0s autopkgtest [04:20:18]: starting date and time: 2026-02-10 04:20:18+0000
  0s autopkgtest [04:20:18]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:20:18]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kv50c347/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-adegenet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-11.secgroup --name adt-resolute-amd64-r-cran-adegenet-20260210-042018-juju-7f2275-prod-proposed-migration-environment-15-3a8f96c5-3af9-4b25-b5e6-a68fe4844660 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-cran-adegenet-20260210-042018-juju-7f2275-prod-proposed-migration-environment-15-3a8f96c5-3af9-4b25-b5e6-a68fe4844660 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 73s autopkgtest [04:21:31]: testbed dpkg architecture: amd64
 74s autopkgtest [04:21:32]: testbed apt version: 3.1.14
 74s autopkgtest [04:21:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 74s autopkgtest [04:21:32]: testbed release detected to be: None
 75s autopkgtest [04:21:33]: updating testbed package index (apt update)
 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 76s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 76s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 76s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 77s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 77s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 77s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 77s Fetched 5189 kB in 2s (2881 kB/s)
 78s Reading package lists...
 79s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 79s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 79s Reading package lists...
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 80s Calculating upgrade...
 80s The following package was automatically installed and is no longer required:
 80s   libpython3.13
 80s Use 'sudo apt autoremove' to remove it.
 80s The following NEW packages will be installed:
 80s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 80s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 80s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 80s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 80s The following packages will be upgraded:
 80s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 80s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 80s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 80s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 80s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 80s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 80s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 80s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 80s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 80s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 80s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 80s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 80s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 80s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 80s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 80s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 80s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 80s Need to get 237 MB of archives.
 80s After this operation, 339 MB of additional disk space will be used.
 80s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 80s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 80s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 80s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 80s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 80s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 80s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 80s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 80s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 80s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 80s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 80s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 80s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 80s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 80s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 80s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 80s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 80s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 80s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 80s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 80s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 80s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 80s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 80s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 80s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 80s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 80s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 80s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 80s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 80s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 80s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 80s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 80s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 80s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 80s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 81s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 81s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 81s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 81s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 81s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 81s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 81s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 81s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 81s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 81s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 81s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 81s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 81s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 81s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 81s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 81s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 81s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 81s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 81s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 81s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 81s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 81s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 81s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 81s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 81s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 81s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 81s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 81s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 81s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 81s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 81s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 81s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 81s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 81s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 81s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 81s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 81s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 81s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 81s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 81s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 81s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 81s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 81s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 81s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 81s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 81s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 81s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 84s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 84s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 84s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 84s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 84s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 84s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 84s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 84s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 85s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 85s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 85s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 85s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 85s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 85s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 85s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 85s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 85s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 85s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 85s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 85s Fetched 237 MB in 5s (45.8 MB/s)
 85s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 85s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 85s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 85s Setting up debianutils (5.23.2build1) ...
 86s (Reading database ... 
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 86s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 86s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 86s Setting up dash (0.5.12-12ubuntu3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 86s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 86s Setting up findutils (4.10.0-3build2) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 86s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 86s Setting up sed (4.9-2build3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 86s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 86s Setting up tar (1.35+dfsg-3.1build2) ...
 86s (Reading database ... 
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 95s man-db.service is a disabled or a static unit not running, not starting it.
 95s Setting up libjansson4:amd64 (2.14-2build4) ...
 95s Setting up libglib2.0-data (2.87.2-2) ...
 95s Setting up pollinate (4.33-4ubuntu5) ...
105s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
105s Setting up libwrap0:amd64 (7.6.q-36build2) ...
105s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
107s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
107s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
107s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
107s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
107s Setting up patch (2.8-2build1) ...
107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
107s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
107s Setting up lsof (4.99.4+dfsg-2build2) ...
107s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
107s Setting up dracut-install (109-11ubuntu1) ...
107s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
107s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
107s Setting up pnp.ids (0.394-1build1) ...
107s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
107s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
107s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
107s Setting up mawk (1.3.4.20260129-1) ...
107s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
107s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
107s Setting up linux-image-virtual (6.19.0-3.3) ...
107s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
107s Setting up libbsd0:amd64 (0.12.2-2build2) ...
107s Setting up libdrm-common (2.4.131-1) ...
107s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
107s Setting up dbus-bin (1.16.2-2ubuntu3) ...
107s Setting up libonig5:amd64 (6.9.10-1build1) ...
107s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
107s Setting up ethtool (1:6.15-3build1) ...
107s Setting up python3-referencing (0.36.2-1ubuntu2) ...
107s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
107s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
107s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
107s Setting up tcpdump (4.99.5-2ubuntu3) ...
107s Setting up linux-image-generic (6.19.0-3.3) ...
