0s autopkgtest [03:04:12]: starting date and time: 2026-02-10 03:04:12+0000 0s autopkgtest [03:04:12]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:04:12]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.05x_bbeb/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-25.secgroup --name adt-resolute-amd64-r-cran-gstat-20260210-030412-juju-7f2275-prod-proposed-migration-environment-15-86ac90bc-b1b4-4ce0-b15f-ba8ca3526700 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-r-cran-gstat-20260210-030412-juju-7f2275-prod-proposed-migration-environment-15-86ac90bc-b1b4-4ce0-b15f-ba8ca3526700 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 75s autopkgtest [03:05:27]: testbed dpkg architecture: amd64 75s autopkgtest [03:05:27]: testbed apt version: 3.1.14 75s autopkgtest [03:05:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s autopkgtest [03:05:27]: testbed release detected to be: None 76s autopkgtest [03:05:28]: updating testbed package index (apt update) 76s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB] 77s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB] 77s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB] 77s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB] 77s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B] 77s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 77s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB] 77s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB] 77s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB] 77s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B] 77s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB] 77s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 78s Fetched 5189 kB in 1s (5873 kB/s) 78s Reading package lists... 79s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 79s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 80s The following package was automatically installed and is no longer required: 80s libpython3.13 80s Use 'sudo apt autoremove' to remove it. 80s The following NEW packages will be installed: 80s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 80s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 80s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 80s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 80s The following packages will be upgraded: 80s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 80s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 80s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 80s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 80s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 80s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 80s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 80s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 80s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 80s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 80s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 80s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 80s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 80s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 80s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 80s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 80s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 237 MB of archives. 80s After this operation, 339 MB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 80s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 80s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 80s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 80s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 80s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 80s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 80s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 80s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 80s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 80s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 81s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 81s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 81s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 81s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 81s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 81s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 81s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 81s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 81s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 81s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 82s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 82s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 82s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 82s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 82s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 82s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 82s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 82s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 82s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 82s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 82s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 82s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 82s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 82s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 82s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 82s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 82s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 82s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 82s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 82s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 82s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 82s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 82s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 82s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 82s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 82s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 82s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 82s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 82s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 82s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 82s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 82s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 82s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 82s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 82s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 82s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 82s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 82s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 82s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 82s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 82s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 82s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 82s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 82s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 82s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 82s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 82s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 82s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 82s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 82s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 82s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 82s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 82s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 82s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 83s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 83s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 83s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 83s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 83s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 86s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 86s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 86s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 86s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 86s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 86s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 86s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 86s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 86s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 86s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 86s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 86s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 86s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 86s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 86s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 86s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 86s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 86s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory 87s Fetched 237 MB in 6s (36.7 MB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 87s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 87s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 87s Setting up debianutils (5.23.2build1) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 87s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 87s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 87s Setting up dash (0.5.12-12ubuntu3) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 87s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 87s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 87s Setting up findutils (4.10.0-3build2) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 87s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 87s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 87s Setting up sed (4.9-2build3) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 87s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 87s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 87s Setting up tar (1.35+dfsg-3.1build2) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 88s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 88s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 88s Selecting previously unselected package gcc-16-base:amd64. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 88s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 88s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 88s (Reading database ... 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(7.7.0+6.19.0-3.3) ... 96s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 96s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 96s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 96s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 96s Setting up libsensors-config (1:3.6.2-2build1) ... 96s Setting up less (668-1build1) ... 96s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 96s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 96s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 96s amd64-microcode: microcode will be updated at next boot 96s Setting up man-db (2.13.1-1build1) ... 96s Updating database of manual pages ... 97s man-db.service is a disabled or a static unit not running, not starting it. 97s Setting up libjansson4:amd64 (2.14-2build4) ... 97s Setting up libglib2.0-data (2.87.2-2) ... 97s Setting up pollinate (4.33-4ubuntu5) ... 108s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 108s Setting up libwrap0:amd64 (7.6.q-36build2) ... 108s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 109s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 109s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 109s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 109s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 109s Setting up patch (2.8-2build1) ... 109s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 109s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 109s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 109s Setting up lsof (4.99.4+dfsg-2build2) ... 109s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 109s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 109s Setting up dracut-install (109-11ubuntu1) ... 109s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 109s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 109s Setting up pnp.ids (0.394-1build1) ... 109s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 109s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 109s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 109s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 109s Setting up mawk (1.3.4.20260129-1) ... 109s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 109s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 109s Setting up linux-image-virtual (6.19.0-3.3) ... 109s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 109s Setting up libbsd0:amd64 (0.12.2-2build2) ... 109s Setting up libdrm-common (2.4.131-1) ... 109s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 109s Setting up dbus-bin (1.16.2-2ubuntu3) ... 109s Setting up libonig5:amd64 (6.9.10-1build1) ... 109s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 109s Setting up ethtool (1:6.15-3build1) ... 109s Setting up python3-referencing (0.36.2-1ubuntu2) ... 109s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 109s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 109s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 109s Setting up tcpdump (4.99.5-2ubuntu3) ... 110s Setting up linux-image-generic (6.19.0-3.3) ... 110s Setting up wget (1.25.0-2ubuntu4) ... 110s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 110s Setting up iptables (1.8.11-2ubuntu3) ... 110s Setting up iproute2 (6.18.0-1ubuntu1) ... 110s Setting up linux-headers-generic (6.19.0-3.3) ... 110s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 110s Setting up hwdata (0.394-1build1) ... 110s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 110s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 110s No schema files found: doing nothing. 110s Setting up dbus (1.16.2-2ubuntu3) ... 110s A reboot is required to replace the running dbus-daemon. 110s Please reboot the system when convenient. 110s Setting up shared-mime-info (2.4-5build3) ... 111s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 111s Setting up pciutils (1:3.14.0-1build2) ... 111s Setting up python3-markdown-it (3.0.0-3build1) ... 111s Setting up libdrm2:amd64 (2.4.131-1) ... 111s Setting up libpython3.14:amd64 (3.14.2-1) ... 111s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 111s Setting up linux-tools-common (6.19.0-3.3) ... 111s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 111s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 111s Setting up apt (3.1.15) ... 111s Setting up linux-headers-virtual (6.19.0-3.3) ... 111s Setting up linux-generic (6.19.0-3.3) ... 111s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 111s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 111s Setting up ubuntu-standard (1.564) ... 111s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 111s Setting up linux-virtual (6.19.0-3.3) ... 111s Setting up linux-perf (6.19.0-3.3) ... 111s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 111s Processing triggers for debianutils (5.23.2build1) ... 111s Processing triggers for install-info (7.2-5) ... 111s Processing triggers for initramfs-tools (0.150ubuntu7) ... 111s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 116s Processing triggers for libc-bin (2.42-2ubuntu4) ... 