0s autopkgtest [04:19:29]: starting date and time: 2026-02-10 04:19:29+0000
  0s autopkgtest [04:19:29]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:19:29]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4unjtccn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-tcgabiolinks --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-7.secgroup --name adt-resolute-amd64-r-bioc-tcgabiolinks-20260210-041929-juju-7f2275-prod-proposed-migration-environment-2-ee577227-9ee3-4e31-8993-a63eb960092b --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-bioc-tcgabiolinks-20260210-041929-juju-7f2275-prod-proposed-migration-environment-2-ee577227-9ee3-4e31-8993-a63eb960092b from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 74s autopkgtest [04:20:43]: testbed dpkg architecture: amd64
 74s autopkgtest [04:20:43]: testbed apt version: 3.1.14
 75s autopkgtest [04:20:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [04:20:44]: testbed release detected to be: None
 75s autopkgtest [04:20:44]: updating testbed package index (apt update)
 76s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 76s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 76s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 77s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 77s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 77s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 77s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 77s Fetched 5189 kB in 1s (4841 kB/s)
 78s Reading package lists...
 78s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 79s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 79s Reading package lists...
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 79s Calculating upgrade...
 80s The following package was automatically installed and is no longer required:
 80s   libpython3.13
 80s Use 'sudo apt autoremove' to remove it.
 80s The following NEW packages will be installed:
 80s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 80s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 80s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 80s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 80s The following packages will be upgraded:
 80s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 80s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 80s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 80s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 80s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 80s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 80s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 80s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 80s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 80s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 80s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 80s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 80s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 80s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 80s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 80s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 80s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 80s Need to get 237 MB of archives.
 80s After this operation, 339 MB of additional disk space will be used.
 80s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 80s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 80s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 80s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 80s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 80s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 80s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 80s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 80s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 80s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 80s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 80s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 80s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 80s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 80s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 80s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 80s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 80s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 80s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 80s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 80s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 80s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 80s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 80s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 80s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 80s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 80s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 80s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 80s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 80s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 80s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 80s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 80s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 80s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 80s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 80s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 80s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 80s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 80s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 80s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 80s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 80s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 80s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 80s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 80s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 80s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 80s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 80s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 80s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 80s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 80s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 80s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 80s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 80s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 80s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 80s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 80s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 80s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 80s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 80s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 80s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 80s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 80s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 80s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 80s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 80s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 80s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 80s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 80s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 80s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 80s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 80s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 80s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 80s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 80s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 80s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 80s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 80s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 81s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 81s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 81s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 81s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
124s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
124s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
124s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
124s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
125s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
125s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
125s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
125s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
125s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
126s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
126s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
126s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
126s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
126s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
126s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
126s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
126s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
126s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
126s dpkg-preconfigure: unable to re-open stdin: No such file or directory
126s Fetched 237 MB in 46s (5112 kB/s)
126s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
126s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
126s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
126s Setting up debianutils (5.23.2build1) ...
127s (Reading database ... 
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127s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
127s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
127s Setting up dash (0.5.12-12ubuntu3) ...
127s (Reading database ... 
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127s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
127s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
127s Setting up findutils (4.10.0-3build2) ...
127s (Reading database ... 
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127s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
127s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
127s Setting up sed (4.9-2build3) ...
127s (Reading database ... 
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127s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
127s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
127s Setting up tar (1.35+dfsg-3.1build2) ...
127s (Reading database ... 
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137s man-db.service is a disabled or a static unit not running, not starting it.
137s Setting up libjansson4:amd64 (2.14-2build4) ...
137s Setting up libglib2.0-data (2.87.2-2) ...
137s Setting up pollinate (4.33-4ubuntu5) ...
148s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
148s Setting up libwrap0:amd64 (7.6.q-36build2) ...
148s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
149s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
149s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
149s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
149s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
149s Setting up patch (2.8-2build1) ...
149s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
149s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
149s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
149s Setting up lsof (4.99.4+dfsg-2build2) ...
149s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
149s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
149s Setting up dracut-install (109-11ubuntu1) ...
149s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
149s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
149s Setting up pnp.ids (0.394-1build1) ...
149s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
149s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
149s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
149s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
149s Setting up mawk (1.3.4.20260129-1) ...
149s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
149s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
149s Setting up linux-image-virtual (6.19.0-3.3) ...
149s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
149s Setting up libbsd0:amd64 (0.12.2-2build2) ...
149s Setting up libdrm-common (2.4.131-1) ...
149s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
149s Setting up dbus-bin (1.16.2-2ubuntu3) ...
149s Setting up libonig5:amd64 (6.9.10-1build1) ...