107s Setting up wget (1.25.0-2ubuntu4) ...
107s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
107s Setting up iptables (1.8.11-2ubuntu3) ...
107s Setting up iproute2 (6.18.0-1ubuntu1) ...
107s Setting up linux-headers-generic (6.19.0-3.3) ...
107s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
107s Setting up hwdata (0.394-1build1) ...
107s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
107s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
107s No schema files found: doing nothing.
107s Setting up dbus (1.16.2-2ubuntu3) ...
107s A reboot is required to replace the running dbus-daemon.
107s Please reboot the system when convenient.
108s Setting up shared-mime-info (2.4-5build3) ...
108s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
108s Setting up pciutils (1:3.14.0-1build2) ...
108s Setting up python3-markdown-it (3.0.0-3build1) ...
108s Setting up libdrm2:amd64 (2.4.131-1) ...
108s Setting up libpython3.14:amd64 (3.14.2-1) ...
108s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
108s Setting up linux-tools-common (6.19.0-3.3) ...
108s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
108s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
108s Setting up apt (3.1.15) ...
109s Setting up linux-headers-virtual (6.19.0-3.3) ...
109s Setting up linux-generic (6.19.0-3.3) ...
109s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
109s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
109s Setting up ubuntu-standard (1.564) ...
109s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
109s Setting up linux-virtual (6.19.0-3.3) ...
109s Setting up linux-perf (6.19.0-3.3) ...
109s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
109s Processing triggers for debianutils (5.23.2build1) ...
109s Processing triggers for install-info (7.2-5) ...
109s Processing triggers for initramfs-tools (0.150ubuntu7) ...
109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
113s Processing triggers for libc-bin (2.42-2ubuntu4) ...
113s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
113s /etc/kernel/postinst.d/initramfs-tools:
113s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
117s /etc/kernel/postinst.d/zz-update-grub:
117s Sourcing file `/etc/default/grub'
117s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
117s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
117s Generating grub configuration file ...
117s Found linux image: /boot/vmlinuz-6.19.0-3-generic
117s Found initrd image: /boot/initrd.img-6.19.0-3-generic
117s Found linux image: /boot/vmlinuz-6.18.0-9-generic
117s Found initrd image: /boot/initrd.img-6.18.0-9-generic
118s Warning: os-prober will not be executed to detect other bootable partitions.
118s Systems on them will not be added to the GRUB boot configuration.
118s Check GRUB_DISABLE_OS_PROBER documentation entry.
118s Adding boot menu entry for UEFI Firmware Settings ...
118s done
118s autopkgtest [04:22:16]: upgrading testbed (apt dist-upgrade and autopurge)
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Calculating upgrade...
119s The following package was automatically installed and is no longer required:
119s   libpython3.13
119s Use 'sudo apt autoremove' to remove it.
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Solving dependencies...
119s The following packages will be REMOVED:
119s   libpython3.13*
120s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
120s After this operation, 7599 kB disk space will be freed.
120s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
120s Removing libpython3.13:amd64 (3.13.11-1) ...
120s Processing triggers for libc-bin (2.42-2ubuntu4) ...
120s autopkgtest [04:22:18]: rebooting testbed after setup commands that affected boot
148s autopkgtest [04:22:46]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
150s autopkgtest [04:22:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegenet
151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegenet 2.1.11-1 (dsc) [2322 B]
151s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegenet 2.1.11-1 (tar) [1701 kB]
151s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegenet 2.1.11-1 (diff) [4948 B]
151s gpgv: Signature made Fri Feb 14 02:50:24 2025 UTC
151s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
151s gpgv:                issuer "plessy@debian.org"
151s gpgv: Can't check signature: No public key
151s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegenet_2.1.11-1.dsc: no acceptable signature found
152s autopkgtest [04:22:50]: testing package r-cran-adegenet version 2.1.11-1
152s autopkgtest [04:22:50]: build not needed
153s autopkgtest [04:22:51]: test run-unit-test: preparing testbed
153s Reading package lists...
153s Building dependency tree...
153s Reading state information...
154s Solving dependencies...