116s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 116s /etc/kernel/postinst.d/initramfs-tools: 116s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 120s /etc/kernel/postinst.d/zz-update-grub: 120s Sourcing file `/etc/default/grub' 120s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 120s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 120s Generating grub configuration file ... 120s Found linux image: /boot/vmlinuz-6.19.0-3-generic 120s Found initrd image: /boot/initrd.img-6.19.0-3-generic 120s Found linux image: /boot/vmlinuz-6.18.0-9-generic 120s Found initrd image: /boot/initrd.img-6.18.0-9-generic 121s Warning: os-prober will not be executed to detect other bootable partitions. 121s Systems on them will not be added to the GRUB boot configuration. 121s Check GRUB_DISABLE_OS_PROBER documentation entry. 121s Adding boot menu entry for UEFI Firmware Settings ... 121s done 121s autopkgtest [03:06:13]: upgrading testbed (apt dist-upgrade and autopurge) 121s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 122s The following package was automatically installed and is no longer required: 122s libpython3.13 122s Use 'sudo apt autoremove' to remove it. 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Solving dependencies... 122s The following packages will be REMOVED: 122s libpython3.13* 122s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 122s After this operation, 7599 kB disk space will be freed. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 122s Removing libpython3.13:amd64 (3.13.11-1) ... 122s Processing triggers for libc-bin (2.42-2ubuntu4) ... 123s autopkgtest [03:06:15]: rebooting testbed after setup commands that affected boot 151s autopkgtest [03:06:43]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 153s autopkgtest [03:06:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (dsc) [2319 B] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (tar) [2283 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (diff) [3816 B] 155s gpgv: Signature made Wed Oct 15 12:45:30 2025 UTC 155s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 155s gpgv: issuer "tille@debian.org" 155s gpgv: Can't check signature: No public key 155s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-2.dsc: no acceptable signature found 155s autopkgtest [03:06:47]: testing package r-cran-gstat version 2.1-3-2 155s autopkgtest [03:06:47]: build not needed 157s autopkgtest [03:06:49]: test run-unit-test: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 158s The following NEW packages will be installed: 158s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 158s gdal-plugins libabsl20260107 libaec0 libaom3 libarmadillo15 libarpack2t64 158s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 158s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-2 158s libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran5 libgif7 158s libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 158s libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 158s libhwy1t64 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjxl0.11 158s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 158s libltdl7 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 libodbc2 158s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 158s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 158s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 158s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 158s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 158s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 158s libxt6t64 libyuv0 mysql-common proj-data r-base-core r-cran-abind 158s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-dbi 158s r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-fansi r-cran-farver 158s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-ggplot2 158s r-cran-globals r-cran-glue r-cran-gstat r-cran-gtable r-cran-intervals 158s r-cran-isoband r-cran-kernsmooth r-cran-labeling r-cran-lattice 158s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 158s r-cran-mapdata r-cran-maps r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme 158s r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 158s r-cran-proxy r-cran-r6 r-cran-raster r-cran-rcolorbrewer r-cran-rcpp 158s r-cran-rlang r-cran-s2 r-cran-scales r-cran-sf r-cran-sftime r-cran-sp 158s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-tibble 158s r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 158s r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils 158s zip 158s 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 176 MB of archives. 158s After this operation, 373 MB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 158s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 159s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 159s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 159s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 159s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB] 159s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 159s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 159s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 159s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 159s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 160s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 160s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 160s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 160s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 160s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 160s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 160s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 160s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 160s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 160s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 160s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 160s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 160s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 160s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 160s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 160s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 160s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 160s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 160s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 160s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 160s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 160s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 160s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 160s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 160s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 160s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 160s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 160s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 160s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 160s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 160s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 160s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 161s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB] 161s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 161s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 161s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 161s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 161s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 161s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 161s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 161s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 161s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 161s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 161s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 161s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 161s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 161s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 161s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 161s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 161s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 161s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 161s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 161s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 161s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 161s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 161s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 161s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 161s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 161s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 161s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 161s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 161s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 161s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4build1 [189 kB] 161s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 161s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 161s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 161s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 161s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 161s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 161s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 161s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 161s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 161s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 161s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 161s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 161s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 161s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 161s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 161s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 161s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 161s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 161s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 161s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 161s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 161s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 161s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 161s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 161s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 162s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 162s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 162s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 162s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 162s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 162s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 162s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 162s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 162s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 162s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 162s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 162s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 162s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dotcall64 amd64 1.2-1 [36.8 kB] 162s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 162s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 162s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 162s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 162s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 162s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spam amd64 2.11-1-1 [2756 kB] 162s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 163s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 163s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fields amd64 16.3.1-1 [3766 kB] 163s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 163s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.19.0-1 [160 kB] 163s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 163s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 163s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 163s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 163s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 163s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 163s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 163s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 163s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 163s Get:135 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB] 163s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 163s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 163s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 163s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 163s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 163s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 163s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 163s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 163s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 163s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 163s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 163s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 163s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 163s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 163s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 163s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 164s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 164s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 164s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 164s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 164s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 164s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 164s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 164s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 164s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 164s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.7-0-1 [4415 kB] 164s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 164s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 165s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 165s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB] 165s Preconfiguring packages ... 165s Fetched 176 MB in 7s (26.2 MB/s) 165s Selecting previously unselected package fonts-dejavu-mono. 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 165s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 165s Unpacking fonts-dejavu-mono (2.37-8build1) ... 165s Selecting previously unselected package fonts-dejavu-core. 165s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 165s Unpacking fonts-dejavu-core (2.37-8build1) ... 165s Selecting previously unselected package fontconfig-config. 165s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 166s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 166s Selecting previously unselected package libfontconfig1:amd64. 166s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 166s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 166s Selecting previously unselected package fontconfig. 166s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 166s Unpacking fontconfig (2.17.1-3ubuntu1) ... 166s Selecting previously unselected package gdal-data. 166s Preparing to unpack .../005-gdal-data_3.12.1+dfsg-1_all.deb ... 166s Unpacking gdal-data (3.12.1+dfsg-1) ... 166s Selecting previously unselected package gdal-plugins:amd64. 166s Preparing to unpack .../006-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 166s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 166s Selecting previously unselected package libabsl20260107:amd64. 