0s autopkgtest [01:45:07]: starting date and time: 2026-02-10 01:45:07+0000 0s autopkgtest [01:45:07]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [01:45:07]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wxpd0a6a/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-adegraphics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-9.secgroup --name adt-resolute-amd64-r-cran-adegraphics-20260210-014507-juju-7f2275-prod-proposed-migration-environment-15-e729f4ef-d5e2-45ac-9b38-dec76e7ed352 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-r-cran-adegraphics-20260210-014507-juju-7f2275-prod-proposed-migration-environment-15-e729f4ef-d5e2-45ac-9b38-dec76e7ed352 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 73s autopkgtest [01:46:20]: testbed dpkg architecture: amd64 73s autopkgtest [01:46:20]: testbed apt version: 3.1.14 74s autopkgtest [01:46:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s autopkgtest [01:46:21]: testbed release detected to be: None 74s autopkgtest [01:46:21]: updating testbed package index (apt update) 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [173 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1637 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [253 kB] 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [201 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5996 B] 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [316 B] 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [639 kB] 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1584 kB] 76s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [33.3 kB] 76s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4320 B] 76s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [25.2 kB] 76s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 76s Fetched 4710 kB in 1s (6089 kB/s) 77s Reading package lists... 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 79s The following package was automatically installed and is no longer required: 79s libpython3.13 79s Use 'sudo apt autoremove' to remove it. 79s The following NEW packages will be installed: 79s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 79s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 79s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 79s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 79s The following packages will be upgraded: 79s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 79s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 79s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 79s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 79s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 79s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 79s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 79s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 79s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 79s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 79s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 79s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 79s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 79s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 79s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 79s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 79s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 237 MB of archives. 79s After this operation, 339 MB of additional disk space will be used. 79s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 79s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 79s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 79s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 79s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 79s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 79s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 79s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 79s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 79s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 79s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 79s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 79s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 79s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 79s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 79s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 79s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 79s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 79s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 79s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 79s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 79s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 79s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 79s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 79s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 79s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 79s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 79s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 79s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 79s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 79s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 79s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 79s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 79s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 79s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 79s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 79s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 79s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 79s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 79s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 79s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 79s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 79s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 79s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 79s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 79s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 79s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 79s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 79s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 79s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 79s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 79s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 79s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 80s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 80s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 80s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 80s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 82s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 82s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 82s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 82s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 82s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 82s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 82s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 82s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 82s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 82s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 82s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 83s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 83s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 83s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 83s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 83s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 83s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 83s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 83s dpkg-preconfigure: unable to re-open stdin: No such file or directory 83s Fetched 237 MB in 4s (61.3 MB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 83s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 83s Setting up debianutils (5.23.2build1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 83s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 83s Setting up dash (0.5.12-12ubuntu3) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 83s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 83s Setting up findutils (4.10.0-3build2) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 84s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 84s Setting up sed (4.9-2build3) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 84s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 84s Setting up tar (1.35+dfsg-3.1build2) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 84s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 84s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 84s Selecting previously unselected package gcc-16-base:amd64. 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 84s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 84s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 84s (Reading database ... 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(7.7.0+6.19.0-3.3) ... 92s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 92s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 92s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 92s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 92s Setting up libsensors-config (1:3.6.2-2build1) ... 92s Setting up less (668-1build1) ... 92s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 92s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 92s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 92s amd64-microcode: microcode will be updated at next boot 92s Setting up man-db (2.13.1-1build1) ... 92s Updating database of manual pages ... 94s man-db.service is a disabled or a static unit not running, not starting it. 94s Setting up libjansson4:amd64 (2.14-2build4) ... 94s Setting up libglib2.0-data (2.87.2-2) ... 94s Setting up pollinate (4.33-4ubuntu5) ... 106s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 106s Setting up libwrap0:amd64 (7.6.q-36build2) ... 106s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 106s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 106s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 106s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 106s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 106s Setting up patch (2.8-2build1) ... 106s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 106s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 106s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 106s Setting up lsof (4.99.4+dfsg-2build2) ... 106s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 106s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 106s Setting up dracut-install (109-11ubuntu1) ... 106s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 106s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 106s Setting up pnp.ids (0.394-1build1) ... 106s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 106s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 106s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 106s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 106s Setting up mawk (1.3.4.20260129-1) ... 106s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 106s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 106s Setting up linux-image-virtual (6.19.0-3.3) ... 106s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 106s Setting up libbsd0:amd64 (0.12.2-2build2) ... 106s Setting up libdrm-common (2.4.131-1) ... 106s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 106s Setting up dbus-bin (1.16.2-2ubuntu3) ... 106s Setting up libonig5:amd64 (6.9.10-1build1) ... 106s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 106s Setting up ethtool (1:6.15-3build1) ... 106s Setting up python3-referencing (0.36.2-1ubuntu2) ... 106s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 106s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 106s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 106s Setting up tcpdump (4.99.5-2ubuntu3) ... 106s Setting up linux-image-generic (6.19.0-3.3) ... 106s Setting up wget (1.25.0-2ubuntu4) ... 106s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 106s Setting up iptables (1.8.11-2ubuntu3) ... 106s Setting up iproute2 (6.18.0-1ubuntu1) ... 106s Setting up linux-headers-generic (6.19.0-3.3) ... 106s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 106s Setting up hwdata (0.394-1build1) ... 106s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 106s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 106s No schema files found: doing nothing. 106s Setting up dbus (1.16.2-2ubuntu3) ... 106s A reboot is required to replace the running dbus-daemon. 106s Please reboot the system when convenient. 107s Setting up shared-mime-info (2.4-5build3) ... 108s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 108s Setting up pciutils (1:3.14.0-1build2) ... 108s Setting up python3-markdown-it (3.0.0-3build1) ... 108s Setting up libdrm2:amd64 (2.4.131-1) ... 108s Setting up libpython3.14:amd64 (3.14.2-1) ... 108s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 108s Setting up linux-tools-common (6.19.0-3.3) ... 108s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 108s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 108s Setting up apt (3.1.15) ... 108s Setting up linux-headers-virtual (6.19.0-3.3) ... 108s Setting up linux-generic (6.19.0-3.3) ... 108s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 108s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 108s Setting up ubuntu-standard (1.564) ... 108s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 108s Setting up linux-virtual (6.19.0-3.3) ... 108s Setting up linux-perf (6.19.0-3.3) ... 108s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 108s Processing triggers for debianutils (5.23.2build1) ... 108s Processing triggers for install-info (7.2-5) ... 108s Processing triggers for initramfs-tools (0.150ubuntu7) ... 108s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 113s Processing triggers for libc-bin (2.42-2ubuntu4) ... 113s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 113s /etc/kernel/postinst.d/initramfs-tools: 113s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 118s /etc/kernel/postinst.d/zz-update-grub: 118s Sourcing file `/etc/default/grub' 118s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 118s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 118s Generating grub configuration file ... 118s Found linux image: /boot/vmlinuz-6.19.0-3-generic 118s Found initrd image: /boot/initrd.img-6.19.0-3-generic 118s Found linux image: /boot/vmlinuz-6.18.0-9-generic 118s Found initrd image: /boot/initrd.img-6.18.0-9-generic 118s Warning: os-prober will not be executed to detect other bootable partitions. 118s Systems on them will not be added to the GRUB boot configuration. 118s Check GRUB_DISABLE_OS_PROBER documentation entry. 118s Adding boot menu entry for UEFI Firmware Settings ... 118s done 118s autopkgtest [01:47:05]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s The following package was automatically installed and is no longer required: 119s libpython3.13 119s Use 'sudo apt autoremove' to remove it. 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 120s The following packages will be REMOVED: 120s libpython3.13* 120s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 120s After this operation, 7599 kB disk space will be freed. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 120s Removing libpython3.13:amd64 (3.13.11-1) ... 120s Processing triggers for libc-bin (2.42-2ubuntu4) ... 120s autopkgtest [01:47:07]: rebooting testbed after setup commands that affected boot 150s autopkgtest [01:47:37]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 152s autopkgtest [01:47:39]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegraphics 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (dsc) [2404 B] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (tar) [2847 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (diff) [3500 B] 154s gpgv: Signature made Thu Dec 11 02:52:52 2025 UTC 154s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 154s gpgv: issuer "plessy@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegraphics_1.0-22-1.dsc: no acceptable signature found 154s autopkgtest [01:47:41]: testing package r-cran-adegraphics version 1.0-22-1 155s autopkgtest [01:47:42]: build not needed 158s autopkgtest [01:47:45]: test run-unit-test: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 159s The following NEW packages will be installed: 159s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 159s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 159s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 159s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 159s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 159s libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 159s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 159s libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 159s libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8 159s libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 159s libjs-highlight.js libjs-jquery libjs-jquery-datatables 159s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 159s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 159s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 159s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 159s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 159s libnlopt0 libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 159s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 159s libpoppler147 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 159s libsnappy1v5 libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data 159s libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 159s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 159s libxss1 libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 159s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 159s r-cran-ade4 r-cran-adegraphics r-cran-backports r-cran-base64enc r-cran-boot 159s r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata 159s r-cran-caret r-cran-class r-cran-classint r-cran-cli r-cran-clock 159s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-conquer 159s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 159s r-cran-dbi r-cran-deldir r-cran-deriv r-cran-diagram r-cran-digest 159s r-cran-doby r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi 159s r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-foreach 159s r-cran-forecast r-cran-formula r-cran-fracdiff r-cran-fs r-cran-future 159s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 159s r-cran-glue r-cran-gower r-cran-gtable r-cran-guerry r-cran-hardhat 159s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-interp r-cran-ipred 159s r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 159s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 159s r-cran-latticeextra r-cran-lava r-cran-lifecycle r-cran-listenv 159s r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-lubridate r-cran-magrittr 159s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels 159s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark 159s r-cran-mime r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-nlme 159s r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pbkrtest 159s r-cran-pillar r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 159s r-cran-png r-cran-proc r-cran-prodlim r-cran-progressr r-cran-promises 159s r-cran-proxy r-cran-purrr r-cran-quadprog r-cran-quantmod r-cran-quantreg 159s r-cran-r6 r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 159s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-recipes 159s r-cran-reformulas r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rpart 159s r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shape r-cran-shiny 159s r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-sparsevctrs r-cran-spdata 159s r-cran-spdep r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr 159s r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect 159s r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tseries r-cran-ttr 159s r-cran-tzdb r-cran-units r-cran-urca r-cran-utf8 r-cran-vctrs 159s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable 159s r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common unzip x11-common xdg-utils 159s zip 159s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 268 MB of archives. 159s After this operation, 746 MB of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 159s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 159s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 159s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 159s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 159s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 159s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 159s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 159s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 159s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB] 159s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 159s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 159s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 159s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 160s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 160s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 160s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 160s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 160s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 160s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 160s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 160s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 160s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 160s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 160s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 160s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 160s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 160s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 160s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 160s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 160s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 160s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 160s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 160s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 160s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 160s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 160s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 160s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 160s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 160s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 160s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 160s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 160s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 160s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 160s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 160s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 160s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 160s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB] 160s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 160s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 160s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 160s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 160s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 160s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 160s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 160s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 160s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 160s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 160s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 160s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 160s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 160s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 160s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 160s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 160s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 161s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 161s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 161s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 161s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 161s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 161s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 161s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 161s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 161s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 161s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 161s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 161s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 161s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4build1 [189 kB] 161s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 161s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 161s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 161s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 161s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 161s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 