149s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
149s Setting up ethtool (1:6.15-3build1) ...
149s Setting up python3-referencing (0.36.2-1ubuntu2) ...
149s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
149s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
149s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
149s Setting up tcpdump (4.99.5-2ubuntu3) ...
149s Setting up linux-image-generic (6.19.0-3.3) ...
149s Setting up wget (1.25.0-2ubuntu4) ...
149s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
149s Setting up iptables (1.8.11-2ubuntu3) ...
149s Setting up iproute2 (6.18.0-1ubuntu1) ...
150s Setting up linux-headers-generic (6.19.0-3.3) ...
150s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
150s Setting up hwdata (0.394-1build1) ...
150s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
150s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
150s No schema files found: doing nothing.
150s Setting up dbus (1.16.2-2ubuntu3) ...
150s A reboot is required to replace the running dbus-daemon.
150s Please reboot the system when convenient.
150s Setting up shared-mime-info (2.4-5build3) ...
151s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
151s Setting up pciutils (1:3.14.0-1build2) ...
151s Setting up python3-markdown-it (3.0.0-3build1) ...
151s Setting up libdrm2:amd64 (2.4.131-1) ...
151s Setting up libpython3.14:amd64 (3.14.2-1) ...
151s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
151s Setting up linux-tools-common (6.19.0-3.3) ...
151s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
151s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
151s Setting up apt (3.1.15) ...
151s Setting up linux-headers-virtual (6.19.0-3.3) ...
151s Setting up linux-generic (6.19.0-3.3) ...
151s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
151s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
151s Setting up ubuntu-standard (1.564) ...
151s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
151s Setting up linux-virtual (6.19.0-3.3) ...
151s Setting up linux-perf (6.19.0-3.3) ...
151s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
152s Processing triggers for debianutils (5.23.2build1) ...
152s Processing triggers for install-info (7.2-5) ...
152s Processing triggers for initramfs-tools (0.150ubuntu7) ...
152s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
157s Processing triggers for libc-bin (2.42-2ubuntu4) ...
157s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
157s /etc/kernel/postinst.d/initramfs-tools:
157s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
161s /etc/kernel/postinst.d/zz-update-grub:
161s Sourcing file `/etc/default/grub'
161s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
161s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
161s Generating grub configuration file ...
161s Found linux image: /boot/vmlinuz-6.19.0-3-generic
161s Found initrd image: /boot/initrd.img-6.19.0-3-generic
161s Found linux image: /boot/vmlinuz-6.18.0-9-generic
161s Found initrd image: /boot/initrd.img-6.18.0-9-generic
161s Warning: os-prober will not be executed to detect other bootable partitions.
161s Systems on them will not be added to the GRUB boot configuration.
161s Check GRUB_DISABLE_OS_PROBER documentation entry.
161s Adding boot menu entry for UEFI Firmware Settings ...
161s done
162s autopkgtest [04:22:11]: upgrading testbed (apt dist-upgrade and autopurge)
162s Reading package lists...
163s Building dependency tree...
163s Reading state information...
163s Calculating upgrade...
163s The following package was automatically installed and is no longer required:
163s   libpython3.13
163s Use 'sudo apt autoremove' to remove it.
163s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
163s Reading package lists...
163s Building dependency tree...
163s Reading state information...
163s Solving dependencies...
163s The following packages will be REMOVED:
163s   libpython3.13*
163s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
163s After this operation, 7599 kB disk space will be freed.
163s (Reading database ... 
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(Reading database ... 125273 files and directories currently installed.)
163s Removing libpython3.13:amd64 (3.13.11-1) ...
163s Processing triggers for libc-bin (2.42-2ubuntu4) ...
164s autopkgtest [04:22:13]: rebooting testbed after setup commands that affected boot
193s autopkgtest [04:22:42]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
196s autopkgtest [04:22:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-tcgabiolinks
197s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (dsc) [2553 B]
197s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (tar) [7628 kB]
197s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (diff) [5196 B]
197s gpgv: Signature made Fri Mar 14 02:39:49 2025 UTC
197s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
197s gpgv:                issuer "plessy@debian.org"
197s gpgv: Can't check signature: No public key
197s dpkg-source: warning: cannot verify inline signature for ./r-bioc-tcgabiolinks_2.34.1+dfsg-1.dsc: no acceptable signature found
198s autopkgtest [04:22:47]: testing package r-bioc-tcgabiolinks version 2.34.1+dfsg-1
198s autopkgtest [04:22:47]: build not needed
201s autopkgtest [04:22:50]: test pkg-r-autopkgtest: preparing testbed
201s Reading package lists...