166s Preparing to unpack .../007-libabsl20260107_20260107.0-1_amd64.deb ... 166s Unpacking libabsl20260107:amd64 (20260107.0-1) ... 166s Selecting previously unselected package libaec0:amd64. 166s Preparing to unpack .../008-libaec0_1.1.5-1_amd64.deb ... 166s Unpacking libaec0:amd64 (1.1.5-1) ... 166s Selecting previously unselected package libaom3:amd64. 166s Preparing to unpack .../009-libaom3_3.13.1-2_amd64.deb ... 166s Unpacking libaom3:amd64 (3.13.1-2) ... 166s Selecting previously unselected package libblas3:amd64. 166s Preparing to unpack .../010-libblas3_3.12.1-7ubuntu1_amd64.deb ... 166s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 166s Selecting previously unselected package libgfortran5:amd64. 166s Preparing to unpack .../011-libgfortran5_16-20260208-1ubuntu1_amd64.deb ... 166s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ... 166s Selecting previously unselected package liblapack3:amd64. 166s Preparing to unpack .../012-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 166s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 166s Selecting previously unselected package libarpack2t64:amd64. 166s Preparing to unpack .../013-libarpack2t64_3.9.1-6_amd64.deb ... 166s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 166s Selecting previously unselected package libsuperlu7:amd64. 166s Preparing to unpack .../014-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 166s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 166s Selecting previously unselected package libarmadillo15. 166s Preparing to unpack .../015-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 166s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 166s Selecting previously unselected package libdav1d7:amd64. 166s Preparing to unpack .../016-libdav1d7_1.5.3-1_amd64.deb ... 166s Unpacking libdav1d7:amd64 (1.5.3-1) ... 166s Selecting previously unselected package libgav1-2:amd64. 166s Preparing to unpack .../017-libgav1-2_0.20.0-2build1_amd64.deb ... 166s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 166s Selecting previously unselected package libjpeg-turbo8:amd64. 166s Preparing to unpack .../018-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 166s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 166s Selecting previously unselected package libjpeg8:amd64. 166s Preparing to unpack .../019-libjpeg8_8c-2ubuntu12_amd64.deb ... 166s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 166s Selecting previously unselected package libyuv0:amd64. 166s Preparing to unpack .../020-libyuv0_0.0.1922.20260106-1_amd64.deb ... 166s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 166s Selecting previously unselected package libavif16:amd64. 166s Preparing to unpack .../021-libavif16_1.3.0-1ubuntu3_amd64.deb ... 166s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 166s Selecting previously unselected package libsnappy1v5:amd64. 166s Preparing to unpack .../022-libsnappy1v5_1.2.2-2_amd64.deb ... 166s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 166s Selecting previously unselected package libblosc1:amd64. 166s Preparing to unpack .../023-libblosc1_1.21.5+ds-2_amd64.deb ... 166s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 166s Selecting previously unselected package libpixman-1-0:amd64. 166s Preparing to unpack .../024-libpixman-1-0_0.46.4-1_amd64.deb ... 166s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 166s Selecting previously unselected package libxcb-render0:amd64. 166s Preparing to unpack .../025-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 166s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 166s Selecting previously unselected package libxcb-shm0:amd64. 166s Preparing to unpack .../026-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 166s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 166s Selecting previously unselected package libxrender1:amd64. 166s Preparing to unpack .../027-libxrender1_1%3a0.9.12-1_amd64.deb ... 166s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 166s Selecting previously unselected package libcairo2:amd64. 166s Preparing to unpack .../028-libcairo2_1.18.4-3_amd64.deb ... 166s Unpacking libcairo2:amd64 (1.18.4-3) ... 166s Selecting previously unselected package libcfitsio10t64:amd64. 166s Preparing to unpack .../029-libcfitsio10t64_4.6.3-1_amd64.deb ... 166s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 166s Selecting previously unselected package libdatrie1:amd64. 166s Preparing to unpack .../030-libdatrie1_0.2.14-1_amd64.deb ... 166s Unpacking libdatrie1:amd64 (0.2.14-1) ... 166s Selecting previously unselected package libde265-0:amd64. 166s Preparing to unpack .../031-libde265-0_1.0.16-1build1_amd64.deb ... 166s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 166s Selecting previously unselected package libdeflate0:amd64. 166s Preparing to unpack .../032-libdeflate0_1.23-2build1_amd64.deb ... 166s Unpacking libdeflate0:amd64 (1.23-2build1) ... 166s Selecting previously unselected package libfyba0t64:amd64. 166s Preparing to unpack .../033-libfyba0t64_4.1.1-11build2_amd64.deb ... 166s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 166s Selecting previously unselected package libminizip1t64:amd64. 166s Preparing to unpack .../034-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 166s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 166s Selecting previously unselected package libfreexl1:amd64. 166s Preparing to unpack .../035-libfreexl1_2.0.0-1build3_amd64.deb ... 166s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 166s Selecting previously unselected package libgeos3.14.1:amd64. 166s Preparing to unpack .../036-libgeos3.14.1_3.14.1-2_amd64.deb ... 166s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 166s Selecting previously unselected package libgeos-c1t64:amd64. 166s Preparing to unpack .../037-libgeos-c1t64_3.14.1-2_amd64.deb ... 166s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 166s Selecting previously unselected package proj-data. 166s Preparing to unpack .../038-proj-data_9.7.1-1_all.deb ... 166s Unpacking proj-data (9.7.1-1) ... 166s Selecting previously unselected package libjbig0:amd64. 166s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 166s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 166s Selecting previously unselected package liblerc4:amd64. 166s Preparing to unpack .../040-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 166s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 166s Selecting previously unselected package libsharpyuv0:amd64. 166s Preparing to unpack .../041-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 166s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 166s Selecting previously unselected package libwebp7:amd64. 166s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_amd64.deb ... 166s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 166s Selecting previously unselected package libtiff6:amd64. 166s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 166s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 166s Selecting previously unselected package libproj25:amd64. 166s Preparing to unpack .../044-libproj25_9.7.1-1_amd64.deb ... 166s Unpacking libproj25:amd64 (9.7.1-1) ... 166s Selecting previously unselected package libgeotiff5:amd64. 166s Preparing to unpack .../045-libgeotiff5_1.7.4-1build1_amd64.deb ... 166s Unpacking libgeotiff5:amd64 (1.7.4-1build1) ... 166s Selecting previously unselected package libgif7:amd64. 166s Preparing to unpack .../046-libgif7_5.2.2-1ubuntu3_amd64.deb ... 166s Unpacking libgif7:amd64 (5.2.2-1ubuntu3) ... 166s Selecting previously unselected package libsz2:amd64. 166s Preparing to unpack .../047-libsz2_1.1.5-1_amd64.deb ... 166s Unpacking libsz2:amd64 (1.1.5-1) ... 166s Selecting previously unselected package libhdf4-0:amd64. 166s Preparing to unpack .../048-libhdf4-0_4.3.1-2_amd64.deb ... 166s Unpacking libhdf4-0:amd64 (4.3.1-2) ... 166s Selecting previously unselected package libhdf5-310:amd64. 166s Preparing to unpack .../049-libhdf5-310_1.14.6+repack-2_amd64.deb ... 166s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 166s Selecting previously unselected package libheif-plugin-aomdec:amd64. 166s Preparing to unpack .../050-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 166s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 166s Selecting previously unselected package libheif-plugin-libde265:amd64. 166s Preparing to unpack .../051-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 166s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 166s Selecting previously unselected package libheif1:amd64. 166s Preparing to unpack .../052-libheif1_1.21.2-1_amd64.deb ... 166s Unpacking libheif1:amd64 (1.21.2-1) ... 166s Selecting previously unselected package libhwy1t64:amd64. 166s Preparing to unpack .../053-libhwy1t64_1.3.0-2_amd64.deb ... 166s Unpacking libhwy1t64:amd64 (1.3.0-2) ... 166s Selecting previously unselected package liblcms2-2:amd64. 166s Preparing to unpack .../054-liblcms2-2_2.17-1_amd64.deb ... 166s Unpacking liblcms2-2:amd64 (2.17-1) ... 167s Selecting previously unselected package libjxl0.11:amd64. 167s Preparing to unpack .../055-libjxl0.11_0.11.1-6ubuntu1_amd64.deb ... 167s Unpacking libjxl0.11:amd64 (0.11.1-6ubuntu1) ... 167s Selecting previously unselected package liburiparser1:amd64. 167s Preparing to unpack .../056-liburiparser1_0.9.8+dfsg-2_amd64.deb ... 167s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2) ... 167s Selecting previously unselected package libkmlbase1t64:amd64. 167s Preparing to unpack .../057-libkmlbase1t64_1.3.0-13_amd64.deb ... 167s Unpacking libkmlbase1t64:amd64 (1.3.0-13) ... 167s Selecting previously unselected package libkmldom1t64:amd64. 167s Preparing to unpack .../058-libkmldom1t64_1.3.0-13_amd64.deb ... 167s Unpacking libkmldom1t64:amd64 (1.3.0-13) ... 167s Selecting previously unselected package libkmlengine1t64:amd64. 167s Preparing to unpack .../059-libkmlengine1t64_1.3.0-13_amd64.deb ... 167s Unpacking libkmlengine1t64:amd64 (1.3.0-13) ... 167s Selecting previously unselected package libgomp1:amd64. 167s Preparing to unpack .../060-libgomp1_16-20260208-1ubuntu1_amd64.deb ... 167s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ... 167s Selecting previously unselected package libmuparser2v5:amd64. 167s Preparing to unpack .../061-libmuparser2v5_2.3.4-2_amd64.deb ... 167s Unpacking libmuparser2v5:amd64 (2.3.4-2) ... 167s Selecting previously unselected package mysql-common. 167s Preparing to unpack .../062-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 167s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 167s Selecting previously unselected package libmysqlclient24:amd64. 167s Preparing to unpack .../063-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 167s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 167s Selecting previously unselected package libhdf5-hl-310:amd64. 167s Preparing to unpack .../064-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 167s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 167s Selecting previously unselected package libnetcdf22:amd64. 167s Preparing to unpack .../065-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 167s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 167s Selecting previously unselected package libltdl7:amd64. 167s Preparing to unpack .../066-libltdl7_2.5.4-9_amd64.deb ... 167s Unpacking libltdl7:amd64 (2.5.4-9) ... 167s Selecting previously unselected package libodbc2:amd64. 167s Preparing to unpack .../067-libodbc2_2.3.14-1_amd64.deb ... 167s Unpacking libodbc2:amd64 (2.3.14-1) ... 167s Selecting previously unselected package unixodbc-common. 167s Preparing to unpack .../068-unixodbc-common_2.3.14-1_all.deb ... 167s Unpacking unixodbc-common (2.3.14-1) ... 167s Selecting previously unselected package libodbcinst2:amd64. 167s Preparing to unpack .../069-libodbcinst2_2.3.14-1_amd64.deb ... 167s Unpacking libodbcinst2:amd64 (2.3.14-1) ... 167s Selecting previously unselected package libopenjp2-7:amd64. 167s Preparing to unpack .../070-libopenjp2-7_2.5.4-1_amd64.deb ... 167s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 167s Selecting previously unselected package libgpgmepp6t64:amd64. 167s Preparing to unpack .../071-libgpgmepp6t64_1.24.2-3ubuntu2_amd64.deb ... 167s Unpacking libgpgmepp6t64:amd64 (1.24.2-3ubuntu2) ... 167s Selecting previously unselected package libpoppler147:amd64. 167s Preparing to unpack .../072-libpoppler147_25.03.0-11.1_amd64.deb ... 167s Unpacking libpoppler147:amd64 (25.03.0-11.1) ... 167s Selecting previously unselected package libpq5:amd64. 167s Preparing to unpack .../073-libpq5_18.1-2_amd64.deb ... 167s Unpacking libpq5:amd64 (18.1-2) ... 167s Selecting previously unselected package libqhull-r8.0:amd64. 167s Preparing to unpack .../074-libqhull-r8.0_2020.2-8_amd64.deb ... 167s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 167s Selecting previously unselected package librttopo1:amd64. 167s Preparing to unpack .../075-librttopo1_1.1.0-4build1_amd64.deb ... 167s Unpacking librttopo1:amd64 (1.1.0-4build1) ... 167s Selecting previously unselected package libspatialite8t64:amd64. 167s Preparing to unpack .../076-libspatialite8t64_5.1.0-3ubuntu1_amd64.deb ... 167s Unpacking libspatialite8t64:amd64 (5.1.0-3ubuntu1) ... 167s Selecting previously unselected package libxerces-c3.2t64:amd64. 167s Preparing to unpack .../077-libxerces-c3.2t64_3.2.4+debian-1.3build2_amd64.deb ... 167s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build2) ... 167s Selecting previously unselected package libgdal38:amd64. 167s Preparing to unpack .../078-libgdal38_3.12.1+dfsg-1_amd64.deb ... 167s Unpacking libgdal38:amd64 (3.12.1+dfsg-1) ... 167s Selecting previously unselected package libgraphite2-3:amd64. 167s Preparing to unpack .../079-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 167s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 167s Selecting previously unselected package libharfbuzz0b:amd64. 167s Preparing to unpack .../080-libharfbuzz0b_12.3.2-1_amd64.deb ... 167s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 167s Selecting previously unselected package x11-common. 167s Preparing to unpack .../081-x11-common_1%3a7.7+24ubuntu1_all.deb ... 167s Unpacking x11-common (1:7.7+24ubuntu1) ... 167s Selecting previously unselected package libice6:amd64. 167s Preparing to unpack .../082-libice6_2%3a1.1.1-1build1_amd64.deb ... 167s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 167s Selecting previously unselected package libthai-data. 167s Preparing to unpack .../083-libthai-data_0.1.30-1_all.deb ... 167s Unpacking libthai-data (0.1.30-1) ... 167s Selecting previously unselected package libthai0:amd64. 167s Preparing to unpack .../084-libthai0_0.1.30-1_amd64.deb ... 167s Unpacking libthai0:amd64 (0.1.30-1) ... 167s Selecting previously unselected package libpango-1.0-0:amd64. 167s Preparing to unpack .../085-libpango-1.0-0_1.57.0-1_amd64.deb ... 167s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ... 167s Selecting previously unselected package libpangoft2-1.0-0:amd64. 167s Preparing to unpack .../086-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 167s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 167s Selecting previously unselected package libpangocairo-1.0-0:amd64. 167s Preparing to unpack .../087-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 167s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 167s Selecting previously unselected package libpaper2:amd64. 