154s The following NEW packages will be installed:
154s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
154s   fonts-font-awesome fonts-glyphicons-halflings gdal-data gdal-plugins
154s   javascript-common libabsl20260107 libaec0 libamd3 libaom3 libarmadillo15
154s   libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64
154s   libcolamd3 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1
154s   libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1
154s   libgeotiff5 libgfortran5 libgif7 libglpk40 libgomp1 libgpgmepp6t64
154s   libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310
154s   libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwy1t64 libice6
154s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3
154s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
154s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
154s   libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker
154s   libjxl0.11 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3
154s   liblcms2-2 liblerc4 libltdl7 libminizip1t64 libmuparser2v5 libmysqlclient24
154s   libnetcdf22 libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0
154s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
154s   libpoppler147 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6
154s   libsnappy1v5 libspatialite8t64 libsuitesparseconfig7 libsuperlu7 libsz2
154s   libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libudunits2-0
154s   libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0
154s   libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 libyuv0 mysql-common
154s   node-bootstrap-sass node-html5shiv node-normalize.css proj-data r-base-core
154s   r-cran-ade4 r-cran-adegenet r-cran-ape r-cran-base64enc r-cran-boot
154s   r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class
154s   r-cran-classint r-cran-cli r-cran-cluster r-cran-commonmark r-cran-cpp11
154s   r-cran-crayon r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj
154s   r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi
154s   r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics
154s   r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-htmltools r-cran-httpuv
154s   r-cran-igraph r-cran-interp r-cran-isoband r-cran-jquerylib r-cran-jsonlite
154s   r-cran-kernsmooth r-cran-labeling r-cran-later r-cran-lattice
154s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-maps r-cran-mass
154s   r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme
154s   r-cran-permute r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig
154s   r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx
154s   r-cran-promises r-cran-proxy r-cran-ps r-cran-r6 r-cran-rappdirs
154s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen
154s   r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-s2 r-cran-s7
154s   r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr r-cran-sf
154s   r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spdata r-cran-spdep
154s   r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble
154s   r-cran-tidyselect r-cran-units r-cran-utf8 r-cran-vctrs r-cran-vegan
154s   r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xtable
154s   unixodbc-common unzip x11-common xdg-utils zip
154s 0 upgraded, 228 newly installed, 0 to remove and 0 not upgraded.
154s Need to get 187 MB of archives.
154s After this operation, 433 MB of additional disk space will be used.
154s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
154s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
154s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
154s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
154s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
154s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
154s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
154s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB]
154s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB]
154s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
154s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB]
154s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB]
154s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
154s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB]
154s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB]
154s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB]
154s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
154s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
154s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
154s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB]
154s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB]
154s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB]
154s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB]
154s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB]
154s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
154s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
154s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB]
154s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB]
154s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB]
154s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB]
154s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
154s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
154s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
154s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
154s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
154s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB]
155s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB]
155s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
155s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB]
155s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
155s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB]
155s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB]
155s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB]
155s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB]
155s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB]
155s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB]
155s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
155s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
155s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
155s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
155s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
155s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB]
155s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB]
155s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB]
155s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB]
155s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB]
155s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB]
155s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB]
155s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B]
155s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB]
155s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB]
155s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB]
155s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB]
155s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB]
155s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB]
155s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB]
155s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB]
155s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB]
155s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B]
155s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB]
155s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB]
155s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB]
155s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB]
155s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB]
155s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B]
155s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB]
155s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB]
155s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB]
155s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB]
155s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB]
155s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB]
155s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4build1 [189 kB]
155s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB]
155s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB]
156s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB]
156s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB]
156s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
156s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
156s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
156s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
156s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
156s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
156s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
156s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
156s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
156s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
156s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
156s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
156s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
156s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
156s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
156s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
156s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
156s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
156s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
156s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
156s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
156s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
156s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
156s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
156s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
156s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
156s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
156s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
156s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
156s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB]
156s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB]
156s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
156s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
156s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
156s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
156s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
156s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
156s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
156s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
157s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
157s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pixmap all 0.4-14-1 [217 kB]
157s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
157s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
157s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
157s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
157s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
157s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
157s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ade4 amd64 1.7-23-1 [5414 kB]
157s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
157s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
157s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
157s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
157s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
157s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
157s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
157s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
157s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
158s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-igraph amd64 2.1.4-1build1 [5218 kB]
158s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
158s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
158s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ape amd64 5.8-1-1 [2918 kB]
158s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
158s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
158s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
158s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
158s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
158s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
158s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
158s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
158s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
158s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
158s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
158s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
158s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
158s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
158s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
158s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
158s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
158s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
158s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
158s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
158s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
158s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
159s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
159s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
159s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
159s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
159s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
159s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
159s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
159s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
159s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
159s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
159s Get:180 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
159s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-segmented all 2.1-4-1 [1376 kB]
160s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-seqinr amd64 4.2-36-1 [4015 kB]
160s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-boot all 1.3-32-1 [636 kB]
160s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
160s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
160s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
160s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
160s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
160s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
160s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
160s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
160s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
160s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
160s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
160s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-permute all 0.9-8-1 [237 kB]
160s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB]
160s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB]
161s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vegan amd64 2.6-10+dfsg-3 [3137 kB]
161s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-adegenet amd64 2.1.11-1 [2728 kB]
161s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
161s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
161s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
161s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
161s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB]
161s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB]
161s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB]
161s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
161s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB]
161s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
162s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
162s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
162s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
162s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
162s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB]
162s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB]
162s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB]
162s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
162s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
162s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
162s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
162s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB]
162s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB]
162s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB]
163s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB]
163s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spdata all 2.3.4-1 [3684 kB]
163s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spdep amd64 1.3-5+dfsg-1 [2167 kB]
163s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
163s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
164s Preconfiguring packages ...
