... 275s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide 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libbz2-dev:amd64 (1.0.8-6build2) ... 275s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 275s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 275s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 275s Setting up libncurses-dev:amd64 (6.6+20251231-1) ... 275s Setting up libpcre2-dev:amd64 (10.46-1) ... 275s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 275s Setting up libreadline-dev:amd64 (8.3-3) ... 275s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 275s Setting up gcc-15 (15.2.0-12ubuntu1) ... 275s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 275s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 275s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 275s Setting up cpp (4:15.2.0-4ubuntu1) ... 275s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ... 275s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 275s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 275s Setting up libpng-dev:amd64 (1.6.54-1) ... 275s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ... 275s Setting up gcc (4:15.2.0-4ubuntu1) ... 275s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 275s Setting up g++-15 (15.2.0-12ubuntu1) ... 275s Setting up gfortran (4:15.2.0-4ubuntu1) ... 275s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 275s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 275s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 275s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 275s Setting up g++ (4:15.2.0-4ubuntu1) ... 275s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 275s Setting up build-essential (12.12ubuntu2) ... 275s Setting up r-base-dev (4.5.2-1ubuntu2) ... 275s Setting up pkg-r-autopkgtest (20250812) ... 275s Processing triggers for libc-bin (2.42-2ubuntu4) ... 275s Processing triggers for man-db (2.13.1-1build1) ... 275s Processing triggers for install-info (7.2-5) ... 276s autopkgtest [05:25:58]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 276s autopkgtest [05:25:58]: test pkg-r-autopkgtest: [----------------------- 276s Test: Try to load the R library gstat 276s 276s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 276s Copyright (C) 2025 The R Foundation for Statistical Computing 276s Platform: x86_64-pc-linux-gnu 276s 276s R is free software and comes with ABSOLUTELY NO WARRANTY. 276s You are welcome to redistribute it under certain conditions. 276s Type 'license()' or 'licence()' for distribution details. 276s 276s R is a collaborative project with many contributors. 276s Type 'contributors()' for more information and 276s 'citation()' on how to cite R or R packages in publications. 276s 276s Type 'demo()' for some demos, 'help()' for on-line help, or 276s 'help.start()' for an HTML browser interface to help. 276s Type 'q()' to quit R. 276s 276s > library('gstat') 277s > 277s autopkgtest [05:25:59]: test pkg-r-autopkgtest: -----------------------] 277s pkg-r-autopkgtest PASS 277s autopkgtest [05:25:59]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 278s autopkgtest [05:26:00]: @@@@@@@@@@@@@@@@@@@@ summary 278s run-unit-test PASS 278s pkg-r-autopkgtest PASS