167s Preparing to unpack .../088-libpaper2_2.2.5-0.3build1_amd64.deb ... 167s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 167s Selecting previously unselected package libpaper-utils. 167s Preparing to unpack .../089-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 167s Unpacking libpaper-utils (2.2.5-0.3build1) ... 167s Selecting previously unselected package libsm6:amd64. 167s Preparing to unpack .../090-libsm6_2%3a1.2.6-1build1_amd64.deb ... 167s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 167s Selecting previously unselected package libtcl8.6:amd64. 167s Preparing to unpack .../091-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 167s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 167s Selecting previously unselected package libxft2:amd64. 167s Preparing to unpack .../092-libxft2_2.3.6-1build2_amd64.deb ... 167s Unpacking libxft2:amd64 (2.3.6-1build2) ... 167s Selecting previously unselected package libxss1:amd64. 167s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build4_amd64.deb ... 167s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 167s Selecting previously unselected package libtk8.6:amd64. 167s Preparing to unpack .../094-libtk8.6_8.6.17-1_amd64.deb ... 167s Unpacking libtk8.6:amd64 (8.6.17-1) ... 167s Selecting previously unselected package libudunits2-data. 167s Preparing to unpack .../095-libudunits2-data_2.2.28-8_all.deb ... 167s Unpacking libudunits2-data (2.2.28-8) ... 167s Selecting previously unselected package libudunits2-0:amd64. 167s Preparing to unpack .../096-libudunits2-0_2.2.28-8_amd64.deb ... 167s Unpacking libudunits2-0:amd64 (2.2.28-8) ... 167s Selecting previously unselected package libxt6t64:amd64. 167s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 167s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 167s Selecting previously unselected package zip. 167s Preparing to unpack .../098-zip_3.0-15ubuntu3_amd64.deb ... 167s Unpacking zip (3.0-15ubuntu3) ... 167s Selecting previously unselected package unzip. 167s Preparing to unpack .../099-unzip_6.0-29ubuntu1_amd64.deb ... 167s Unpacking unzip (6.0-29ubuntu1) ... 167s Selecting previously unselected package xdg-utils. 167s Preparing to unpack .../100-xdg-utils_1.2.1-2ubuntu2_all.deb ... 167s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 167s Selecting previously unselected package r-base-core. 167s Preparing to unpack .../101-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 167s Unpacking r-base-core (4.5.2-1ubuntu2) ... 168s Selecting previously unselected package r-cran-abind. 168s Preparing to unpack .../102-r-cran-abind_1.4-8-1build1_all.deb ... 168s Unpacking r-cran-abind (1.4-8-1build1) ... 168s Selecting previously unselected package r-cran-mass. 168s Preparing to unpack .../103-r-cran-mass_7.3-65-1_amd64.deb ... 168s Unpacking r-cran-mass (7.3-65-1) ... 168s Selecting previously unselected package r-cran-class. 168s Preparing to unpack .../104-r-cran-class_7.3-23-1_amd64.deb ... 168s Unpacking r-cran-class (7.3-23-1) ... 168s Selecting previously unselected package r-cran-proxy. 168s Preparing to unpack .../105-r-cran-proxy_0.4-27-1_amd64.deb ... 168s Unpacking r-cran-proxy (0.4-27-1) ... 168s Selecting previously unselected package r-cran-e1071. 168s Preparing to unpack .../106-r-cran-e1071_1.7-17-1_amd64.deb ... 168s Unpacking r-cran-e1071 (1.7-17-1) ... 168s Selecting previously unselected package r-cran-kernsmooth. 168s Preparing to unpack .../107-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 168s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 168s Selecting previously unselected package r-cran-classint. 168s Preparing to unpack .../108-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 168s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 168s Selecting previously unselected package r-cran-cli. 168s Preparing to unpack .../109-r-cran-cli_3.6.4-1_amd64.deb ... 168s Unpacking r-cran-cli (3.6.4-1) ... 168s Selecting previously unselected package r-cran-codetools. 168s Preparing to unpack .../110-r-cran-codetools_0.2-20-1build1_all.deb ... 168s Unpacking r-cran-codetools (0.2-20-1build1) ... 168s Selecting previously unselected package r-cran-dbi. 168s Preparing to unpack .../111-r-cran-dbi_1.2.3-1build1_all.deb ... 168s Unpacking r-cran-dbi (1.2.3-1build1) ... 168s Selecting previously unselected package r-cran-digest. 168s Preparing to unpack .../112-r-cran-digest_0.6.39-1_amd64.deb ... 168s Unpacking r-cran-digest (0.6.39-1) ... 168s Selecting previously unselected package r-cran-dotcall64. 168s Preparing to unpack .../113-r-cran-dotcall64_1.2-1_amd64.deb ... 168s Unpacking r-cran-dotcall64 (1.2-1) ... 168s Selecting previously unselected package r-cran-fansi. 168s Preparing to unpack .../114-r-cran-fansi_1.0.6-2_amd64.deb ... 168s Unpacking r-cran-fansi (1.0.6-2) ... 168s Selecting previously unselected package r-cran-farver. 168s Preparing to unpack .../115-r-cran-farver_2.1.2-1_amd64.deb ... 168s Unpacking r-cran-farver (2.1.2-1) ... 168s Selecting previously unselected package r-cran-littler. 168s Preparing to unpack .../116-r-cran-littler_0.3.22-1_amd64.deb ... 168s Unpacking r-cran-littler (0.3.22-1) ... 168s Selecting previously unselected package r-cran-pkgkitten. 168s Preparing to unpack .../117-r-cran-pkgkitten_0.2.4-1_all.deb ... 168s Unpacking r-cran-pkgkitten (0.2.4-1) ... 168s Selecting previously unselected package r-cran-rcpp. 168s Preparing to unpack .../118-r-cran-rcpp_1.1.0-1_amd64.deb ... 168s Unpacking r-cran-rcpp (1.1.0-1) ... 168s Selecting previously unselected package r-cran-spam. 168s Preparing to unpack .../119-r-cran-spam_2.11-1-1_amd64.deb ... 168s Unpacking r-cran-spam (2.11-1-1) ... 168s Selecting previously unselected package r-cran-viridislite. 168s Preparing to unpack .../120-r-cran-viridislite_0.4.3-1_all.deb ... 168s Unpacking r-cran-viridislite (0.4.3-1) ... 168s Selecting previously unselected package r-cran-maps. 168s Preparing to unpack .../121-r-cran-maps_3.4.2.1-1_amd64.deb ... 168s Unpacking r-cran-maps (3.4.2.1-1) ... 168s Selecting previously unselected package r-cran-fields. 168s Preparing to unpack .../122-r-cran-fields_16.3.1-1_amd64.deb ... 168s Unpacking r-cran-fields (16.3.1-1) ... 168s Selecting previously unselected package r-cran-fnn. 168s Preparing to unpack .../123-r-cran-fnn_1.1.4.1-1_amd64.deb ... 168s Unpacking r-cran-fnn (1.1.4.1-1) ... 168s Selecting previously unselected package r-cran-globals. 168s Preparing to unpack .../124-r-cran-globals_0.19.0-1_all.deb ... 168s Unpacking r-cran-globals (0.19.0-1) ... 168s Selecting previously unselected package r-cran-listenv. 168s Preparing to unpack .../125-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 168s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-parallelly. 168s Preparing to unpack .../126-r-cran-parallelly_1.42.0-1_amd64.deb ... 168s Unpacking r-cran-parallelly (1.42.0-1) ... 168s Selecting previously unselected package r-cran-future. 168s Preparing to unpack .../127-r-cran-future_1.34.0+dfsg-1_all.deb ... 168s Unpacking r-cran-future (1.34.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-future.apply. 168s Preparing to unpack .../128-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 168s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 168s Selecting previously unselected package r-cran-glue. 168s Preparing to unpack .../129-r-cran-glue_1.8.0-1_amd64.deb ... 168s Unpacking r-cran-glue (1.8.0-1) ... 168s Selecting previously unselected package r-cran-rlang. 168s Preparing to unpack .../130-r-cran-rlang_1.1.5-3_amd64.deb ... 168s Unpacking r-cran-rlang (1.1.5-3) ... 168s Selecting previously unselected package r-cran-lifecycle. 168s Preparing 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man-db (2.13.1-1build1) ... 173s autopkgtest [03:07:05]: test run-unit-test: [----------------------- 173s BEGIN TEST allier.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 174s > library(sp) 174s > library(gstat) 174s > 174s > # some data 174s > x <- c(215, 330, 410, 470, 545) 174s > y <- c(230, 310, 330, 340, 365) 174s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 174s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 174s > Allier <- data.frame(x, y, fc, por) 174s > coordinates(Allier) = ~x+y 174s > 174s > # gstat object for co-kriging using linear model of co-regionalization 174s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 174s + model=vgm(0.00247, "Sph", 480, 0.00166)) 174s > g <- gstat(g, id="por", formula=por~1, data=Allier, 174s + model=vgm(0.00239, "Sph", 480, 0.00118)) 174s > g <- gstat(g, id=c("fc", "por"), 174s + model=vgm(0.00151, "Sph", 480, -0.00124)) 174s > 174s > # predict at single point 174s > g$set = list(choleski = 0) # LDL' 174s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 174s Linear Model of Coregionalization found. Good. 174s [using ordinary cokriging] 174s we're at location X: 450 Y: 350 Z: 0 174s zero block size 174s we're at point X: 450 Y: 350 Z: 0 174s 174s # X: 174s #Matrix: 10 by 2 174s rbind( 174s c( 1.000000, 0.000000), # row 1 174s c( 1.000000, 0.000000), # row 2 174s c( 1.000000, 0.000000), # row 3 174s c( 1.000000, 0.000000), # row 4 174s c( 1.000000, 0.000000), # row 5 174s c( 0.000000, 1.000000), # row 6 174s c( 0.000000, 1.000000), # row 7 174s c( 0.000000, 1.000000), # row 8 174s c( 0.000000, 1.000000), # row 9 174s c( 0.000000, 1.000000) # row 10 174s ) 174s [using generalized covariances: max_val - semivariance()] 174s # Covariances (x_i, x_j) matrix C (upper triangle): 174s #Matrix: 10 by 10 174s rbind( 174s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 174s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 174s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 174s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 174s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 174s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 174s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 174s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 174s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 174s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 174s ) 174s 174s # glm->C, LDL' decomposed:: 174s #Matrix: 10 by 10 174s rbind( 174s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 174s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 174s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 174s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 174s ) 174s 174s # X'C-1 X: 174s #Matrix: 2 by 2 174s rbind( 174s c(665.433994, -232.313340), # row 1 174s c(-232.313340, 729.440848) # row 2 174s ) 174s 174s # beta: 174s #Vector: dim: 2 174s c( 0.244216, 0.440933) 174s # Cov(beta), (X'C-1 X)-1: 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.001691, 0.000538), # row 1 174s c( 0.000538, 0.001542) # row 2 174s ) 174s 174s # Corr(beta): 174s #Matrix: 2 by 2 174s rbind( 174s c( 1.000000, 0.333447), # row 1 174s c( 0.333447, 1.000000) # row 2 174s ) 174s 174s # X0 (X values at prediction location x0): 174s #Matrix: 2 by 2 174s rbind( 174s c( 1.000000, 0.000000), # row 1 174s c( 0.000000, 1.000000) # row 2 174s ) 174s 174s # BLUE(mu), E(y(x0)) = X0'beta: 174s #Vector: dim: 2 174s c( 0.244216, 0.440933) 174s # Covariances (x_i, x_0), C0: 174s #Matrix: 10 by 2 174s rbind( 174s c( 0.000638, 0.000390), # row 1 174s c( 0.001516, 0.000927), # row 2 174s c( 0.002126, 0.001300), # row 3 174s c( 0.002298, 0.001405), # row 4 174s c( 0.001738, 0.001062), # row 5 174s c( 0.000390, 0.000618), # row 6 174s c( 0.000927, 0.001467), # row 7 174s c( 0.001300, 0.002057), # row 8 174s c( 0.001405, 0.002223), # row 9 174s c( 0.001062, 0.001681) # row 10 174s ) 174s 174s # C-1 C0: 174s #Matrix: 10 by 2 174s rbind( 174s c( 0.008927, -0.017995), # row 1 174s c( 0.061935, -0.028550), # row 2 174s c( 0.225195, 0.078344), # row 3 174s c( 0.356735, 0.190177), # row 4 174s c( 0.094128, -0.023136), # row 5 174s c(-0.021119, 0.004935), # row 6 174s c(-0.033508, 0.055601), # row 7 174s c( 0.091947, 0.242576), # row 8 174s c( 0.223200, 0.398927), # row 9 174s c(-0.027153, 0.088995) # row 10 174s ) 174s 174s # [a] Cov_ij(B,B) or Cov_ij(0,0): 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.004130, 0.000270), # row 1 174s c( 0.000270, 0.003570) # row 2 174s ) 174s 174s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.000129, -0.000107), # row 1 174s c(-0.000107, 0.000089) # row 2 174s ) 174s 174s # [b] c0'C-1 c0: 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.001926, 0.001532), # row 1 174s c( 0.001532, 0.001931) # row 2 174s ) 174s 174s # Best Linear Unbiased Predictor: 174s #Vector: dim: 2 174s c( 0.253090, 0.441258) 174s # MSPE ([a]-[b]+[c]): 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.002332, -0.001369), # row 1 174s c(-0.001369, 0.001729) # row 2 174s ) 174s 174s # kriging weights: 174s #Matrix: 10 by 2 174s rbind( 174s c( 0.071177, -0.064988), # row 1 174s c( 0.108451, -0.066123), # row 2 174s c( 0.268160, 0.043141), # row 3 174s c( 0.401959, 0.153312), # row 4 174s c( 0.150253, -0.065342), # row 5 174s c(-0.076273, 0.056759), # row 6 174s c(-0.077605, 0.093781), # row 7 174s c( 0.050632, 0.277731), # row 8 174s c( 0.179933, 0.435972), # row 9 174s c(-0.076688, 0.135756) # row 10 174s ) 174s 174s 174s > g$set = list(choleski = 1) # Choleski 174s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 174s Linear Model of Coregionalization found. Good. 174s [using ordinary cokriging] 174s we're at location X: 450 Y: 350 Z: 0 174s zero block size 174s we're at point X: 450 Y: 350 Z: 0 174s 174s # X: 174s #Matrix: 10 by 2 174s rbind( 174s c( 1.000000, 0.000000), # row 1 174s c( 1.000000, 0.000000), # row 2 174s c( 1.000000, 0.000000), # row 3 174s c( 1.000000, 0.000000), # row 4 174s c( 1.000000, 0.000000), # row 5 174s c( 0.000000, 1.000000), # row 6 174s c( 0.000000, 1.000000), # row 7 174s c( 0.000000, 1.000000), # row 8 174s c( 0.000000, 1.000000), # row 9 174s c( 0.000000, 1.000000) # row 10 174s ) 174s [using generalized covariances: max_val - semivariance()] 174s # Covariances (x_i, x_j) matrix C (upper triangle): 174s #Matrix: 10 by 10 174s rbind( 174s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 174s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 174s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 174s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 174s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 174s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 174s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 174s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 174s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 174s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 174s ) 174s 174s # glm->C, Choleski decomposed:: 174s #Matrix: 10 by 10 174s rbind( 174s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 174s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 174s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 174s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 174s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 174s ) 174s 174s # X'C-1 X: 174s #Matrix: 2 by 2 174s rbind( 174s c(665.433994, -232.313340), # row 1 174s c(-232.313340, 729.440848) # row 2 174s ) 174s 174s # beta: 174s #Vector: dim: 2 174s c( 0.244216, 0.440933) 174s # Cov(beta), (X'C-1 X)-1: 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.001691, 0.000538), # row 1 174s c( 0.000538, 0.001542) # row 2 174s ) 174s 174s # Corr(beta): 174s #Matrix: 2 by 2 174s rbind( 174s c( 1.000000, 0.333447), # row 1 174s c( 0.333447, 1.000000) # row 2 174s ) 174s 174s # X0 (X values at prediction location x0): 174s #Matrix: 2 by 2 174s rbind( 174s c( 1.000000, 0.000000), # row 1 174s c( 0.000000, 1.000000) # row 2 174s ) 174s 174s # BLUE(mu), E(y(x0)) = X0'beta: 174s #Vector: dim: 2 174s c( 0.244216, 0.440933) 174s # Covariances (x_i, x_0), C0: 174s #Matrix: 10 by 2 174s rbind( 174s c( 0.000638, 0.000390), # row 1 174s c( 0.001516, 0.000927), # row 2 174s c( 0.002126, 0.001300), # row 3 174s c( 0.002298, 0.001405), # row 4 174s c( 0.001738, 0.001062), # row 5 174s c( 0.000390, 0.000618), # row 6 174s c( 0.000927, 0.001467), # row 7 174s c( 0.001300, 0.002057), # row 8 174s c( 0.001405, 0.002223), # row 9 174s c( 0.001062, 0.001681) # row 10 174s ) 174s 174s # C-1 C0: 174s #Matrix: 10 by 2 174s rbind( 174s c( 0.008927, -0.017995), # row 1 174s c( 0.061935, -0.028550), # row 2 174s c( 0.225195, 0.078344), # row 3 174s c( 0.356735, 0.190177), # row 4 174s c( 0.094128, -0.023136), # row 5 174s c(-0.021119, 0.004935), # row 6 174s c(-0.033508, 0.055601), # row 7 174s c( 0.091947, 0.242576), # row 8 174s c( 0.223200, 0.398927), # row 9 174s c(-0.027153, 0.088995) # row 10 174s ) 174s 174s # [a] Cov_ij(B,B) or Cov_ij(0,0): 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.004130, 0.000270), # row 1 174s c( 0.000270, 0.003570) # row 2 174s ) 174s 174s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.000129, -0.000107), # row 1 174s c(-0.000107, 0.000089) # row 2 174s ) 174s 174s # [b] c0'C-1 c0: 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.001926, 0.001532), # row 1 174s c( 0.001532, 0.001931) # row 2 174s ) 174s 174s # Best Linear Unbiased Predictor: 174s #Vector: dim: 2 174s c( 0.253090, 0.441258) 174s # MSPE ([a]-[b]+[c]): 174s #Matrix: 2 by 2 174s rbind( 174s c( 0.002332, -0.001369), # row 1 174s c(-0.001369, 0.001729) # row 2 174s ) 174s 174s # kriging weights: 174s #Matrix: 10 by 2 174s rbind( 174s c( 0.071177, -0.064988), # row 1 174s c( 0.108451, -0.066123), # row 2 174s c( 0.268160, 0.043141), # row 3 174s c( 0.401959, 0.153312), # row 4 174s c( 0.150253, -0.065342), # row 5 174s c(-0.076273, 0.056759), # row 6 174s c(-0.077605, 0.093781), # row 7 174s c( 0.050632, 0.277731), # row 8 174s c( 0.179933, 0.435972), # row 9 174s c(-0.076688, 0.135756) # row 10 174s ) 174s 174s 174s > all.equal(A,B) 174s [1] TRUE 174s > 174s > # TRUE 174s > 174s BEGIN TEST blockkr.