201s Building dependency tree...
201s Reading state information...
201s Solving dependencies...
202s The following NEW packages will be installed:
202s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
202s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
202s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
202s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
202s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
202s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
202s   javascript-common libamd3 libasan8 libbibtex-parser-perl libblas-dev
202s   libblas3 libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev
202s   libcairo2 libcc1-0 libcolamd3 libcrypt-dev libdatrie1 libdeflate-dev
202s   libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5
202s   libgit2-1.9 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0
202s   libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
202s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
202s   libjs-bootstrap4 libjs-bootswatch libjs-d3 libjs-es5-shim libjs-highlight.js
202s   libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions
202s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
202s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
202s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
202s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
202s   liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev
202s   libnlopt0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
202s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
202s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
202s   libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev
202s   libsuitesparseconfig7 libsynctex2 libtcl8.6 libteckit0 libtexlua53-5
202s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1
202s   libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4
202s   libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 linux-libc-dev
202s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
202s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-affy
202s   r-bioc-affyio r-bioc-all r-bioc-annotate r-bioc-annotationdbi
202s   r-bioc-annotationhub r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache
202s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle
202s   r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-complexheatmap
202s   r-bioc-consensusclusterplus r-bioc-delayedarray r-bioc-edaseq r-bioc-edger
202s   r-bioc-experimenthub r-bioc-genefilter r-bioc-genomeinfodb
202s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
202s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma
202s   r-bioc-matrixgenerics r-bioc-preprocesscore r-bioc-pwalign r-bioc-rhtslib
202s   r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
202s   r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-sva
202s   r-bioc-tcgabiolinks r-bioc-tcgabiolinksgui.data r-bioc-ucsc.utils
202s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-backports
202s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64
202s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-boot r-cran-brew
202s   r-cran-brio r-cran-broom r-cran-bslib r-cran-cachem r-cran-callr r-cran-car
202s   r-cran-cardata r-cran-caret r-cran-catools r-cran-circlize r-cran-class
202s   r-cran-cli r-cran-clipr r-cran-clock r-cran-clue r-cran-cluster
202s   r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark
202s   r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon
202s   r-cran-credentials r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi
202s   r-cran-dbplyr r-cran-deldir r-cran-deriv r-cran-desc r-cran-devtools
202s   r-cran-diagram r-cran-diffobj r-cran-digest r-cran-doby r-cran-doparallel
202s   r-cran-dotcall64 r-cran-downlit r-cran-downloader r-cran-dplyr r-cran-dqrng
202s   r-cran-dt r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-exactranktests
202s   r-cran-fansi r-cran-farver r-cran-fastdummies r-cran-fastmap r-cran-filelock
202s   r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome r-cran-foreach
202s   r-cran-forecast r-cran-formatr r-cran-formula r-cran-fracdiff r-cran-fs
202s   r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply
202s   r-cran-gdata r-cran-generics r-cran-gert r-cran-getoptlong r-cran-ggplot2
202s   r-cran-ggpubr r-cran-ggrepel r-cran-ggridges r-cran-ggsci r-cran-ggsignif
202s   r-cran-ggtext r-cran-gh r-cran-gitcreds r-cran-globaloptions r-cran-globals
202s   r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gridextra
202s   r-cran-gridtext r-cran-gtable r-cran-gtools r-cran-hardhat r-cran-here
202s   r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
202s   r-cran-httr r-cran-httr2 r-cran-hwriter r-cran-ica r-cran-igraph r-cran-ini
202s   r-cran-interp r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators
202s   r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-km.ci
202s   r-cran-kmsurv r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later
202s   r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval
202s   r-cran-leidenbase r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4
202s   r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-markdown
202s   r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats
202s   r-cran-maxstat r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime
202s   r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-mvtnorm
202s   r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl
202s   r-cran-parallelly r-cran-parmigene r-cran-patchwork r-cran-pbapply
202s   r-cran-pbkrtest r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
202s   r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly
202s   r-cran-plyr r-cran-png r-cran-polyclip r-cran-polynom r-cran-praise
202s   r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim r-cran-profvis
202s   r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps
202s   r-cran-purrr r-cran-quadprog r-cran-quantmod r-cran-quantreg
202s   r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-ragg
202s   r-cran-rann r-cran-rappdirs r-cran-rbibutils r-cran-rcmdcheck
202s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo
202s   r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml
202s   r-cran-rcurl r-cran-rdpack r-cran-readr r-cran-recipes r-cran-reformulas
202s   r-cran-remotes r-cran-reshape2 r-cran-restfulr r-cran-reticulate
202s   r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rocr r-cran-roxygen2
202s   r-cran-rpart r-cran-rprojroot r-cran-rspectra r-cran-rsqlite r-cran-rstatix
202s   r-cran-rstudioapi r-cran-rtsne r-cran-rversions r-cran-rvest r-cran-s7
202s   r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform
202s   r-cran-selectr r-cran-sessioninfo r-cran-seurat r-cran-seuratobject
202s   r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-snow
202s   r-cran-sourcetools r-cran-sp r-cran-spam r-cran-sparsem r-cran-sparsevctrs
202s   r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom
202s   r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar
202s   r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi
202s   r-cran-stringr r-cran-survival r-cran-survminer r-cran-survmisc r-cran-sys
202s   r-cran-systemfonts r-cran-tensor r-cran-testthat r-cran-textshaping
202s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange
202s   r-cran-timedate r-cran-tinytex r-cran-tseries r-cran-ttr r-cran-tzdb
202s   r-cran-urca r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uwot
202s   r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker
202s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable
202s   r-cran-xts r-cran-yaml r-cran-zip r-cran-zoo rpcsvc-proto t1utils tex-common
202s   texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip
202s   x11-common xdg-utils zip zlib1g-dev
202s 0 upgraded, 518 newly installed, 0 to remove and 0 not upgraded.