161s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 161s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 161s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 161s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 161s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 161s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 161s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 161s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 161s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 161s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 161s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 161s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 161s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 161s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 161s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 161s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 161s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 161s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 161s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 161s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 161s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 161s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 161s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 161s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 161s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 161s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 161s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 161s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 161s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 161s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 161s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 161s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 161s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 161s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 161s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 161s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 162s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 162s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 162s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 162s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 162s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 162s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 162s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pixmap all 0.4-14-1 [217 kB] 162s Get:130 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB] 163s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 163s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 163s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 163s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 163s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB] 163s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ade4 amd64 1.7-23-1 [5414 kB] 163s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 163s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 163s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 163s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 163s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 163s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 163s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 163s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 163s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-latticeextra all 0.6-31-1 [2177 kB] 164s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-adegraphics all 1.0-22-1 [3298 kB] 164s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 164s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 164s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-boot all 1.3-32-1 [636 kB] 164s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 164s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 164s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 164s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 164s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 164s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 164s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 164s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 164s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 164s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 164s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 164s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 164s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 164s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 164s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 164s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 164s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 164s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 164s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 164s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 164s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 164s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-broom all 1.0.12+dfsg-1 [1708 kB] 164s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 164s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 164s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 164s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 164s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 164s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 164s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 164s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 164s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 164s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 164s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 164s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 165s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cardata all 3.0.6-1 [1687 kB] 165s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 165s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 165s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 165s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 165s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-minqa amd64 1.2.8-1 [119 kB] 165s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnlopt0 amd64 2.7.1-7ubuntu1 [189 kB] 165s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nloptr amd64 2.2.1-2 [251 kB] 165s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 165s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 165s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reformulas all 0.4.4-1 [151 kB] 165s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 165s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lme4 amd64 1.1-38-1 [4197 kB] 165s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-numderiv all 2016.8-1.1-3build1 [116 kB] 165s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 165s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 165s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 165s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 165s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 166s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 166s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 166s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 166s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deriv all 4.2.0-1 [154 kB] 166s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 166s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fracdiff amd64 1.5-3-1 [108 kB] 166s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 166s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 166s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-timedate amd64 4052.112-1 [1298 kB] 166s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-quadprog amd64 1.5-8-1build2 [32.6 kB] 166s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 166s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 166s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ttr amd64 0.24.4-1 [511 kB] 166s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-quantmod all 0.4.28-1 [1037 kB] 166s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tseries amd64 0.10-59-3 [382 kB] 166s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-urca amd64 1.3-4-1build1 [1052 kB] 166s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-forecast amd64 8.23.0-1 [1569 kB] 166s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-modelr all 0.1.11-1 [195 kB] 166s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-microbenchmark amd64 1.5.0-1 [67.4 kB] 166s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-doby all 4.7.1-3 [4741 kB] 167s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 167s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 167s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 167s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 167s Get:227 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 167s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 167s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbkrtest all 0.5.5-1 [217 kB] 167s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 167s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixmodels all 0.5-4-1 [351 kB] 167s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 167s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 168s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 168s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 168s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 168s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 168s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-iterators all 1.0.14-1build1 [336 kB] 168s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreach all 1.5.2-1build1 [124 kB] 168s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 168s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build2 [155 kB] 168s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 168s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 168s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tzdb amd64 0.5.0-1 [538 kB] 168s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clock amd64 0.7.2-1 [1903 kB] 168s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gower amd64 1.0.2-1 [210 kB] 168s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sparsevctrs amd64 0.2.0-2 [170 kB] 168s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hardhat all 1.4.2+dfsg-1 [596 kB] 168s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB] 168s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 168s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 168s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.19.0-1 [160 kB] 168s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 168s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 168s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 168s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 168s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progressr all 0.15.1-1 [353 kB] 168s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-squarem all 2021.1-1build1 [180 kB] 168s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lava all 1.8.2+dfsg-1 [2210 kB] 168s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 168s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 168s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-timechange amd64 0.3.0-2 [201 kB] 168s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lubridate amd64 1.9.4+dfsg-1 [1009 kB] 168s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 168s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB] 169s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-caret amd64 7.0-1+dfsg-1 [3460 kB] 169s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 169s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-quantreg amd64 6.1-1 [1455 kB] 169s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-car all 3.1-5-1 [1526 kB] 169s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 169s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 169s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 169s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 169s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 169s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-guerry all 1.8.3-1 [1230 kB] 169s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 169s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 169s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 169s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-markdown all 1.13-1 [162 kB] 169s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 169s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 169s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 169s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 169s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 169s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 169s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 169s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 169s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 170s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 170s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 170s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spdata all 2.3.4-1 [3684 kB] 170s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spdep amd64 1.3-5+dfsg-1 [2167 kB] 170s Preconfiguring packages ... 170s Fetched 268 MB in 11s (24.1 MB/s) 170s Selecting previously unselected package fonts-dejavu-mono. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 171s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 171s Unpacking fonts-dejavu-mono (2.37-8build1) ... 171s Selecting previously unselected package fonts-dejavu-core. 171s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 171s Unpacking fonts-dejavu-core (2.37-8build1) ... 171s Selecting previously unselected package fontconfig-config. 171s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 171s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 171s Selecting previously unselected package libfontconfig1:amd64. 171s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 171s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 171s Selecting previously unselected package fontconfig. 171s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 171s Unpacking fontconfig (2.17.1-3ubuntu1) ... 171s Selecting previously unselected package fonts-font-awesome. 171s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 171s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 171s Selecting previously unselected package fonts-glyphicons-halflings. 171s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 171s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 171s Selecting previously unselected package fonts-mathjax. 171s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 171s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 171s Selecting previously unselected package gdal-data. 171s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ... 171s Unpacking gdal-data (3.12.1+dfsg-1) ... 171s Selecting previously unselected package gdal-plugins:amd64. 171s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 171s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 171s Selecting previously unselected package javascript-common. 171s Preparing to unpack .../010-javascript-common_12+nmu1build1_all.deb ... 171s Unpacking javascript-common (12+nmu1build1) ... 171s Selecting previously unselected package libabsl20260107:amd64. 171s Preparing to unpack .../011-libabsl20260107_20260107.0-1_amd64.deb ... 171s Unpacking libabsl20260107:amd64 (20260107.0-1) ... 171s Selecting previously unselected package libaec0:amd64. 171s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ... 171s Unpacking libaec0:amd64 (1.1.5-1) ... 171s Selecting previously unselected package libaom3:amd64. 171s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ... 171s Unpacking libaom3:amd64 (3.13.1-2) ... 171s Selecting previously unselected package libblas3:amd64. 171s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ... 171s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 171s Selecting previously unselected package libgfortran5:amd64. 171s Preparing to unpack .../015-libgfortran5_16-20260208-1ubuntu1_amd64.deb ... 171s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ... 171s Selecting previously unselected package liblapack3:amd64. 171s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 171s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 171s Selecting previously unselected package libarpack2t64:amd64. 171s Preparing to unpack .../017-libarpack2t64_3.9.1-6_amd64.deb ... 171s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 171s Selecting previously unselected package libsuperlu7:amd64. 171s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 171s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 171s Selecting previously unselected package libarmadillo15. 171s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 171s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 171s Selecting previously unselected package libdav1d7:amd64. 171s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ... 171s Unpacking libdav1d7:amd64 (1.5.3-1) ... 171s Selecting previously unselected package libgav1-2:amd64. 171s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ... 171s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 171s Selecting previously unselected package libjpeg-turbo8:amd64. 171s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 171s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 171s Selecting previously unselected package libjpeg8:amd64. 171s Preparing to unpack .../023-libjpeg8_8c-2ubuntu12_amd64.deb ... 171s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 171s Selecting previously unselected package libyuv0:amd64. 171s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ... 171s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 171s Selecting previously unselected package libavif16:amd64. 171s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ... 171s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 171s Selecting previously unselected package libsnappy1v5:amd64. 171s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ... 171s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 171s Selecting previously unselected package libblosc1:amd64. 171s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ... 171s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 171s Selecting previously unselected package libpixman-1-0:amd64. 171s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ... 171s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 171s Selecting previously unselected package libxcb-render0:amd64. 171s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 171s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 171s Selecting previously unselected package libxcb-shm0:amd64. 171s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 171s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 171s Selecting previously unselected package libxrender1:amd64. 171s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_amd64.deb ... 171s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 171s Selecting previously unselected package libcairo2:amd64. 171s Preparing to unpack .../032-libcairo2_1.18.4-3_amd64.deb ... 171s Unpacking libcairo2:amd64 (1.18.4-3) ... 171s Selecting previously unselected package libcfitsio10t64:amd64. 171s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_amd64.deb ... 171s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 171s Selecting previously unselected package libdatrie1:amd64. 171s Preparing to unpack .../034-libdatrie1_0.2.14-1_amd64.deb ... 171s Unpacking libdatrie1:amd64 (0.2.14-1) ... 172s Selecting previously unselected package libde265-0:amd64. 172s Preparing to unpack .../035-libde265-0_1.0.16-1build1_amd64.deb ... 172s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 172s Selecting previously unselected package libdeflate0:amd64. 172s Preparing to unpack .../036-libdeflate0_1.23-2build1_amd64.deb ... 172s Unpacking libdeflate0:amd64 (1.23-2build1) ... 172s Selecting previously unselected package libfyba0t64:amd64. 172s Preparing to unpack .../037-libfyba0t64_4.1.1-11build2_amd64.deb ... 172s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 172s Selecting previously unselected package libminizip1t64:amd64. 172s Preparing to unpack .../038-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 172s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 172s Selecting previously unselected package libfreexl1:amd64. 172s Preparing to unpack .../039-libfreexl1_2.0.0-1build3_amd64.deb ... 172s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 172s Selecting previously unselected package libgeos3.14.1:amd64. 172s Preparing to unpack .../040-libgeos3.14.1_3.14.1-2_amd64.deb ... 172s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 172s Selecting previously unselected package libgeos-c1t64:amd64. 172s Preparing to unpack .../041-libgeos-c1t64_3.14.1-2_amd64.deb ... 172s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 172s Selecting previously unselected package proj-data. 172s Preparing to unpack .../042-proj-data_9.7.1-1_all.deb ... 172s Unpacking proj-data (9.7.1-1) ... 172s Selecting previously unselected package libjbig0:amd64. 172s Preparing to unpack .../043-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 172s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 172s Selecting previously unselected package liblerc4:amd64. 172s Preparing to unpack .../044-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 172s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 172s Selecting previously unselected package libsharpyuv0:amd64. 172s Preparing to unpack .../045-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 172s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 172s Selecting previously unselected package libwebp7:amd64. 172s Preparing to unpack .../046-libwebp7_1.5.0-0.1build1_amd64.deb ... 172s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 172s Selecting previously unselected package libtiff6:amd64. 172s Preparing to unpack .../047-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 172s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 172s Selecting previously unselected package libproj25:amd64. 172s Preparing to unpack .../048-libproj25_9.7.1-1_amd64.deb ... 172s Unpacking libproj25:amd64 (9.7.1-1) ... 172s Selecting previously unselected package libgeotiff5:amd64. 172s Preparing to unpack .../049-libgeotiff5_1.7.4-1build1_amd64.deb 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previously unselected package libheif-plugin-libde265:amd64. 172s Preparing to unpack .../055-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 172s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 172s Selecting previously unselected package libheif1:amd64. 172s Preparing to unpack .../056-libheif1_1.21.2-1_amd64.deb ... 172s Unpacking libheif1:amd64 (1.21.2-1) ... 172s Selecting previously unselected package libhwy1t64:amd64. 172s Preparing to unpack .../057-libhwy1t64_1.3.0-2_amd64.deb ... 172s Unpacking libhwy1t64:amd64 (1.3.0-2) ... 172s Selecting previously unselected package liblcms2-2:amd64. 172s Preparing to unpack .../058-liblcms2-2_2.17-1_amd64.deb ... 172s Unpacking liblcms2-2:amd64 (2.17-1) ... 172s Selecting previously unselected package libjxl0.11:amd64. 172s Preparing to unpack .../059-libjxl0.11_0.11.1-6ubuntu1_amd64.deb ... 172s Unpacking libjxl0.11:amd64 (0.11.1-6ubuntu1) ... 172s Selecting previously unselected package liburiparser1:amd64. 172s Preparing to unpack .../060-liburiparser1_0.9.8+dfsg-2_amd64.deb ... 172s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2) ... 172s Selecting previously unselected package libkmlbase1t64:amd64. 172s Preparing to unpack .../061-libkmlbase1t64_1.3.0-13_amd64.deb ... 172s Unpacking libkmlbase1t64:amd64 (1.3.0-13) ... 172s Selecting previously unselected package libkmldom1t64:amd64. 172s Preparing to unpack .../062-libkmldom1t64_1.3.0-13_amd64.deb ... 172s Unpacking libkmldom1t64:amd64 (1.3.0-13) ... 172s Selecting previously unselected package libkmlengine1t64:amd64. 172s Preparing to unpack .../063-libkmlengine1t64_1.3.0-13_amd64.deb ... 172s Unpacking libkmlengine1t64:amd64 (1.3.0-13) ... 172s Selecting previously unselected package libgomp1:amd64. 172s Preparing to unpack .../064-libgomp1_16-20260208-1ubuntu1_amd64.deb ... 172s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ... 172s Selecting previously unselected package libmuparser2v5:amd64. 172s Preparing to unpack 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.../070-libltdl7_2.5.4-9_amd64.deb ... 172s Unpacking libltdl7:amd64 (2.5.4-9) ... 172s Selecting previously unselected package libodbc2:amd64. 172s Preparing to unpack .../071-libodbc2_2.3.14-1_amd64.deb ... 172s Unpacking libodbc2:amd64 (2.3.14-1) ... 172s Selecting previously unselected package unixodbc-common. 172s Preparing to unpack .../072-unixodbc-common_2.3.14-1_all.deb ... 172s Unpacking unixodbc-common (2.3.14-1) ... 172s Selecting previously unselected package libodbcinst2:amd64. 172s Preparing to unpack .../073-libodbcinst2_2.3.14-1_amd64.deb ... 172s Unpacking libodbcinst2:amd64 (2.3.14-1) ... 172s Selecting previously unselected package libopenjp2-7:amd64. 