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > library(sp) 174s > data(meuse) 174s > coordinates(meuse) = c("x", "y") 174s > new.locs <- SpatialPoints(data.frame( 174s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 174s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 174s > library(gstat) 174s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 174s + block = c(40,40), nmax = 40) 174s [using ordinary kriging] 174s coordinates var1.pred var1.var 174s 1 (181170, 333250) 268.7576 19447.67 174s 2 (180310, 332189) 663.4915 16991.33 174s 3 (180205, 331707) 251.4606 21579.71 174s 4 (178673, 330066) 532.5776 73807.91 174s 5 (178770, 330675) 664.4039 23589.17 174s 6 (178270, 331075) 565.5436 155113.23 174s > 174s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 174s > 174s > disc = c(-15,-5,5,15) 174s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 174s > block.irreg 174s x y 174s 1 -15 -15 174s 2 -5 -15 174s 3 5 -15 174s 4 15 -15 174s 5 -15 -5 174s 6 -5 -5 174s 7 5 -5 174s 8 15 -5 174s 9 -15 5 174s 10 -5 5 174s 11 5 5 174s 12 15 5 174s 13 -15 15 174s 14 -5 15 174s 15 5 15 174s 16 15 15 174s > 174s > # first disable default Gaussian quadrature used for block integration, by 174s > # setting nblockdiscr explicitly: 174s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 174s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 174s [using ordinary kriging] 174s coordinates var1.pred var1.var 174s 1 (181170, 333250) 268.7324 19568.76 174s > # now pass the same block discretization as block.irreg: 174s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 174s + block = block.irreg, nmax = 40) 174s [using ordinary kriging] 174s coordinates var1.pred var1.var 174s 1 (181170, 333250) 268.7324 19568.76 174s > # check weights argument: 174s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 174s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 174s + block = block.irreg, nmax = 40) 174s [using ordinary kriging] 174s coordinates var1.pred var1.var 174s 1 (181170, 333250) 268.7324 19568.76 174s > 174s BEGIN TEST covtable.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 175s > library(gstat) 175s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 175s > d$z=1:4 175s > vv=vgm(model = "Tab", covtable = 175s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 175s > vv 175s model psill maxdist 175s 1 Tab NA 1 175s covariance table: 175s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 175s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 175s [using ordinary kriging] 175s x y var1.pred var1.var 175s 1 0 0 2.5 1.017767 175s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 175s [using ordinary kriging] 175s x y var1.pred var1.var 175s 1 0 0 2.5 1.017863 175s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 175s [using ordinary kriging] 175s x y var1.pred var1.var 175s 1 0 0 1.5 1.267767 175s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 175s [using ordinary kriging] 175s x y var1.pred var1.var 175s 1 0 0 1.5 1.267863 175s > 175s BEGIN TEST cv.R 175s 175s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > # try bivariate cokriging; cross validate first variable 175s > library(sp) 175s > data(meuse) 175s > library(gstat) 175s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 175s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 175s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 175s > v=variogram(g) 175s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 175s > g=fit.lmc(v, g) 175s > g 175s data: 175s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 175s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 175s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 175s variograms: 175s model psill range 175s log-zinc Sph 0.7132435 1000 175s log-lead Sph 0.6133020 1000 175s log-copper Sph 0.3634211 1000 175s log-zinc.log-lead Sph 0.6367012 1000 175s log-zinc.log-copper Sph 0.4570044 1000 175s log-lead.log-copper Sph 0.3934910 1000 175s ~x + y 175s > set.seed(13131) 175s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Warning message: 175s In checkNames(value) : 175s attempt to set invalid names: this may lead to problems later on. See ?make.names 175s log.zinc.pred log.zinc.var observed residual 175s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 175s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 175s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 175s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 175s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 175s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 175s zscore fold x y 175s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 175s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 175s Median :-0.10755 Median :3.000 Median :179991 Median :331633 175s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 175s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 175s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 175s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 175s Intrinsic Correlation found. Good. 175s [using ordinary cokriging] 176s Intrinsic Correlation found. Good. 176s [using ordinary cokriging] 176s Warning message: 176s In checkNames(value) : 176s attempt to set invalid names: this may lead to problems later on. See ?make.names 176s log.zinc.pred log.zinc.var observed residual 176s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190976 176s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 176s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 176s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 176s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 176s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 176s zscore fold x y 176s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 176s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 176s Median : 0.007242 Median :3.000 Median :179991 Median :331633 176s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 176s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 176s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 176s > 176s BEGIN TEST cv3d.R 176s 176s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 176s > options(digits = 4) 176s > set.seed(1131) 176s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 176s > library(gstat) 176s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 176s > summary(xx) 176s var1.pred var1.var observed residual 176s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 176s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 176s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 176s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 176s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.501 3rd Qu.: 0.8508 176s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 176s zscore fold x y 176s Min. :-5.1678 Min. : 1.0 Min. :0.00678 Min. :0.0034 176s 1st Qu.:-1.8749 1st Qu.:13.2 1st Qu.:0.23966 1st Qu.:0.2466 176s Median : 0.2453 Median :25.5 Median :0.48668 Median :0.4525 176s Mean : 0.0167 Mean :25.5 Mean :0.49966 Mean :0.4969 176s 3rd Qu.: 2.0201 3rd Qu.:37.8 3rd Qu.:0.74730 3rd Qu.:0.7394 176s Max. : 7.3541 Max. :50.0 Max. :0.98754 Max. :0.9872 176s z 176s Min. :0.00164 176s 1st Qu.:0.18646 176s Median :0.44850 176s Mean :0.47142 176s 3rd Qu.:0.72403 176s Max. :0.99420 176s > 176s BEGIN TEST fit.R 176s 176s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 176s > library(sp) 176s > data(meuse) 176s > library(gstat) 177s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 177s > v$gamma=c(0.5,1,2,3,3) 177s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 177s Warning message: 177s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 177s partial sill or nugget fixed at zero value 177s model psill range 177s 1 Nug 0.000000 0.00 177s 2 Sph 7.878195 1567.77 177s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 177s model psill range 177s 1 Nug 0.000000 0.00 177s 2 Sph 7.878195 1567.77 177s > 177s BEGIN TEST krige0.R 177s 177s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 177s Copyright (C) 2025 The R Foundation for Statistical Computing 177s Platform: x86_64-pc-linux-gnu 177s 177s R is free software and comes with ABSOLUTELY NO WARRANTY. 177s You are welcome to redistribute it under certain conditions. 177s Type 'license()' or 'licence()' for distribution details. 177s 177s R is a collaborative project with many contributors. 177s Type 'contributors()' for more information and 177s 'citation()' on how to cite R or R packages in publications. 177s 177s Type 'demo()' for some demos, 'help()' for on-line help, or 177s 'help.start()' for an HTML browser interface to help. 177s Type 'q()' to quit R. 177s 177s > # test -- load data: 177s > library(sp) 177s > data(meuse) 177s > coordinates(meuse) = ~x+y 177s > data(meuse.grid) 177s > gridded(meuse.grid) = ~x+y 177s > 177s > library(gstat) 177s > # test -- idw 177s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 177s > x <- idw(zinc~1, meuse, meuse.grid) 177s [inverse distance weighted interpolation] 177s > all.equal(x$var1.pred, meuse.grid$idw) 177s [1] TRUE 177s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 177s > v = vgm(1, "Exp", 500) 177s > # test sk: 177s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 177s > rownames(x0$pred)=NULL 177s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 177s [using simple kriging] 177s > all.equal(x$var1.pred, x0$pred[,1]) 177s [1] TRUE 177s > all.equal(x$var1.var, x0$var) 177s [1] TRUE 177s > # test ok: 177s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 177s > rownames(x0$pred)=NULL 177s > names(x0$var)=NULL 177s > x <- krige(zinc~1, meuse, meuse.grid, v) 177s [using ordinary kriging] 178s > all.equal(x$var1.pred, x0$pred[,1]) 178s [1] TRUE 178s > all.equal(x$var1.var, x0$var) 178s [1] TRUE 178s > # test uk: 178s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 178s > rownames(x0$pred)=NULL 178s > names(x0$var)=NULL 178s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 178s [using universal kriging] 178s > all.equal(x$var1.pred, x0$pred[,1]) 178s [1] TRUE 178s > all.equal(x$var1.var, x0$var) 178s [1] TRUE 178s > 178s BEGIN TEST line.R 178s 178s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > options(digits=5) 178s > library(sp) 178s > data(meuse.grid) 178s > gridded(meuse.grid) = ~x+y 178s > data(meuse) 178s > coordinates(meuse) = ~x+y 178s > 178s > # choose arbitrary line over the grid: 178s > image(meuse.grid["dist"],axes=T) 178s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 178s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 178s > plot(Sl,add=T,col='green') 178s > 178s > # use the default spsample arguments of predict.gstat: 178s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 178s > plot(pts, pch=3, cex=.2, add=T) 178s > 178s > library(gstat) 178s > v = vgm(.6, "Sph", 900, .06) 178s > out1 = krige(log(zinc)~1, meuse, Sl, v) 178s [using ordinary kriging] 178s > out1 178s An object of class "SpatialLinesDataFrame" 178s Slot "data": 178s x y var1.pred var1.var 178s a 180333 332167 6.1618 0.008025 178s 178s Slot "lines": 178s [[1]] 178s An object of class "Lines" 178s Slot "Lines": 178s [[1]] 178s An object of class "Line" 178s Slot "coords": 178s [,1] [,2] 178s [1,] 180000 331000 178s [2,] 180000 332000 178s [3,] 181000 333500 178s 178s 178s 178s Slot "ID": 178s [1] "a" 178s 178s 178s 178s Slot "bbox": 178s min max 178s x 180000 181000 178s y 331000 333500 178s 178s Slot "proj4string": 178s Coordinate Reference System: 178s Deprecated Proj.4 representation: NA 178s 178s > 178s > points(180333,332167,pch=3,cex=2) 178s > 178s > # use the same line as block discretization, and predict for (0,0) 178s > # (because the block discretizing points are not centered) 178s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 178s [using ordinary kriging] 178s > out2 178s coordinates var1.pred var1.var 178s 1 (0, 0) 6.1618 0.008025 178s > 178s > compare.krigingLines = function(formula, data, newdata, model) { 178s + out1 = krige(formula, data, newdata, model) 178s + pts = spsample(newdata, n=500, 'regular', offset=.5) 178s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 178s + print("difference:") 178s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 178s + } 178s > 178s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 178s [using ordinary kriging] 178s [using ordinary kriging] 178s [1] "difference:" 178s var1.pred var1.var 178s a 0 0 178s > 178s > # one line, consisting of two line segments: 178s > pp2 = rbind(c(181000,333500),c(181000,332500)) 178s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 178s > krige(log(zinc)~1, meuse, Sl2, v) 178s [using ordinary kriging] 178s An object of class "SpatialLinesDataFrame" 178s Slot "data": 178s x y var1.pred var1.var 178s a 180667 332583 6.0424 0.0053191 178s 178s Slot "lines": 178s [[1]] 178s An object of class "Lines" 178s Slot "Lines": 178s [[1]] 178s An object of class "Line" 178s Slot "coords": 178s [,1] [,2] 178s [1,] 180000 331000 178s [2,] 180000 332000 178s [3,] 181000 333500 178s 178s 178s [[2]] 178s An object of class "Line" 178s Slot "coords": 178s [,1] [,2] 178s [1,] 181000 333500 178s [2,] 181000 332500 178s 178s 178s 178s Slot "ID": 178s [1] "a" 178s 178s 178s 178s Slot "bbox": 178s min max 178s x 180000 181000 178s y 331000 333500 178s 178s