164s Fetched 187 MB in 9s (19.8 MB/s)
164s Selecting previously unselected package fonts-dejavu-mono.
164s (Reading database ... 
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(Reading database ... 125269 files and directories currently installed.)
164s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ...
164s Unpacking fonts-dejavu-mono (2.37-8build1) ...
164s Selecting previously unselected package fonts-dejavu-core.
164s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ...
164s Unpacking fonts-dejavu-core (2.37-8build1) ...
164s Selecting previously unselected package fontconfig-config.
164s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
164s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
164s Selecting previously unselected package libfontconfig1:amd64.
164s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
164s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
164s Selecting previously unselected package fontconfig.
164s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
164s Unpacking fontconfig (2.17.1-3ubuntu1) ...
164s Selecting previously unselected package fonts-font-awesome.
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166s Selecting previously unselected package r-cran-mass.
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167s Selecting previously unselected package r-cran-pkgkitten.
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167s Selecting previously unselected package r-cran-rcpp.
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167s Selecting previously unselected package r-cran-rcpparmadillo.
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167s Selecting previously unselected package r-cran-ade4.
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167s Selecting previously unselected package r-cran-cli.
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167s Selecting previously unselected package r-cran-rlang.
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167s Selecting previously unselected package r-cran-matrix.
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167s Selecting previously unselected package r-cran-pkgconfig.
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167s Selecting previously unselected package r-cran-glue.
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167s Selecting previously unselected package r-cran-vctrs.
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167s Selecting previously unselected package r-cran-cpp11.
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167s Selecting previously unselected package r-cran-igraph.
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167s Selecting previously unselected package r-cran-nlme.
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167s Selecting previously unselected package r-cran-digest.
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167s Selecting previously unselected package r-cran-ape.
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167s Selecting previously unselected package r-cran-later.
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167s Selecting previously unselected package r-cran-fastmap.
167s Preparing to unpack .../148-r-cran-fastmap_1.2.0-1_amd64.deb ...
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167s Selecting previously unselected package r-cran-r6.
167s Preparing to unpack .../149-r-cran-r6_2.6.1-1_all.deb ...
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167s Selecting previously unselected package r-cran-promises.
167s Preparing to unpack .../150-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
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167s Selecting previously unselected package r-cran-httpuv.
167s Preparing to unpack .../151-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
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167s Selecting previously unselected package r-cran-mime.
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167s Selecting previously unselected package r-cran-jsonlite.
167s Preparing to unpack .../153-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
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167s Selecting previously unselected package r-cran-xtable.
167s Preparing to unpack .../154-r-cran-xtable_1%3a1.8-4-2build1_all.deb ...
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167s Selecting previously unselected package r-cran-base64enc.
167s Preparing to unpack .../155-r-cran-base64enc_0.1-3-3build1_amd64.deb ...
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167s Selecting previously unselected package r-cran-htmltools.
167s Preparing to unpack .../156-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
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167s Selecting previously unselected package r-cran-fontawesome.
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167s Selecting previously unselected package r-cran-sourcetools.
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167s Selecting previously unselected package r-cran-crayon.
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167s Selecting previously unselected package r-cran-withr.
167s Preparing to unpack .../160-r-cran-withr_3.0.2+dfsg-1_all.deb ...
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167s Selecting previously unselected package r-cran-commonmark.
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167s Unpacking r-cran-commonmark (1.9.5-1) ...
167s Selecting previously unselected package r-cran-cachem.
167s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_amd64.deb ...
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167s Selecting previously unselected package r-cran-jquerylib.
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167s Selecting previously unselected package r-cran-memoise.
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167s Selecting previously unselected package r-cran-fs.
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167s Selecting previously unselected package r-cran-rappdirs.
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167s Selecting previously unselected package r-cran-sass.
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167s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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167s Selecting previously unselected package r-cran-shiny.
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168s Selecting previously unselected package r-cran-gtable.
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168s Selecting previously unselected package r-cran-isoband.
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168s Selecting previously unselected package r-cran-s7.
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168s Selecting previously unselected package r-cran-farver.
168s Preparing to unpack .../174-r-cran-farver_2.1.2-1_amd64.deb ...
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168s Selecting previously unselected package r-cran-labeling.