172s Preparing to unpack .../074-libopenjp2-7_2.5.4-1_amd64.deb ... 172s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 172s Selecting previously unselected package libgpgmepp6t64:amd64. 172s Preparing to unpack .../075-libgpgmepp6t64_1.24.2-3ubuntu2_amd64.deb ... 172s Unpacking libgpgmepp6t64:amd64 (1.24.2-3ubuntu2) ... 172s Selecting previously unselected package libpoppler147:amd64. 172s Preparing to unpack .../076-libpoppler147_25.03.0-11.1_amd64.deb ... 172s Unpacking libpoppler147:amd64 (25.03.0-11.1) ... 172s Selecting previously unselected package libpq5:amd64. 172s Preparing to unpack .../077-libpq5_18.1-2_amd64.deb ... 172s Unpacking libpq5:amd64 (18.1-2) ... 172s Selecting previously unselected package libqhull-r8.0:amd64. 172s Preparing to unpack .../078-libqhull-r8.0_2020.2-8_amd64.deb ... 172s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 172s Selecting previously unselected package librttopo1:amd64. 172s Preparing to unpack .../079-librttopo1_1.1.0-4build1_amd64.deb ... 172s Unpacking librttopo1:amd64 (1.1.0-4build1) ... 172s Selecting previously unselected package libspatialite8t64:amd64. 172s Preparing to unpack .../080-libspatialite8t64_5.1.0-3ubuntu1_amd64.deb ... 172s Unpacking libspatialite8t64:amd64 (5.1.0-3ubuntu1) ... 172s Selecting previously unselected package libxerces-c3.2t64:amd64. 172s Preparing to unpack .../081-libxerces-c3.2t64_3.2.4+debian-1.3build2_amd64.deb ... 172s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build2) ... 172s Selecting previously unselected package libgdal38:amd64. 172s Preparing to unpack .../082-libgdal38_3.12.1+dfsg-1_amd64.deb ... 172s Unpacking libgdal38:amd64 (3.12.1+dfsg-1) ... 173s Selecting previously unselected package libgraphite2-3:amd64. 173s Preparing to unpack .../083-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 173s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 173s Selecting previously unselected package libharfbuzz0b:amd64. 173s Preparing to unpack .../084-libharfbuzz0b_12.3.2-1_amd64.deb ... 173s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 173s Selecting previously unselected package x11-common. 173s Preparing to unpack .../085-x11-common_1%3a7.7+24ubuntu1_all.deb ... 173s Unpacking x11-common (1:7.7+24ubuntu1) ... 173s Selecting previously unselected package libice6:amd64. 173s 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173s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 173s Selecting previously unselected package libjs-jquery-selectize.js. 173s Preparing to unpack .../097-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 173s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 173s Selecting previously unselected package libjs-jquery-ui. 173s Preparing to unpack .../098-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 173s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 173s Selecting previously unselected package libjs-json. 173s Preparing to unpack .../099-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 173s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 173s Selecting previously unselected package libjs-prettify. 173s Preparing to unpack .../100-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 173s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 173s Selecting previously unselected package liblua5.4-0:amd64. 173s Preparing to unpack .../101-liblua5.4-0_5.4.8-1_amd64.deb ... 173s Unpacking liblua5.4-0:amd64 (5.4.8-1) ... 173s Selecting previously unselected package libthai-data. 173s Preparing to unpack .../102-libthai-data_0.1.30-1_all.deb ... 173s Unpacking libthai-data (0.1.30-1) ... 173s Selecting previously unselected package libthai0:amd64. 173s Preparing to unpack .../103-libthai0_0.1.30-1_amd64.deb ... 173s Unpacking libthai0:amd64 (0.1.30-1) ... 173s Selecting previously unselected package libpango-1.0-0:amd64. 173s Preparing to unpack .../104-libpango-1.0-0_1.57.0-1_amd64.deb ... 173s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ... 173s Selecting previously unselected package libpangoft2-1.0-0:amd64. 173s Preparing to unpack .../105-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 173s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 173s Selecting previously unselected package libpangocairo-1.0-0:amd64. 173s Preparing to unpack .../106-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 173s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 173s Selecting previously unselected package libpaper2:amd64. 173s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_amd64.deb ... 173s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 173s Selecting previously unselected package libpaper-utils. 173s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 173s Unpacking libpaper-utils (2.2.5-0.3build1) ... 173s Selecting previously unselected package libsm6:amd64. 173s Preparing to unpack .../109-libsm6_2%3a1.2.6-1build1_amd64.deb ... 173s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 173s Selecting previously unselected package libtcl8.6:amd64. 173s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 173s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 173s Selecting previously unselected package libxft2:amd64. 173s Preparing to unpack .../111-libxft2_2.3.6-1build2_amd64.deb ... 173s Unpacking libxft2:amd64 (2.3.6-1build2) ... 173s Selecting previously unselected package libxss1:amd64. 173s Preparing to unpack .../112-libxss1_1%3a1.2.3-1build4_amd64.deb ... 173s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 173s Selecting previously unselected package libtk8.6:amd64. 173s Preparing to unpack .../113-libtk8.6_8.6.17-1_amd64.deb ... 173s Unpacking libtk8.6:amd64 (8.6.17-1) ... 173s Selecting previously unselected package libudunits2-data. 173s Preparing to unpack .../114-libudunits2-data_2.2.28-8_all.deb ... 173s Unpacking libudunits2-data (2.2.28-8) ... 173s Selecting previously unselected package libudunits2-0:amd64. 173s Preparing to unpack .../115-libudunits2-0_2.2.28-8_amd64.deb ... 173s Unpacking libudunits2-0:amd64 (2.2.28-8) ... 173s Selecting previously unselected package libxt6t64:amd64. 173s Preparing to unpack .../116-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 173s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 173s Selecting previously unselected package node-bootstrap-sass. 173s Preparing to unpack .../117-node-bootstrap-sass_3.4.3-2_all.deb ... 173s Unpacking node-bootstrap-sass (3.4.3-2) ... 173s Selecting previously unselected package node-html5shiv. 173s Preparing to unpack .../118-node-html5shiv_3.7.3+dfsg-5_all.deb ... 173s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 173s Selecting previously unselected package node-normalize.css. 173s Preparing to unpack .../119-node-normalize.css_8.0.1-5.1_all.deb ... 173s Unpacking node-normalize.css (8.0.1-5.1) ... 173s Selecting previously unselected package pandoc-data. 173s Preparing to unpack .../120-pandoc-data_3.1.11.1-3build1_all.deb ... 173s Unpacking pandoc-data (3.1.11.1-3build1) ... 173s Selecting previously unselected package pandoc. 173s Preparing to unpack .../121-pandoc_3.1.11.1+ds-4_amd64.deb ... 173s Unpacking pandoc (3.1.11.1+ds-4) ... 174s Selecting previously unselected package zip. 174s Preparing to unpack .../122-zip_3.0-15ubuntu3_amd64.deb ... 174s Unpacking zip (3.0-15ubuntu3) ... 174s Selecting previously unselected package unzip. 174s Preparing to unpack .../123-unzip_6.0-29ubuntu1_amd64.deb 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unpack .../129-r-cran-lattice_0.22-9-1_amd64.deb ... 174s Unpacking r-cran-lattice (0.22-9-1) ... 174s Selecting previously unselected package r-cran-sp. 174s Preparing to unpack .../130-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 174s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 174s Selecting previously unselected package r-cran-littler. 174s Preparing to unpack .../131-r-cran-littler_0.3.22-1_amd64.deb ... 174s Unpacking r-cran-littler (0.3.22-1) ... 174s Selecting previously unselected package r-cran-pkgkitten. 174s Preparing to unpack .../132-r-cran-pkgkitten_0.2.4-1_all.deb ... 174s Unpacking r-cran-pkgkitten (0.2.4-1) ... 174s Selecting previously unselected package r-cran-rcpp. 174s Preparing to unpack .../133-r-cran-rcpp_1.1.0-1_amd64.deb ... 174s Unpacking r-cran-rcpp (1.1.0-1) ... 174s Selecting previously unselected package r-cran-rcpparmadillo. 174s Preparing to unpack .../134-r-cran-rcpparmadillo_15.2.3-1-1_amd64.deb ... 174s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ... 174s Selecting previously unselected package r-cran-ade4. 174s Preparing to unpack .../135-r-cran-ade4_1.7-23-1_amd64.deb ... 174s Unpacking r-cran-ade4 (1.7-23-1) ... 174s Selecting previously unselected package r-cran-kernsmooth. 174s Preparing to unpack .../136-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 174s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 174s Selecting previously unselected package r-cran-png. 174s Preparing to unpack .../137-r-cran-png_0.1-8-1build2_amd64.deb ... 174s Unpacking r-cran-png (0.1-8-1build2) ... 174s Selecting previously unselected package r-cran-jpeg. 174s Preparing to unpack .../138-r-cran-jpeg_0.1-10-1_amd64.deb ... 174s Unpacking r-cran-jpeg (0.1-10-1) ... 174s Selecting previously unselected package r-cran-rcolorbrewer. 174s Preparing to unpack .../139-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 174s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 174s Selecting previously unselected package r-cran-deldir. 174s Preparing to unpack .../140-r-cran-deldir_2.0-4-1build1_amd64.deb ... 174s Unpacking r-cran-deldir (2.0-4-1build1) ... 174s Selecting previously unselected package r-cran-matrix. 174s Preparing to unpack .../141-r-cran-matrix_1.7-4-1_amd64.deb ... 174s Unpacking r-cran-matrix (1.7-4-1) ... 174s Selecting previously unselected package r-cran-rcppeigen. 174s Preparing to unpack .../142-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 174s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 174s Selecting previously unselected package r-cran-interp. 174s Preparing to unpack .../143-r-cran-interp_1.1-6-1_amd64.deb ... 174s Unpacking r-cran-interp (1.1-6-1) ... 174s Selecting previously unselected package r-cran-latticeextra. 174s Preparing to unpack .../144-r-cran-latticeextra_0.6-31-1_all.deb ... 174s Unpacking r-cran-latticeextra (0.6-31-1) ... 174s Selecting previously unselected package r-cran-adegraphics. 174s Preparing to unpack .../145-r-cran-adegraphics_1.0-22-1_all.deb ... 174s Unpacking r-cran-adegraphics (1.0-22-1) ... 174s Selecting previously unselected package r-cran-backports. 174s Preparing to unpack .../146-r-cran-backports_1.5.0-2_amd64.deb ... 174s Unpacking r-cran-backports (1.5.0-2) ... 174s Selecting previously unselected package r-cran-base64enc. 174s Preparing to unpack .../147-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 174s Unpacking r-cran-base64enc (0.1-3-3build1) ... 174s Selecting previously unselected package r-cran-boot. 174s Preparing to unpack .../148-r-cran-boot_1.3-32-1_all.deb ... 174s Unpacking r-cran-boot (1.3-32-1) ... 174s Selecting previously unselected package r-cran-cli. 174s Preparing to unpack .../149-r-cran-cli_3.6.4-1_amd64.deb ... 174s Unpacking r-cran-cli (3.6.4-1) ... 174s Selecting previously unselected package r-cran-generics. 174s Preparing to unpack .../150-r-cran-generics_0.1.4-1_all.deb ... 174s Unpacking r-cran-generics (0.1.4-1) ... 174s Selecting previously unselected package r-cran-glue. 174s Preparing to unpack .../151-r-cran-glue_1.8.0-1_amd64.deb ... 174s Unpacking r-cran-glue (1.8.0-1) ... 175s Selecting previously unselected package r-cran-rlang. 175s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_amd64.deb ... 175s Unpacking r-cran-rlang (1.1.5-3) ... 175s Selecting previously unselected package r-cran-lifecycle. 175s Preparing to unpack .../153-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 175s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 175s Selecting previously unselected package r-cran-magrittr. 175s Preparing to unpack .../154-r-cran-magrittr_2.0.3-1_amd64.deb ... 175s Unpacking r-cran-magrittr (2.0.3-1) ... 175s Selecting previously unselected package r-cran-utf8. 175s Preparing to unpack .../155-r-cran-utf8_1.2.4-1_amd64.deb ... 175s Unpacking r-cran-utf8 (1.2.4-1) ... 175s Selecting previously unselected package r-cran-vctrs. 175s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_amd64.deb ... 175s Unpacking r-cran-vctrs (0.6.5-1) ... 175s Selecting previously unselected package r-cran-pillar. 175s Preparing to unpack .../157-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 175s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 175s Selecting previously unselected package r-cran-r6. 175s Preparing to unpack .../158-r-cran-r6_2.6.1-1_all.deb ... 175s Unpacking r-cran-r6 (2.6.1-1) ... 175s Selecting previously unselected package r-cran-fansi. 175s Preparing to unpack .../159-r-cran-fansi_1.0.6-2_amd64.deb ... 175s Unpacking r-cran-fansi (1.0.6-2) ... 175s Selecting previously unselected package r-cran-pkgconfig. 175s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 175s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 175s Selecting previously unselected package r-cran-tibble. 175s Preparing to unpack .../161-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 175s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 175s Selecting previously unselected package r-cran-withr. 175s Preparing to unpack .../162-r-cran-withr_3.0.2+dfsg-1_all.deb ... 175s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 175s Selecting previously unselected package r-cran-tidyselect. 175s Preparing to unpack .../163-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 175s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 175s Selecting previously unselected package r-cran-dplyr. 175s Preparing to unpack .../164-r-cran-dplyr_1.1.4-4_amd64.deb ... 175s Unpacking r-cran-dplyr (1.1.4-4) ... 175s Selecting previously unselected package r-cran-purrr. 175s Preparing to unpack .../165-r-cran-purrr_1.0.4-1_amd64.deb ... 175s Unpacking r-cran-purrr (1.0.4-1) ... 175s Selecting previously unselected package r-cran-stringi. 175s Preparing to unpack .../166-r-cran-stringi_1.8.4-1build2_amd64.deb ... 175s Unpacking r-cran-stringi (1.8.4-1build2) ... 175s Selecting previously unselected package r-cran-stringr. 175s Preparing to unpack .../167-r-cran-stringr_1.5.1-1_all.deb ... 175s Unpacking r-cran-stringr (1.5.1-1) ... 175s Selecting previously unselected package r-cran-cpp11. 175s Preparing to unpack .../168-r-cran-cpp11_0.5.3-1_all.deb ... 175s Unpacking r-cran-cpp11 (0.5.3-1) ... 175s Selecting previously unselected package r-cran-tidyr. 175s Preparing to unpack .../169-r-cran-tidyr_1.3.1-1_amd64.deb ... 175s Unpacking r-cran-tidyr (1.3.1-1) ... 175s Selecting previously unselected package r-cran-broom. 175s Preparing to unpack .../170-r-cran-broom_1.0.12+dfsg-1_all.deb ... 175s Unpacking r-cran-broom (1.0.12+dfsg-1) ... 175s Selecting previously unselected package r-cran-fastmap. 175s Preparing to unpack .../171-r-cran-fastmap_1.2.0-1_amd64.deb ... 175s Unpacking r-cran-fastmap (1.2.0-1) ... 175s Selecting previously unselected package r-cran-cachem. 175s Preparing to unpack .../172-r-cran-cachem_1.1.0-1_amd64.deb ... 175s Unpacking r-cran-cachem (1.1.0-1) ... 175s Selecting previously unselected package r-cran-digest. 175s Preparing to unpack .../173-r-cran-digest_0.6.39-1_amd64.deb ... 175s Unpacking r-cran-digest (0.6.39-1) ... 175s Selecting previously unselected package r-cran-htmltools. 175s Preparing to unpack .../174-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 175s Unpacking r-cran-htmltools (0.5.8.1-1) ... 175s Selecting previously unselected package r-cran-jquerylib. 175s Preparing to unpack .../175-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 175s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 175s Selecting previously unselected package r-cran-jsonlite. 175s Preparing to unpack .../176-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 175s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 175s Selecting previously unselected package r-cran-memoise. 175s Preparing to unpack .../177-r-cran-memoise_2.0.1-1build1_all.deb ... 175s Unpacking r-cran-memoise (2.0.1-1build1) ... 175s Selecting previously unselected package r-cran-mime. 175s Preparing to unpack .../178-r-cran-mime_0.12-2_amd64.deb ... 175s Unpacking r-cran-mime (0.12-2) ... 175s Selecting previously unselected package r-cran-fs. 175s Preparing to unpack .../179-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 175s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 175s Selecting previously unselected package r-cran-rappdirs. 175s Preparing to unpack .../180-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 175s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 175s Selecting previously unselected package r-cran-sass. 175s Preparing to unpack .../181-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 175s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 175s Selecting previously unselected package r-cran-bslib. 175s Preparing to unpack .../182-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 175s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 175s Selecting previously unselected package r-cran-cardata. 175s Preparing to unpack .../183-r-cran-cardata_3.0.6-1_all.deb ... 175s Unpacking r-cran-cardata (3.0.6-1) ... 175s Selecting previously unselected package r-cran-formula. 175s Preparing to unpack .../184-r-cran-formula_1.2-5-1_all.deb ... 175s Unpacking r-cran-formula (1.2-5-1) ... 175s Selecting previously unselected package r-cran-nlme. 175s Preparing to unpack .../185-r-cran-nlme_3.1.168-1_amd64.deb ... 175s Unpacking r-cran-nlme (3.1.168-1) ... 175s Selecting previously unselected package r-cran-mgcv. 175s Preparing to unpack .../186-r-cran-mgcv_1.9-4-1_amd64.deb ... 175s Unpacking r-cran-mgcv (1.9-4-1) ... 175s Selecting previously unselected package r-cran-nnet. 175s Preparing to unpack .../187-r-cran-nnet_7.3-20-1_amd64.deb ... 175s Unpacking r-cran-nnet (7.3-20-1) ... 175s Selecting previously unselected package r-cran-minqa. 175s Preparing to unpack .../188-r-cran-minqa_1.2.8-1_amd64.deb ... 175s Unpacking r-cran-minqa (1.2.8-1) ... 175s Selecting previously unselected package libnlopt0:amd64. 175s Preparing to unpack .../189-libnlopt0_2.7.1-7ubuntu1_amd64.deb ... 175s Unpacking libnlopt0:amd64 (2.7.1-7ubuntu1) ... 175s Selecting previously unselected package r-cran-nloptr. 175s Preparing to unpack .../190-r-cran-nloptr_2.2.1-2_amd64.deb ... 175s Unpacking r-cran-nloptr (2.2.1-2) ... 175s Selecting previously unselected package r-cran-rbibutils. 175s Preparing to unpack .../191-r-cran-rbibutils_2.3-1_amd64.deb ... 175s Unpacking r-cran-rbibutils (2.3-1) ... 175s Selecting previously unselected package r-cran-rdpack. 175s Preparing to unpack .../192-r-cran-rdpack_2.6.3-1_all.deb ... 175s Unpacking r-cran-rdpack (2.6.3-1) ... 175s Selecting previously unselected package r-cran-reformulas. 175s Preparing to unpack .../193-r-cran-reformulas_0.4.4-1_all.deb ... 175s Unpacking r-cran-reformulas (0.4.4-1) ... 176s Selecting previously unselected package r-cran-statmod. 176s Preparing to unpack .../194-r-cran-statmod_1.5.0-1_amd64.deb ... 176s Unpacking r-cran-statmod (1.5.0-1) ... 176s Selecting previously unselected package r-cran-lme4. 176s Preparing to unpack .../195-r-cran-lme4_1.1-38-1_amd64.deb ... 176s Unpacking r-cran-lme4 (1.1-38-1) ... 176s Selecting previously unselected package r-cran-numderiv. 176s Preparing to unpack .../196-r-cran-numderiv_2016.8-1.1-3build1_all.deb ... 176s Unpacking r-cran-numderiv (2016.8-1.1-3build1) ... 176s Selecting previously unselected package r-cran-gtable. 176s Preparing to unpack .../197-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 176s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 176s Selecting previously unselected package r-cran-isoband. 176s Preparing to unpack .../198-r-cran-isoband_0.2.7-1_amd64.deb ... 176s Unpacking r-cran-isoband (0.2.7-1) ... 176s Selecting previously unselected package r-cran-farver. 176s Preparing to unpack .../199-r-cran-farver_2.1.2-1_amd64.deb ... 176s Unpacking r-cran-farver (2.1.2-1) ... 176s Selecting previously unselected package r-cran-labeling. 176s Preparing to unpack .../200-r-cran-labeling_0.4.3-1_all.deb ... 176s Unpacking r-cran-labeling (0.4.3-1) ... 176s Selecting previously unselected package r-cran-viridislite. 176s Preparing to unpack .../201-r-cran-viridislite_0.4.3-1_all.deb ... 176s Unpacking r-cran-viridislite (0.4.3-1) ... 176s Selecting previously unselected package r-cran-scales. 176s Preparing to unpack .../202-r-cran-scales_1.4.0-1_all.deb ... 176s Unpacking r-cran-scales (1.4.0-1) ... 176s Selecting previously unselected package r-cran-ggplot2. 176s Preparing to unpack .../203-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 176s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-cowplot. 176s Preparing to unpack .../204-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 176s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 176s Selecting previously unselected package r-cran-deriv. 176s Preparing to unpack .../205-r-cran-deriv_4.2.0-1_all.deb ... 176s Unpacking r-cran-deriv (4.2.0-1) ... 176s Selecting previously unselected package r-cran-colorspace. 176s Preparing to unpack .../206-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 176s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 176s Selecting previously unselected package r-cran-fracdiff. 176s Preparing to unpack .../207-r-cran-fracdiff_1.5-3-1_amd64.deb ... 176s Unpacking r-cran-fracdiff (1.5-3-1) ... 176s Selecting previously unselected package r-cran-zoo. 176s Preparing to unpack .../208-r-cran-zoo_1.8-15-1_amd64.deb ... 176s Unpacking r-cran-zoo (1.8-15-1) ... 176s Selecting previously unselected package r-cran-lmtest. 176s Preparing to unpack .../209-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 176s Unpacking r-cran-lmtest (0.9.40-1build1) ... 176s Selecting previously unselected package r-cran-timedate. 176s Preparing to unpack .../210-r-cran-timedate_4052.112-1_amd64.deb ... 176s Unpacking r-cran-timedate (4052.112-1) ... 176s Selecting previously unselected package r-cran-quadprog. 176s Preparing to unpack .../211-r-cran-quadprog_1.5-8-1build2_amd64.deb ... 176s Unpacking r-cran-quadprog (1.5-8-1build2) ... 176s Selecting previously unselected package r-cran-xts. 176s Preparing to unpack .../212-r-cran-xts_0.14.1-1_amd64.deb ... 176s Unpacking r-cran-xts (0.14.1-1) ... 176s Selecting previously unselected package r-cran-curl. 176s Preparing to unpack .../213-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 176s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-ttr. 176s Preparing to unpack .../214-r-cran-ttr_0.24.4-1_amd64.deb ... 176s Unpacking r-cran-ttr (0.24.4-1) ... 176s Selecting previously unselected package r-cran-quantmod. 176s Preparing to unpack .../215-r-cran-quantmod_0.4.28-1_all.deb ... 176s Unpacking r-cran-quantmod (0.4.28-1) ... 176s Selecting previously unselected package r-cran-tseries. 176s Preparing to unpack .../216-r-cran-tseries_0.10-59-3_amd64.deb ... 176s Unpacking r-cran-tseries (0.10-59-3) ... 176s Selecting previously unselected package r-cran-urca. 176s Preparing to unpack .../217-r-cran-urca_1.3-4-1build1_amd64.deb ... 176s Unpacking r-cran-urca (1.3-4-1build1) ... 176s Selecting previously unselected package r-cran-forecast. 176s Preparing to unpack .../218-r-cran-forecast_8.23.0-1_amd64.deb ... 176s Unpacking r-cran-forecast (8.23.0-1) ... 176s Selecting previously unselected package r-cran-modelr. 176s Preparing to unpack .../219-r-cran-modelr_0.1.11-1_all.deb ... 176s Unpacking r-cran-modelr (0.1.11-1) ... 176s Selecting previously unselected package r-cran-microbenchmark. 176s Preparing to unpack .../220-r-cran-microbenchmark_1.5.0-1_amd64.deb ... 176s Unpacking r-cran-microbenchmark (1.5.0-1) ... 176s Selecting previously unselected package r-cran-doby. 176s Preparing to unpack .../221-r-cran-doby_4.7.1-3_all.deb ... 176s Unpacking r-cran-doby (4.7.1-3) ... 176s Selecting previously unselected package r-cran-evaluate. 176s Preparing to unpack .../222-r-cran-evaluate_1.0.5-1_all.deb ... 176s Unpacking r-cran-evaluate (1.0.5-1) ... 176s Selecting previously unselected package r-cran-xfun. 176s Preparing to unpack .../223-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 176s Unpacking r-cran-xfun (0.55+dfsg-1) ... 176s Selecting previously unselected package r-cran-highr. 176s Preparing to unpack .../224-r-cran-highr_0.11+dfsg-1_all.deb ... 176s Unpacking r-cran-highr (0.11+dfsg-1) ... 176s Selecting previously unselected package r-cran-yaml. 176s Preparing to unpack .../225-r-cran-yaml_2.3.10-1_amd64.deb ... 176s Unpacking r-cran-yaml (2.3.10-1) ... 176s Selecting previously unselected package libjs-mathjax. 176s Preparing to unpack .../226-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 176s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 176s Selecting previously unselected package r-cran-knitr. 176s Preparing to unpack .../227-r-cran-knitr_1.51+dfsg-1_all.deb ... 176s Unpacking r-cran-knitr (1.51+dfsg-1) ... 176s Selecting previously unselected package r-cran-pbkrtest. 176s Preparing to unpack .../228-r-cran-pbkrtest_0.5.5-1_all.deb ... 176s Unpacking r-cran-pbkrtest (0.5.5-1) ... 