Slot "proj4string": 178s Coordinate Reference System: 178s Deprecated Proj.4 representation: NA 178s 178s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 178s [using ordinary kriging] 178s [using ordinary kriging] 178s [1] "difference:" 178s var1.pred var1.var 178s a 0 0 178s > 178s > # two seperate line segments: 178s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 178s > krige(log(zinc)~1, meuse, Sl3, v) 178s [using ordinary kriging] 178s An object of class "SpatialLinesDataFrame" 178s Slot "data": 178s x y var1.pred var1.var 178s a 180333 332167 6.1618 0.008025 178s b 181000 333000 5.7060 0.011043 178s 178s Slot "lines": 178s [[1]] 178s An object of class "Lines" 178s Slot "Lines": 178s [[1]] 178s An object of class "Line" 178s Slot "coords": 178s [,1] [,2] 178s [1,] 180000 331000 178s [2,] 180000 332000 178s [3,] 181000 333500 178s 178s 178s 178s Slot "ID": 178s [1] "a" 178s 178s 178s [[2]] 178s An object of class "Lines" 178s Slot "Lines": 178s [[1]] 178s An object of class "Line" 178s Slot "coords": 178s [,1] [,2] 178s [1,] 181000 333500 178s [2,] 181000 332500 178s 178s 178s 178s Slot "ID": 178s [1] "b" 178s 178s 178s 178s Slot "bbox": 178s min max 178s x 180000 181000 178s y 331000 333500 178s 178s Slot "proj4string": 178s Coordinate Reference System: 178s Deprecated Proj.4 representation: NA 178s 178s > 178s BEGIN TEST merge.R 178s 178s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > options(digits=6) 178s > # illustrates the use of merge, for merging parameters accross variables: 178s > # Z1=m+e1(s) 178s > # Z2=m+e2(s) 178s > # Z1 and Z2 each have a different variogram, but share the parameter m 178s > # see documentation of gstat() function 178s > library(gstat) 179s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 179s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 179s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 179s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 179s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 179s > predict(g, data.frame(x=1,y=1), debug = 32) 179s Intrinsic Correlation found. Good. 179s [using ordinary cokriging] 179s we're at location X: 1 Y: 1 Z: 0 179s zero block size 179s we're at point X: 1 Y: 1 Z: 0 179s 179s # X: 179s #Matrix: 4 by 1 179s rbind( 179s c( 1.000000), # row 1 179s c( 1.000000), # row 2 179s c( 1.000000), # row 3 179s c( 1.000000) # row 4 179s ) 179s [using generalized covariances: max_val - semivariance()] 179s # Covariances (x_i, x_j) matrix C (upper triangle): 179s #Matrix: 4 by 4 179s rbind( 179s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 179s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 179s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 179s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 179s ) 179s 179s # glm->C, Choleski decomposed:: 179s #Matrix: 4 by 4 179s rbind( 179s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 179s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 179s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 179s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 179s ) 179s 179s # X'C-1 X: 179s #Matrix: 1 by 1 179s rbind( 179s c( 3.245289) # row 1 179s ) 179s 179s # beta: 179s #Vector: dim: 1 179s c( 2.500000) 179s # Cov(beta), (X'C-1 X)-1: 179s #Matrix: 1 by 1 179s rbind( 179s c( 0.308139) # row 1 179s ) 179s 179s # Corr(beta): 179s #Matrix: 1 by 1 179s rbind( 179s c( 1.000000) # row 1 179s ) 179s 179s # X0 (X values at prediction location x0): 179s #Matrix: 1 by 2 179s rbind( 179s c( 1.000000, 1.000000) # row 1 179s ) 179s 179s # BLUE(mu), E(y(x0)) = X0'beta: 179s #Vector: dim: 2 179s c( 2.500000, 2.500000) 179s # Covariances (x_i, x_0), C0: 179s #Matrix: 4 by 2 179s rbind( 179s c( 0.243117, 0.121558), # row 1 179s c( 0.243117, 0.121558), # row 2 179s c( 0.121558, 0.243117), # row 3 179s c( 0.121558, 0.243117) # row 4 179s ) 179s 179s # C-1 C0: 179s #Matrix: 4 by 2 179s rbind( 179s c( 0.206482, 0.089387), # row 1 179s c( 0.206482, 0.089387), # row 2 179s c( 0.089387, 0.206482), # row 3 179s c( 0.089387, 0.206482) # row 4 179s ) 179s 179s # [a] Cov_ij(B,B) or Cov_ij(0,0): 179s #Matrix: 2 by 2 179s rbind( 179s c( 1.000000, 0.500000), # row 1 179s c( 0.500000, 1.000000) # row 2 179s ) 179s 179s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 179s #Matrix: 2 by 2 179s rbind( 179s c( 0.051360, 0.051360), # row 1 179s c( 0.051360, 0.051360) # row 2 179s ) 179s 179s # [b] c0'C-1 c0: 179s #Matrix: 2 by 2 179s rbind( 179s c( 0.122130, 0.093662), # row 1 179s c( 0.093662, 0.122130) # row 2 179s ) 179s 179s # Best Linear Unbiased Predictor: 179s #Vector: dim: 2 179s c( 2.031619, 2.968381) 179s # MSPE ([a]-[b]+[c]): 179s #Matrix: 2 by 2 179s rbind( 179s c( 0.929230, 0.457698), # row 1 179s c( 0.457698, 0.929230) # row 2 179s ) 179s 179s # kriging weights: 179s #Matrix: 4 by 2 179s rbind( 179s c( 0.308548, 0.191452), # row 1 179s c( 0.308548, 0.191452), # row 2 179s c( 0.191452, 0.308548), # row 3 179s c( 0.191452, 0.308548) # row 4 179s ) 179s 179s 179s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 179s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 179s > 179s > # Z1 and Z2 share a regression slope: 179s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 179s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 179s + merge=list(c("d1",2,"d2",2))) 179s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 179s > predict(g, data.frame(x=1,y=1), debug = 32) 179s Intrinsic Correlation found. Good. 179s [using universal cokriging] 179s we're at location X: 1 Y: 1 Z: 0 179s zero block size 179s we're at point X: 1 Y: 1 Z: 0 179s 179s # X: 179s #Matrix: 4 by 3 179s rbind( 179s c( 1.000000, 0.000000, 0.000000), # row 1 179s c( 1.000000, 2.000000, 0.000000), # row 2 179s c( 0.000000, 0.000000, 1.000000), # row 3 179s c( 0.000000, 2.000000, 1.000000) # row 4 179s ) 179s [using generalized covariances: max_val - semivariance()] 179s # Covariances (x_i, x_j) matrix C (upper triangle): 179s #Matrix: 4 by 4 179s rbind( 179s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 179s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 179s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 179s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 179s ) 179s 179s # glm->C, Choleski decomposed:: 179s #Matrix: 4 by 4 179s rbind( 179s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 179s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 179s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 179s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 179s ) 179s 179s # X'C-1 X: 179s #Matrix: 3 by 3 179s rbind( 179s c( 1.774607, 1.622645, -0.151962), # row 1 179s c( 1.622645, 7.676050, 1.622645), # row 2 179s c(-0.151962, 1.622645, 1.774607) # row 3 179s ) 179s 179s # beta: 179s #Vector: dim: 3 179s c( 0.000000, 0.500000, 4.000000) 179s # Cov(beta), (X'C-1 X)-1: 179s #Matrix: 3 by 3 179s rbind( 179s c( 0.793363, -0.225695, 0.274305), # row 1 179s c(-0.225695, 0.225695, -0.225695), # row 2 179s c( 0.274305, -0.225695, 0.793363) # row 3 179s ) 179s 179s # Corr(beta): 179s #Matrix: 3 by 3 179s rbind( 179s c( 1.000000, -0.533366, 0.345750), # row 1 179s c(-0.533366, 1.000000, -0.533366), # row 2 179s c( 0.345750, -0.533366, 1.000000) # row 3 179s ) 179s 179s # X0 (X values at prediction location x0): 179s #Matrix: 3 by 2 179s rbind( 179s c( 1.000000, 0.000000), # row 1 179s c( 1.000000, 1.000000), # row 2 179s c( 0.000000, 1.000000) # row 3 179s ) 179s 179s # BLUE(mu), E(y(x0)) = X0'beta: 179s #Vector: dim: 2 179s c( 0.500000, 4.500000) 179s # Covariances (x_i, x_0), C0: 179s #Matrix: 4 by 2 179s rbind( 179s c( 0.243117, 0.121558), # row 1 179s c( 0.243117, 0.121558), # row 2 179s c( 0.121558, 0.243117), # row 3 179s c( 0.121558, 0.243117) # row 4 179s ) 179s 179s # C-1 C0: 179s #Matrix: 4 by 2 179s rbind( 179s c( 0.206482, 0.089387), # row 1 179s c( 0.206482, 0.089387), # row 2 179s c( 0.089387, 0.206482), # row 3 179s c( 0.089387, 0.206482) # row 4 179s ) 179s 179s # [a] Cov_ij(B,B) or Cov_ij(0,0): 179s #Matrix: 2 by 2 179s rbind( 179s c( 1.000000, 0.500000), # row 1 179s c( 0.500000, 1.000000) # row 2 179s ) 179s 179s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 179s #Matrix: 2 by 2 179s rbind( 179s c( 0.203564, -0.100844), # row 1 179s c(-0.100844, 0.203564) # row 2 179s ) 179s 179s # [b] c0'C-1 c0: 179s #Matrix: 2 by 2 179s rbind( 179s c( 0.122130, 0.093662), # row 1 179s c( 0.093662, 0.122130) # row 2 179s ) 179s 179s # Best Linear Unbiased Predictor: 179s #Vector: dim: 2 179s c( 0.500000, 4.500000) 179s # MSPE ([a]-[b]+[c]): 179s #Matrix: 2 by 2 179s rbind( 179s c( 1.081434, 0.305494), # row 1 179s c( 0.305494, 1.081434) # row 2 179s ) 179s 179s # kriging weights: 179s #Matrix: 4 by 2 179s rbind( 179s c( 0.500000, 0.000000), # row 1 179s c( 0.500000, 0.000000), # row 2 179s c( 0.000000, 0.500000), # row 3 179s c( 0.000000, 0.500000) # row 4 179s ) 179s 179s 179s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 179s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 179s > 179s BEGIN TEST na.action.R 179s 179s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > library(sp) 179s > 179s > data(meuse) 179s > data(meuse.grid) 179s > 179s > set.seed(13131) # reproduce results 179s > 179s > # select 10 random rows; 179s > # create two missing values in the coordinates: 179s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 179s > m[c(2,8), "x"] = NA 179s > 179s > library(gstat) 179s > ## this is not allowed anymore: 179s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 179s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 179s missing values in object 179s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 179s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 179s missing values in object 179s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 179s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 179s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 179s missing values in object 179s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 179s missing values in object 179s > 179s > # select 10 random rows; 179s > # create two missing values in the regressor variable: 179s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 179s > m[c(3,7), "dist"] = NA 179s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 179s [ordinary or weighted least squares prediction] 179s x y var1.pred var1.var 179s 1 178860 330860 6.530134 0.2415196 179s 2 180260 331860 5.389567 0.2406041 179s 3 180100 331860 NA NA 179s 4 180460 331820 5.213370 0.2417197 179s 5 179660 330580 5.550859 0.2398778 179s 6 179740 330300 6.108648 0.2395392 179s 7 180220 330660 NA NA 179s 8 178580 329820 6.533801 0.2415453 179s 9 180100 331900 5.580264 0.2397758 179s 10 180780 331900 5.095967 0.2426499 179s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 179s [ordinary or weighted least squares prediction] 179s x y var1.pred var1.var 179s 1877 178860 330860 6.530134 0.2415196 179s 1015 180260 331860 5.389567 0.2406041 179s 1056 180460 331820 5.213370 0.2417197 179s 2199 179660 330580 5.550859 0.2398778 179s 2556 179740 330300 6.108648 0.2395392 179s 2985 178580 329820 6.533801 0.2415453 179s 975 180100 331900 5.580264 0.2397758 179s 992 180780 331900 5.095967 0.2426499 179s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 179s [ordinary or weighted least squares prediction] 179s x y var1.pred var1.var 179s 1877 178860 330860 6.530134 0.2415196 179s 1015 180260 331860 5.389567 0.2406041 179s 1056 180460 331820 5.213370 0.2417197 179s 2199 179660 330580 5.550859 0.2398778 179s 2556 179740 330300 6.108648 0.2395392 179s 2985 178580 329820 6.533801 0.2415453 179s 975 180100 331900 5.580264 0.2397758 179s 992 180780 331900 5.095967 0.2426499 179s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 179s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 179s missing values in object 179s > 179s BEGIN TEST rings.R 179s 179s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > library(sp) 180s > library(gstat) 180s > set.seed(13331) 180s > 180s > x = runif(10) 180s > y = runif(10) 180s > z = rnorm(10) 180s > d = data.frame(x=x,y=y,z=z) 180s > bl = c(1,1) 180s > 180s > nd = data.frame(x=.5, y=.5) 180s > 180s > # single block: 180s > library(sp) 180s > coordinates(d) = ~x+y 180s > nd = SpatialPoints(nd) 180s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 180s + set = list(nb=4)) 180s [using ordinary kriging] 180s > 180s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 180s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 180s > a = data.frame(a = 1, b = 2) 180s > rownames(a) = "xx" 180s > r1df = SpatialPolygonsDataFrame(r1, a) 180s > 180s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 180s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 180s > yy = predict(g, r1df, block = bl, sps.args = args) 180s [using ordinary kriging] 180s > 180s > xx = as.data.frame(xx) 180s > yy = as.data.frame(yy) 180s > row.names(xx) = row.names(yy) 180s > print(all.equal(xx,yy)) 180s [1] TRUE 180s > 180s > ## multiple blocks of equal size: 180s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 180s > nd = SpatialPoints(nd) 180s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 180s + set = list(nb=4)) 180s [using ordinary kriging] 180s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 180s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 180s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 180s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 180s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 180s > r1 = SpatialPolygons(list( 180s + Polygons(list(Polygon(ring0)), ID = "x0"), 180s + Polygons(list(Polygon(ring1)), ID = "x1"), 180s + Polygons(list(Polygon(ring2)), ID = "x2"), 180s + Polygons(list(Polygon(ring3)), ID = "x3"), 180s + Polygons(list(Polygon(ring4)), ID = "x4") 180s + )) 180s > df = data.frame(a=rep(1,5), b= rep(1,5)) 180s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 180s > r1df = SpatialPolygonsDataFrame(r1, df) 180s > 180s > yy = predict(g, r1, block = bl, sps.args = args) 180s [using ordinary kriging] 180s > xx = as.data.frame(xx) 180s > yy = as.data.frame(yy) 180s > row.names(xx) = row.names(yy) 180s > all.equal(xx, yy) 180s [1] TRUE 180s > 180s > ## multiple blocks of equal size: 180s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 180s > yy = predict(g, r1, block = bl, sps.args = args) 180s [using ordinary kriging] 180s > xx = as.data.frame(xx) 180s > yy = as.data.frame(yy) 180s > row.names(xx) = row.names(yy) 180s > print(all.equal(xx, yy)) 180s [1] TRUE 180s > 180s > ## multiple blocks of varying size: 180s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 180s > nd = SpatialPoints(nd) 180s > bl = c(1,1) 180s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 180s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 180s + set = list(nb=4)) 180s [using ordinary kriging] 180s > bl = c(2,2) 180s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 180s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 180s + set = list(nb=4)) 180s [using ordinary kriging] 180s > bl = c(3,3) 180s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 180s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 180s + set = list(nb=4)) 180s [using ordinary kriging] 180s > r1 = SpatialPolygons(list( 180s + Polygons(list(Polygon(ring0)), ID = "x0"), 180s + Polygons(list(Polygon(ring1)), ID = "x1"), 180s + Polygons(list(Polygon(ring2)), ID = "x2") 180s + )) 180s > df = data.frame(a = rep(1,3), b = rep(1,3)) 180s > rownames(df) = c("x0", "x1", "x2") 180s > r1df = SpatialPolygonsDataFrame(r1, df) 180s > 