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168s Selecting previously unselected package r-cran-rcolorbrewer.
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168s Selecting previously unselected package r-cran-viridislite.
168s Preparing to unpack .../177-r-cran-viridislite_0.4.3-1_all.deb ...
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168s Selecting previously unselected package r-cran-scales.
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168s Selecting previously unselected package r-cran-ggplot2.
168s Preparing to unpack .../179-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ...
168s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ...
168s Selecting previously unselected package r-cran-segmented.
168s Preparing to unpack .../180-r-cran-segmented_2.1-4-1_all.deb ...
168s Unpacking r-cran-segmented (2.1-4-1) ...
168s Selecting previously unselected package r-cran-seqinr.
168s Preparing to unpack .../181-r-cran-seqinr_4.2-36-1_amd64.deb ...
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168s Selecting previously unselected package r-cran-boot.
168s Preparing to unpack .../182-r-cran-boot_1.3-32-1_all.deb ...
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168s Selecting previously unselected package r-cran-plyr.
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168s Selecting previously unselected package r-cran-stringi.
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168s Selecting previously unselected package r-cran-reshape2.
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168s Selecting previously unselected package r-cran-generics.
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168s Selecting previously unselected package r-cran-utf8.
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168s Selecting previously unselected package r-cran-pillar.
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168s Selecting previously unselected package r-cran-fansi.
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168s Selecting previously unselected package r-cran-tibble.
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168s Selecting previously unselected package r-cran-tidyselect.
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168s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
168s Selecting previously unselected package r-cran-dplyr.
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168s Selecting previously unselected package r-cran-permute.
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168s Selecting previously unselected package r-cran-cluster.
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168s Selecting previously unselected package r-cran-mgcv.
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168s Selecting previously unselected package r-cran-vegan.
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168s Selecting previously unselected package r-cran-adegenet.
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169s Unpacking r-cran-adegenet (2.1.11-1) ...
169s Selecting previously unselected package r-cran-brio.
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169s Unpacking r-cran-brio (1.1.5-1) ...
169s Selecting previously unselected package r-cran-ps.
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169s Selecting previously unselected package r-cran-processx.
169s Preparing to unpack .../201-r-cran-processx_3.8.6-1_amd64.deb ...
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169s Selecting previously unselected package r-cran-callr.
169s Preparing to unpack .../202-r-cran-callr_3.7.6-1_all.deb ...
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169s Selecting previously unselected package r-cran-class.
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169s Unpacking r-cran-class (7.3-23-1) ...
169s Selecting previously unselected package r-cran-proxy.
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169s Unpacking r-cran-proxy (0.4-27-1) ...
169s Selecting previously unselected package r-cran-e1071.
169s Preparing to unpack .../205-r-cran-e1071_1.7-17-1_amd64.deb ...
169s Unpacking r-cran-e1071 (1.7-17-1) ...
169s Selecting previously unselected package r-cran-kernsmooth.
169s Preparing to unpack .../206-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ...
169s Unpacking r-cran-kernsmooth (2.23-26-1build1) ...
169s Selecting previously unselected package r-cran-classint.
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169s Unpacking r-cran-classint (0.4-11+dfsg-1) ...
169s Selecting previously unselected package r-cran-dbi.
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169s Selecting previously unselected package r-cran-deldir.
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169s Selecting previously unselected package r-cran-desc.
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169s Selecting previously unselected package r-cran-diffobj.
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172s Setting up r-cran-vctrs (0.6.5-1) ...
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172s Setting up r-cran-desc (1.4.3-1) ...
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172s Setting up r-cran-fontawesome (0.5.3-1) ...
172s Setting up r-cran-igraph (2.1.4-1build1) ...
172s Setting up r-cran-ade4 (1.7-23-1) ...
172s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
172s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
172s Setting up r-cran-reshape2 (1.4.4-2build2) ...
172s Setting up r-cran-interp (1.1-6-1) ...
172s Setting up r-cran-memoise (2.0.1-1build1) ...
172s Setting up r-cran-promises (1.3.2+dfsg-1) ...
172s Setting up r-cran-e1071 (1.7-17-1) ...
172s Setting up r-cran-vegan (2.6-10+dfsg-3) ...
172s Setting up r-cran-pkgbuild (1.4.8-1) ...
172s Setting up r-cran-dplyr (1.1.4-4) ...
172s Setting up r-cran-pkgload (1.4.1-1) ...
172s Setting up r-cran-seqinr (4.2-36-1) ...
172s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
172s Setting up r-cran-testthat (3.2.3-1) ...
172s Setting up r-cran-classint (0.4-11+dfsg-1) ...
172s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
172s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
172s Setting up r-cran-adegenet (2.1.11-1) ...