176s Selecting previously unselected package r-cran-sparsem. 176s Preparing to unpack .../229-r-cran-sparsem_1.84-2-1_amd64.deb ... 176s Unpacking r-cran-sparsem (1.84-2-1) ... 176s Selecting previously unselected package r-cran-matrixmodels. 176s Preparing to unpack .../230-r-cran-matrixmodels_0.5-4-1_all.deb ... 176s Unpacking r-cran-matrixmodels (0.5-4-1) ... 176s Selecting previously unselected package r-cran-survival. 176s Preparing to unpack .../231-r-cran-survival_3.8-6-1_amd64.deb ... 176s Unpacking r-cran-survival (3.8-6-1) ... 176s Selecting previously unselected package r-cran-matrixstats. 176s Preparing to unpack .../232-r-cran-matrixstats_1.5.0-1_amd64.deb ... 176s Unpacking r-cran-matrixstats (1.5.0-1) ... 177s Selecting previously unselected package r-cran-class. 177s Preparing to unpack .../233-r-cran-class_7.3-23-1_amd64.deb ... 177s Unpacking r-cran-class (7.3-23-1) ... 177s Selecting previously unselected package r-cran-proxy. 177s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_amd64.deb ... 177s Unpacking r-cran-proxy (0.4-27-1) ... 177s Selecting previously unselected package r-cran-e1071. 177s Preparing to unpack .../235-r-cran-e1071_1.7-17-1_amd64.deb ... 177s Unpacking r-cran-e1071 (1.7-17-1) ... 177s Selecting previously unselected package r-cran-codetools. 177s Preparing to unpack .../236-r-cran-codetools_0.2-20-1build1_all.deb ... 177s Unpacking r-cran-codetools (0.2-20-1build1) ... 177s Selecting previously unselected package r-cran-iterators. 177s Preparing to unpack .../237-r-cran-iterators_1.0.14-1build1_all.deb ... 177s Unpacking r-cran-iterators (1.0.14-1build1) ... 177s Selecting previously unselected package r-cran-foreach. 177s Preparing to unpack .../238-r-cran-foreach_1.5.2-1build1_all.deb ... 177s Unpacking r-cran-foreach (1.5.2-1build1) ... 177s Selecting previously unselected package r-cran-data.table. 177s Preparing to unpack .../239-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 177s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 177s Selecting previously unselected package r-cran-modelmetrics. 177s Preparing to unpack .../240-r-cran-modelmetrics_1.2.2.2-1build2_amd64.deb ... 177s Unpacking r-cran-modelmetrics (1.2.2.2-1build2) ... 177s Selecting previously unselected package r-cran-plyr. 177s Preparing to unpack .../241-r-cran-plyr_1.8.9-1_amd64.deb ... 177s Unpacking r-cran-plyr (1.8.9-1) ... 177s Selecting previously unselected package r-cran-proc. 177s Preparing to unpack .../242-r-cran-proc_1.18.5-1_amd64.deb ... 177s Unpacking r-cran-proc (1.18.5-1) ... 177s Selecting previously unselected package r-cran-tzdb. 177s Preparing to unpack .../243-r-cran-tzdb_0.5.0-1_amd64.deb ... 177s Unpacking r-cran-tzdb (0.5.0-1) ... 177s Selecting previously unselected package r-cran-clock. 177s Preparing to unpack .../244-r-cran-clock_0.7.2-1_amd64.deb ... 177s Unpacking r-cran-clock (0.7.2-1) ... 177s Selecting previously unselected package r-cran-gower. 177s Preparing to unpack .../245-r-cran-gower_1.0.2-1_amd64.deb ... 177s Unpacking r-cran-gower (1.0.2-1) ... 177s Selecting previously unselected package r-cran-sparsevctrs. 177s Preparing to unpack .../246-r-cran-sparsevctrs_0.2.0-2_amd64.deb ... 177s Unpacking r-cran-sparsevctrs (0.2.0-2) ... 177s Selecting previously unselected package r-cran-hardhat. 177s Preparing to unpack .../247-r-cran-hardhat_1.4.2+dfsg-1_all.deb ... 177s Unpacking r-cran-hardhat (1.4.2+dfsg-1) ... 177s Selecting previously unselected package r-cran-rpart. 177s Preparing to unpack .../248-r-cran-rpart_4.1.24-1build1_amd64.deb ... 177s Unpacking r-cran-rpart (4.1.24-1build1) ... 177s Selecting previously unselected package r-cran-shape. 177s Preparing to unpack .../249-r-cran-shape_1.4.6.1-1_all.deb ... 177s Unpacking r-cran-shape (1.4.6.1-1) ... 177s Selecting previously unselected package r-cran-diagram. 177s Preparing to unpack .../250-r-cran-diagram_1.6.5-2_all.deb ... 177s Unpacking r-cran-diagram (1.6.5-2) ... 177s Selecting previously unselected package r-cran-globals. 177s Preparing to unpack .../251-r-cran-globals_0.19.0-1_all.deb ... 177s Unpacking r-cran-globals (0.19.0-1) ... 177s Selecting previously unselected package r-cran-listenv. 177s Preparing to unpack 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r-cran-squarem (2021.1-1build1) ... 177s Selecting previously unselected package r-cran-lava. 177s Preparing to unpack .../258-r-cran-lava_1.8.2+dfsg-1_all.deb ... 177s Unpacking r-cran-lava (1.8.2+dfsg-1) ... 177s Selecting previously unselected package r-cran-prodlim. 177s Preparing to unpack .../259-r-cran-prodlim_2024.06.25-1_amd64.deb ... 177s Unpacking r-cran-prodlim (2024.06.25-1) ... 177s Selecting previously unselected package r-cran-ipred. 177s Preparing to unpack .../260-r-cran-ipred_0.9-15-1_amd64.deb ... 177s Unpacking r-cran-ipred (0.9-15-1) ... 177s Selecting previously unselected package r-cran-timechange. 177s Preparing to unpack .../261-r-cran-timechange_0.3.0-2_amd64.deb ... 177s Unpacking r-cran-timechange (0.3.0-2) ... 177s Selecting previously unselected package r-cran-lubridate. 177s Preparing to unpack .../262-r-cran-lubridate_1.9.4+dfsg-1_amd64.deb ... 177s Unpacking r-cran-lubridate (1.9.4+dfsg-1) ... 177s Selecting previously unselected package r-cran-recipes. 177s Preparing to unpack .../263-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 177s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 177s Selecting previously unselected package r-cran-reshape2. 177s Preparing to unpack .../264-r-cran-reshape2_1.4.4-2build2_amd64.deb ... 177s Unpacking r-cran-reshape2 (1.4.4-2build2) ... 177s Selecting previously unselected package r-cran-caret. 177s Preparing to unpack .../265-r-cran-caret_7.0-1+dfsg-1_amd64.deb ... 177s Unpacking r-cran-caret (7.0-1+dfsg-1) ... 177s Selecting previously unselected package r-cran-conquer. 177s Preparing to unpack .../266-r-cran-conquer_1.3.3-1_amd64.deb ... 177s Unpacking r-cran-conquer (1.3.3-1) ... 177s Selecting previously unselected package r-cran-quantreg. 177s Preparing to unpack .../267-r-cran-quantreg_6.1-1_amd64.deb ... 177s Unpacking r-cran-quantreg (6.1-1) ... 177s Selecting previously unselected package r-cran-car. 177s Preparing to unpack .../268-r-cran-car_3.1-5-1_all.deb ... 177s Unpacking r-cran-car (3.1-5-1) ... 177s Selecting previously unselected package r-cran-classint. 177s Preparing to unpack .../269-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 177s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 177s Selecting previously unselected package r-cran-commonmark. 177s Preparing to unpack .../270-r-cran-commonmark_1.9.5-1_amd64.deb ... 177s Unpacking r-cran-commonmark (1.9.5-1) ... 177s Selecting previously unselected package r-cran-crayon. 177s Preparing to unpack .../271-r-cran-crayon_1.5.3-1_all.deb ... 177s Unpacking r-cran-crayon (1.5.3-1) ... 177s Selecting previously unselected package r-cran-dbi. 177s Preparing to unpack .../272-r-cran-dbi_1.2.3-1build1_all.deb ... 177s Unpacking r-cran-dbi (1.2.3-1build1) ... 177s Selecting previously unselected package r-cran-fontawesome. 177s Preparing to unpack .../273-r-cran-fontawesome_0.5.3-1_all.deb ... 177s Unpacking r-cran-fontawesome (0.5.3-1) ... 177s Selecting previously unselected package r-cran-guerry. 177s 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Setting up r-cran-viridislite (0.4.3-1) ... 181s Setting up r-cran-pixmap (0.4-14-1) ... 181s Setting up r-cran-sparsem (1.84-2-1) ... 181s Setting up r-cran-statmod (1.5.0-1) ... 181s Setting up r-cran-nnet (7.3-20-1) ... 181s Setting up r-cran-wk (0.9.4-1) ... 181s Setting up r-cran-commonmark (1.9.5-1) ... 181s Setting up r-cran-proxy (0.4-27-1) ... 181s Setting up r-cran-r6 (2.6.1-1) ... 181s Setting up r-cran-pkgkitten (0.2.4-1) ... 181s Setting up r-cran-jpeg (0.1-10-1) ... 181s Setting up r-cran-numderiv (2016.8-1.1-3build1) ... 181s Setting up r-cran-magrittr (2.0.3-1) ... 181s Setting up r-cran-rappdirs (0.3.3-1build1) ... 181s Setting up r-cran-microbenchmark (1.5.0-1) ... 181s Setting up r-cran-quadprog (1.5-8-1build2) ... 181s Setting up r-cran-littler (0.3.22-1) ... 181s Setting up r-cran-fs (1.6.5+dfsg-1) ... 181s Setting up r-cran-rcpp (1.1.0-1) ... 181s Setting up r-cran-curl (7.0.0+dfsg-1) ... 181s Setting up r-cran-codetools (0.2-20-1build1) ... 181s Setting up 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(4052.112-1) ... 181s Setting up r-cran-highr (0.11+dfsg-1) ... 181s Setting up r-cran-foreach (1.5.2-1build1) ... 181s Setting up r-cran-fansi (1.0.6-2) ... 181s Setting up r-cran-cardata (3.0.6-1) ... 181s Setting up r-cran-mass (7.3-65-1) ... 181s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 181s Setting up r-cran-glue (1.8.0-1) ... 181s Setting up r-cran-fracdiff (1.5-3-1) ... 181s Setting up r-cran-xtable (1:1.8-4-2build1) ... 181s Setting up r-cran-cli (3.6.4-1) ... 181s Setting up r-cran-rbibutils (2.3-1) ... 181s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 181s Setting up r-cran-progressr (0.15.1-1) ... 181s Setting up r-cran-deldir (2.0-4-1build1) ... 181s Setting up r-cran-shape (1.4.6.1-1) ... 181s Setting up r-cran-fastmap (1.2.0-1) ... 181s Setting up r-cran-png (0.1-8-1build2) ... 181s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 181s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 181s Setting up r-cran-sp (1:2.2-0+dfsg-1) ... 181s Setting up r-cran-utf8 (1.2.4-1) ... 181s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 181s Setting up r-cran-parallelly (1.42.0-1) ... 181s Setting up r-cran-stringi (1.8.4-1build2) ... 181s Setting up r-cran-spdata (2.3.4-1) ... 181s Setting up r-cran-markdown (1.13-1) ... 181s Setting up r-cran-cpp11 (0.5.3-1) ... 181s Setting up r-cran-plyr (1.8.9-1) ... 181s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 181s Setting up r-cran-isoband (0.2.7-1) ... 181s Setting up r-cran-diagram (1.6.5-2) ... 181s Setting up r-cran-scales (1.4.0-1) ... 181s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 181s Setting up r-cran-zoo (1.8-15-1) ... 181s Setting up r-cran-guerry (1.8.3-1) ... 181s Setting up r-cran-units (0.8-7+dfsg-2) ... 181s Setting up r-cran-later (1.4.1+dfsg-1) ... 181s Setting up r-cran-matrix (1.7-4-1) ... 181s Setting up r-cran-htmltools (0.5.8.1-1) ... 181s Setting up r-cran-tinytex (0.58-1) ... 181s Setting up r-cran-kernsmooth (2.23-26-1build1) ... 181s Setting up r-cran-knitr (1.51+dfsg-1) ... 181s Setting up r-cran-mgcv (1.9-4-1) ... 181s Setting up r-cran-cachem (1.1.0-1) ... 181s Setting up r-cran-lmtest (0.9.40-1build1) ... 181s Setting up r-cran-sass (0.4.9+dfsg-1) ... 181s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ... 181s Setting up r-cran-tzdb (0.5.0-1) ... 181s Setting up r-cran-globals (0.19.0-1) ... 181s Setting up r-cran-vctrs (0.6.5-1) ... 181s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 181s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 181s Setting up r-cran-minqa (1.2.8-1) ... 181s Setting up r-cran-stringr (1.5.1-1) ... 181s Setting up r-cran-class (7.3-23-1) ... 181s Setting up r-cran-modelmetrics (1.2.2.2-1build2) ... 181s Setting up r-cran-matrixmodels (0.5-4-1) ... 181s Setting up r-cran-sparsevctrs (0.2.0-2) ... 181s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 181s Setting up r-cran-clock (0.7.2-1) ... 181s Setting up r-cran-proc (1.18.5-1) ... 181s Setting up r-cran-fontawesome (0.5.3-1) ... 181s Setting up r-cran-survival (3.8-6-1) ... 181s Setting up r-cran-xts (0.14.1-1) ... 181s Setting up r-cran-rdpack (2.6.3-1) ... 181s Setting up r-cran-ade4 (1.7-23-1) ... 181s Setting up r-cran-future (1.34.0+dfsg-1) ... 181s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 181s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 181s Setting up r-cran-reshape2 (1.4.4-2build2) ... 181s Setting up r-cran-interp (1.1-6-1) ... 181s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 181s Setting up r-cran-timechange (0.3.0-2) ... 181s Setting up r-cran-memoise (2.0.1-1build1) ... 181s Setting up r-cran-lava (1.8.2+dfsg-1) ... 181s Setting up r-cran-promises (1.3.2+dfsg-1) ... 181s Setting up r-cran-purrr (1.0.4-1) ... 181s Setting up r-cran-e1071 (1.7-17-1) ... 181s Setting up r-cran-hardhat (1.4.2+dfsg-1) ... 181s Setting up r-cran-dplyr (1.1.4-4) ... 181s Setting up r-cran-reformulas (0.4.4-1) ... 181s Setting up r-cran-ttr (0.24.4-1) ... 181s Setting up r-cran-lubridate (1.9.4+dfsg-1) ... 181s Setting up r-cran-prodlim (2024.06.25-1) ... 181s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 181s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 181s Setting up r-cran-rpart (4.1.24-1build1) ... 181s Setting up r-cran-latticeextra (0.6-31-1) ... 181s Setting up r-cran-ipred (0.9-15-1) ... 181s Setting up r-cran-lme4 (1.1-38-1) ... 181s Setting up r-cran-classint (0.4-11+dfsg-1) ... 181s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 181s Setting up r-cran-tidyr (1.3.1-1) ... 181s Setting up r-cran-recipes (1.1.0+dfsg-1) ... 181s Setting up r-cran-quantmod (0.4.28-1) ... 181s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 181s Setting up r-cran-adegraphics (1.0-22-1) ... 181s Setting up r-cran-caret (7.0-1+dfsg-1) ... 181s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 181s Setting up r-cran-tseries (0.10-59-3) ... 181s Setting up r-cran-broom (1.0.12+dfsg-1) ... 181s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 181s Setting up r-cran-conquer (1.3.3-1) ... 181s Setting up r-cran-forecast (8.23.0-1) ... 181s Setting up r-cran-quantreg (6.1-1) ... 181s Setting up r-cran-modelr (0.1.11-1) ... 181s Setting up r-cran-doby (4.7.1-3) ... 181s Setting up r-cran-pbkrtest (0.5.5-1) ... 181s Setting up r-cran-car (3.1-5-1) ... 181s Setting up libheif1:amd64 (1.21.2-1) ... 181s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 181s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 181s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ... 181s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 181s Setting up r-cran-spdep (1.3-5+dfsg-1) ... 181s Processing triggers for install-info (7.2-5) ... 181s Processing triggers for libc-bin (2.42-2ubuntu4) ... 181s Processing triggers for man-db (2.13.1-1build1) ... 182s autopkgtest [01:48:09]: test run-unit-test: [----------------------- 182s 182s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 182s Copyright (C) 2025 The R Foundation for Statistical Computing 182s Platform: x86_64-pc-linux-gnu 182s 182s R is free software and comes with ABSOLUTELY NO WARRANTY. 182s You are welcome to redistribute it under certain conditions. 182s Type 'license()' or 'licence()' for distribution details. 182s 182s R is a collaborative project with many contributors. 182s Type 'contributors()' for more information and 182s 'citation()' on how to cite R or R packages in publications. 182s 182s Type 'demo()' for some demos, 'help()' for on-line help, or 182s 'help.start()' for an HTML browser interface to help. 182s Type 'q()' to quit R. 182s 183s > library(adegraphics) 183s Registered S3 methods overwritten by 'adegraphics': 183s method from 183s biplot.dudi ade4 183s kplot.foucart ade4 183s kplot.mcoa ade4 183s kplot.mfa ade4 183s kplot.pta ade4 183s kplot.sepan ade4 183s kplot.statis ade4 183s scatter.coa ade4 183s scatter.dudi ade4 183s scatter.nipals ade4 183s scatter.pco ade4 183s score.acm ade4 183s score.mix ade4 183s score.pca ade4 183s screeplot.dudi ade4 183s > pdf("add.pdf") 183s > set.seed(40) 183s > 183s > ########################### add.ADEg ############################## 183s > 183s > data(granulo, package = "ade4") 183s > df <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 183s > pca <- ade4::dudi.pca(df, scal = FALSE, scan = FALSE) 183s > 183s > g1 <- s.arrow(ade4::dudi.pca(data.frame(df), scan = F, nf = 2)$co) 183s > g2 <- s.label(pca$li, plabels.cex = 0.5, plabels.col = "blue", plot = F) 183s > g3 <- add.ADEg(g2) 183s > g4 <- s.label(pca$c1, plabels.col = "red", add = T) 183s > 183s > g5 <- s.arrow(pca$c1, plabels.cex = 1.5, plot = FALSE) 183s > g6 <- ADEgS(list(g1 = g1, g5 = g5), layout = c(1, 2)) 183s > update(g6, pback.col = "lightblue", g1.plabels.cex = 2, g5.plabels.col = "red") 183s > 183s > 183s > ############################## addhist ############################## 183s > dfxy1 <- matrix(rnorm(200), ncol = 2) 183s > gh1 <- s.label(dfxy1) 183s > gh2 <- addhist(gh1) 183s > 183s > dfxy2 <- dfxy1 183s > dfxy2[, 2] <- dfxy2[, 2] + rnorm(100, 2) 183s > gh3 <- s.label(dfxy2) 183s > gh4 <- addhist(gh3, plot.polygon = list(col = "red")) 184s > 184s > data(rpjdl, package = "ade4") 184s > coa1 <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 184s > gh5 <- s.label(coa1$li) 184s > gh6 <- addhist(gh5) 184s > 184s > 184s > ############################## addtext ############################## 184s > # on a ADEg 184s > addtext(g1, -1, 1, "Data Granulo", plabels.cex = 1.5, plabels.col = "red") 184s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) # the two labels are superposed 184s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") # the two labels are superposed 184s > 184s > addtext(g1, c(-1, -0.5), 1, "Data Granulo", plabels.cex = 1.5, plabels.col = c("red", "blue")) 184s > addtext(g1, c(-1, -0.5), 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) 184s > 184s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") 184s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = c(1.5, 2), plabels.col = "red") 184s > 184s > data(dunedata, package = "ade4") 184s > afc1 <- ade4::dudi.coa(dunedata$veg, scannf = FALSE) 184s > g7 <- table.value(dunedata$veg, symbol = "circle", ppoints.cex = 0.5, plot = FALSE) 184s > addtext(g7, 1, 20, "A", plabels.srt = 45, plabels.boxes.draw = FALSE) 184s > 184s > # on a ADEgS: juxtaposition 184s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1) 184s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("blue", "green"), which = 2) 184s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue"), which = 2) 184s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1:2) 184s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue")) 184s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.col = "blue", plabels.cex = 1.2, which = 1:2) 184s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.cex = c(0.5, 1.5), plabels.col = c("blue", "green4")) 185s > 185s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 185s > fac2 <- factor(xy2$x > 0) 185s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 185s > addtext(g9, 0, 0, "A", plabels.col = "red", plabels.cex = 2) 185s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col ="red", plabels.cex = 2, which = 1:2) 185s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col = c("green4", "red"), plabels.cex = c(3, 2), which = 1:2) 185s > 185s > # on a ADEgS: facets 185s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 185s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 185s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 185s > addtext(g10, c(0.5, 0.5, -0.5, -0.5), c(0.5, -0.5), levels(posi), plabels.cex = 2, plabels.col = 1:4) 185s > 185s > 185s > ############################## addline ############################## 185s > # on a 2D plot 185s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), plot = FALSE) 185s > addline(g11, 0, 1, plines = list(col = "red", lwd = 2, lty = 2)) 185s > addline(g11, h = 1, plines.col = "chartreuse4", plines.lwd = 3) 185s > addline(g11, v = c(-1, 1), plines.col = "cadetblue", plines.lwd = 3) 185s > 185s > # on a 1D plot 185s > g12 <- s1d.label(rnorm(10), plot = FALSE) 185s > addline(g12, v = 1, plines.col = "chartreuse4", plines.lwd = 3) 185s > 185s > # on a ADEgS: juxtaposition 185s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 185s > addline(g13, 0, 1, which = 1, plines.col = "red") 185s > addline(g13, 0, 1, which = 2, plines.col = "red") 185s > addline(g13, 0, 1, which = 1:2, plines.col = "red") 185s > addline(g13, 0, 1, plines.col = "red") 185s > addline(g13, h = 1, plines.col = "red") 185s > addline(g13, h = c(1, -1), plines.col = "red") 186s > addline(g13, v = c(-1, 1), plines.col = "red") 186s > addline(g13, v = c(-1, 1), plines.col = 2:3) 186s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1:2, plines.col = "red") 186s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1, plines.col = "red") 186s > addline(g13, 0.7, 0.2, which = 1, plines.col = "red") 186s > addline(g13, 0.7, -0.5, which = 1, plines.col = "red") 186s > 186s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 186s > fac2 <- factor(xy2$x > 0) 186s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 186s > addline(g9, 1, 0, "A", plines.col = "red", plabels.cex = 2) 186s Warning messages: 186s 1: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 186s NAs introduced by coercion 186s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col ="red", which = 1:2) 186s 2: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 186s NAs introduced by coercion 186s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col = c("green4", "red")) 186s > 186s > # on a ADEgS: facets 186s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 186s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 186s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 186s > addline(g10, 0, c(0.5, -0.5), plines.col = 1:4) 186s > 186s > 186s > ############################## addpoint ############################## 186s > # on a 2D plot 186s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", 186s + paxes.draw = TRUE, plot = FALSE) 186s > addpoint(g11, 2, 2, ppoints.col = "coral", ppoints.pch = "*", ppoints.cex = 4) 186s > addpoint(g11, c(1, 2), c(1, 2), ppoints.col = "brown2") 186s > addpoint(g11, 1, c(1, 2), ppoints.col = "cyan3") 186s > 186s > # on a 1D plot 186s > g12 <- s1d.density(rnorm(1000), paxes.draw = TRUE, plot = FALSE) 186s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 186s > 186s > g12 <- s1d.density(rnorm(1000), plot = FALSE, ylab = "y axis label") 186s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 186s > 186s > # on a ADEgS: juxtaposition 186s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 186s > addpoint(g13, 2, 2, which = 1, ppoints.col = "cyan3") 187s > addpoint(g13, 2, 2, which = 2, ppoints.col = "cyan3") 187s > addpoint(g13, 2, 2, which = 1:2, ppoints.col = "cyan3") 187s > addpoint(g13, 2, 2, ppoints.col = "cyan3") 187s > addpoint(g13, c(1, 2), 2, ppoints.col = "cyan3") 187s > addpoint(g13, 2, c(1, 2), ppoints.col = "cyan3") 187s > 187s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 187s > fac2 <- factor(xy2$x > 0) 187s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 187s > addpoint(g9, 1, 0, ppoints.col = "red", ppoints.cex = 2) 187s > addpoint(g9, c(1, -1), 0, ppoints.col = "red", ppoints.cex = 2) 187s > addpoint(g9, 0, c(1, -1), ppoints.col = "red", ppoints.cex = 2) 187s > 187s > # on a ADEgS: facets 187s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 187s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 187s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 187s > addpoint(g10, 0, c(0.5, -0.5), ppoints.col = 1:4, ppoints.cex = 3) 187s > 187s > 187s > ############################## addsegment ############################## 187s > # on a 2D plot 187s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), paxes.draw = TRUE, plot = FALSE) 187s > addsegment(g11, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 187s > addsegment(g11, c(0, 1), 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 188s > addsegment(g11, c(0, 1), 2, c(0, 1), -2, plines = list(col = c("cyan3", "brown2"), lwd = 3, lty = 2)) 188s > addsegment(g11, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 188s > addsegment(g11, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 188s > 188s > g12 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", plot = FALSE) 188s > addsegment(g12, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 188s > addsegment(g12, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 188s > addsegment(g12, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 188s > 188s > # on a 1D plot 188s > g13 <- s1d.density(rnorm(1000), paxes.draw = TRUE, ylab = "ylab", plot = FALSE) 188s > addsegment(g13, 2, 0, 2, 0.2, plines.col = 1, plines.lwd = 3) 188s > 188s > # on a ADEgS: juxtaposition 188s > g14 <- ADEgS(c(g11, g11), plot = FALSE) 188s > addsegment(g14, 1, 2, 1, -2, which = 1, plines.col = "brown2") 188s > addsegment(g14, 1, 2, 1, -2, which = 2, plines.col = "brown2") 188s > addsegment(g14, c(0, 1), 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 188s > addsegment(g14, 1, 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 188s > addsegment(g14, 1, 2, 1, -2, plines.col = "brown2") 188s > 188s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 188s > fac2 <- factor(xy2$x > 0) 188s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 188s > addsegment(g9, 1, 0, 1, 0.5, plines.col = "red", plines.lwd = 2) 188s > addsegment(g9, 1, -1, 0, 1, plines.col = "red", plines.lwd = 2) 188s > addsegment(g9, 0, 1, -1, 1, plines.col = "red", plines.lwd = 2) 188s > 188s > # on a ADEgS: facets 188s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 188s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 188s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 188s > addsegment(g10, c(-0.5, 0.5), c(0.5, -0.5), c(-0.5, 0.5), 1, plines.col = 1:4, plines.lwd = 3) 188s > 189s 189s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 189s Copyright (C) 2025 The R Foundation for Statistical Computing 189s Platform: x86_64-pc-linux-gnu 189s 189s R is free software and comes with ABSOLUTELY NO WARRANTY. 