180s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 180s > yy = predict(g, r1df, block = bl, sps.args = args) 180s [using ordinary kriging] 180s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 180s > row.names(xx) = 1:3 180s > xx = as.data.frame(xx) 180s > yy = as.data.frame(yy) 180s > row.names(xx) = row.names(yy) 180s > print(all.equal(xx, yy)) 180s [1] TRUE 180s > 180s BEGIN TEST sim.R 180s 180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 180s Copyright (C) 2025 The R Foundation for Statistical Computing 180s Platform: x86_64-pc-linux-gnu 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > options(digits=6) 180s > library(sp) 180s > data(meuse) 180s > set.seed(158229572) 180s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 180s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 180s > library(gstat) 180s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 180s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 180s + block = c(40,40), nmax = 40, nsim = 10) 180s drawing 10 GLS realisations of beta... 180s [using conditional Gaussian simulation] 180s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 180s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 180s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 180s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 180s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 180s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 180s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 180s sim8 sim9 sim10 180s 1 294.107 113.347 279.991 180s 2 776.498 724.160 901.692 180s 3 338.021 630.244 140.272 180s 4 127.301 957.242 444.007 180s 5 533.773 748.144 623.960 180s 6 1084.170 537.604 -214.972 180s > 180s BEGIN TEST stars.R 180s 180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 180s Copyright (C) 2025 The R Foundation for Statistical Computing 180s Platform: x86_64-pc-linux-gnu 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > Sys.setenv(TZ = "UTC") 180s > 180s > # 0. using sp: 180s > 180s > suppressPackageStartupMessages(library(sp)) 181s > demo(meuse, ask = FALSE) 181s 181s 181s demo(meuse) 181s ---- ~~~~~ 181s 181s > require(sp) 181s 181s > crs = CRS("EPSG:28992") 181s 181s > data("meuse") 181s 181s > coordinates(meuse) <- ~x+y 181s 181s > proj4string(meuse) <- crs 181s 181s > data("meuse.grid") 181s 181s > coordinates(meuse.grid) <- ~x+y 181s 181s > gridded(meuse.grid) <- TRUE 181s 181s > proj4string(meuse.grid) <- crs 181s 181s > data("meuse.riv") 181s 181s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 181s 181s > proj4string(meuse.riv) <- crs 181s 181s > data("meuse.area") 181s 181s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 181s 181s > proj4string(meuse.area) <- crs 181s > suppressPackageStartupMessages(library(gstat)) 181s > v = variogram(log(zinc)~1, meuse) 181s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 181s model psill range 181s 1 Nug 0.05066243 0.0000 181s 2 Sph 0.59060780 897.0209 181s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 181s [using ordinary kriging] 181s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 181s [using ordinary kriging] 181s > 181s > # 1. using sf: 181s > suppressPackageStartupMessages(library(sf)) 181s > demo(meuse_sf, ask = FALSE, echo = FALSE) 181s > # reloads meuse as data.frame, so 181s > demo(meuse, ask = FALSE) 181s 181s 181s demo(meuse) 181s ---- ~~~~~ 181s 181s > require(sp) 181s 181s > crs = CRS("EPSG:28992") 181s 181s > data("meuse") 181s 181s > coordinates(meuse) <- ~x+y 181s 181s > proj4string(meuse) <- crs 181s 181s > data("meuse.grid") 181s 181s > coordinates(meuse.grid) <- ~x+y 181s 181s > gridded(meuse.grid) <- TRUE 181s 181s > proj4string(meuse.grid) <- crs 181s 181s > data("meuse.riv") 181s 181s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 181s 181s > proj4string(meuse.riv) <- crs 181s 181s > data("meuse.area") 181s 181s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 181s 181s > proj4string(meuse.area) <- crs 181s > 181s > v = variogram(log(zinc)~1, meuse_sf) 181s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 181s model psill range 181s 1 Nug 0.05066243 0.0000 181s 2 Sph 0.59060780 897.0209 181s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 181s [using ordinary kriging] 181s > 181s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 181s [1] TRUE 181s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 182s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 182s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 182s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 182s > 182s > # 2. using stars for grid: 182s > 182s > suppressPackageStartupMessages(library(stars)) 182s > st = st_as_stars(meuse.grid) 182s > st_crs(st) 182s Coordinate Reference System: 182s User input: Amersfoort / RD New 182s wkt: 182s PROJCRS["Amersfoort / RD New", 182s BASEGEOGCRS["Amersfoort", 182s DATUM["Amersfoort", 182s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 182s LENGTHUNIT["metre",1]]], 182s PRIMEM["Greenwich",0, 182s ANGLEUNIT["degree",0.0174532925199433]], 182s ID["EPSG",4289]], 182s CONVERSION["RD New", 182s METHOD["Oblique Stereographic", 182s ID["EPSG",9809]], 182s PARAMETER["Latitude of natural origin",52.1561605555556, 182s ANGLEUNIT["degree",0.0174532925199433], 182s ID["EPSG",8801]], 182s PARAMETER["Longitude of natural origin",5.38763888888889, 182s ANGLEUNIT["degree",0.0174532925199433], 182s ID["EPSG",8802]], 182s PARAMETER["Scale factor at natural origin",0.9999079, 182s SCALEUNIT["unity",1], 182s ID["EPSG",8805]], 182s PARAMETER["False easting",155000, 182s LENGTHUNIT["metre",1], 182s ID["EPSG",8806]], 182s PARAMETER["False northing",463000, 182s LENGTHUNIT["metre",1], 182s ID["EPSG",8807]]], 182s CS[Cartesian,2], 182s AXIS["easting (X)",east, 182s ORDER[1], 182s LENGTHUNIT["metre",1]], 182s AXIS["northing (Y)",north, 182s ORDER[2], 182s LENGTHUNIT["metre",1]], 182s USAGE[ 182s SCOPE["Engineering survey, topographic mapping."], 182s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 182s BBOX[50.75,3.2,53.7,7.22]], 182s ID["EPSG",28992]] 182s > 182s > # compare inputs: 182s > sp = as(st, "Spatial") 182s > fullgrid(meuse.grid) = TRUE 182s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 182s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 182s [2] "Names: 1 string mismatch" 182s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 182s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 182s [2] "Names: 1 string mismatch" 182s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 182s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 182s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 182s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 182s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 182s > 182s > # kriging: 182s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 182s > k_st = if (Sys.getenv("USER") == "travis") { 182s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 182s + } else { 182s + krige(log(zinc)~1, meuse_sf, st, v.fit) 182s + } 182s [using ordinary kriging] 182s > k_st 182s stars object with 2 dimensions and 2 attributes 182s attribute(s): 182s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 182s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 182s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 182s dimension(s): 182s from to offset delta x/y 182s x 1 78 178440 40 [x] 182s y 1 104 333760 -40 [y] 182s > 182s > # handle factors, when going to stars? 182s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 182s > st_as_stars(k_sp_grd) 182s stars object with 2 dimensions and 3 attributes 182s attribute(s): 182s var1.pred var1.var cls 182s Min. :4.777 Min. :0.0855 (0,5]: 316 182s 1st Qu.:5.238 1st Qu.:0.1373 (5,6]:1778 182s Median :5.573 Median :0.1622 (6,7]: 962 182s Mean :5.707 Mean :0.1853 (7,8]: 47 182s 3rd Qu.:6.172 3rd Qu.:0.2116 (8,9]: 0 182s Max. :7.440 Max. :0.5003 NA's :5009 182s NA's :5009 NA's :5009 182s dimension(s): 182s from to offset delta refsys x/y 182s x 1 78 178440 40 Amersfoort / RD New [x] 182s y 1 104 333760 -40 Amersfoort / RD New [y] 182s > if (require(raster, quietly = TRUE)) { 182s + print(st_as_stars(raster::stack(k_sp_grd))) # check 182s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 182s + } 184s stars object with 3 dimensions and 1 attribute 184s attribute(s): 184s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 184s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 184s dimension(s): 184s from to offset delta refsys values 184s x 1 78 178440 40 Amersfoort / RD New NULL 184s y 1 104 333760 -40 Amersfoort / RD New NULL 184s band 1 3 NA NA NA var1.pred, var1.var , cls 184s x/y 184s x [x] 184s y [y] 184s band 185s [1] TRUE 185s > 185s > suppressPackageStartupMessages(library(spacetime)) 185s > 185s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 185s > n = 4 185s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 185s + stars:::create_dimensions(list( 185s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 185s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 185s + time = stars:::create_dimension(values = tm + 1:n)), 185s + raster = stars:::get_raster(dimensions = c("x", "y"))) 185s + ) 185s > s 185s stars object with 3 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s foo 1 16.75 32.5 32.5 48.25 64 185s dimension(s): 185s from to offset delta refsys x/y 185s x 1 4 10 0.5 NA [x] 185s y 1 4 0 -0.7 NA [y] 185s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 185s > 185s > as.data.frame(s) 185s x y time foo 185s 1 10.25 -0.35 2019-02-25 15:37:25 1 185s 2 10.75 -0.35 2019-02-25 15:37:25 2 185s 3 11.25 -0.35 2019-02-25 15:37:25 3 185s 4 11.75 -0.35 2019-02-25 15:37:25 4 185s 5 10.25 -1.05 2019-02-25 15:37:25 5 185s 6 10.75 -1.05 2019-02-25 15:37:25 6 185s 7 11.25 -1.05 2019-02-25 15:37:25 7 185s 8 11.75 -1.05 2019-02-25 15:37:25 8 185s 9 10.25 -1.75 2019-02-25 15:37:25 9 185s 10 10.75 -1.75 2019-02-25 15:37:25 10 185s 11 11.25 -1.75 2019-02-25 15:37:25 11 185s 12 11.75 -1.75 2019-02-25 15:37:25 12 185s 13 10.25 -2.45 2019-02-25 15:37:25 13 185s 14 10.75 -2.45 2019-02-25 15:37:25 14 185s 15 11.25 -2.45 2019-02-25 15:37:25 15 185s 16 11.75 -2.45 2019-02-25 15:37:25 16 185s 17 10.25 -0.35 2019-02-25 15:37:26 17 185s 18 10.75 -0.35 2019-02-25 15:37:26 18 185s 19 11.25 -0.35 2019-02-25 15:37:26 19 185s 20 11.75 -0.35 2019-02-25 15:37:26 20 185s 21 10.25 -1.05 2019-02-25 15:37:26 21 185s 22 10.75 -1.05 2019-02-25 15:37:26 22 185s 23 11.25 -1.05 2019-02-25 15:37:26 23 185s 24 11.75 -1.05 2019-02-25 15:37:26 24 185s 25 10.25 -1.75 2019-02-25 15:37:26 25 185s 26 10.75 -1.75 2019-02-25 15:37:26 26 185s 27 11.25 -1.75 2019-02-25 15:37:26 27 185s 28 11.75 -1.75 2019-02-25 15:37:26 28 185s 29 10.25 -2.45 2019-02-25 15:37:26 29 185s 30 10.75 -2.45 2019-02-25 15:37:26 30 185s 31 11.25 -2.45 2019-02-25 15:37:26 31 185s 32 11.75 -2.45 2019-02-25 15:37:26 32 185s 33 10.25 -0.35 2019-02-25 15:37:27 33 185s 34 10.75 -0.35 2019-02-25 15:37:27 34 185s 35 11.25 -0.35 2019-02-25 15:37:27 35 185s 36 11.75 -0.35 2019-02-25 15:37:27 36 185s 37 10.25 -1.05 2019-02-25 15:37:27 37 185s 38 10.75 -1.05 2019-02-25 15:37:27 38 185s 39 11.25 -1.05 2019-02-25 15:37:27 39 185s 40 11.75 -1.05 2019-02-25 15:37:27 40 185s 41 10.25 -1.75 2019-02-25 15:37:27 41 185s 42 10.75 -1.75 2019-02-25 15:37:27 42 185s 43 11.25 -1.75 2019-02-25 15:37:27 43 185s 44 11.75 -1.75 2019-02-25 15:37:27 44 185s 45 10.25 -2.45 2019-02-25 15:37:27 45 185s 46 10.75 -2.45 2019-02-25 15:37:27 46 185s 47 11.25 -2.45 2019-02-25 15:37:27 47 185s 48 11.75 -2.45 2019-02-25 15:37:27 48 185s 49 10.25 -0.35 2019-02-25 15:37:28 49 185s 50 10.75 -0.35 2019-02-25 15:37:28 50 185s 51 11.25 -0.35 2019-02-25 15:37:28 51 185s 52 11.75 -0.35 2019-02-25 15:37:28 52 185s 53 10.25 -1.05 2019-02-25 15:37:28 53 185s 54 10.75 -1.05 2019-02-25 15:37:28 54 185s 55 11.25 -1.05 2019-02-25 15:37:28 55 185s 56 11.75 -1.05 2019-02-25 15:37:28 56 185s 57 10.25 -1.75 2019-02-25 15:37:28 57 185s 58 10.75 -1.75 2019-02-25 15:37:28 58 185s 59 11.25 -1.75 2019-02-25 15:37:28 59 185s 60 11.75 -1.75 2019-02-25 15:37:28 60 185s 61 10.25 -2.45 2019-02-25 15:37:28 61 185s 62 10.75 -2.45 2019-02-25 15:37:28 62 185s 63 11.25 -2.45 2019-02-25 15:37:28 63 185s 64 11.75 -2.45 2019-02-25 15:37:28 64 185s > plot(s, col = sf.colors(), axes = TRUE) 185s > (s.stfdf = as(s, "STFDF")) 185s An object of class "STFDF" 185s Slot "data": 185s foo 185s 1 1 185s 2 2 185s 3 3 185s 4 4 185s 5 5 185s 6 6 185s 7 7 185s 8 8 185s 9 9 185s 10 10 185s 11 11 185s 12 12 185s 13 13 185s 14 14 185s 15 15 185s 16 16 185s 17 17 185s 18 18 185s 19 19 185s 20 20 185s 21 21 185s 22 22 185s 23 23 185s 24 24 185s 25 25 185s 26 26 185s 27 27 185s 28 28 185s 29 29 185s 30 30 185s 31 31 185s 32 32 185s 33 33 185s 34 34 185s 35 35 185s 36 36 185s 37 37 185s 38 38 185s 39 39 185s 40 40 185s 41 41 185s 42 42 185s 43 43 185s 44 44 185s 45 45 185s 46 46 185s 47 47 185s 48 48 185s 49 49 185s 50 50 185s 51 51 185s 52 52 185s 53 53 185s 54 54 185s 55 55 185s 56 56 185s 57 57 185s 58 58 185s 59 59 185s 60 60 185s 61 61 185s 62 62 185s 63 63 185s 64 64 185s 185s Slot "sp": 185s Object of class SpatialPixels 185s Grid topology: 185s cellcentre.offset cellsize cells.dim 185s x 10.25 0.5 4 185s y -2.45 0.7 4 185s SpatialPoints: 185s x y 185s [1,] 10.25 -0.35 185s [2,] 10.75 -0.35 185s [3,] 11.25 -0.35 185s [4,] 11.75 -0.35 185s [5,] 10.25 -1.05 185s [6,] 10.75 -1.05 185s [7,] 11.25 -1.05 185s [8,] 11.75 -1.05 185s [9,] 10.25 -1.75 185s [10,] 10.75 -1.75 185s [11,] 11.25 -1.75 185s [12,] 11.75 -1.75 185s [13,] 10.25 -2.45 185s [14,] 10.75 -2.45 185s [15,] 11.25 -2.45 185s [16,] 11.75 -2.45 185s Coordinate Reference System (CRS) arguments: NA 185s 185s Slot "time": 185s timeIndex 185s 2019-02-25 15:37:25 1 185s 2019-02-25 15:37:26 2 185s 2019-02-25 15:37:27 3 185s 2019-02-25 15:37:28 4 185s 185s Slot "endTime": 185s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 185s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 185s 185s > stplot(s.stfdf, scales = list(draw = TRUE)) 185s > 185s > (s2 = st_as_stars(s.stfdf)) 185s stars object with 3 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s foo 1 16.75 32.5 32.5 48.25 64 185s dimension(s): 185s from to offset delta refsys x/y 185s x 1 4 10 0.5 NA [x] 185s y 1 4 -1.11e-16 -0.7 NA [y] 185s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 185s > plot(s2, col = sf.colors(), axes = TRUE) 185s > all.equal(s, s2, check.attributes = FALSE) 185s [1] TRUE 185s > 185s > # multiple simulations: 185s > data(meuse, package = "sp") 185s > data(meuse.grid, package = "sp") 185s > coordinates(meuse.grid) <- ~x+y 185s > gridded(meuse.grid) <- TRUE 185s > meuse.grid = st_as_stars(meuse.grid) 185s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 185s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 185s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 185s > set.seed(123) 185s > ## IGNORE_RDIFF_BEGIN 185s > (p = predict(g, meuse.grid, nsim = 5)) 185s drawing 5 multivariate GLS realisations of beta... 185s [using conditional Gaussian simulation] 185s stars object with 3 dimensions and 2 attributes 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 185s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 185s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 185s dimension(s): 185s from to offset delta values x/y 185s x 1 78 178440 40 NULL [x] 185s y 1 104 333760 -40 NULL [y] 185s sample 1 5 NA NA sim1,...,sim5 185s > ## IGNORE_RDIFF_END 185s > 185s BEGIN TEST unproj.R 185s 185s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 185s Copyright (C) 2025 The R Foundation for