172s Setting up libheif1:amd64 (1.21.2-1) ...
172s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ...
172s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ...
172s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ...
172s Setting up r-cran-sf (1.0-19+dfsg-2build2) ...
172s Setting up r-cran-spdep (1.3-5+dfsg-1) ...
172s Processing triggers for install-info (7.2-5) ...
172s Processing triggers for libc-bin (2.42-2ubuntu4) ...
172s Processing triggers for man-db (2.13.1-1build1) ...
173s autopkgtest [04:23:11]: test run-unit-test: [-----------------------
173s 
173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
173s Copyright (C) 2025 The R Foundation for Statistical Computing
173s Platform: x86_64-pc-linux-gnu
173s 
173s R is free software and comes with ABSOLUTELY NO WARRANTY.
173s You are welcome to redistribute it under certain conditions.
173s Type 'license()' or 'licence()' for distribution details.
173s 
173s R is a collaborative project with many contributors.
173s Type 'contributors()' for more information and
173s 'citation()' on how to cite R or R packages in publications.
173s 
173s Type 'demo()' for some demos, 'help()' for on-line help, or
173s 'help.start()' for an HTML browser interface to help.
173s Type 'q()' to quit R.
173s 
173s > library(testthat)
173s > suppressPackageStartupMessages(library(adegenet))
175s > test_check("adegenet")
175s 
175s  Converting data from a genind to a genpop object... 
175s 
175s ...done.
175s 
176s [ FAIL 0 | WARN 0 | SKIP 30 | PASS 13 ]
176s 
176s == Skipped tests (30) ==========================================================
176s * On CRAN (30): 'test-findclust.R:4:3', 'test-prop.R:13:3',
176s   'test-seppop.R:6:3', 'test-seppop.R:14:3', 'test-seppop.R:23:3',
176s   'test-seppop.R:33:3', 'test-seppop.R:56:3', 'test-seppop.R:65:3',
176s   'test-seppop.R:75:3', 'test_compoplot.R:6:3', 'test_compoplot.R:11:3',
176s   'test_compoplot.R:16:3', 'test_compoplot.R:21:3', 'test_compoplot.R:26:3',
176s   'test_constructors.R:4:3', 'test_constructors.R:11:3',
176s   'test_hierarchy.R:4:3', 'test_hierarchy.R:27:3', 'test_hierarchy.R:38:3',
176s   'test_repool.R:7:3', 'test_snapclust.R:5:5', 'test_snapclust.R:31:5',
176s   'test_snapclust.R:65:3', 'test_snapclust.R:78:3', 'test_snapclust.R:88:3',
176s   'test_subset.R:6:3', 'test_subset.R:14:3', 'test_summary.R:4:3',
176s   'test_xval.R:15:3', 'test_xval.R:26:3'
176s 
176s [ FAIL 0 | WARN 0 | SKIP 30 | PASS 13 ]
176s > 
176s autopkgtest [04:23:14]: test run-unit-test: -----------------------]
177s autopkgtest [04:23:15]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
177s run-unit-test        PASS
177s autopkgtest [04:23:15]: test pkg-r-autopkgtest: preparing testbed
177s Reading package lists...
177s Building dependency tree...
177s Reading state information...
177s Solving dependencies...
177s The following NEW packages will be installed:
177s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
177s   dctrl-tools g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
177s   gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
177s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
177s   libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
177s   libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev
177s   libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
177s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0
177s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0
177s   libreadline-dev libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev
177s   linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto
177s   zlib1g-dev
177s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
177s Need to get 112 MB of archives.
177s After this operation, 402 MB of additional disk space will be used.
177s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
178s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
178s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
178s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
178s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
178s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
178s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
178s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
178s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
178s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
178s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
178s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
178s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
179s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
179s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
179s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
179s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
179s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
179s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
179s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
179s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
180s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
180s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
180s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
180s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
180s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
180s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
180s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
180s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
180s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
180s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
180s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
180s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
181s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
181s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
181s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
181s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
181s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
181s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
181s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
181s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
181s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
181s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
181s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
181s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
182s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
182s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
182s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
182s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
182s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
182s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
182s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
182s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
182s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
182s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
182s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
182s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
182s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
182s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
182s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
182s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
182s Fetched 112 MB in 4s (26.1 MB/s)
182s Selecting previously unselected package libc-dev-bin.
182s (Reading database ... 
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(Reading database ... 142705 files and directories currently installed.)
182s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
182s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
182s Selecting previously unselected package linux-libc-dev:amd64.
182s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_amd64.deb ...
182s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
182s Selecting previously unselected package libcrypt-dev:amd64.
182s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
182s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
182s Selecting previously unselected package rpcsvc-proto.