189s You are welcome to redistribute it under certain conditions. 189s Type 'license()' or 'licence()' for distribution details. 189s 189s R is a collaborative project with many contributors. 189s Type 'contributors()' for more information and 189s 'citation()' on how to cite R or R packages in publications. 189s 189s Type 'demo()' for some demos, 'help()' for on-line help, or 189s 'help.start()' for an HTML browser interface to help. 189s Type 'q()' to quit R. 189s 189s > ## delete/remove this file when 'scatter' functions will be removed in ade4 189s > 189s > library(adegraphics) 189s Registered S3 methods overwritten by 'adegraphics': 189s method from 189s biplot.dudi ade4 189s kplot.foucart ade4 189s kplot.mcoa ade4 189s kplot.mfa ade4 189s kplot.pta ade4 189s kplot.sepan ade4 189s kplot.statis ade4 189s scatter.coa ade4 189s scatter.dudi ade4 189s scatter.nipals ade4 189s scatter.pco ade4 189s score.acm ade4 189s score.mix ade4 189s score.pca ade4 189s screeplot.dudi ade4 189s > pdf("ade4-functions.pdf") 189s > 189s > ##################### scatter.dudi 189s > data(deug, package = "ade4") 189s > dd1 <- ade4::dudi.pca(deug$tab, scannf = FALSE, nf = 4) 189s > scatter(dd1, posieig = "bottomright") 189s > scatter(dd1, posieig = "bottomright", plot = T, prop = TRUE) 189s > scatter(dd1, posieig = "none", plot = T) 190s > scatter(dd1, posieig = "bottomleft", plot = T) 190s > scatter(dd1, posieig = "topright", plot = T) 190s > scatter(dd1, posieig = "topleft", plot = T, eig.col = c("white", "blue", "red")) 190s > 190s > data(rhone, package = "ade4") 190s > dd1 <- ade4::dudi.pca(rhone$tab, nf = 4, scannf = FALSE) 190s > g1 <- scatter(dd1, sub = "Principal component analysis", row = list(plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 190s > g1[2, drop = TRUE] 190s > scatter(dd1, row = list(sub = "Principal component analysis", plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 190s > scatter(dd1, prop = TRUE, ppoints.cex = 0.2, density.plot = TRUE, row = list(threshold = 0.01)) 191s > 191s > scatter(dd1, posieig = "none") 191s > scatter(dd1, posieig = "bottomright") 191s > scatter(dd1, posieig = c(0.5, 0.5)) 191s > scatter(dd1, posieig = c(0.5, 0.5, 1, 1)) 191s > 191s > 191s > ##################### scatter.coa 191s > data(housetasks, package = "ade4") 191s > par(mfrow = c(2, 2)) 191s > dd2 <- ade4::dudi.coa(housetasks, scan = FALSE) 191s > ade4::scatter(dd2, method = 1, sub = "1 / Standard", posieig = "none") 191s > ade4::scatter(dd2, method = 2, sub = "2 / Columns -> averaging -> Rows", posieig = "none") 191s > ade4::scatter(dd2, method = 3, sub = "3 / Rows -> averaging -> Columns ", posieig = "none") 191s > par(mfrow = c(1, 1)) 191s > 191s > g1 <- scatter(dd2, method = 1, row.sub = "1 / Standard", posieig = "none", plot = FALSE) 191s > g2 <- scatter(dd2, method = 2, col.sub = "2 / Columns -> averaging -> Rows", posieig = "none", plot = FALSE) 192s > g3 <- scatter(dd2, method = 3, row.sub = "3 / Rows -> averaging -> Columns ", posieig = "none", plot = FALSE) 192s > G <- ADEgS(list(g1, g2, g3), layout = c(2, 2), plot = TRUE) 192s > 192s > scatter(dd2, posieig = "none") 192s > scatter(dd2, posieig = "bottomright") 192s > scatter(dd2, posieig = c(0.5, 0.5)) 192s > scatter(dd2, posieig = c(0.5, 0.5, 1, 1)) 192s > 192s > 192s > ##################### scatter.pco 192s > data(yanomama, package = "ade4") 192s > gen <- ade4::quasieuclid(as.dist(yanomama$gen)) 192s > gen1 <- ade4::dudi.pco(gen, scann = FALSE, nf = 3) 192s > scatter(gen1, posieig = "none") 192s > scatter(gen1, posieig = "bottomri") 192s > scatter(gen1, posieig = c(0.5, 0.5)) 192s > scatter(gen1, posieig = c(0.5, 0.5, 1, 1)) 192s > 192s > 192s > ##################### scatter.nipals 192s > data(doubs, package = "ade4") 192s > acp1 <- ade4::dudi.pca(doubs$env, scannf = FALSE, nf = 2) 192s > nip1 <- ade4::nipals(doubs$env) 193s > scatter(nip1, posieig = "none") 193s > scatter(nip1, posieig = "bottomri") 193s > scatter(nip1, posieig = c(0.5, 0.5)) 193s > scatter(nip1, posieig = c(0.5, 0.5, 1, 1)) 193s > 193s > 193s > ##################### score.inertia - plot.inertia 193s > data(housetasks, package = "ade4") 193s > coa2 <- ade4::dudi.coa(housetasks, scann = FALSE) 193s > res21 <- ade4::inertia(coa2, row = TRUE, col = FALSE) 193s > plot(res21, posieig = "none") 194s > plot(res21, posieig = "bottomri") 194s > plot(res21, posieig = c(0.5,0.5)) 194s > plot(res21, posieig = c(0.5, 0.5, 1, 1)) 194s > score(res21, posieig = "none") 194s > score(res21, posieig = "bottomri") 194s > score(res21, posieig = c(0.5, 0.5)) 194s > score(res21, posieig = c(0.5, 0.5, 1, 1)) 194s > 194s > res22 <- ade4::inertia(coa2, row = FALSE, col = TRUE) 194s > plot(res22, posieig = "none") 194s > plot(res22, posieig = "bottomri") 194s > plot(res22, posieig = c(0.5, 0.5)) 194s > plot(res22, posieig = c(0.5, 0.5, 1, 1)) 194s > score(res22, posieig = "none") 194s > score(res22, posieig = "bottomri") 194s > score(res22, posieig = c(0.5, 0.5)) 195s > score(res22, posieig = c(0.5, 0.5, 1, 1)) 195s > 195s > res23 <- ade4::inertia(coa2, row = TRUE, col = TRUE) 195s > plot(res23, posieig = "none") 195s > plot(res23, posieig = "bottomri") 195s > plot(res23, posieig = c(0.5, 0.5)) 195s > plot(res23, posieig = c(0.5, 0.5, 1, 1)) 195s > score(res23, posieig = "none") 195s > score(res23, posieig = "bottomri") 195s > score(res23, posieig = c(0.5, 0.5)) 195s > score(res23, posieig = c(0.5, 0.5, 2, 2)) 195s > 195s > data(doubs, package = "ade4") 195s > afc <- ade4::dudi.coa(doubs$fish, scannf = FALSE, nf = 5) 195s > ic <- ade4::inertia.dudi(afc, row.inertia=TRUE, col.inertia=TRUE) 195s > plot(ic, contrib = "abs", threshold = 0.1, type = "label") 196s > plot(ic, contrib="abs", threshold = 0.1, type = "label", xax = 3, yax = 4) 196s > 196s > 196s > ##################### plot.acm 196s > data(lascaux, package = "ade4") 196s > 196s > acm1 <- ade4::dudi.acm(lascaux$ornem, sca = FALSE) 196s > p1 <- proc.time() 196s > ade4::scatter(acm1) 196s > Tade4 <- proc.time() - p1 196s > 196s > p2 <- proc.time() 196s > plot(acm1, ppoints.cex = 0.3, plot = T) 196s > Tadegraphics <- proc.time() - p2 196s > ## faster calculus, longest display than for ade4 196s > 196s > 196s > ##################### plot.fca 196s > data(coleo, package = "ade4") 196s > coleo.fuzzy <- ade4::prep.fuzzy.var(coleo$tab, coleo$col.blocks) 196s 2 missing data found in block 1 196s 1 missing data found in block 3 196s 2 missing data found in block 4 196s > 196s > fca1 <- ade4::dudi.fca(coleo.fuzzy, scannf = FALSE, nf = 3) 196s > ade4::scatter(fca1) 196s > plot(fca1) 197s > 197s 197s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 197s Copyright (C) 2025 The R Foundation for Statistical Computing 197s Platform: x86_64-pc-linux-gnu 197s 197s R is free software and comes with ABSOLUTELY NO WARRANTY. 197s You are welcome to redistribute it under certain conditions. 197s Type 'license()' or 'licence()' for distribution details. 197s 197s R is a collaborative project with many contributors. 197s Type 'contributors()' for more information and 197s 'citation()' on how to cite R or R packages in publications. 197s 197s Type 'demo()' for some demos, 'help()' for on-line help, or 197s 'help.start()' for an HTML browser interface to help. 197s Type 'q()' to quit R. 197s 197s > library(adegraphics) 197s Registered S3 methods overwritten by 'adegraphics': 197s method from 197s biplot.dudi ade4 197s kplot.foucart ade4 197s kplot.mcoa ade4 197s kplot.mfa ade4 197s kplot.pta ade4 197s kplot.sepan ade4 197s kplot.statis ade4 197s scatter.coa ade4 197s scatter.dudi ade4 197s scatter.nipals ade4 197s scatter.pco ade4 197s score.acm ade4 197s score.mix ade4 197s score.pca ade4 197s screeplot.dudi ade4 197s > pdf("adegraphics.pdf") 197s > 197s > xy <- cbind.data.frame(runif(7), runif(7)) 197s > g1 <- s.label(xy) 197s > 197s > data(olympic, package = "ade4") 197s > pca <- ade4::dudi.pca(olympic$tab, scan = FALSE) 197s > g2 <- s.corcircle(pca$co, lab = names(olympic$tab)) 197s > 197s > g3 <- ADEgS(list(g1, g2), rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 197s > g4 <- ADEgS(list(g1, g2), layout = c(1, 2)) ## the same as g3 197s > g4b <- ADEgS(list(g1, g2)) ## the same as g3 197s > g5 <- s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red") 197s > 197s > g6 <- superpose(g1, g5, plot = TRUE) 197s > g6b <- s.density(xy) 198s > g7 <- superpose(s.density(xy), g5, plot = TRUE) 198s > 198s > g8 <- superpose(s.label(xy, plabels.boxes.col = "orange", plot = FALSE), 198s + s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red", plot = FALSE), 198s + plot = TRUE) 198s > 198s > g9 <- g8[1, drop = TRUE] 198s > class(g9) 198s [1] "S2.label" 198s attr(,"package") 198s [1] "adegraphics" 198s > g10 <- g8[1, drop = FALSE] 198s > class(g10) 198s [1] "ADEgS" 198s attr(,"package") 198s [1] "adegraphics" 198s > 198s > g11 <- ADEgS(list(g8, g3), positions = rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 198s > 198s > ## cbindADEgS - rbindADEgS 198s > g12 <- cbindADEg(g1, g2, plot = TRUE) ## the same as g3 198s > g13 <- cbindADEg(g8, g3, plot = TRUE) ## the same as g11 198s > g14 <- rbindADEg(g8, g3, plot = TRUE) 198s > 198s > data(banque, package = "ade4") 198s > banque.acm <- ade4::dudi.acm(banque, scann = FALSE, nf = 3) 199s > g15 <- score(banque.acm, which = which(banque.acm$cr[, 1] > 0.2), plot = FALSE) 199s > g15 <- g15[[1]] 199s > cbindADEg(g15[[1]], g15[[2]], plot = TRUE) ## work on trellis object 199s > 199s > 199s 199s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 199s Copyright (C) 2025 The R Foundation for Statistical Computing 199s Platform: x86_64-pc-linux-gnu 199s 199s R is free software and comes with ABSOLUTELY NO WARRANTY. 199s You are welcome to redistribute it under certain conditions. 199s Type 'license()' or 'licence()' for distribution details. 199s 199s R is a collaborative project with many contributors. 199s Type 'contributors()' for more information and 199s 'citation()' on how to cite R or R packages in publications. 199s 199s Type 'demo()' for some demos, 'help()' for on-line help, or 199s 'help.start()' for an HTML browser interface to help. 199s Type 'q()' to quit R. 199s 199s > library(ade4) 199s > library(adegraphics) 199s Registered S3 methods overwritten by 'adegraphics': 199s method from 199s biplot.dudi ade4 199s kplot.foucart ade4 199s kplot.mcoa ade4 199s kplot.mfa ade4 199s kplot.pta ade4 199s kplot.sepan ade4 199s kplot.statis ade4 199s scatter.coa ade4 199s scatter.dudi ade4 199s scatter.nipals ade4 199s scatter.pco ade4 199s score.acm ade4 199s score.mix ade4 199s score.pca ade4 199s screeplot.dudi ade4 199s 199s Attaching package: 'adegraphics' 199s 199s The following objects are masked from 'package:ade4': 199s 199s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 199s s.label, s.logo, s.match, s.traject, s.value, table.value, 199s triangle.class 199s 199s > library(sp) 199s > library(lattice) 199s > 199s > pdf("nbgraph.pdf") 199s Loading required package: spdep 199s > 199s > if(require(spdep)) { 199s + data(elec88, package = "ade4") 199s + coords <- sp::coordinates(elec88$Spatial) 199s + 199s + xyplot(coords[, 2] ~ coords[, 1], 199s + panel = function(...) {adeg.panel.nb(elec88$nb, coords)}) 199s + 199s + g1 <- s.label(coords, nb = elec88$nb, porigin.include = F, plabels.cex = 0.7, 199s + ppoints.cex = 2, Sp = elec88$Spatial, pSp.col = "red", pSp.alpha = 0.5) 199s + } 199s Loading required package: spData 199s To access larger datasets in this package, install the spDataLarge 199s package with: `install.packages('spDataLarge', 199s repos='https://nowosad.github.io/drat/', type='source')` 199s Loading required package: sf 199s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 199s 199s Attaching package: 'spdep' 199s 199s The following object is masked from 'package:ade4': 199s 199s mstree 199s 200s > 200s 200s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 200s Copyright (C) 2025 The R Foundation for Statistical Computing 200s Platform: x86_64-pc-linux-gnu 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > library(ade4) 200s > library(adegraphics) 200s Registered S3 methods overwritten by 'adegraphics': 200s method from 200s biplot.dudi ade4 200s kplot.foucart ade4 200s kplot.mcoa ade4 200s kplot.mfa ade4 200s kplot.pta ade4 200s kplot.sepan ade4 200s kplot.statis ade4 200s scatter.coa ade4 200s scatter.dudi ade4 200s scatter.nipals ade4 200s scatter.pco ade4 200s score.acm ade4 200s score.mix ade4 200s score.pca ade4 200s screeplot.dudi ade4 200s 200s Attaching package: 'adegraphics' 200s 200s The following objects are masked from 'package:ade4': 200s 200s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 200s s.label, s.logo, s.match, s.traject, s.value, table.value, 200s triangle.class 200s 200s > library(sp) 200s > pdf("panelSpatial.pdf") 200s > 200s > ## ex1 200s > data(mafragh, package = "ade4") 200s > dfxy1 <- coordinates(mafragh$Spatial) 200s > g1 <- s.label(dfxy1, Sp = mafragh$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(97), pgrid.draw = FALSE, plabels.cex = 0) 200s > 200s > 200s > ## ex2 200s > data(meuse, package = "sp") 200s > coordinates(meuse) <- ~ x + y 200s > data(meuse.grid, package = "sp") 200s > m <- SpatialPixelsDataFrame(points = meuse.grid[c("x", "y")], data = meuse.grid) 200s > data(meuse.riv) 200s > meuse.sr <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)), "meuse.riv"))) 200s > 200s > scale1 <- list("SpatialPolygonsRescale", offset = c(179900, 329600), scale = 500, fill = c("transparent", "black"), layout.scale.bar()) 200s > text11 <- list("sp.text", c(179900, 329700), "0") 200s > text21 <- list("sp.text", c(180400, 329700), "500 m") 200s > arrow1 <- list("SpatialPolygonsRescale", offset = c(178750, 332500), scale = 400, layout.north.arrow()) 200s > river <- list("sp.polygons", meuse.sr, fill = "lightblue") 200s > dfxy2 <- as.data.frame(coordinates(meuse)) 200s > g2 <- s.value(dfxy2, z = meuse[, 1]$cadmium, sp.layout = list(scale1, text11, text21, arrow1, river), Sp = m) 200s > 200s > fac <- meuse@data$ffreq 200s > levels(fac)[1] <- "1 in 2 years" 200s > levels(fac)[2] <- "1 in 10 years" 200s > levels(fac)[3] <- "1 in 50 years" 200s > arrow2 <- list("SpatialPolygonsRescale", layout.north.arrow(), offset = c(181750, 330000), scale = 400) 200s > scale2 <- list("SpatialPolygonsRescale", layout.scale.bar(), offset = c(178050, 333600), scale = 500, fill = c("transparent", "black")) 200s > text12 <- list("sp.text", c(178050, 333700), "0") 200s > text22 <- list("sp.text", c(178550, 333700), "500 m") 200s > g3 <- s.class(dfxy2, fac = fac, sp.layout = list(scale2, text12, text22, arrow2, river), starSize = 1, col = c(1, 2, 4), pellipses.col = c(1, 2, 4), 200s + pellipses.alpha = 0.7, plines.lty = 3, psub.text = "Flooding frequency \n near the Meuse river", psub.pos = c(0.2, 0.88), pgrid.text.cex = 0, 200s + porigin.include = FALSE, Sp = meuse.sr) 200s > 200s > ## ex3 200s > if(require(Guerry)) { 200s + data(gfrance85) 200s + 200s + dfxy4 <- coordinates(gfrance85) 200s + region.names <- data.frame(gfrance85)[, 5] 200s + col.region <- colors()[c(149, 254, 468, 552, 26)] 200s + g4 <- s.class(dfxy4, region.names, ellip = 0, star = 0, col = col.region, Sp = gfrance85, pSp.col = col.region[region.names], porig.inclu = F) 200s + } 200s Loading required package: Guerry 201s > 201s > ## ex4 201s > library(sp) 201s > library(lattice) 201s > 201s > data(elec88, package = "ade4") 201s > sp <- elec88$Spatial 201s > 201s > g5 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "black")}) 201s > g6 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(sp, col = 1:14, border = "black")}) 201s > g7 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], aspect = "iso", panel = function(...) {sp.polygons(sp, col = "black", fill = 1:5)}) 201s > g8 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 201s > g9 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 201s > #g10 <- s.label(cbind(-80, 35), Sp = nc) 201s > #g11 <- s.label(cbind(-80, 35), Sp = sp) 201s > 201s > 201s > ## ex5 201s > data(jv73, package = "ade4") 201s > g12 <- s.label(jv73$xy, Sp = jv73$Spatial) 201s > g13 <- s.label(jv73$xy, Sp = jv73$Spatial, pSp.col = "red") 201s > 201s > spoints <- SpatialPoints(jv73$xy) 201s > g14 <- s.label(jv73$xy, Sp = spoints, plab.cex = 0, ppoin.cex = 0, pSp.col = 1) 201s > 201s > sgrid <- SpatialGrid(GridTopology(c(0, 0), c(1, 1), c(3, 5))) 201s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(sgrid, col = 1:2)) 201s > 201s > nc <- SpatialGridDataFrame(getGridTopology(sgrid), data = data.frame(matrix(1:15, ncol = 1))) 201s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(nc, col = 1, at = pretty(rnorm(15), 2), col.region = 2:3)) 201s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:3)) 201s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:2)) 201s > 201s > 201s > ## ex6 201s > mysp <- SpatialPointsDataFrame(matrix(rnorm(20), 10), data.frame(matrix(rnorm(20), 10))) 201s > s.Spatial(mysp) 201s > s.Spatial(mysp, col = c("red", "blue")) 201s > s.Spatial(mysp, ppoints.cex = 2) 201s > s.Spatial(mysp, ppoints.alpha = 0.5) 201s > s.Spatial(mysp, symbol = "circle") 201s > s.Spatial(mysp, method = "color", ppalette.quanti = colorRampPalette(c("red", "white", "blue"))) 201s > 201s 201s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 201s Copyright (C) 2025 The R Foundation for Statistical Computing 201s Platform: x86_64-pc-linux-gnu 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 201s > library(ade4) 201s > library(adegraphics) 202s Registered S3 methods overwritten by 'adegraphics': 202s method from 202s biplot.dudi ade4 202s kplot.foucart ade4 202s kplot.mcoa ade4 202s kplot.mfa ade4 202s kplot.pta ade4 202s kplot.sepan ade4 202s kplot.statis ade4 202s scatter.coa ade4 202s scatter.dudi ade4 202s scatter.nipals ade4 202s scatter.pco ade4 202s score.acm ade4 202s score.mix ade4 202s score.pca ade4 202s screeplot.dudi ade4 202s > 202s Attaching package: 'adegraphics' 202s 202s The following objects are masked from 'package:ade4': 202s 202s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 202s s.label, s.logo, s.match, s.traject, s.value, table.value, 202s triangle.class 202s 202s pdf("parameter.pdf") 202s > 202s > adegparold <- adegpar() 202s > b1 <- length(adegraphics:::separation(plines = list(col = "blue"), plab.bo.dra = FALSE, plab = list(orien = F))$rest) == 0 202s > b2 <- length(adegraphics:::separation(plines = list(col = "blue", lwd = c(1:5)), parr.end = NA, plab.boxes.dr = FALSE)$rest) == 0 202s > b3 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 1)$rest) == 2 202s > b4 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 0)$rest) == 2 202s > b5 <- length(adegraphics:::separation()) == 2 202s > b6 <- length(adegraphics:::separation(par.sub.text = list("lineheight" = 5), pattern = 1)$rest) == 0 202s > b7 <- names(adegraphics:::separation(toto = "rienavoir!")$rest) == "toto" 202s > b8 <- names(adegraphics:::separation(toto = "rienavoir!", pattern = 1)$rest) == "toto" 202s > 202s > l1 <- list(parrow = list(col = "blue", lwd = c(1:5), end = NA), plboxes.draw = FALSE, pattern = 1) 202s > sep1 <- adegraphics:::separation(l1) ## no recognition of "pattern" in a list 202s > 202s > l2 <- list("parrow.lwd", "plboxes.draw") 202s > sep2 <- adegraphics:::separation(l2) 202s > 202s > sep3 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col")) 202s > sep4 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col" = 2)) 202s > sep5 <- adegraphics:::separation(pla.box = list(col = 1:5)) 202s > sep6 <- adegraphics:::separation(pla.box.col = c(1:5)) 202s > sep7 <- adegraphics:::separation(pla = list(box.col = 1:5)) ## don't match 202s > 202s > 202s > ## adegpar test 202s > ad1 <- adegpar() 202s > ad2 <- adegpar("paxes.draw") 202s > ad3 <- adegpar("paxes.draw", "psub.cex") 202s > 202s > ad4 <- adegpar("psub.cex" = 5) 202s > ad5 <- adegpar("psub.cex" = 5, paxes.draw = FALSE) 202s > ad6 <- adegpar("psub") 202s > ad7 <- adegpar("psub.cex", "plabe.boxes") 202s > 202s > ad8 <- adegpar(ppoints = list(col = "yellow"), pgrid.space = 4, plines = list(lwd = c(1:5))) 202s > ad9 <- adegpar(ppoints = list(col = "red"), pgrid = list(nint = 12), plines = list(lwd = c(1:5))) 202s > ad10 <- adegpar("ppoints.col", "pgrid.nint", "plines") 202s > 202s > ad11 <- adegpar(paxes = list("x"), pgrid = list("nint", "col")) 202s > ad12 <- adegpar(list(pellip = list(col = "red"), grid.nint = 8, plines = list(lwd = c(1:5)))) 202s > ad13 <- adegpar(paxes = list("x"), pgrid = list("nint", "col"), "plines", "pellipse") 202s > 202s > ad14 <- adegpar(plegend.drawKey = FALSE) 202s > ad15 <- adegpar(list(paxes = list(col = "white"), pgrid.nint = 6, plines = list(lwd = c(1:5)))) 202s > ad16 <- adegpar(paxes = list(x = list(draw = TRUE))) 202s > 202s > adegpar(adegparold) 202s > 202s > ## merging list 202s > l3 <- list(plabels = list(boxes = list(col = "white", alpha = 1)), plabels = list(cex = 2), plabels = list(col = "red")) 202s > adegraphics:::.mergingList(l3) 202s $plabels 202s $plabels$boxes 202s $plabels$boxes$col 202s [1] "white" 202s 202s $plabels$boxes$alpha 202s [1] 1 202s 202s 202s $plabels$cex 202s [1] 2 202s 202s $plabels$col 202s [1] "red" 202s 202s 202s > adegraphics:::.mergingList(list(plabels = list(cex = 3))) 202s $plabels 202s $plabels$cex 202s [1] 3 202s 202s 202s > 202s > 202s > ## update parameters in graphics 202s > cha <- rep(LETTERS, length.out = 100) 202s > xy <- cbind.data.frame(runif(length(cha)), runif(length(cha))) 202s > g1 <- s.label(xy, labels = cha, paxes.draw = TRUE, plabels.cex = runif(length(cha), 0.5, 1.5)) 202s > update(g1, paxes = list(aspect = "fill", draw = TRUE, x = list(draw = FALSE)), 202s + pgrid = list(col = "black", lwd = 2, lty = 5), 202s + plabels = list(col = 1:4, alpha = 0.5, cex = 2, boxes = list(border = "blue", col = "antiquewhite", alpha = 0.2, lwd = 2.5, lty = 5))) 202s > 202s > g2 <- s.label(xy, labels = cha) 202s > update(g2, paxes.draw = FALSE, pgrid = list(col = "blue", lwd = 2, lty = 5, text = list(pos = "bottomright", cex = 2, col = "green"))) 202s > update(g2, porigin = list(alpha = 0.5, col = "red", lty = 5 , lwd = 2, origin = c(0.6, 0.1)), pgrid.lwd = 0.5) 202s > update(g2, psub = list(text = "parameters", cex = 2, col = "red", position = "topright")) 202s > update(g2, plabels.cex = 0, ppoints = list(alpha = 0.4, cex = 2, col = "red", fill = "blue", pch = 21)) 202s > 202s > 202s > ## from tdr641 202s > data(doubs, package = "ade4") 202s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scannf = F, nf = 3) 202s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scannf = F, nf = 2) 202s > coin1 <- ade4::coinertia(dudi1, dudi2, scannf = F, nf = 2) 202s > g3 <- s.arrow(coin1$l1, plabels.cex = .87) 202s > update(g3, plines = list(col = "blue", lwd = 2, lty = 3), parr.end = "both", parr = list(angle = 25, length = 0.5)) 202s > 202s > ## with spatial object 202s > data(elec88, package = "ade4") 202s > g4 <- s.label(elec88$xy, label = as.character(1:nrow(elec88$xy)), porigin.include = FALSE, Sp = elec88$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(5), pgrid.draw = TRUE) 203s > update(g4, pSp = list(col = "yellow", border = "blue", lwd = 2, lty = 5, alpha = 0.01)) ## don't match : to solve 203s > 203s > ## plabels parameter 203s > data(tortues, package = "ade4") 203s > pturtles <- tortues 203s > names(pturtles) <- c("length", "width", "height", "sex") 203s > sex <- pturtles$sex 203s > sexcol <- ifelse(sex == "M", "blue", "red") 203s > measures <- pturtles[, 1:3] 203s > pca1 <- ade4::dudi.pca(measures, scann = FALSE, nf = 3) 203s > g5 <- scatter(pca1, row.plabel.cex = 0, col.plabel.cex = c(1, 2, 3), posieig = "none", col.plabel.col = c("red", "blue", "green")) 203s > 203s 203s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 203s Copyright (C) 2025 The R Foundation for Statistical Computing 203s Platform: x86_64-pc-linux-gnu 203s 203s R is free software and comes with ABSOLUTELY NO WARRANTY. 203s You are welcome to redistribute it under certain conditions. 203s Type 'license()' or 'licence()' for distribution details. 203s 203s R is a collaborative project with many contributors. 203s Type 'contributors()' for more information and 203s 'citation()' on how to cite R or R packages in publications. 203s 203s Type 'demo()' for some demos, 'help()' for on-line help, or 203s 'help.start()' for an HTML browser interface to help. 203s Type 'q()' to quit R. 203s 203s > library(adegraphics) 203s Registered S3 methods overwritten by 'adegraphics': 203s method from 203s biplot.dudi ade4 203s kplot.foucart ade4 203s kplot.mcoa ade4 203s kplot.mfa ade4 203s kplot.pta ade4 203s kplot.sepan ade4 203s kplot.statis ade4 203s scatter.coa ade4 203s scatter.dudi ade4 203s scatter.nipals ade4 203s scatter.pco ade4 203s score.acm ade4 203s score.mix ade4 203s score.pca ade4 203s screeplot.dudi ade4 203s > pdf("s.arrow.pdf") 203s > 203s > ## ex1 : from tdr641 203s > data(doubs, package = "ade4") 203s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scan = F, nf = 3) 203s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scan = F, nf = 2) 203s > coin1 <- ade4::coinertia(dudi1, dudi2, scan = F, nf = 2) 203s > g1 <- s.arrow(coin1$l1, plabels.cex = 0.87) 204s > g2 <- s.arrow(coin1$c1, plabels.cex = 1) 204s > 204s > ## ex2 : from bs81 204s > data(granulo, package = "ade4") 204s > w <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 204s > g3 <- s.arrow(ade4::dudi.pca(data.frame(w), scan = F, nf = 2)$co) 204s > 204s > wtr <- data.frame(t(w)) 204s > wmoy <- data.frame(matrix(apply(wtr, 1, mean), 1)) 204s > dudi3 <- ade4::dudi.pca(w, scal = FALSE, scan = FALSE) 204s > wmoy <- ade4::suprow(dudi3, wmoy)$lisup 204s > 204s > g4 <- s.arrow(dudi3$c1, plabels.cex = 1.5) 204s > g4 <- s.distri(dudi3$c1, wtr, starSize = 0.33, ellipseSize = 0, add = TRUE, plabels.cex = 1) 204s > g4 <- s.label(wmoy, ppoint.cex = 5, plabels.cex = 0, add = TRUE) 204s > 204s > ## ex3 204s > data(deug, package = "ade4") 204s > pca1 <- ade4::dudi.pca(deug$tab, scal = FALSE, center = deug$cent, scan = FALSE) 204s > g5 <- s.arrow(40 * pca1$c1) 204s > 204s > ## ex4 204s > xy <- cbind(rnorm(50), rnorm(50)) 204s > g6 <- s.arrow(xy, plabels.cex = 0.9, parrows = list(angle = 20)) 204s > 204s 204s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 204s Copyright (C) 2025 The R Foundation for Statistical Computing 204s Platform: x86_64-pc-linux-gnu 204s 204s R is free software and comes with ABSOLUTELY NO WARRANTY. 