202s Need to get 679 MB of archives.
202s After this operation, 1778 MB of additional disk space will be used.
202s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
202s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
202s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
202s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
202s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
202s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
202s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
202s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
202s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
202s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
202s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
202s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
202s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
202s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
202s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
203s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
203s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
203s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
203s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
203s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
203s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
203s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
203s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
203s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
203s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
204s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
204s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
204s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
204s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
204s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
204s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
204s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
204s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
204s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
204s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
204s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
204s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
204s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
204s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
204s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB]
204s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
204s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
204s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
204s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
205s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
205s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
205s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
205s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
205s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
205s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB]
205s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB]
205s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
205s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB]
205s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB]
205s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
205s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
205s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
205s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
205s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
205s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
205s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
205s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
205s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
205s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
205s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB]
205s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
205s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
205s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
205s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libgit2-1.9 amd64 1.9.1+ds-1ubuntu1 [587 kB]
205s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB]
205s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB]
205s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
205s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
205s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
205s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
205s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
206s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
206s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
206s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
206s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
206s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
206s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
206s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
206s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
206s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
206s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
206s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
206s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
206s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
206s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5build1 [682 kB]
206s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
206s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
206s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
206s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
206s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
206s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
206s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
206s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB]
206s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
206s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
206s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
206s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
206s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB]
206s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
206s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
206s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
206s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
206s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
206s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
206s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
206s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
206s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
206s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
206s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
206s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
206s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
206s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
206s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
206s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB]
206s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB]
206s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
206s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
206s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
206s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB]
206s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
206s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB]
206s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB]
206s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
206s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
206s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
206s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
206s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
206s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
206s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
206s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB]
206s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB]
206s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB]
206s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB]
206s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
206s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB]
206s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
206s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
206s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
206s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
206s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
207s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
207s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
207s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
207s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
208s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
208s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
208s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
208s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
208s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
208s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
208s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
208s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
208s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
208s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-affyio amd64 1.76.0-2 [97.6 kB]
208s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