182s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
182s Unpacking rpcsvc-proto (1.4.3-1build1) ...
182s Selecting previously unselected package libc6-dev:amd64.
182s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_amd64.deb ...
182s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
182s Selecting previously unselected package libisl23:amd64.
182s Preparing to unpack .../05-libisl23_0.27-1build1_amd64.deb ...
182s Unpacking libisl23:amd64 (0.27-1build1) ...
182s Selecting previously unselected package libmpc3:amd64.
182s Preparing to unpack .../06-libmpc3_1.3.1-2_amd64.deb ...
182s Unpacking libmpc3:amd64 (1.3.1-2) ...
182s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
182s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
182s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
182s Selecting previously unselected package cpp-15.
182s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
182s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
182s Selecting previously unselected package cpp-x86-64-linux-gnu.
182s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
182s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
182s Selecting previously unselected package cpp.
182s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
182s Unpacking cpp (4:15.2.0-4ubuntu1) ...
182s Selecting previously unselected package libcc1-0:amd64.
182s Preparing to unpack .../11-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
182s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
182s Selecting previously unselected package libitm1:amd64.
182s Preparing to unpack .../12-libitm1_16-20260208-1ubuntu1_amd64.deb ...
182s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
182s Selecting previously unselected package libasan8:amd64.
182s Preparing to unpack .../13-libasan8_16-20260208-1ubuntu1_amd64.deb ...
182s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
183s Selecting previously unselected package liblsan0:amd64.
183s Preparing to unpack .../14-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
183s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
183s Selecting previously unselected package libtsan2:amd64.
183s Preparing to unpack .../15-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
183s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
183s Selecting previously unselected package libubsan1:amd64.
183s Preparing to unpack .../16-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
183s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
183s Selecting previously unselected package libhwasan0:amd64.
183s Preparing to unpack .../17-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
183s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
183s Selecting previously unselected package libquadmath0:amd64.
183s Preparing to unpack .../18-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
183s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
183s Selecting previously unselected package libgcc-15-dev:amd64.
183s Preparing to unpack .../19-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
183s Preparing to unpack .../20-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package gcc-15.
183s Preparing to unpack .../21-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package gcc-x86-64-linux-gnu.
183s Preparing to unpack .../22-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
183s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
183s Selecting previously unselected package gcc.
183s Preparing to unpack .../23-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
183s Unpacking gcc (4:15.2.0-4ubuntu1) ...
183s Selecting previously unselected package libstdc++-15-dev:amd64.
183s Preparing to unpack .../24-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package g++-15-x86-64-linux-gnu.
183s Preparing to unpack .../25-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package g++-15.
183s Preparing to unpack .../26-g++-15_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking g++-15 (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package g++-x86-64-linux-gnu.
183s Preparing to unpack .../27-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
183s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
183s Selecting previously unselected package g++.
183s Preparing to unpack .../28-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
183s Unpacking g++ (4:15.2.0-4ubuntu1) ...
183s Selecting previously unselected package build-essential.
183s Preparing to unpack .../29-build-essential_12.12ubuntu2_amd64.deb ...
183s Unpacking build-essential (12.12ubuntu2) ...
183s Selecting previously unselected package dctrl-tools.
183s Preparing to unpack .../30-dctrl-tools_2.24-3build4_amd64.deb ...
183s Unpacking dctrl-tools (2.24-3build4) ...
183s Selecting previously unselected package libgfortran-15-dev:amd64.
183s Preparing to unpack .../31-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
183s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
183s Preparing to unpack .../32-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
183s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
184s Selecting previously unselected package gfortran-15.
184s Preparing to unpack .../33-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
184s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
184s Selecting previously unselected package gfortran-x86-64-linux-gnu.
184s Preparing to unpack .../34-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
184s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
184s Selecting previously unselected package gfortran.
184s Preparing to unpack .../35-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
184s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
184s Selecting previously unselected package icu-devtools.
184s Preparing to unpack .../36-icu-devtools_78.2-1ubuntu1_amd64.deb ...
184s Unpacking icu-devtools (78.2-1ubuntu1) ...
184s Selecting previously unselected package libblas-dev:amd64.
184s Preparing to unpack .../37-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
184s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
184s Selecting previously unselected package libbz2-dev:amd64.
184s Preparing to unpack .../38-libbz2-dev_1.0.8-6build2_amd64.deb ...
184s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
184s Selecting previously unselected package libdeflate-dev:amd64.
184s Preparing to unpack .../39-libdeflate-dev_1.23-2build1_amd64.deb ...
184s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
184s Selecting previously unselected package libicu-dev:amd64.
184s Preparing to unpack .../40-libicu-dev_78.2-1ubuntu1_amd64.deb ...