204s You are welcome to redistribute it under certain conditions. 204s Type 'license()' or 'licence()' for distribution details. 204s 204s R is a collaborative project with many contributors. 204s Type 'contributors()' for more information and 204s 'citation()' on how to cite R or R packages in publications. 204s 204s Type 'demo()' for some demos, 'help()' for on-line help, or 204s 'help.start()' for an HTML browser interface to help. 204s Type 'q()' to quit R. 204s 204s > library(adegraphics) 204s Registered S3 methods overwritten by 'adegraphics': 204s method from 204s biplot.dudi ade4 204s kplot.foucart ade4 204s kplot.mcoa ade4 204s kplot.mfa ade4 204s kplot.pta ade4 204s kplot.sepan ade4 204s kplot.statis ade4 204s scatter.coa ade4 204s scatter.dudi ade4 204s scatter.nipals ade4 204s scatter.pco ade4 204s score.acm ade4 204s score.mix ade4 204s score.pca ade4 204s screeplot.dudi ade4 204s > pdf("s.class.pdf") 204s > 204s > xy0 <- cbind.data.frame(x = runif(20, -1, 1), y = runif(20, -1, 6)) 204s > basic <- s.class(xy0, fac = factor(rep(c("A", "B"), le = 20)), chull = 0, star = 0) 204s > 204s > xy1 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 6)) 204s > fac1 <- factor(xy1$x > 0) : factor(xy1$y > 0) 204s > g1 <- s.class(xy1, fac = fac1, storeData = F, col = 1:4, pbackground.box = T, pbackground.col = grey(0.85), paxes.draw = T, ell = 0) 204s > 204s > ## multiaxis 204s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, .5)) 204s > fac2 <- factor(xy2$x > 0) 204s > g2 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, storeData = F, plot = F) 204s > print(g2) 204s > 204s > ## insertion 204s > print(ADEgS(list(g1, g2), posi = rbind(c(0, 0, 1, 1), c(0.7, 0.5, 1, 0.9)))) 205s > 205s > ## color test 205s > g3 <- s.class(xy1, fac = fac2, psub.text = "Graphic 3", "ppoints.col" = 1:5, plabels.boxes = list(col = "white", alpha = 0.8), pellipses.col = 1:5, col = 1:5) 205s > 205s > ## test convex hull and parameters 205s > xy4 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 205s > fac4 <- factor(xy4$x > 0) : factor(xy4$y > 0) 205s > col <- c("black", "red", "green", "blue") 205s > g4 <- s.class(xy4, fac4, ppoints.cex = 1.5, chull = T, ellipseSize = 0, starSize = 0, ppolygon = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4)) 205s > 205s > 205s 205s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 205s Copyright (C) 2025 The R Foundation for Statistical Computing 205s Platform: x86_64-pc-linux-gnu 205s 205s R is free software and comes with ABSOLUTELY NO WARRANTY. 205s You are welcome to redistribute it under certain conditions. 205s Type 'license()' or 'licence()' for distribution details. 205s 205s R is a collaborative project with many contributors. 205s Type 'contributors()' for more information and 205s 'citation()' on how to cite R or R packages in publications. 205s 205s Type 'demo()' for some demos, 'help()' for on-line help, or 205s 'help.start()' for an HTML browser interface to help. 205s Type 'q()' to quit R. 205s 205s > library(adegraphics) 205s Registered S3 methods overwritten by 'adegraphics': 205s method from 205s biplot.dudi ade4 205s kplot.foucart ade4 205s kplot.mcoa ade4 205s kplot.mfa ade4 205s kplot.pta ade4 205s kplot.sepan ade4 205s kplot.statis ade4 205s scatter.coa ade4 205s scatter.dudi ade4 205s scatter.nipals ade4 205s scatter.pco ade4 205s score.acm ade4 205s score.mix ade4 205s score.pca ade4 205s screeplot.dudi ade4 205s > pdf("s.corcircle.pdf") 205s > data(olympic, package = "ade4") 205s > 205s > dudi1 <- ade4::dudi.pca(olympic$tab, scan = FALSE) # a normed PCA 205s > g1 <- s.corcircle(dudi1$co, lab = names(olympic$tab)) 205s > 205s > g2 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = T) 205s > g3 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = FALSE) 205s > g4 <- s.corcircle(dudi1$co, lab = names(olympic$tab), pback.col = "red", pbackground.box = FALSE) 205s > 205s 205s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 205s Copyright (C) 2025 The R Foundation for Statistical Computing 205s Platform: x86_64-pc-linux-gnu 205s 205s R is free software and comes with ABSOLUTELY NO WARRANTY. 205s You are welcome to redistribute it under certain conditions. 205s Type 'license()' or 'licence()' for distribution details. 205s 205s R is a collaborative project with many contributors. 205s Type 'contributors()' for more information and 205s 'citation()' on how to cite R or R packages in publications. 205s 205s Type 'demo()' for some demos, 'help()' for on-line help, or 205s 'help.start()' for an HTML browser interface to help. 205s Type 'q()' to quit R. 205s 205s > library(adegraphics) 206s Registered S3 methods overwritten by 'adegraphics': 206s method from 206s biplot.dudi ade4 206s kplot.foucart ade4 206s kplot.mcoa ade4 206s kplot.mfa ade4 206s kplot.pta ade4 206s kplot.sepan ade4 206s kplot.statis ade4 206s scatter.coa ade4 206s scatter.dudi ade4 206s scatter.nipals ade4 206s scatter.pco ade4 206s score.acm ade4 206s score.mix ade4 206s score.pca ade4 206s screeplot.dudi ade4 206s > pdf("s.density.pdf") 206s > 206s > xx1 <- rnorm(1000, 1, 2) 206s > yy1 <- rnorm(1000, 1, 2) 206s > 206s > g1 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(40, 40)) 206s > g2 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(80, 80), col = colorRampPalette(c("red", "blue"))(58), storeData = FALSE, region = TRUE) 206s > g3 <- s.density(cbind(yy1 + 3, xx1 + 3), gridsize = c(400, 400)) 206s > g4 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(200, 200), add = TRUE) 206s > g5 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(200, 200), region = TRUE, contour = TRUE, plabels.cex = 1, plabels.srt = "vertial") 206s > g6 <- s.density(cbind(rnorm(300, 3, 0.3), rnorm(300, -2, 0.5)), gridsize = c(500, 500), thres = 0.01, nr = 10, regions = list(alpha = 0.5), col = colorRampPalette(c("red", "blue"))(108)) 207s > g7 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(100, 100), region = TRUE, contour = TRUE, plabels.cex = 1, nclass = 5) 207s > 207s 207s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 207s Copyright (C) 2025 The R Foundation for Statistical Computing 207s Platform: x86_64-pc-linux-gnu 207s 207s R is free software and comes with ABSOLUTELY NO WARRANTY. 207s You are welcome to redistribute it under certain conditions. 207s Type 'license()' or 'licence()' for distribution details. 207s 207s R is a collaborative project with many contributors. 207s Type 'contributors()' for more information and 207s 'citation()' on how to cite R or R packages in publications. 207s 207s Type 'demo()' for some demos, 'help()' for on-line help, or 207s 'help.start()' for an HTML browser interface to help. 207s Type 'q()' to quit R. 207s 207s > library(adegraphics) 208s Registered S3 methods overwritten by 'adegraphics': 208s method from 208s biplot.dudi ade4 208s kplot.foucart ade4 208s kplot.mcoa ade4 208s kplot.mfa ade4 208s kplot.pta ade4 208s kplot.sepan ade4 208s kplot.statis ade4 208s scatter.coa ade4 208s scatter.dudi ade4 208s scatter.nipals ade4 208s scatter.pco ade4 208s score.acm ade4 208s score.mix ade4 208s score.pca ade4 208s screeplot.dudi ade4 208s > pdf("s.distri.pdf") 208s > 208s > xy5 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 208s > w1 <- as.numeric((xy5$x > 0) & (xy5$y > 0)) 208s > w2 <- ((xy5$x > 0) & (xy5$y < 0)) * (1 - xy5$y) * xy5$x 208s > w3 <- ((xy5$x < 0) & (xy5$y > 0)) * (1 - xy5$x) * xy5$y 208s > w4 <- ((xy5$x < 0) & (xy5$y < 0)) * xy5$y * xy5$x 208s > distri <- data.frame(a = w1 / sum(w1), b = w2 / sum(w2), c = w3 / sum(w3), d = w4 / sum(w4)) 208s > g5 <- s.distri(xy5, distri, plabels.boxes = list(col = "white", alpha = 1), plabels.cex = 2, plabels.col = 1:5) 208s > 208s > data(rpjdl, package = "ade4") 208s > xy6 <- ade4::dudi.coa(rpjdl$fau, scan = FALSE)$li + 3 208s > g6 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1))) 208s > g7 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin = list(include = FALSE), pellipses.axes.col = "blue") 208s > 208s > ## test add 208s > g8 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "blue")) 208s > g9 <- s.distri(xy6, rpjdl$fau[, 12], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "red"), add = TRUE) 208s > show(g9) ## g8 is a superposition, an ADEgS object 208s > 208s > ## add 208s > index <- c(1, 5, 8, 20, 21, 23, 26, 33, 36, 44, 47, 49) 208s > col <- colorRampPalette(c("blue", "red", "orange"))(49) 208s > s.distri(xy6, rpjdl$fau[, 1], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[1], alpha = 0.3)) 208s > for(i in index[-1]) 208s + s.distri(xy6, rpjdl$fau[, i], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[i], alpha = 0.3), add = TRUE) 208s > 208s > current <- get("currentadeg", env = adegraphics:::.ADEgEnv) 208s > print(current[[6]]) 208s > length(current) == length(index) 208s [1] TRUE 208s > 208s 208s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 208s Copyright (C) 2025 The R Foundation for Statistical Computing 208s Platform: x86_64-pc-linux-gnu 208s 208s R is free software and comes with ABSOLUTELY NO WARRANTY. 208s You are welcome to redistribute it under certain conditions. 208s Type 'license()' or 'licence()' for distribution details. 208s 208s R is a collaborative project with many contributors. 208s Type 'contributors()' for more information and 208s 'citation()' on how to cite R or R packages in publications. 208s 208s Type 'demo()' for some demos, 'help()' for on-line help, or 208s 'help.start()' for an HTML browser interface to help. 208s Type 'q()' to quit R. 208s 208s > library(adegraphics) 209s Registered S3 methods overwritten by 'adegraphics': 209s method from 209s biplot.dudi ade4 209s kplot.foucart ade4 209s kplot.mcoa ade4 209s kplot.mfa ade4 209s kplot.pta ade4 209s kplot.sepan ade4 209s kplot.statis ade4 209s scatter.coa ade4 209s scatter.dudi ade4 209s scatter.nipals ade4 209s scatter.pco ade4 209s score.acm ade4 209s score.mix ade4 209s score.pca ade4 209s screeplot.dudi ade4 209s > library(sp) 209s > pdf("s.image.pdf") 209s > 209s > ## ex1 209s > xy <- data.frame(expand.grid(-3:3, -3:3)) 209s > names(xy) <- c("x", "y") 209s > z <- (1 / sqrt(2)) * exp(-(xy$x ^ 2 + xy$y ^ 2) / 2) 209s > s.image(xy, z) 209s > s.image(xy, z, grid = 20) 209s > s.image(xy, z, grid = 500) 209s > 209s > ## ex2 209s > Sr1 <- Polygon(cbind(c(0, 1, 2, 1, 2, 0 , -2, -1, -2, -1, 0), c(2.5, 1.5, 2, 0, -2, -1, -2, 0, 2, 1.5, 2.5))) 209s > Srs1 <- Polygons(list(Sr1), ID = "stars") 209s > SPp1 <- SpatialPolygons(list(Srs1)) 209s > xy1 <- cbind(rnorm(100, 0, 1), rnorm(100, 0, 1.5)) 209s > g1 <- s.image(xy1, runif(100), outsideLimits = SPp1) 209s > 209s > ## ex3 209s > Sr2 <- Polygon(cbind(c(-0.5, 0.5, 0.5, -0.5, -0.5), c(0, 0, 1 ,1, 0)), hole = TRUE) 209s > Srs2 <- Polygons(list(Sr1, Sr2), ID = "hole") 209s > SPp2 <- SpatialPolygons(list(Srs2)) 209s > xy2 <- cbind(c(rnorm(2000, 1, 0.25), rnorm(3000, -1, 1.5)), c(rnorm(2000, 1, 0.5), rnorm(3000, -1, 3))) 209s > z <- c(rnorm(2000, 12, 1), rnorm(3000, 1, 2)) 209s > g2 <- s.image(xy2, z, outsideLimits = SPp2, grid = 500, xlim = c(-2.5, 2.5), ylim = c(-2, 3)) 210s > 210s 210s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 210s Copyright (C) 2025 The R Foundation for Statistical Computing 210s Platform: x86_64-pc-linux-gnu 210s 210s R is free software and comes with ABSOLUTELY NO WARRANTY. 210s You are welcome to redistribute it under certain conditions. 210s Type 'license()' or 'licence()' for distribution details. 210s 210s R is a collaborative project with many contributors. 210s Type 'contributors()' for more information and 210s 'citation()' on how to cite R or R packages in publications. 210s 210s Type 'demo()' for some demos, 'help()' for on-line help, or 210s 'help.start()' for an HTML browser interface to help. 210s Type 'q()' to quit R. 210s 210s > library(adegraphics) 211s Registered S3 methods overwritten by 'adegraphics': 211s method from 211s biplot.dudi ade4 211s kplot.foucart ade4 211s kplot.mcoa ade4 211s kplot.mfa ade4 211s kplot.pta ade4 211s kplot.sepan ade4 211s kplot.statis ade4 211s scatter.coa ade4 211s scatter.dudi ade4 211s scatter.nipals ade4 211s scatter.pco ade4 211s score.acm ade4 211s score.mix ade4 211s score.pca ade4 211s screeplot.dudi ade4 211s > library(grid) 211s > pdf("s.label.pdf") 211s > 211s > x0 <- runif(50, -2, 2) 211s > y0 <- runif(50, -2, 2) 211s > z <- x0 ^ 2 + y0 ^ 2 211s > dfxy1 <- data.frame(x0, y0) 211s > g1 <- s.label(dfxy1, label = as.character(z < 1), paxes.draw = TRUE, axis.text = list(col = "grey")) 211s > g2 <- s.label(dfxy1[1, ]) 211s > g3 <- s.label(dfxy1[1, ], pori.incl = FALSE) 211s > g4 <- s.label(dfxy1, labels = c("", "MM", "", NA, "ooo"), plabels.optim = TRUE) 211s > g5 <- s.label(dfxy1, labels = as.character(z < 1), psub = list(text = "Subtitle", col = "blue", position = "topleft"), plabels.col = 1:5, pgrid.text.pos = c(unit(0.95, "npc"), unit(0.94, "npc"))) 211s > 211s > dfxy2 <- cbind(dfxy1, runif(50, -5, 5)) 211s > g6 <- s.label(dfxy2, xax = 1, yax = 2:3, paxes.draw = TRUE, paxes.aspectratio = 1.5, plabels.cex = 0.8) 211s > 211s > l <- ls() 211s > x1 <- runif(length(l)) 211s > x2 <- runif(100) 211s > y1 <- runif(length(l)) 211s > y2 <- runif(100) 211s > g7 <- s.label(cbind(x2, y2), labels = as.character((x2 * x2 + y2 * y2) < 1)) 211s > g8 <- s.label(cbind(x1, y1), labels = l, add = TRUE, plabels.col = "blue") 211s > 211s 211s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 211s Copyright (C) 2025 The R Foundation for Statistical Computing 211s Platform: x86_64-pc-linux-gnu 211s 211s R is free software and comes with ABSOLUTELY NO WARRANTY. 211s You are welcome to redistribute it under certain conditions. 211s Type 'license()' or 'licence()' for distribution details. 211s 211s R is a collaborative project with many contributors. 211s Type 'contributors()' for more information and 211s 'citation()' on how to cite R or R packages in publications. 211s 211s Type 'demo()' for some demos, 'help()' for on-line help, or 211s 'help.start()' for an HTML browser interface to help. 211s Type 'q()' to quit R. 211s 211s > library(adegraphics) 211s Registered S3 methods overwritten by 'adegraphics': 211s method from 211s biplot.dudi ade4 211s kplot.foucart ade4 211s kplot.mcoa ade4 211s kplot.mfa ade4 211s kplot.pta ade4 211s kplot.sepan ade4 211s kplot.statis ade4 211s scatter.coa ade4 211s scatter.dudi ade4 211s scatter.nipals ade4 211s scatter.pco ade4 211s score.acm ade4 211s score.mix ade4 211s score.pca ade4 211s screeplot.dudi ade4 212s > pdf("s.logo.pdf") 212s > 212s > ## ex1 212s > data(ggtortoises, package = "ade4") 212s > ico <- ggtortoises$ico[as.character(ggtortoises$pop$carap)] 212s > g1 <- s.logo(ggtortoises$pop, ico, pori.incl = FALSE) 212s Loading required namespace: pixmap 212s > g2 <- s.label(ggtortoises$pop, add = TRUE, plabels = list(boxes = list(alpha = 0.4, border = "transparent"))) 212s > 212s > ## ex2 212s > data(capitales, package = "ade4") 212s > index <- unlist(lapply(1:15, function(i) which(names(capitales$logo) == tolower(rownames(capitales$xy)[i]))), use.names = FALSE) 212s > g3 <- s.logo(capitales$xy, capitales$logo[index]) 212s > 212s > x <- c(0, max(capitales$area$x)) 212s > y <- c(0, max(capitales$area$y)) 212s > #g4 <- s.image(cbind(x, y), z = c(1, 2), outsideLimits = capitales$area, grid = 500, regions = list(col = "yellow", alpha = 0.9)) 212s > #s.logo(capitales$xy, capitales$logo[index], add = TRUE) 212s > 212s 212s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 212s Copyright (C) 2025 The R Foundation for Statistical Computing 212s Platform: x86_64-pc-linux-gnu 212s 212s R is free software and comes with ABSOLUTELY NO WARRANTY. 212s You are welcome to redistribute it under certain conditions. 212s Type 'license()' or 'licence()' for distribution details. 212s 212s R is a collaborative project with many contributors. 212s Type 'contributors()' for more information and 212s 'citation()' on how to cite R or R packages in publications. 212s 212s Type 'demo()' for some demos, 'help()' for on-line help, or 212s 'help.start()' for an HTML browser interface to help. 212s Type 'q()' to quit R. 212s 212s > library(adegraphics) 212s Registered S3 methods overwritten by 'adegraphics': 212s method from 212s biplot.dudi ade4 212s kplot.foucart ade4 212s kplot.mcoa ade4 212s kplot.mfa ade4 212s kplot.pta ade4 212s kplot.sepan ade4 212s kplot.statis ade4 212s scatter.coa ade4 212s scatter.dudi ade4 212s scatter.nipals ade4 212s scatter.pco ade4 212s score.acm ade4 212s score.mix ade4 212s score.pca ade4 212s screeplot.dudi ade4 212s > pdf("s.match.pdf") 212s > 212s > X <- data.frame(x = runif(50, -1, 2), y = runif(50, -1, 2)) 212s > Y <- X + rnorm(100, sd = 0.3) 212s > 212s > g1 <- s.match(X, Y, ppoints.cex = 0, col = c("blue", "red")) 212s > g2 <- s.match(X, Y, arr = FALSE, ppoints.cex = 2, ppoints.col = c("blue", "green")) 212s > g3 <- s.match(X, Y, arr = FALSE) 213s > g4 <- s.match(X, Y, arrows = TRUE, plabels = list(alpha = 1, col = "black", cex = 1), plines = list(col = "red"), panel.background = list(col = "antiquewhite")) 213s > 213s 213s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 213s Copyright (C) 2025 The R Foundation for Statistical Computing 213s Platform: x86_64-pc-linux-gnu 213s 213s R is free software and comes with ABSOLUTELY NO WARRANTY. 213s You are welcome to redistribute it under certain conditions. 213s Type 'license()' or 'licence()' for distribution details. 213s 213s R is a collaborative project with many contributors. 213s Type 'contributors()' for more information and 213s 'citation()' on how to cite R or R packages in publications. 213s 213s Type 'demo()' for some demos, 'help()' for on-line help, or 213s 'help.start()' for an HTML browser interface to help. 213s Type 'q()' to quit R. 213s 213s > library(adegraphics) 213s Registered S3 methods overwritten by 'adegraphics': 213s method from 213s biplot.dudi ade4 213s kplot.foucart ade4 213s kplot.mcoa ade4 213s kplot.mfa ade4 213s kplot.pta ade4 213s kplot.sepan ade4 213s kplot.statis ade4 213s scatter.coa ade4 213s scatter.dudi ade4 213s scatter.nipals ade4 213s scatter.pco ade4 213s score.acm ade4 213s score.mix ade4 213s score.pca ade4 213s screeplot.dudi ade4 213s > pdf("s.traject.pdf") 213s > 213s > rw <- function(a){ 213s + x <- 0 213s + for(i in 1:49) 213s + x <- c(x, x[length(x)] + runif(1, -1, 1)) 213s + x 213s + } 213s > 213s > x <- unlist(lapply(1:5, rw), use.names = FALSE) 213s > y <- unlist(lapply(1:5, rw), use.names = FALSE) 213s > z <- gl(5, 50) 213s > g1 <- s.traject(data.frame(x, y), z, ppoints.pch = 19:23, plines.col = rainbow(5)) 213s > 213s > x <- unlist(lapply(1:2, rw), use.names = FALSE) 213s > y <- unlist(lapply(1:2, rw), use.names = FALSE) 213s > z <- gl(2, 50) 213s > g2 <- s.traject(data.frame(x, y), z, ppoints.pch = 21:20, plines.col = 1:2) 213s > 213s 213s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 213s Copyright (C) 2025 The R Foundation for Statistical Computing 213s Platform: x86_64-pc-linux-gnu 213s 213s R is free software and comes with ABSOLUTELY NO WARRANTY. 213s You are welcome to redistribute it under certain conditions. 213s Type 'license()' or 'licence()' for distribution details. 213s 213s R is a collaborative project with many contributors. 213s Type 'contributors()' for more information and 213s 'citation()' on how to cite R or R packages in publications. 213s 213s Type 'demo()' for some demos, 'help()' for on-line help, or 213s 'help.start()' for an HTML browser interface to help. 213s Type 'q()' to quit R. 213s 213s > library(adegraphics) 214s Registered S3 methods overwritten by 'adegraphics': 214s method from 214s biplot.dudi ade4 214s kplot.foucart ade4 214s kplot.mcoa ade4 214s kplot.mfa ade4 214s kplot.pta ade4 214s kplot.sepan ade4 214s kplot.statis ade4 214s scatter.coa ade4 214s scatter.dudi ade4 214s scatter.nipals ade4 214s scatter.pco ade4 214s score.acm ade4 214s score.mix ade4 214s score.pca ade4 214s screeplot.dudi ade4 214s > pdf("s.value.pdf") 214s > 214s > ## ex1 214s > xy <- cbind.data.frame(x = runif(50, -1, 1), y = runif(50, 0, 2)) 214s > z <- rnorm(50) 214s > z <- sapply(z, function(X) max(X, -3)) 214s > z <- sapply(z, function(X) min(X, 3)) 214s > val1 <- s.value(xy, z, method = "size", symbol = "square", plot = F) 214s > val2 <- s.value(xy, z, method = "color", symbol = "square", plot = F) 214s > val3 <- s.value(xy, z, method = "size", symbol = "circle", plot = F) 214s > val4 <- s.value(xy, z, method = "color", symbol = "circle", plot = F) 214s > g1 <- ADEgS(c(val1, val2, val3, val4), positions = layout2position(matrix(c(1, 2, 3, 4), 2, 2)), add = matrix(0, ncol = 4, nrow = 4)) 214s > g2 <- s.value(xy, z, method = "color", symbol = "square", breaks = c(-3, -1, -0.5, 0, 0.5, 1, 3)) 214s > g3 <- s.value(xy, z, method = "color", col = colorRampPalette(c("yellow", "blue"))(6)) 214s > g4 <- s.value(xy, z, method = "size", symbol = "circle", paxes.draw = FALSE) 214s > 214s > ## ex2 214s > xx <- runif(100) * 100 214s > yy <- 1:100 214s > zz <- 1:100 214s > breaks <- c(0, 25, 50, 75, 100) 214s > g5 <- s.value(data.frame(xx, yy), zz, breaks = breaks, method = "color", paxes.draw = TRUE, porigin.include = FALSE) 214s > g6 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), breaks = breaks, method = "color", col = c("blue", "red", "green", "yellow"), paxes.draw = TRUE) 214s > g7 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), nclass = c(2, 6), method = "color", col = c("blue", "red", "pink", "green", "yellow"), paxes.draw = TRUE) 214s > 214s > ## ex3 214s > data(rpjdl, package = "ade4") 214s > fau.coa <- ade4::dudi.coa(rpjdl$fau, scan = FALSE, nf = 3) 214s > val5 <- s.value(fau.coa$li, fau.coa$li[,3], plot = FALSE) 214s > val6 <- s.value(fau.coa$li, fau.coa$li[, 3], center = 0, method = "size", symbol = "circle", col = c("yellow", "red"), plot = FALSE) 214s > g8 <- ADEgS(c(val5, val6), positions = layout2position(matrix(c(1, 2), 1, 2)), add = matrix(0, ncol = 2, nrow = 2)) 214s > 214s > ## ex3 214s > data(doubs, package = "ade4") 214s > g9 <- s.value(doubs$xy, doubs$env[, 1:2]) 214s > g10 <- s.value(doubs$xy, doubs$env) 215s > 215s 215s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 215s Copyright (C) 2025 The R Foundation for Statistical Computing 215s Platform: x86_64-pc-linux-gnu 215s 215s R is free software and comes with ABSOLUTELY NO WARRANTY. 215s You are welcome to redistribute it under certain conditions. 215s Type 'license()' or 'licence()' for distribution details. 215s 215s R is a collaborative project with many contributors. 215s Type 'contributors()' for more information and 215s 'citation()' on how to cite R or R packages in publications. 215s 215s Type 'demo()' for some demos, 'help()' for on-line help, or 215s 'help.start()' for an HTML browser interface to help. 215s Type 'q()' to quit R. 215s 215s > library(ade4) 215s > library(adegraphics) 215s Registered S3 methods overwritten by 'adegraphics': 215s method from 215s biplot.dudi ade4 215s kplot.foucart ade4 215s kplot.mcoa ade4 215s kplot.mfa ade4 215s kplot.pta ade4 215s kplot.sepan ade4 215s kplot.statis ade4 215s scatter.coa ade4 215s scatter.dudi ade4 215s scatter.nipals ade4 215s scatter.pco ade4 215s score.acm ade4 215s score.mix ade4 215s score.pca ade4 215s screeplot.dudi ade4 215s > pdf("s1d.barchart.pdf") 215s 215s Attaching package: 'adegraphics' 215s 215s The following objects are masked from 'package:ade4': 215s 215s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 215s s.label, s.logo, s.match, s.traject, s.value, table.value, 215s triangle.class 215s 215s > 215s > ## 1 : reverse and horizontal 215s > set.seed(40) 215s > x1 <- rnorm(10) 215s > g11 <- s1d.barchart(x1) 215s > g12 <- s1d.barchart(x1, ppoly.col = "blue") 215s > 215s > g21 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = TRUE) 215s > g23 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = FALSE) 215s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = TRUE) 215s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = FALSE) 215s > 215s > ## 2 : at and sort 215s > data(rpjdl, package = "ade4") 215s > rpjdl.coa <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 215s > nam <- rownames(rpjdl.coa$co) 215s > gg1 <- s1d.barchart(rpjdl.coa$co[, 1]) 215s > gg2 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, at = 51:1) 216s > gg3 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE) 216s > gg4 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE, at = 51:1) # 'at' is ignored 216s > gg5 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = TRUE) 216s > gg6 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = FALSE) 216s > stopifnot(gg6[[1]]@data$labels == gg6[[2]]@data$labels) 216s > 216s 216s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 216s Copyright (C) 2025 The R Foundation for Statistical Computing 216s Platform: x86_64-pc-linux-gnu 216s 216s R is free software and comes with ABSOLUTELY NO WARRANTY. 