208s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-preprocesscore amd64 1.68.0+ds-2 [174 kB]
208s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-affy amd64 1.84.0-2 [2021 kB]
208s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-all all 1.48.0-2 [11.5 MB]
208s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
208s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
208s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
208s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
208s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB]
208s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
208s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
208s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
208s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
208s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
208s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB]
208s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
208s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
208s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
208s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
208s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB]
208s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
208s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
209s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
209s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
209s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
209s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
209s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
209s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
209s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
209s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
209s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
209s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
209s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
209s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
209s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
209s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
209s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
209s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
209s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
209s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB]
210s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
210s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB]
210s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
210s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
210s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
210s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
210s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
210s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
210s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
210s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
210s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
210s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB]
210s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
210s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
210s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
210s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB]
210s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB]
210s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
210s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
210s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
210s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
210s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB]
210s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB]
210s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r.oo all 1.27.1-1 [978 kB]
210s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB]
210s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
210s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-aroma.light all 3.36.0-2 [583 kB]
210s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
210s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
210s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
210s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
210s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
210s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
210s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
210s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
210s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
210s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
210s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
210s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
210s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
210s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
210s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
210s Get:242 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
210s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
210s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
210s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
210s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
211s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
211s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
211s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
211s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
211s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
211s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
211s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
211s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
211s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
211s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
211s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
211s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
211s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
211s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
211s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
211s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
211s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB]
211s Get:264 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB]
211s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB]
211s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB]
211s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB]
212s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB]
213s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
213s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB]
213s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
213s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
213s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB]
213s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB]
213s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB]
213s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globaloptions all 0.1.3-1 [449 kB]
213s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB]
213s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB]
213s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-circlize all 0.4.17+dfsg-1 [3288 kB]
213s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB]
213s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-getoptlong all 1.1.0+dfsg-1 [419 kB]
213s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB]
213s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB]
213s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
213s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-iterators all 1.0.14-1build1 [336 kB]
213s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreach all 1.5.2-1build1 [124 kB]
213s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-doparallel all 1.0.17-1build1 [189 kB]
214s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-complexheatmap all 2.22.0+dfsg-2 [2973 kB]
214s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-consensusclusterplus all 1.70.0-2 [447 kB]
214s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
214s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
214s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
214s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
214s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
214s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB]
214s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
214s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
214s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
215s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB]
215s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB]
215s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
215s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB]
215s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-pwalign amd64 1.2.0-3 [757 kB]
215s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
215s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB]
215s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
215s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB]
215s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB]
215s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
215s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-latticeextra all 0.6-31-1 [2177 kB]
215s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-shortread amd64 1.64.0-3 [5247 kB]
215s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB]
215s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB]