184s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
184s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
184s Preparing to unpack .../41-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ...
184s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
184s Selecting previously unselected package libjpeg8-dev:amd64.
184s Preparing to unpack .../42-libjpeg8-dev_8c-2ubuntu12_amd64.deb ...
184s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ...
184s Selecting previously unselected package libjpeg-dev:amd64.
184s Preparing to unpack .../43-libjpeg-dev_8c-2ubuntu12_amd64.deb ...
184s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ...
184s Selecting previously unselected package liblapack-dev:amd64.
184s Preparing to unpack .../44-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ...
184s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
184s Selecting previously unselected package libncurses-dev:amd64.
184s Preparing to unpack .../45-libncurses-dev_6.6+20251231-1_amd64.deb ...
184s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ...
184s Selecting previously unselected package libpcre2-16-0:amd64.
184s Preparing to unpack .../46-libpcre2-16-0_10.46-1_amd64.deb ...
184s Unpacking libpcre2-16-0:amd64 (10.46-1) ...
184s Selecting previously unselected package libpcre2-32-0:amd64.
184s Preparing to unpack .../47-libpcre2-32-0_10.46-1_amd64.deb ...
184s Unpacking libpcre2-32-0:amd64 (10.46-1) ...
184s Selecting previously unselected package libpcre2-posix3:amd64.
184s Preparing to unpack .../48-libpcre2-posix3_10.46-1_amd64.deb ...
184s Unpacking libpcre2-posix3:amd64 (10.46-1) ...
184s Selecting previously unselected package libpcre2-dev:amd64.
184s Preparing to unpack .../49-libpcre2-dev_10.46-1_amd64.deb ...
184s Unpacking libpcre2-dev:amd64 (10.46-1) ...
184s Selecting previously unselected package libpkgconf3:amd64.
184s Preparing to unpack .../50-libpkgconf3_1.8.1-4build1_amd64.deb ...
184s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ...
184s Selecting previously unselected package zlib1g-dev:amd64.
184s Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ...
184s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
184s Selecting previously unselected package libpng-dev:amd64.
184s Preparing to unpack .../52-libpng-dev_1.6.54-1_amd64.deb ...
184s Unpacking libpng-dev:amd64 (1.6.54-1) ...
184s Selecting previously unselected package libreadline-dev:amd64.
184s Preparing to unpack .../53-libreadline-dev_8.3-3_amd64.deb ...
184s Unpacking libreadline-dev:amd64 (8.3-3) ...
184s Selecting previously unselected package libzstd-dev:amd64.
184s Preparing to unpack .../54-libzstd-dev_1.5.7+dfsg-3_amd64.deb ...
184s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ...
184s Selecting previously unselected package liblzma-dev:amd64.
184s Preparing to unpack .../55-liblzma-dev_5.8.2-2_amd64.deb ...
184s Unpacking liblzma-dev:amd64 (5.8.2-2) ...
184s Selecting previously unselected package pkgconf-bin.
184s Preparing to unpack .../56-pkgconf-bin_1.8.1-4build1_amd64.deb ...
184s Unpacking pkgconf-bin (1.8.1-4build1) ...
184s Selecting previously unselected package pkgconf:amd64.
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186s autopkgtest [04:23:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
186s autopkgtest [04:23:24]: test pkg-r-autopkgtest: [-----------------------
186s Test: Try to load the R library adegenet
186s 
186s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
186s Copyright (C) 2025 The R Foundation for Statistical Computing
186s Platform: x86_64-pc-linux-gnu
186s 
186s R is free software and comes with ABSOLUTELY NO WARRANTY.
186s You are welcome to redistribute it under certain conditions.
186s Type 'license()' or 'licence()' for distribution details.
186s 
186s R is a collaborative project with many contributors.
186s Type 'contributors()' for more information and
186s 'citation()' on how to cite R or R packages in publications.
186s 
186s Type 'demo()' for some demos, 'help()' for on-line help, or
186s 'help.start()' for an HTML browser interface to help.
186s Type 'q()' to quit R.
186s 
186s > library('adegenet')
186s Loading required package: ade4
188s 
188s    /// adegenet 2.1.11 is loaded ////////////
188s 
188s    > overview: '?adegenet'
188s    > tutorials/doc/questions: 'adegenetWeb()' 
188s    > bug reports/feature requests: adegenetIssues()
188s 
188s 
188s > 
188s autopkgtest [04:23:26]: test pkg-r-autopkgtest: -----------------------]
188s autopkgtest [04:23:26]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
188s pkg-r-autopkgtest    PASS
189s autopkgtest [04:23:27]: @@@@@@@@@@@@@@@@@@@@ summary
189s run-unit-test        PASS
189s pkg-r-autopkgtest    PASS