216s You are welcome to redistribute it under certain conditions. 216s Type 'license()' or 'licence()' for distribution details. 216s 216s R is a collaborative project with many contributors. 216s Type 'contributors()' for more information and 216s 'citation()' on how to cite R or R packages in publications. 216s 216s Type 'demo()' for some demos, 'help()' for on-line help, or 216s 'help.start()' for an HTML browser interface to help. 216s Type 'q()' to quit R. 216s 216s > library(adegraphics) 216s Registered S3 methods overwritten by 'adegraphics': 216s method from 216s biplot.dudi ade4 216s kplot.foucart ade4 216s kplot.mcoa ade4 216s kplot.mfa ade4 216s kplot.pta ade4 216s kplot.sepan ade4 216s kplot.statis ade4 216s scatter.coa ade4 216s scatter.dudi ade4 216s scatter.nipals ade4 216s scatter.pco ade4 216s score.acm ade4 216s score.mix ade4 216s score.pca ade4 216s screeplot.dudi ade4 216s > pdf("s1d.boxplot.pdf") 216s > 216s > ## ex1 216s > x <- c(rnorm(10), rnorm(10)) 216s > fact <- factor(rep(c("A", "B"), 10)) 216s > g11 <- s1d.boxplot(x, fact) 216s > g12 <- s1d.boxplot(x, fact, col = TRUE) 216s > g12 <- s1d.boxplot(x, fact, col = 2:3) 216s > g12 <- s1d.boxplot(x, fact, col = TRUE, plines.col = "black") 216s > 216s > g2 <- s1d.boxplot(x, fact, ppolygon.border = c("red", "blue"), box.rectangle = list(alpha = 1, fill = "green")) 216s > 216s > ## ex2 216s > w1 <- rnorm(100, -1) 216s > w2 <- rnorm(100) 216s > w3 <- rnorm(100, 1) 216s > f1 <- gl(3, 100) 216s > f2 <- gl(30, 10) 216s > g3 <- s1d.boxplot(c(w1, w2, w3), f1) 216s > g4 <- s1d.boxplot(c(w1, w2, w3), f2) 216s > g5 <- s1d.boxplot(c(w1, w2, w3), f2, p1d.rug.draw = FALSE) 217s > 217s > mat <- matrix(0, ncol = 1, nrow = 8) 217s > mat[c(2), ] <- 1 217s > mat[c(3:8), ] <- 2 217s > mat[1, ] <- 3 217s > g6 <- ADEgS(c(g3, g4, s1d.label(c(w1, w2, w3), p1d = list(rug = list(tck = 0.8), rev = TRUE), ppoints.cex = 0, plabels.cex = 0, plot = F, pgrid.draw = F)), 217s + layout = matrix((rev(mat)), ncol = 1)) 217s > g7 <- s1d.boxplot(c(w1, w2, w3), data.frame(f1, f2)) 217s > 217s > ## ex3 217s > data(banque, package = "ade4") 217s > banque.acm <- ade4::dudi.acm(banque, scan = FALSE, nf = 4) 217s > s1d.boxplot(banque.acm$l1[, 1], banque[, 1:7], plabels.cex = 1.8) 217s > 217s > 217s 217s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 217s Copyright (C) 2025 The R Foundation for Statistical Computing 217s Platform: x86_64-pc-linux-gnu 217s 217s R is free software and comes with ABSOLUTELY NO WARRANTY. 217s You are welcome to redistribute it under certain conditions. 217s Type 'license()' or 'licence()' for distribution details. 217s 217s R is a collaborative project with many contributors. 217s Type 'contributors()' for more information and 217s 'citation()' on how to cite R or R packages in publications. 217s 217s Type 'demo()' for some demos, 'help()' for on-line help, or 217s 'help.start()' for an HTML browser interface to help. 217s Type 'q()' to quit R. 217s 217s > library(adegraphics) 217s Registered S3 methods overwritten by 'adegraphics': 217s method from 217s biplot.dudi ade4 217s kplot.foucart ade4 217s kplot.mcoa ade4 217s kplot.mfa ade4 217s kplot.pta ade4 217s kplot.sepan ade4 217s kplot.statis ade4 217s scatter.coa ade4 217s scatter.dudi ade4 217s scatter.nipals ade4 217s scatter.pco ade4 217s score.acm ade4 217s score.mix ade4 217s score.pca ade4 217s screeplot.dudi ade4 217s > pdf("s1d.class.pdf") 217s > data(meau, package = "ade4") 217s > 217s > ## ex1 217s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 218s > g1 <- s1d.class(envpca$li[, 1], poslab = "value", meau$design$season, col = 1:6) 218s > update(g1, p1d.horizontal = FALSE) 218s > update(g1, p1d.reverse = TRUE) 218s > g2 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.reverse = TRUE) 218s > g3 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.hori = F) 218s > 218s > ## ex2 218s > set.seed(0) 218s > score1 <- c(rnorm(3, mean = 0, sd = 0.5), rnorm(3, mean = 1, sd = 0.5), rnorm(5, mean = 2, sd = 0.5)) 218s > factor1 <- factor(rep(LETTERS[1:3], times = c(3, 3, 5))) 218s > g41 <- s1d.class(score1, factor1) 218s > g42 <- s1d.class(score1, factor1, col = 1:3) 218s > g43 <- s1d.class(score1, factor1, col = TRUE) 218s > g44 <- s1d.class(score1, factor1, col = FALSE) 218s > g45 <- s1d.class(score1, factor1, plines.col = "grey") 218s > g46 <- s1d.class(score1, factor1, plines.col = "grey", col = TRUE) 218s > 218s > ## ex3 218s > score2 <- c(rnorm(10, mean = 0, sd = 0.5), rnorm(15, mean = -1, sd = 0.2), rnorm(10, mean = 2, sd = 0.5)) 218s > factor2 <- factor(rep(c(1, 3, 2), times = c(10, 15, 10))) 218s > levels(factor2) <- c("mean0", "mean2", "mean-1") 218s > g5 <- s1d.class(score2, factor2, col = 1:3) 218s > update(g5, posla = "value") 218s > 218s > indx <- rank(rnorm(35)) 218s > factor2 <- factor2[rank(indx)] 218s > s1d.class(score2[indx], factor2[indx], col = 1:3, posla = "regular") 218s > 218s > 218s 218s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 218s Copyright (C) 2025 The R Foundation for Statistical Computing 218s Platform: x86_64-pc-linux-gnu 218s 218s R is free software and comes with ABSOLUTELY NO WARRANTY. 218s You are welcome to redistribute it under certain conditions. 218s Type 'license()' or 'licence()' for distribution details. 218s 218s R is a collaborative project with many contributors. 218s Type 'contributors()' for more information and 218s 'citation()' on how to cite R or R packages in publications. 218s 218s Type 'demo()' for some demos, 'help()' for on-line help, or 218s 'help.start()' for an HTML browser interface to help. 218s Type 'q()' to quit R. 218s 218s > library(adegraphics) 218s Registered S3 methods overwritten by 'adegraphics': 218s method from 218s biplot.dudi ade4 218s kplot.foucart ade4 218s kplot.mcoa ade4 218s kplot.mfa ade4 218s kplot.pta ade4 218s kplot.sepan ade4 218s kplot.statis ade4 218s scatter.coa ade4 218s scatter.dudi ade4 218s scatter.nipals ade4 218s scatter.pco ade4 218s score.acm ade4 218s score.mix ade4 218s score.pca ade4 218s screeplot.dudi ade4 218s > pdf("s1d.density.pdf") 218s > 218s > set.seed(40) 218s > x1 <- rnorm(1000) 218s > g11 <- s1d.density(x1) 218s > g12 <- s1d.density(x1, col = FALSE, ppoly.col = "blue", p1d.rev = TRUE) 219s > g13 <- s1d.density(x1, col = TRUE, ppoly.col = "blue", p1d.hori = FALSE) 219s > g14 <- s1d.density(x1, col = TRUE, p1d.hori = FALSE, p1d.rev = TRUE) 219s > 219s > update(g11, ppolygons.border = "red") 219s > update(g11, col = FALSE, ppolygons.col = "black") 219s > update(g11, ppolygons.lwd = 3, ppolygons.lty = 3, ppolygons.alpha = 1) 219s > update(g11, ylim = c(-0.04, 0.5)) 219s > 219s > set.seed(50) 219s > x2 <- c(rnorm(1000, mean = -0.5, sd = 0.5), rnorm(1000, mean = 1)) 219s > fact <- rep(c("A", "B"), each = 1000) 219s > g21 <- s1d.density(x2, fact, col = c("red", "blue")) 219s > g22 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3) 219s > g23 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.rev = TRUE) 219s > g24 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE) 219s > g25 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE, p1d.rev = TRUE) 219s > 219s > set.seed(60) 219s > x3 <- rnorm(1000) 219s > g31 <- s1d.density(x3) 219s > g32 <- s1d.density(x3, p1d.rug.draw = FALSE) 219s > g33 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.rev = TRUE) 219s > g34 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE) 219s > g35 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE, p1d.rev = TRUE) 219s > 219s > update(g31, p1d.rev = TRUE) 219s > update(g32, p1d.rev = TRUE) 219s > update(g33, p1d.rev = FALSE) 219s > update(g34, p1d.rev = TRUE) 219s > update(g35, p1d.rev = FALSE) 219s > 219s > 219s 219s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 219s Copyright (C) 2025 The R Foundation for Statistical Computing 219s Platform: x86_64-pc-linux-gnu 219s 219s R is free software and comes with ABSOLUTELY NO WARRANTY. 219s You are welcome to redistribute it under certain conditions. 219s Type 'license()' or 'licence()' for distribution details. 219s 219s R is a collaborative project with many contributors. 219s Type 'contributors()' for more information and 219s 'citation()' on how to cite R or R packages in publications. 219s 219s Type 'demo()' for some demos, 'help()' for on-line help, or 219s 'help.start()' for an HTML browser interface to help. 219s Type 'q()' to quit R. 219s 219s > library(adegraphics) 219s Registered S3 methods overwritten by 'adegraphics': 219s method from 219s biplot.dudi ade4 219s kplot.foucart ade4 219s kplot.mcoa ade4 219s kplot.mfa ade4 219s kplot.pta ade4 219s kplot.sepan ade4 219s kplot.statis ade4 219s scatter.coa ade4 219s scatter.dudi ade4 219s scatter.nipals ade4 219s scatter.pco ade4 219s score.acm ade4 219s score.mix ade4 219s score.pca ade4 219s screeplot.dudi ade4 219s > pdf("s1d.distri.pdf") 219s > 219s > ## ex1 219s > score <- rnorm(10) 219s > df <- data.frame(matrix(rep(c(1, 2), 10), ncol = 2)) 219s > g1 <- s1d.distri(score, df) 220s > 220s > ## ex2 220s > set.seed(1) 220s > w <- seq(-1, 1, le = 200) 220s > distri <- data.frame(lapply(1:50, function(x) sample(200:1) * ((w >= (- x / 50)) & (w <= x / 50)))) 220s > names(distri) <- paste("w", 1:50, sep = "") 220s > g2 <- s1d.distri(w, distri) 220s > g3 <- s1d.distri(w, distri, yrank = TRUE, sdS = 1.5) 220s > 220s > g4 <- s1d.distri(w, distri, p1d.rug.draw = FALSE) 220s > g5 <- s1d.distri(w, distri, p1d.reverse = TRUE) 220s > g6 <- s1d.distri(w, distri, p1d.hori = FALSE) 220s > g7 <- s1d.distri(w, distri, p1d.hori = FALSE, p1d.reverse = TRUE) 220s > 220s > update(g2, p1d.rug.draw = FALSE) 220s > update(g5, p1d.rug.draw = FALSE) 220s > 220s 220s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 220s Copyright (C) 2025 The R Foundation for Statistical Computing 220s Platform: x86_64-pc-linux-gnu 220s 220s R is free software and comes with ABSOLUTELY NO WARRANTY. 220s You are welcome to redistribute it under certain conditions. 220s Type 'license()' or 'licence()' for distribution details. 220s 220s R is a collaborative project with many contributors. 220s Type 'contributors()' for more information and 220s 'citation()' on how to cite R or R packages in publications. 220s 220s Type 'demo()' for some demos, 'help()' for on-line help, or 220s 'help.start()' for an HTML browser interface to help. 220s Type 'q()' to quit R. 220s 220s > library(adegraphics) 220s Registered S3 methods overwritten by 'adegraphics': 220s method from 220s biplot.dudi ade4 220s kplot.foucart ade4 220s kplot.mcoa ade4 220s kplot.mfa ade4 220s kplot.pta ade4 220s kplot.sepan ade4 220s kplot.statis ade4 220s scatter.coa ade4 220s scatter.dudi ade4 220s scatter.nipals ade4 220s scatter.pco ade4 220s score.acm ade4 220s score.mix ade4 220s score.pca ade4 220s screeplot.dudi ade4 220s > pdf("s1d.gauss.pdf") 220s > 220s > data(meau, package= "ade4") 220s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 220s > dffac <- cbind.data.frame(meau$design$season, meau$design$site) 220s > g11 <- s1d.gauss(envpca$li[, 1], dffac[, 1]) 221s > g12 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.rev = TRUE) 221s > g13 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE) 221s > g14 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE, p1d.rev = TRUE) 221s > 221s > g2 <- s1d.gauss(envpca$li[, 1], dffac[, 1], ppoly.col = 1:4, fill = TRUE, plines.col = 1:4, col = FALSE) 221s > 221s > g31 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, ylim = c(0, 2), fill = TRUE, p1d.hori = FALSE) 221s > g32 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, fill = TRUE, p1d.hori = FALSE) 221s > 221s > g4 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:5) 221s > g5 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = FALSE, ppoly.col = 1:6) 221s > g6 <- s1d.gauss(envpca$li[, 1], fac = dffac[, 1], fill = TRUE, col = 1:6, ppoly.col = 1:6) 221s > 221s > g7 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:6, ppoly.col = 1:6, steps = 10) 221s > g8 <- s1d.gauss(envpca$li[, 1], dffac[, 2]) 221s > 221s > update(g11, p1d.reverse = TRUE) 221s > update(g12, p1d.reverse = FALSE) 221s > update(g13, p1d.reverse = TRUE) 221s > update(g14, p1d.reverse = FALSE) 221s > 221s 221s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 221s Copyright (C) 2025 The R Foundation for Statistical Computing 221s Platform: x86_64-pc-linux-gnu 221s 221s R is free software and comes with ABSOLUTELY NO WARRANTY. 221s You are welcome to redistribute it under certain conditions. 221s Type 'license()' or 'licence()' for distribution details. 221s 221s R is a collaborative project with many contributors. 221s Type 'contributors()' for more information and 221s 'citation()' on how to cite R or R packages in publications. 221s 221s Type 'demo()' for some demos, 'help()' for on-line help, or 221s 'help.start()' for an HTML browser interface to help. 221s Type 'q()' to quit R. 221s 221s > library(ade4) 221s > library(adegraphics) 221s Registered S3 methods overwritten by 'adegraphics': 221s method from 221s biplot.dudi ade4 221s kplot.foucart ade4 221s kplot.mcoa ade4 221s kplot.mfa ade4 221s kplot.pta ade4 221s kplot.sepan ade4 221s kplot.statis ade4 221s scatter.coa ade4 221s scatter.dudi ade4 221s scatter.nipals ade4 221s scatter.pco ade4 221s score.acm ade4 221s score.mix ade4 221s score.pca ade4 221s screeplot.dudi ade4 222s 222s Attaching package: 'adegraphics' 222s 222s The following objects are masked from 'package:ade4': 222s 222s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 222s s.label, s.logo, s.match, s.traject, s.value, table.value, 222s triangle.class 222s 222s > pdf("s1d.hist.pdf") 222s > 222s > set.seed(40) 222s > x1 <- rnorm(1000) 222s > g11 <- s1d.hist(x1) 222s > g12 <- s1d.hist(x1, col = 1:10) 222s > g13 <- s1d.hist(x1, col = FALSE, ppoly.col = 1:10) 222s > g14 <- s1d.hist(x1, col = TRUE, ppoly.col = "blue") 222s > 222s > set.seed(50) 222s > x1 <- rnorm(1000) 222s > g21 <- s1d.hist(x1) # p1d.hori = TRUE and p1d.reverse = FALSE by default 222s > # g22 <- s1d.hist(x1, p1d.hori = TRUE, p1d.rev = TRUE) 222s > g23 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = FALSE) 222s > # g24 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = TRUE) 222s > 222s > 222s > # randtest.pcaiv 222s > data(rpjdl, package = "ade4") 222s > millog <- log(rpjdl$mil + 1) 222s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 222s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 222s > set.seed(50) 222s > rd11 <- randtest(caiv1) 222s > plot(rd11) 222s > set.seed(50) 222s > rd12 <- randtest(caiv1, output = "full") 222s > plot(rd12, nclass = 15) # must be the same output as rd11 222s > set.seed(50) 222s > rd13 <- randtest(caiv1, output = "full") 222s > plot(rd13, nclass = 8) 222s > plot(rd13, nclass = 8, plines.col = "red") 222s > plot(rd13, nclass = 8, obs.plines.col = "red") 222s > plot(rd13, nclass = 8, sim.plines.col = "red") 222s > 222s > # randtest.dpcoa 222s > data(humDNAm, package = "ade4") 222s > dpcoahum <- dpcoa(data.frame(t(humDNAm$samples)), sqrt(humDNAm$distances), scan = FALSE, nf = 2) 222s > set.seed(50) 222s > rd21 <- randtest(dpcoahum) 222s > plot(rd21) 222s > rd22 <- randtest(dpcoahum, output = "full") 223s > plot(rd22) 223s > 223s > # randtest.amova (plot.krandtest) 223s > amovahum <- amova(humDNAm$samples, sqrt(humDNAm$distances), humDNAm$structures) 223s > set.seed(50) 223s > rd31 <- randtest(amovahum, 49) 223s > plot(rd31) 223s > plot(rd31, plines.col = "red") 223s > plot(rd31, g1.plines.col = "red") 223s > set.seed(50) 223s > rd32 <- randtest(amovahum, 49, output = "full") 223s > plot(rd32) 223s > plot(rd32, plines.col = "red") 223s > plot(rd32, g1.plines.col = "red") 224s > plot(rd32, nclass = 30, g2.pback.col = "lightblue") 224s > 224s > # randtest.coinertia 224s > data(doubs, package = "ade4") 224s > dudi1 <- dudi.pca(doubs$env, scale = TRUE, scan = FALSE, nf = 3) 224s > dudi2 <- dudi.pca(doubs$fish, scale = FALSE, scan = FALSE, nf = 2) 224s > coin1 <- coinertia(dudi1,dudi2, scan = FALSE, nf = 2) 224s > set.seed(50) 224s > rd4 <- randtest(coin1) 224s > plot(rd4) 224s > 224s > # randtest.pcaivortho 224s > data(rpjdl, package = "ade4") 224s > millog <- log(rpjdl$mil + 1) 224s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 224s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 224s > set.seed(50) 224s > rd5 <- randtest(caiv1) 224s > plot(rd5) 224s > 224s > # randtest.rlq (plot.krandtest) 224s > data(aviurba, package = "ade4") 224s > coa1 <- dudi.coa(aviurba$fau, scannf = FALSE, nf = 2) 224s > dudimil <- dudi.hillsmith(aviurba$mil, scannf = FALSE, nf = 2, row.w = coa1$lw) 224s > duditrait <- dudi.hillsmith(aviurba$traits, scannf = FALSE, nf = 2, row.w = coa1$cw) 224s > rlq1 <- rlq(dudimil, coa1, duditrait, scannf = FALSE, nf = 2) 224s > set.seed(50) 224s > rd6 <- randtest(rlq1) 224s > plot(rd6) 224s > 224s > # randtest.between 224s > data(meaudret, package = "ade4") 224s > pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 3) 224s > set.seed(50) 224s > rd7 <- randtest(bca(pca1, meaudret$design$season, scan = FALSE), 99) 224s > plot(rd7, main = "Monte-Carlo test") 224s > 224s > # randtest.discrimin 224s > set.seed(50) 224s > rd8 <- randtest(discrimin(pca1, meaudret$design$season, scan = FALSE), 99) 224s > plot(rd8, main = "Monte-Carlo test") 224s > 224s 224s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 224s Copyright (C) 2025 The R Foundation for Statistical Computing 224s Platform: x86_64-pc-linux-gnu 224s 224s R is free software and comes with ABSOLUTELY NO WARRANTY. 224s You are welcome to redistribute it under certain conditions. 224s Type 'license()' or 'licence()' for distribution details. 224s 224s R is a collaborative project with many contributors. 224s Type 'contributors()' for more information and 224s 'citation()' on how to cite R or R packages in publications. 224s 224s Type 'demo()' for some demos, 'help()' for on-line help, or 224s 'help.start()' for an HTML browser interface to help. 224s Type 'q()' to quit R. 224s 225s > library(adegraphics) 225s Registered S3 methods overwritten by 'adegraphics': 225s method from 225s biplot.dudi ade4 225s kplot.foucart ade4 225s kplot.mcoa ade4 225s kplot.mfa ade4 225s kplot.pta ade4 225s kplot.sepan ade4 225s kplot.statis ade4 225s scatter.coa ade4 225s scatter.dudi ade4 225s scatter.nipals ade4 225s scatter.pco ade4 225s score.acm ade4 225s score.mix ade4 225s score.pca ade4 225s screeplot.dudi ade4 225s > pdf("s1d.label.pdf") 225s > data(meau, package= "ade4") 225s > 225s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 225s > 225s > g1 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1)) 225s > g2 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), p1d.hori = F) 226s > g3 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), plabels.boxes.draw = FALSE, plab.srt = 45, plabel.boxes = list(draw = FALSE)) 226s Registered S3 methods overwritten by 'adegraphics': 226s method from 226s biplot.dudi ade4 226s kplot.foucart ade4 226s kplot.mcoa ade4 226s kplot.mfa ade4 226s kplot.pta ade4 226s kplot.sepan ade4 226s kplot.statis ade4 226s scatter.coa ade4 226s scatter.dudi ade4 226s scatter.nipals ade4 226s scatter.pco ade4 226s score.acm ade4 226s score.mix ade4 226s score.pca ade4 226s screeplot.dudi ade4 226s > g4 <- s1d.label(envpca$co[, 1], row.names(envpca$co), p1d.reverse = TRUE, poslabel = "value") 226s > g5 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), at = 0, plabel.cex = 0) 226s > 226s 226s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 226s Copyright (C) 2025 The R Foundation for Statistical Computing 226s Platform: x86_64-pc-linux-gnu 226s 226s R is free software and comes with ABSOLUTELY NO WARRANTY. 226s You are welcome to redistribute it under certain conditions. 226s Type 'license()' or 'licence()' for distribution details. 226s 226s R is a collaborative project with many contributors. 226s Type 'contributors()' for more information and 226s 'citation()' on how to cite R or R packages in publications. 226s 226s Type 'demo()' for some demos, 'help()' for on-line help, or 226s 'help.start()' for an HTML browser interface to help. 226s Type 'q()' to quit R. 226s 226s > library(adegraphics) 226s > pdf("s1d.match.pdf") 226s > 226s > g1 <- s1d.match(-5:5, 2 * (-5:5)) 226s > g2 <- s1d.match(rnorm(10), runif(10), p1d.hor = FALSE) 226s > g3 <- s1d.match(1:5, 7:11, p1d.hor = F, p1d.rev = T) 226s > 226s 226s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 226s Copyright (C) 2025 The R Foundation for Statistical Computing 226s Platform: x86_64-pc-linux-gnu 226s 226s R is free software and comes with ABSOLUTELY NO WARRANTY. 226s You are welcome to redistribute it under certain conditions. 226s Type 'license()' or 'licence()' for distribution details. 226s 226s R is a collaborative project with many contributors. 226s Type 'contributors()' for more information and 226s 'citation()' on how to cite R or R packages in publications. 226s 226s Type 'demo()' for some demos, 'help()' for on-line help, or 226s 'help.start()' for an HTML browser interface to help. 226s Type 'q()' to quit R. 226s 226s > library(adegraphics) 226s Registered S3 methods overwritten by 'adegraphics': 226s method from 226s biplot.dudi ade4 226s kplot.foucart ade4 226s kplot.mcoa ade4 226s kplot.mfa ade4 226s kplot.pta ade4 226s kplot.sepan ade4 226s kplot.statis ade4 226s scatter.coa ade4 226s scatter.dudi ade4 226s scatter.nipals ade4 226s scatter.pco ade4 226s score.acm ade4 226s score.mix ade4 226s score.pca ade4 226s screeplot.dudi ade4 226s > pdf("table.image.pdf") 226s > 226s > ## ex1 226s > x <- 1:4 226s > y <- 1:4 226s > df <- data.frame(as.matrix(cbind(x, y))) 226s > g1 <- table.image(df, col = 2:4) 226s > update(g1, plegend.drawColorKey = TRUE) 226s > 226s > ## ex2 226s > df <- matrix(0, 10, 10) 226s > df[1:3, 1:3] <- 5 226s > g2 <- table.image(df) 226s > g3 <- table.image(df, breaks = c(5, 2, 0)) 226s > 226s > ## ex3 226s > data(rpjdl, package = "ade4") 226s > X <- data.frame(t(rpjdl$fau)) 226s > Y <- data.frame(t(rpjdl$mil)) 226s > coa1 <- ade4::dudi.coa(X, scan = FALSE) 226s > x <- rank(coa1$co[, 1]) 226s > y <- rank(coa1$li[, 1]) 226s > g4 <- table.image(Y, coordsx = x, coordsy = 1:8, axis.text = list(alpha = 0), pgrid.col = "black", pgrid.lwd = 0.8, col = c("white", "black"), plegend.drawKey = FALSE) 226s > g5 <- table.image(X, coordsx = x, coordsy = y, ptable = list(x = list(tck = 0), y = list(tck = 4)), pleg.drawKey = FALSE, labelsy = paste(" ", row.names(X), sep = "")) 226s > g6 <- ADEgS(list(g4, g5), positions = rbind(c(0, 0, 1, 0.3), c(0, 0.4, 1, 1))) 226s > 226s 226s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 226s Copyright (C) 2025 The R Foundation for Statistical Computing 226s Platform: x86_64-pc-linux-gnu 226s 226s R is free software and comes with ABSOLUTELY NO WARRANTY. 226s You are welcome to redistribute it under certain conditions. 226s Type 'license()' or 'licence()' for distribution details. 226s 226s R is a collaborative project with many contributors. 226s Type 'contributors()' for more information and 226s 'citation()' on how to cite R or R packages in publications. 