215s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rtracklayer amd64 1.66.0-3 [5225 kB]
215s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
215s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-edaseq all 2.40.0+dfsg-2 [389 kB]
215s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
215s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB]
215s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB]
216s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB]
216s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB]
216s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB]
216s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB]
216s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
216s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB]
216s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sva amd64 3.54.0-2 [466 kB]
216s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-downloader all 0.4-4build2 [24.9 kB]
216s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB]
216s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
216s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
216s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
216s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
216s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
216s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
216s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
216s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
216s Get:337 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
217s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-selectr all 0.5-1-1 [506 kB]
217s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rvest all 1.0.5-1 [301 kB]
217s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-tcgabiolinksgui.data all 1.26.0+dfsg-2 [22.5 MB]
217s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clipr all 0.8.0-1build1 [54.0 kB]
217s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tzdb amd64 0.5.0-1 [538 kB]
217s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vroom amd64 1.7.0-1 [910 kB]
217s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-readr amd64 2.1.6-1 [818 kB]
218s Get:345 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-tcgabiolinks all 2.34.1+dfsg-1 [6291 kB]
218s Get:346 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
218s Get:347 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-boot all 1.3-32-1 [636 kB]
218s Get:348 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB]
218s Get:349 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
218s Get:350 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-broom all 1.0.12+dfsg-1 [1708 kB]
218s Get:351 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
218s Get:352 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
218s Get:353 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
218s Get:354 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cardata all 3.0.6-1 [1687 kB]
218s Get:355 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
218s Get:356 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB]
218s Get:357 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-minqa amd64 1.2.8-1 [119 kB]
218s Get:358 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnlopt0 amd64 2.7.1-7ubuntu1 [189 kB]
218s Get:359 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nloptr amd64 2.2.1-2 [251 kB]
218s Get:360 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB]
218s Get:361 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB]
218s Get:362 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reformulas all 0.4.4-1 [151 kB]
218s Get:363 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lme4 amd64 1.1-38-1 [4197 kB]
218s Get:364 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-numderiv all 2016.8-1.1-3build1 [116 kB]
218s Get:365 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB]
218s Get:366 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deriv all 4.2.0-1 [154 kB]
218s Get:367 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fracdiff amd64 1.5-3-1 [108 kB]
218s Get:368 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB]
218s Get:369 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB]
218s Get:370 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-timedate amd64 4052.112-1 [1298 kB]
218s Get:371 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-quadprog amd64 1.5-8-1build2 [32.6 kB]
218s Get:372 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB]
218s Get:373 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ttr amd64 0.24.4-1 [511 kB]
218s Get:374 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-quantmod all 0.4.28-1 [1037 kB]
218s Get:375 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tseries amd64 0.10-59-3 [382 kB]
218s Get:376 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-urca amd64 1.3-4-1build1 [1052 kB]
218s Get:377 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
218s Get:378 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-forecast amd64 8.23.0-1 [1569 kB]
218s Get:379 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-modelr all 0.1.11-1 [195 kB]
218s Get:380 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-microbenchmark amd64 1.5.0-1 [67.4 kB]
218s Get:381 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-doby all 4.7.1-3 [4741 kB]
219s Get:382 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbkrtest all 0.5.5-1 [217 kB]
219s Get:383 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB]
219s Get:384 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixmodels all 0.5-4-1 [351 kB]
219s Get:385 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB]
219s Get:386 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB]
219s Get:387 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB]
219s Get:388 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build2 [155 kB]
219s Get:389 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB]
219s Get:390 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clock amd64 0.7.2-1 [1903 kB]
219s Get:391 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gower amd64 1.0.2-1 [210 kB]
219s Get:392 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sparsevctrs amd64 0.2.0-2 [170 kB]
219s Get:393 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hardhat all 1.4.2+dfsg-1 [596 kB]
219s Get:394 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB]
219s Get:395 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB]
219s Get:396 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
219s Get:397 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.19.0-1 [160 kB]
219s Get:398 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB]
219s Get:399 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB]
219s Get:400 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB]
219s Get:401 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB]
219s Get:402 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progressr all 0.15.1-1 [353 kB]
219s Get:403 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-squarem all 2021.1-1build1 [180 kB]
219s Get:404 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lava all 1.8.2+dfsg-1 [2210 kB]
219s Get:405 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB]
219s Get:406 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB]
219s Get:407 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-timechange amd64 0.3.0-2 [201 kB]
219s Get:408 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lubridate amd64 1.9.4+dfsg-1 [1009 kB]
219s Get:409 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB]
219s Get:410 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
219s Get:411 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-caret amd64 7.0-1+dfsg-1 [3460 kB]
219s Get:412 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB]
219s Get:413 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-quantreg amd64 6.1-1 [1455 kB]
219s Get:414 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-car all 3.1-5-1 [1526 kB]
219s Get:415 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB]
219s Get:416 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
219s Get:417 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-miniui all 0.1.2-1 [37.3 kB]
219s Get:418 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shinyjs all 2.1.0-1build1 [967 kB]
219s Get:419 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB]
220s Get:420 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-corrplot all 0.95-1 [134 kB]
220s Get:421 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-credentials all 2.0.3-1 [208 kB]
220s Get:422 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB]
220s Get:423 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crosstalk all 1.2.2+dfsg-1 [181 kB]
220s Get:424 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
220s Get:425 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rstudioapi all 0.18.0-1 [326 kB]
220s Get:426 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zip amd64 2.3.3-1 [146 kB]
220s Get:427 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gert amd64 2.1.4+dfsg-1build1 [241 kB]
220s Get:428 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gitcreds all 0.1.2-1 [93.5 kB]
220s Get:429 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ini all 0.3.1-2build2 [16.5 kB]
220s Get:430 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gh all 1.5.0-2 [130 kB]