Statistical Computing 185s Platform: x86_64-pc-linux-gnu 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 185s > # DOI 10.1007/s11004-011-9344-7 185s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 185s > 185s > suppressPackageStartupMessages(library(sp)) 185s > library(gstat) 185s > 185s > if (require(sp, quietly = TRUE) && 185s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 185s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 185s + data(meuse) 185s + coordinates(meuse) = ~x+y 185s + proj4string(meuse) = CRS("+init=epsg:28992") 185s + ll = "+proj=longlat +ellps=WGS84" 185s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 185s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 185s + meuse.ll[1:10,] 185s + variogram(log(zinc)~1, meuse.ll) 185s + 185s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 185s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 185s + 185s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 185s + abline(0,1) 185s + 185s + data(ozone2) 185s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 185s + data.frame(t(ozone2$y)), 185s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 185s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 185s + utm16 = "+proj=utm +zone=16" 185s + # oz.utm = spTransform(oz, utm16) 185s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 185s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 185s + 185s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 185s + 186s + foo <- 186s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 186s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 186s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 186s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 186s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 186s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 186s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 186s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 186s + -11L), class = "data.frame") 186s + 186s + coordinates(foo) <- ~lon+lat 186s + 186s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 186s + 186s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 186s + 186s + cat('==========\nvariogram:\n') 186s + print(head(vg.foo)) 186s + 186s + cat('==========\nspDistsN1 Distances:\n') 186s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 186s + } 186s ========== 186s variogram: 186s dist gamma dir.hor dir.ver id left right 186s 1 3115.1190 8.971063e-04 0 0 var1 2 1 186s 2 1908.0468 1.909846e+01 0 0 var1 3 1 186s 3 1405.6211 1.883757e+01 0 0 var1 3 2 186s 4 1837.5667 1.347749e+01 0 0 var1 4 1 186s 5 1522.8765 1.325847e+01 0 0 var1 4 2 186s 6 119.9386 4.886139e-01 0 0 var1 4 3 186s ========== 186s spDistsN1 Distances: 186s [1] 0.0000 3115.1190 1908.0468Warning message: 186s In CPL_crs_from_input(x) : 186s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Further messages of this type will be suppressed. 186s 1837.5667 1481.6293 3775.6751 1480.4477 186s [8] 3081.7541 4090.4022 665.9348 2683.1516 186s > 186s BEGIN TEST variogram.R 186s 186s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 186s Copyright (C) 2025 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > library(sp) 187s > library(gstat) 187s > data(meuse) 187s > variogram(log(zinc)~1, ~x+y, meuse) 187s np dist gamma dir.hor dir.ver id 187s 1 57 79.29244 0.1234479 0 0 var1 187s 2 299 163.97367 0.2162185 0 0 var1 187s 3 419 267.36483 0.3027859 0 0 var1 187s 4 457 372.73542 0.4121448 0 0 var1 187s 5 547 478.47670 0.4634128 0 0 var1 187s 6 533 585.34058 0.5646933 0 0 var1 187s 7 574 693.14526 0.5689683 0 0 var1 187s 8 564 796.18365 0.6186769 0 0 var1 187s 9 589 903.14650 0.6471479 0 0 var1 187s 10 543 1011.29177 0.6915705 0 0 var1 187s 11 500 1117.86235 0.7033984 0 0 var1 187s 12 477 1221.32810 0.6038770 0 0 var1 187s 13 452 1329.16407 0.6517158 0 0 var1 187s 14 457 1437.25620 0.5665318 0 0 var1 187s 15 415 1543.20248 0.5748227 0 0 var1 187s > 187s > coordinates(meuse) <- ~ x + y 187s > variogram(log(zinc)~1, meuse) 187s np dist gamma dir.hor dir.ver id 187s 1 57 79.29244 0.1234479 0 0 var1 187s 2 299 163.97367 0.2162185 0 0 var1 187s 3 419 267.36483 0.3027859 0 0 var1 187s 4 457 372.73542 0.4121448 0 0 var1 187s 5 547 478.47670 0.4634128 0 0 var1 187s 6 533 585.34058 0.5646933 0 0 var1 187s 7 574 693.14526 0.5689683 0 0 var1 187s 8 564 796.18365 0.6186769 0 0 var1 187s 9 589 903.14650 0.6471479 0 0 var1 187s 10 543 1011.29177 0.6915705 0 0 var1 187s 11 500 1117.86235 0.7033984 0 0 var1 187s 12 477 1221.32810 0.6038770 0 0 var1 187s 13 452 1329.16407 0.6517158 0 0 var1 187s 14 457 1437.25620 0.5665318 0 0 var1 187s 15 415 1543.20248 0.5748227 0 0 var1 187s > 187s > ind=seq(1,155,2) 187s > var1= meuse[ind,] 187s > var2= meuse[-ind,] 187s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 187s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 187s > v.cross <- variogram(g) 187s > plot(v.cross) 187s > 187s > 187s BEGIN TEST vdist.R 187s 187s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 187s Copyright (C) 2025 The R Foundation for Statistical Computing 187s Platform: x86_64-pc-linux-gnu 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 187s > library(sp) 187s > library(gstat) 187s > 187s > data(meuse) 187s > coordinates(meuse) = ~x+y 187s > data(meuse.grid) 187s > gridded(meuse.grid) = ~x+y 187s > 187s > mg = meuse.grid 187s > gridded(mg) = FALSE 187s > mg= mg[1500,] 187s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 187s + vdist=FALSE, maxdist=1000, nmax = 9) 187s [using ordinary kriging] 187s coordinates var1.pred var1.var 187s 1500 (180260, 331300) 5.024413 1.114475 187s > 187s > ## IGNORE_RDIFF_BEGIN 187s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 187s + vdist=TRUE, maxdist=1000, nmax = 9) 187s [using ordinary kriging] 187s coordinates var1.pred var1.var 187s 1500 (180260, 331300) 5.568531 1.112945 187s > ## IGNORE_RDIFF_END 187s > 188s autopkgtest [03:07:20]: test run-unit-test: -----------------------] 188s autopkgtest [03:07:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 188s run-unit-test PASS 188s autopkgtest [03:07:20]: test pkg-r-autopkgtest: preparing testbed 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Solving dependencies... 189s The following NEW packages will be installed: 189s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 189s dctrl-tools g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 189s gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 189s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 189s libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 189s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 189s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 189s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 189s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0 189s libreadline-dev libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev 189s linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto 189s zlib1g-dev 189s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 112 MB of archives. 189s After this operation, 402 MB of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 189s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 189s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 189s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 189s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 189s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 189s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 189s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 190s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 190s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 190s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 190s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 190s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 190s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 190s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 190s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 190s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 190s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 190s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 190s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 190s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 190s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 190s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 190s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 190s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 191s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 191s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 191s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 191s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 191s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 191s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 191s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 191s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 191s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 191s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 191s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 191s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 191s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 191s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 191s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 191s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 191s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 191s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 191s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 191s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 191s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 191s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 191s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 191s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 191s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 191s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 191s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 191s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 191s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 191s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 191s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 191s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 191s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 191s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 191s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 191s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 192s Fetched 112 MB in 2s (45.3 MB/s) 192s Selecting previously unselected package libc-dev-bin. 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 134571 files and directories currently installed.) 192s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 192s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 192s Selecting previously unselected package linux-libc-dev:amd64. 192s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_amd64.deb ... 192s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 192s Selecting previously unselected package libcrypt-dev:amd64. 192s Preparing to unpack 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(15.2.0-12ubuntu1) ... 192s Selecting previously unselected package cpp-15. 192s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 192s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 192s Selecting previously unselected package cpp-x86-64-linux-gnu. 192s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 192s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 192s Selecting previously unselected package cpp. 192s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 192s Unpacking cpp (4:15.2.0-4ubuntu1) ... 192s Selecting previously unselected package libcc1-0:amd64. 192s Preparing to unpack .../11-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package libitm1:amd64. 192s Preparing to unpack .../12-libitm1_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package libasan8:amd64. 192s Preparing to unpack .../13-libasan8_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package liblsan0:amd64. 192s Preparing to unpack .../14-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package libtsan2:amd64. 192s Preparing to unpack .../15-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package libubsan1:amd64. 192s Preparing to unpack .../16-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package libhwasan0:amd64. 192s Preparing to unpack .../17-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 192s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 192s Selecting previously unselected package libquadmath0:amd64. 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.../28-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 193s Unpacking g++ (4:15.2.0-4ubuntu1) ... 193s Selecting previously unselected package build-essential. 193s Preparing to unpack .../29-build-essential_12.12ubuntu2_amd64.deb ... 193s Unpacking build-essential (12.12ubuntu2) ... 193s Selecting previously unselected package dctrl-tools. 193s Preparing to unpack .../30-dctrl-tools_2.24-3build4_amd64.deb ... 193s Unpacking dctrl-tools (2.24-3build4) ... 193s Selecting previously unselected package libgfortran-15-dev:amd64. 193s Preparing to unpack .../31-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 193s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 193s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 193s Preparing to unpack .../32-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 193s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 193s Selecting previously unselected package gfortran-15. 193s Preparing to unpack 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doesn't exist 194s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 194s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 194s Setting up g++ (4:15.2.0-4ubuntu1) ... 194s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 194s Setting up build-essential (12.12ubuntu2) ... 194s Setting up r-base-dev (4.5.2-1ubuntu2) ... 194s Setting up pkg-r-autopkgtest (20250812) ... 194s Processing triggers for libc-bin (2.42-2ubuntu4) ... 194s Processing triggers for man-db (2.13.1-1build1) ... 195s Processing triggers for install-info (7.2-5) ... 195s autopkgtest [03:07:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 195s autopkgtest [03:07:27]: test pkg-r-autopkgtest: [----------------------- 195s Test: Try to load the R library gstat 196s 196s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 196s Copyright (C) 2025 The R Foundation for Statistical Computing 196s Platform: x86_64-pc-linux-gnu 196s 196s R is free software and comes with ABSOLUTELY NO WARRANTY. 196s You are welcome to redistribute it under certain conditions. 196s Type 'license()' or 'licence()' for distribution details. 196s 196s R is a collaborative project with many contributors. 196s Type 'contributors()' for more information and 196s 'citation()' on how to cite R or R packages in publications. 196s 196s Type 'demo()' for some demos, 'help()' for on-line help, or 196s 'help.start()' for an HTML browser interface to help. 196s Type 'q()' to quit R. 196s 196s > library('gstat') 196s > 196s autopkgtest [03:07:28]: test pkg-r-autopkgtest: -----------------------] 197s autopkgtest [03:07:29]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 197s pkg-r-autopkgtest PASS 197s autopkgtest [03:07:29]: @@@@@@@@@@@@@@@@@@@@ summary 197s run-unit-test PASS 197s pkg-r-autopkgtest PASS