226s 226s Type 'demo()' for some demos, 'help()' for on-line help, or 226s 'help.start()' for an HTML browser interface to help. 226s Type 'q()' to quit R. 226s 227s > library(adegraphics) 227s Registered S3 methods overwritten by 'adegraphics': 227s method from 227s biplot.dudi ade4 227s kplot.foucart ade4 227s kplot.mcoa ade4 227s kplot.mfa ade4 227s kplot.pta ade4 227s kplot.sepan ade4 227s kplot.statis ade4 227s scatter.coa ade4 227s scatter.dudi ade4 227s scatter.nipals ade4 227s scatter.pco ade4 227s score.acm ade4 227s score.mix ade4 227s score.pca ade4 227s screeplot.dudi ade4 227s > pdf("table.value.pdf") 227s > 227s > 227s > ## ex1 227s > data(olympic, package = "ade4") 227s > tab1 <- data.frame(scale(olympic$tab)) 227s > pca <- ade4::dudi.pca(tab1, scann = FALSE) 227s > g1 <- table.value(tab1, axis.line = list(col = "blue"), axis.text = list(col = "grey")) 227s > g2 <- table.value(tab1, coordsx = c(1:5, 10:6)) 227s > g3 <- table.value(tab1, coordsx = c(1:5, 10:8)) 227s > g4 <- table.value(tab1, coordsy = rank(pca$li[, 1]), coordsx = rank(pca$co[, 1]), method = "color") 227s > g5 <- table.value(tab1, coordsy = pca$li[, 1], coordsx = pca$co[, 1], ptable = list(x = list(srt = 90))) 227s > 227s > ## ex2 227s > data(eurodist) 227s > g61 <- table.value(eurodist) 227s > g62 <- table.value(eurodist, store = TRUE, symbol = "circle") 227s > g63 <- table.value(eurodist, store = FALSE, psub.text = "eurodist", psub.position = c(0, -0.04)) 227s > g64 <- table.value(eurodist, ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 227s > g65 <- table.value(eurodist, ptable.x = list(pos = "bottom"), 227s + ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 227s > 227s > ## ex3 227s > data("doubs", package = "ade4") 227s > tab2 <- as.table(as.matrix(doubs$fish)) 227s > g8 <- table.value(tab2) 227s > 227s > ## ex4 227s > data(chats, package = "ade4") 227s > tab3 <- as.table(as.matrix(data.frame(t(chats)))) 227s > coa1 <- ade4::dudi.coa(data.frame(t(chats)), scann = FALSE) 227s > adegparold <- adegpar() 227s > adegpar(ptable = list(x = list(pos = "bottom", srt = 0), y = list(pos = "left")), plegend.drawKey = FALSE) 227s > g9 <- table.value(tab3, meanX = TRUE, ablineX = TRUE) 227s > g10 <- table.value(tab3, meanY = TRUE, ablineY = TRUE) 227s > g11 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanX = TRUE, ablineX = TRUE) 227s > g12 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanY = TRUE, ablineY = TRUE) 227s > g13 <- ADEgS(list(g9, g10, g11, g12), pos = rbind(c(0, 0.5, 0.5, 1), c(0.5, 0.5, 1, 1), c(0, 0, 0.5, 0.5), c(0.5, 0, 1, 0.5))) 227s > adegpar(adegparold) 227s > 227s > ## ex5 227s > data(rpjdl, package = "ade4") 227s > tab4 <- data.frame(t(rpjdl$fau)) 227s > coa2 <- ade4::dudi.coa(tab4, scann = FALSE) 228s > g14 <- table.value(tab4, coordsx = coa2$c1[, 1], coordsy = rank(coa2$l1[, 1]), axis.text = list(cex = 0), labelsy = rpjdl$lalab, plot = F) 228s > 228s > ## ex6 228s > tab5 <- as.table(matrix(rep(0, 100), 10)) 228s > tab5[1:5, 1:5] <- 10 228s > ade4::table.cont(tab5, abmean.x = T, y = 10:1) 228s > g15 <- table.value(tab5, coordsy = 10:1, meanX = T) 228s > g16 <- table.value(tab5, coordsy = 10:1, meanX = T, meanY = TRUE, ablineX = TRUE, ablineY = TRUE) 228s > 228s > ## ex7 228s > tab6 <- matrix(rep(0, 100), 10) 228s > tab6[1:5, 1:5] <- 20 228s > colnames(tab6) <- LETTERS[1:10] 228s > rownames(tab6) <- LETTERS[1:10] 228s > ade4::table.value(tab6, x = 1:10, y = 10:1) 228s > g17 <- table.value(tab6, coordsx = 1:10, coordsy = 10:1) 228s > g18 <- table.value(tab6, coordsx = 1:10, coordsy = c(1, 2, 5, 6, 8, 9, 10, 3, 4, 7)) 228s > 228s > 228s > ## ex8 228s > d <- as.dist(matrix(rep(1:5, 5), 5), upper = TRUE) 228s > attr(d, "Labels") <- c ("A", "B", "C", "D", "E") 228s > g4 <- table.value(d) 228s > 228s > ## ex9 228s > data(irishdata, package = "ade4") 228s > d.geo <- dist(irishdata$xy.utm) 228s > g5 <- table.value(d.geo) 228s > 228s 228s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 228s Copyright (C) 2025 The R Foundation for Statistical Computing 228s Platform: x86_64-pc-linux-gnu 228s 228s R is free software and comes with ABSOLUTELY NO WARRANTY. 228s You are welcome to redistribute it under certain conditions. 228s Type 'license()' or 'licence()' for distribution details. 228s 228s R is a collaborative project with many contributors. 228s Type 'contributors()' for more information and 228s 'citation()' on how to cite R or R packages in publications. 228s 228s Type 'demo()' for some demos, 'help()' for on-line help, or 228s 'help.start()' for an HTML browser interface to help. 228s Type 'q()' to quit R. 228s 228s > library(adegraphics) 228s Registered S3 methods overwritten by 'adegraphics': 228s method from 228s biplot.dudi ade4 228s kplot.foucart ade4 228s kplot.mcoa ade4 228s kplot.mfa ade4 228s kplot.pta ade4 228s kplot.sepan ade4 228s kplot.statis ade4 228s scatter.coa ade4 228s scatter.dudi ade4 228s scatter.nipals ade4 228s scatter.pco ade4 228s score.acm ade4 228s score.mix ade4 228s score.pca ade4 228s screeplot.dudi ade4 228s > pdf("triangle.pdf") 228s > 228s > ## ex1 228s > data(euro123, package = "ade4") 228s > 228s > dfxyz1 <- rbind.data.frame(euro123$in78, euro123$in86, euro123$in97) 228s > row.names(dfxyz1) <- paste(row.names(euro123$in78), rep(c(1, 2, 3), rep(12, 3)), sep = "") 228s > g1 <- triangle.label(dfxyz1, label = row.names(dfxyz1)) 228s > g2 <- triangle.label(euro123$in86, label = row.names(euro123$in78), plab.cex = 0.8) 228s > g3 <- triangle.match(euro123$in78, euro123$in86) 228s > g4 <- triangle.label(rbind.data.frame(euro123$in78, euro123$in86), plab.cex = 1, addaxes = TRUE, psub = list(text = "Principal axis", cex = 2, pos = "topright")) 229s > g5 <- triangle.label(euro123[[1]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), plabels.cex = 1, label = row.names(euro123[[1]]), addax = TRUE) 229s > g6 <- triangle.label(euro123[[2]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 229s > g7 <- triangle.label(euro123[[3]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 229s > g8 <- triangle.label(rbind.data.frame(euro123[[1]], euro123[[2]], euro123[[3]])) 229s > 229s > ## ex2 229s > dfxyz2 <- cbind.data.frame(a = runif(100), b = runif(100), c = runif(100, 4, 5)) 229s > g9 <- triangle.label(dfxyz2) 229s > 229s > ## ex3 229s > g10 <- triangle.label(dfxyz1) 229s > g11 <- triangle.class(dfxyz1, as.factor(rep("G", 36)), star = 0.5, ellips = 1) 229s > g12 <- triangle.class(dfxyz1, euro123$plan$an) 229s > g13 <- triangle.class(dfxyz1, euro123$plan$pays) 229s > g14 <- triangle.class(dfxyz1, euro123$plan$an, elli = 1, pell.axe.draw = TRUE) 229s > g15 <- triangle.class(dfxyz1, euro123$plan$an, elli = 0, sta = 0, col = c("red", "green", "blue"), pell.axe.draw = TRUE, plab.cex = 2, ppoi.cex = 2, pell.axe.draw = TRUE) 229s > g16 <- triangle.class(dfxyz1, euro123$plan$an, ell = 2, sta = 0.5, pell.axe.draw = TRUE, plab.cex = 1.5) 229s > g17 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, adjust = FALSE) 229s > g18 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, chull =c(0.2, 0.25, 0.5, 0.75, 1), adjust = TRUE, showposi = TRUE, col = 10:13, pgrid.draw = FALSE) 229s > 230s autopkgtest [01:48:57]: test run-unit-test: -----------------------] 230s run-unit-test PASS 230s autopkgtest [01:48:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 230s autopkgtest [01:48:57]: test pkg-r-autopkgtest: preparing testbed 230s Reading package lists... 231s Building dependency tree... 231s Reading state information... 231s Solving dependencies... 231s The following NEW packages will be installed: 231s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 231s dctrl-tools g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 231s gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 231s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 231s libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 231s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 231s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 231s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 231s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0 231s libreadline-dev libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev 231s linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto 231s zlib1g-dev 231s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. 231s Need to get 112 MB of archives. 231s After this operation, 402 MB of additional disk space will be used. 231s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 231s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 231s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 231s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 231s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 232s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 232s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 232s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 233s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 233s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 233s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 233s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 233s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 233s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 233s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 233s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 233s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 233s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 233s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 233s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 233s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 234s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 234s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 234s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 234s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 234s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 234s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 234s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 234s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 234s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 234s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 234s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 234s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 235s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 235s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 235s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 235s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 235s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 235s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 235s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 235s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 235s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 235s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 235s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 235s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 235s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 235s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 235s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 235s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 235s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 235s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 235s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 235s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 235s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 235s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 235s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 235s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 235s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 235s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 235s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 235s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 236s Fetched 112 MB in 4s (25.1 MB/s) 236s Selecting previously unselected package libc-dev-bin. 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 151070 files and directories currently installed.) 236s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 236s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 236s Selecting previously unselected package linux-libc-dev:amd64. 236s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_amd64.deb ... 236s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 236s Selecting previously unselected package libcrypt-dev:amd64. 236s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 236s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 236s Selecting previously unselected package rpcsvc-proto. 236s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 236s Unpacking rpcsvc-proto (1.4.3-1build1) ... 236s Selecting previously unselected package libc6-dev:amd64. 236s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_amd64.deb ... 236s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 236s Selecting previously unselected package libisl23:amd64. 236s Preparing to unpack .../05-libisl23_0.27-1build1_amd64.deb ... 236s Unpacking libisl23:amd64 (0.27-1build1) ... 236s Selecting previously unselected package libmpc3:amd64. 236s Preparing to unpack .../06-libmpc3_1.3.1-2_amd64.deb ... 236s Unpacking libmpc3:amd64 (1.3.1-2) ... 236s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 236s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 236s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 236s Selecting previously unselected package cpp-15. 236s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 236s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 236s Selecting previously unselected package cpp-x86-64-linux-gnu. 236s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 236s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 236s Selecting previously unselected package cpp. 236s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 236s Unpacking cpp (4:15.2.0-4ubuntu1) ... 236s Selecting previously unselected package libcc1-0:amd64. 236s Preparing to unpack .../11-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libitm1:amd64. 236s Preparing to unpack .../12-libitm1_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libasan8:amd64. 236s Preparing to unpack .../13-libasan8_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package liblsan0:amd64. 236s Preparing to unpack .../14-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libtsan2:amd64. 236s Preparing to unpack .../15-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libubsan1:amd64. 236s Preparing to unpack .../16-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libhwasan0:amd64. 236s Preparing to unpack .../17-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libquadmath0:amd64. 236s Preparing to unpack .../18-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 236s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 236s Selecting previously unselected package libgcc-15-dev:amd64. 236s Preparing to unpack .../19-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 236s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 236s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 236s Preparing to unpack .../20-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 236s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package gcc-15. 237s Preparing to unpack .../21-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package gcc-x86-64-linux-gnu. 237s Preparing to unpack .../22-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 237s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 237s Selecting previously unselected package gcc. 237s Preparing to unpack .../23-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 237s Unpacking gcc (4:15.2.0-4ubuntu1) ... 237s Selecting previously unselected package libstdc++-15-dev:amd64. 237s Preparing to unpack .../24-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package g++-15-x86-64-linux-gnu. 237s Preparing to unpack .../25-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package g++-15. 237s Preparing to unpack .../26-g++-15_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking g++-15 (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package g++-x86-64-linux-gnu. 237s Preparing to unpack .../27-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 237s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 237s Selecting previously unselected package g++. 237s Preparing to unpack .../28-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 237s Unpacking g++ (4:15.2.0-4ubuntu1) ... 237s Selecting previously unselected package build-essential. 237s Preparing to unpack .../29-build-essential_12.12ubuntu2_amd64.deb ... 237s Unpacking build-essential (12.12ubuntu2) ... 237s Selecting previously unselected package dctrl-tools. 237s Preparing to unpack .../30-dctrl-tools_2.24-3build4_amd64.deb ... 237s Unpacking dctrl-tools (2.24-3build4) ... 237s Selecting previously unselected package libgfortran-15-dev:amd64. 237s Preparing to unpack .../31-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 237s Preparing to unpack .../32-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package gfortran-15. 237s Preparing to unpack .../33-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 237s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 237s Selecting previously unselected package gfortran-x86-64-linux-gnu. 237s Preparing to unpack .../34-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 237s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 237s Selecting previously unselected package gfortran. 237s Preparing to unpack .../35-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 237s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 237s Selecting previously unselected package icu-devtools. 237s Preparing to unpack .../36-icu-devtools_78.2-1ubuntu1_amd64.deb ... 237s Unpacking icu-devtools (78.2-1ubuntu1) ... 237s Selecting previously unselected package libblas-dev:amd64. 237s Preparing to unpack .../37-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 237s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 237s Selecting previously unselected package libbz2-dev:amd64. 237s Preparing to unpack .../38-libbz2-dev_1.0.8-6build2_amd64.deb ... 237s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 237s Selecting previously unselected package libdeflate-dev:amd64. 237s Preparing to unpack .../39-libdeflate-dev_1.23-2build1_amd64.deb ... 237s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 237s Selecting previously unselected package libicu-dev:amd64. 237s Preparing to unpack .../40-libicu-dev_78.2-1ubuntu1_amd64.deb ... 237s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 237s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 237s Preparing to unpack .../41-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ... 237s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 237s Selecting previously unselected package libjpeg8-dev:amd64. 237s Preparing to unpack .../42-libjpeg8-dev_8c-2ubuntu12_amd64.deb ... 237s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ... 237s Selecting previously unselected package libjpeg-dev:amd64. 237s Preparing to unpack .../43-libjpeg-dev_8c-2ubuntu12_amd64.deb ... 237s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ... 237s Selecting previously unselected package liblapack-dev:amd64. 237s Preparing to unpack .../44-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 237s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 237s Selecting previously unselected package libncurses-dev:amd64. 238s Preparing to unpack .../45-libncurses-dev_6.6+20251231-1_amd64.deb ... 238s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 238s Selecting previously unselected package libpcre2-16-0:amd64. 238s Preparing to unpack .../46-libpcre2-16-0_10.46-1_amd64.deb ... 238s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 238s Selecting previously unselected package libpcre2-32-0:amd64. 238s Preparing to unpack .../47-libpcre2-32-0_10.46-1_amd64.deb ... 238s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 238s Selecting previously unselected package libpcre2-posix3:amd64. 238s Preparing to unpack .../48-libpcre2-posix3_10.46-1_amd64.deb ... 238s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 238s Selecting previously unselected package libpcre2-dev:amd64. 238s Preparing to unpack .../49-libpcre2-dev_10.46-1_amd64.deb ... 238s Unpacking libpcre2-dev:amd64 (10.46-1) ... 238s Selecting previously unselected package libpkgconf3:amd64. 238s Preparing to unpack .../50-libpkgconf3_1.8.1-4build1_amd64.deb ... 238s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 238s Selecting previously unselected package zlib1g-dev:amd64. 238s Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 238s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 238s Selecting previously unselected package libpng-dev:amd64. 238s Preparing to unpack .../52-libpng-dev_1.6.54-1_amd64.deb ... 238s Unpacking libpng-dev:amd64 (1.6.54-1) ... 238s Selecting previously unselected package libreadline-dev:amd64. 238s Preparing to unpack .../53-libreadline-dev_8.3-3_amd64.deb ... 238s Unpacking libreadline-dev:amd64 (8.3-3) ... 238s Selecting previously unselected package libzstd-dev:amd64. 238s Preparing to unpack .../54-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 238s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 238s Selecting previously unselected package liblzma-dev:amd64. 238s Preparing to unpack .../55-liblzma-dev_5.8.2-2_amd64.deb ... 238s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 238s Selecting previously unselected package pkgconf-bin. 238s Preparing to unpack .../56-pkgconf-bin_1.8.1-4build1_amd64.deb ... 238s Unpacking pkgconf-bin (1.8.1-4build1) ... 238s Selecting previously unselected package pkgconf:amd64. 238s Preparing to unpack .../57-pkgconf_1.8.1-4build1_amd64.deb ... 238s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 238s Selecting previously unselected package libtirpc-dev:amd64. 238s Preparing to unpack .../58-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 238s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 238s Selecting previously unselected package r-base-dev. 238s Preparing to unpack .../59-r-base-dev_4.5.2-1ubuntu2_all.deb ... 238s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 238s Selecting previously unselected package pkg-r-autopkgtest. 238s Preparing to unpack .../60-pkg-r-autopkgtest_20250812_all.deb ... 238s Unpacking pkg-r-autopkgtest (20250812) ... 238s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ... 238s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ... 238s Setting up libpcre2-16-0:amd64 (10.46-1) ... 238s Setting up libpcre2-32-0:amd64 (10.46-1) ... 238s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... 238s Setting up libpkgconf3:amd64 (1.8.1-4build1) ... 238s Setting up rpcsvc-proto (1.4.3-1build1) ... 238s Setting up libquadmath0:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libmpc3:amd64 (1.3.1-2) ... 238s Setting up icu-devtools (78.2-1ubuntu1) ... 238s Setting up pkgconf-bin (1.8.1-4build1) ... 238s Setting up liblzma-dev:amd64 (5.8.2-2) ... 238s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libpcre2-posix3:amd64 (10.46-1) ... 238s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ... 238s Setting up libasan8:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libisl23:amd64 (0.27-1build1) ... 238s Setting up libc-dev-bin (2.42-2ubuntu4) ... 238s Setting up libdeflate-dev:amd64 (1.23-2build1) ... 238s Setting up libcc1-0:amd64 (16-20260208-1ubuntu1) ... 238s Setting up liblsan0:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ... 238s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 238s Setting up dctrl-tools (2.24-3build4) ... 238s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ... 238s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 238s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 238s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 238s Setting up pkgconf:amd64 (1.8.1-4build1) ... 238s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 238s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 238s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 238s Setting up cpp-15 (15.2.0-12ubuntu1) ... 238s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ... 238s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ... 238s Setting up libbz2-dev:amd64 (1.0.8-6build2) ... 238s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 238s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 238s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 238s Setting up libncurses-dev:amd64 (6.6+20251231-1) ... 238s Setting up libpcre2-dev:amd64 (10.46-1) ... 238s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 238s Setting up libreadline-dev:amd64 (8.3-3) ... 238s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 238s Setting up gcc-15 (15.2.0-12ubuntu1) ... 238s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 238s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 238s Setting up cpp (4:15.2.0-4ubuntu1) ... 238s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ... 238s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 238s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 238s Setting up libpng-dev:amd64 (1.6.54-1) ... 238s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ... 238s Setting up gcc (4:15.2.0-4ubuntu1) ... 238s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 238s Setting up g++-15 (15.2.0-12ubuntu1) ... 238s Setting up gfortran (4:15.2.0-4ubuntu1) ... 238s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 238s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 238s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 238s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 238s Setting up g++ (4:15.2.0-4ubuntu1) ... 238s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 238s Setting up build-essential (12.12ubuntu2) ... 238s Setting up r-base-dev (4.5.2-1ubuntu2) ... 238s Setting up pkg-r-autopkgtest (20250812) ... 238s Processing triggers for libc-bin (2.42-2ubuntu4) ... 238s Processing triggers for man-db (2.13.1-1build1) ... 239s Processing triggers for install-info (7.2-5) ... 239s autopkgtest [01:49:06]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 239s autopkgtest [01:49:06]: test pkg-r-autopkgtest: [----------------------- 240s Test: Try to load the R library adegraphics 240s 240s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 240s Copyright (C) 2025 The R Foundation for Statistical Computing 240s Platform: x86_64-pc-linux-gnu 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > library('adegraphics') 240s Registered S3 methods overwritten by 'adegraphics': 240s method from 240s biplot.dudi ade4 240s kplot.foucart ade4 240s kplot.mcoa ade4 240s kplot.mfa ade4 240s kplot.pta ade4 240s kplot.sepan ade4 240s kplot.statis ade4 240s scatter.coa ade4 240s scatter.dudi ade4 240s scatter.nipals ade4 240s scatter.pco ade4 240s score.acm ade4 240s score.mix ade4 240s score.pca ade4 240s screeplot.dudi ade4 240s > 240s autopkgtest [01:49:07]: test pkg-r-autopkgtest: -----------------------] 241s pkg-r-autopkgtest PASS 241s autopkgtest [01:49:08]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 241s autopkgtest [01:49:08]: @@@@@@@@@@@@@@@@@@@@ summary 241s run-unit-test PASS 241s pkg-r-autopkgtest PASS