220s Get:431 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
220s Get:432 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-whisker all 0.4.1-1 [62.7 kB]
220s Get:433 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-usethis all 3.2.1-1 [952 kB]
220s Get:434 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ellipsis amd64 0.3.2-2build1 [36.0 kB]
220s Get:435 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
220s Get:436 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-downlit all 0.4.5-1 [126 kB]
220s Get:437 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB]
220s Get:438 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB]
220s Get:439 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB]
220s Get:440 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootswatch all 3.3.7+dfsg2-2 [133 kB]
220s Get:441 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgdown all 2.1.1-2 [1341 kB]
220s Get:442 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
220s Get:443 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-profvis amd64 0.4.0+dfsg-1 [206 kB]
220s Get:444 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sessioninfo all 1.2.3-1 [280 kB]
220s Get:445 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xopen all 1.0.1+dfsg-1 [21.7 kB]
220s Get:446 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcmdcheck all 1.4.0-4 [209 kB]
220s Get:447 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-remotes all 2.5.0+dfsg-1 [447 kB]
220s Get:448 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-roxygen2 amd64 7.3.2-1 [723 kB]
220s Get:449 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rversions all 3.0.0-1 [163 kB]
220s Get:450 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
220s Get:451 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
220s Get:452 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
220s Get:453 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
220s Get:454 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-urlchecker all 1.0.1-2 [34.0 kB]
220s Get:455 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-devtools all 2.4.5-1 [676 kB]
220s Get:456 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dotcall64 amd64 1.2-1 [36.8 kB]
220s Get:457 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sitmo amd64 2.0.2-1build1 [133 kB]
220s Get:458 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB]
220s Get:459 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dt all 0.34.0+dfsg-1 [245 kB]
220s Get:460 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-exactranktests amd64 0.8-35-1 [163 kB]
220s Get:461 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastdummies all 1.7.5-1 [51.1 kB]
220s Get:462 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fitdistrplus all 1.2-6-1 [2764 kB]
220s Get:463 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB]
220s Get:464 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtools amd64 3.9.5-1build1 [345 kB]
220s Get:465 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gdata all 3.0.1-1build1 [491 kB]
220s Get:466 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggrepel amd64 0.9.6-1 [270 kB]
220s Get:467 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggsci all 4.2.0-1 [1954 kB]
220s Get:468 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggsignif all 0.6.4-1 [398 kB]
220s Get:469 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB]
220s Get:470 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polynom all 1.4-1+dfsg-1 [89.7 kB]
220s Get:471 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rstatix all 0.7.3-1 [616 kB]
220s Get:472 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggpubr all 0.6.0-1 [2042 kB]
221s Get:473 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggridges all 0.5.7-1 [2214 kB]
221s Get:474 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-markdown all 1.13-1 [162 kB]
221s Get:475 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridtext amd64 0.1.5-2 [456 kB]
221s Get:476 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggtext all 0.1.2-1 [1069 kB]
221s Get:477 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB]
221s Get:478 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gplots all 3.3.0-1 [3825 kB]
221s Get:479 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-here all 1.0.2-1 [51.5 kB]
221s Get:480 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB]
221s Get:481 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-igraph amd64 2.1.4-1build1 [5218 kB]
221s Get:482 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB]
221s Get:483 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-km.ci all 0.5-6-1 [67.1 kB]
221s Get:484 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kmsurv amd64 0.1-5-2build2 [126 kB]
221s Get:485 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-leidenbase amd64 0.1.32-1 [2512 kB]
221s Get:486 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mvtnorm amd64 1.3-3-1build1 [921 kB]
221s Get:487 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxstat amd64 0.7-25-2build2 [180 kB]
221s Get:488 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parmigene amd64 1.1.1-1 [58.2 kB]
221s Get:489 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB]
221s Get:490 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB]
221s Get:491 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plotly all 4.10.4+dfsg-4 [3635 kB]
221s Get:492 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB]
221s Get:493 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB]
221s Get:494 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB]
221s Get:495 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpphnsw amd64 0.6.0+ds-1 [185 kB]
221s Get:496 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppprogress all 0.4.2-2build2 [23.0 kB]
221s Get:497 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-1 [118 kB]
221s Get:498 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reticulate amd64 1.41.0.1+dfsg-1 [1306 kB]
221s Get:499 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rocr all 1.0-12-1 [465 kB]
221s Get:500 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB]
221s Get:501 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB]
221s Get:502 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB]
221s Get:503 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB]
221s Get:504 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
221s Get:505 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spam amd64 2.11-1-1 [2756 kB]
222s Get:506 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB]
222s Get:507 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB]
222s Get:508 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB]
222s Get:509 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB]
222s Get:510 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB]
222s Get:511 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB]
222s Get:512 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB]
222s Get:513 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB]
222s Get:514 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB]
222s Get:515 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-uwot amd64 0.2.3-1 [1080 kB]
222s Get:516 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-seurat amd64 5.2.1-5 [3293 kB]
222s Get:517 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survmisc all 0.5.6-1 [334 kB]
222s Get:518 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survminer all 0.5.0+dfsg-2 [401 kB]
222s Preconfiguring packages ...
223s Fetched 679 MB in 20s (33.3 MB/s)
223s Selecting previously unselected package libc-dev-bin.
223s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 125269 files and directories currently installed.)
223s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
223s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
223s Selecting previously unselected package linux-libc-dev:amd64.
223s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
223s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
223s Selecting previously unselected package libcrypt-dev:amd64.
223s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
223s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
223s Selecting previously unselected package rpcsvc-proto.
223s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
223s Unpacking rpcsvc-proto (1.4.3-1build1) ...
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224s Selecting previously unselected package libgfortran5:amd64.
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230s Selecting previously unselected package r-cran-dplyr.
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230s Unpacking r-cran-dplyr (1.1.4-4) ...
230s Selecting previously unselected package r-cran-purrr.
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230s Selecting previously unselected package r-cran-stringi.
230s Preparing to unpack .../211-r-cran-stringi_1.8.4-1build2_amd64.deb ...
230s Unpacking r-cran-stringi (1.8.4-1build2) ...
230s Selecting previously unselected package r-cran-stringr.
230s Preparing to unpack .../212-r-cran-stringr_1.5.1-1_all.deb ...
230s Unpacking r-cran-stringr (1.5.1-1) ...
230s Selecting previously unselected package r-cran-tidyr.
230s Preparing to unpack .../213-r-cran-tidyr_1.3.1-1_amd64.deb ...
230s Unpacking r-cran-tidyr (1.3.1-1) ...
230s Selecting previously unselected package r-cran-dbplyr.
230s Preparing to unpack .../214-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ...
230s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ...
230s Selecting previously unselected package r-cran-filelock.
230s Preparing to unpack .../215-r-cran-filelock_1.0.3-1_amd64.deb ...
230s Unpacking r-cran-filelock (1.0.3-1) ...
230s Selecting previously unselected package r-bioc-biocfilecache.
230s Preparing to unpack .../216-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
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230s Selecting previously unselected package r-bioc-biocversion.
230s Preparing to unpack .../217-r-bioc-biocversion_3.20.0-2_all.deb ...
230s Unpacking r-bioc-biocversion (3.20.0-2) ...
230s Selecting previously unselected package r-cran-rappdirs.
230s Preparing to unpack .../218-r-cran-rappdirs_0.3.3-1build1_amd64.deb ...
230s Unpacking r-cran-rappdirs (0.3.3-1build1) ...
230s Selecting previously unselected package r-cran-yaml.
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230s Selecting previously unselected package r-bioc-annotationhub.
230s Preparing to unpack .../220-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ...
230s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ...
230s Selecting previously unselected package r-cran-r.methodss3.
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230s Selecting previously unselected package r-cran-r.oo.
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230s Selecting previously unselected package r-cran-r.utils.
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230s Selecting previously unselected package r-cran-matrixstats.
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230s Selecting previously unselected package r-bioc-aroma.light.
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230s Selecting previously unselected package r-bioc-biocio.
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230s Selecting previously unselected package r-cran-formatr.
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230s Selecting previously unselected package r-cran-lambda.r.
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230s Selecting previously unselected package r-cran-futile.options.
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230s Selecting previously unselected package r-cran-futile.logger.
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230s Selecting previously unselected package r-cran-snow.
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230s Selecting previously unselected package r-cran-codetools.
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230s Selecting previously unselected package r-cran-bh.
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230s Selecting previously unselected package r-bioc-biocparallel.
230s Preparing to unpack .../234-r-bioc-biocparallel_1.40.0-2_amd64.deb ...
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230s Selecting previously unselected package r-cran-base64enc.
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230s Selecting previously unselected package r-cran-digest.
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230s Selecting previously unselected package r-cran-htmltools.
230s Preparing to unpack .../237-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
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230s Selecting previously unselected package r-cran-evaluate.
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230s Selecting previously unselected package r-cran-xfun.
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230s Selecting previously unselected package r-cran-highr.
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230s Selecting previously unselected package libjs-mathjax.
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230s Selecting previously unselected package r-cran-knitr.
230s Preparing to unpack .../242-r-cran-knitr_1.51+dfsg-1_all.deb ...
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230s Selecting previously unselected package r-cran-jquerylib.
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230s Selecting previously unselected package r-cran-fs.
230s Preparing to unpack .../244-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
230s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
231s Selecting previously unselected package r-cran-sass.
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231s Selecting previously unselected package r-cran-bslib.
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231s Selecting previously unselected package r-cran-fontawesome.
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231s Selecting previously unselected package r-cran-tinytex.
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231s Selecting previously unselected package libjs-modernizr.
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231s Selecting previously unselected package r-cran-littler.
231s Preparing to unpack .../250-r-cran-littler_0.3.22-1_amd64.deb ...
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231s Selecting previously unselected package r-cran-pkgkitten.
231s Preparing to unpack .../251-r-cran-pkgkitten_0.2.4-1_all.deb ...
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231s Selecting previously unselected package r-cran-rcpp.
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231s Selecting previously unselected package r-cran-later.
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231s Selecting previously unselected package r-cran-promises.
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231s Selecting previously unselected package r-cran-httpuv.
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231s Selecting previously unselected package r-cran-sourcetools.
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231s Selecting previously unselected package r-cran-commonmark.
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231s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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231s Selecting previously unselected package r-cran-shiny.
231s Preparing to unpack .../259-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
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231s Selecting previously unselected package r-cran-rmarkdown.
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231s Selecting previously unselected package r-cran-bookdown.
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231s Selecting previously unselected package tex-common.
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233s Selecting previously unselected package r-bioc-biocstyle.
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233s Selecting previously unselected package r-cran-hms.
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233s Selecting previously unselected package r-cran-prettyunits.
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233s Selecting previously unselected package r-cran-progress.
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233s Selecting previously unselected package r-cran-httr2.
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233s Selecting previously unselected package r-cran-xml2.
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233s Selecting previously unselected package r-bioc-biomart.
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233s Selecting previously unselected package r-cran-globaloptions.
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233s Selecting previously unselected package r-cran-shape.
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233s Selecting previously unselected package r-cran-colorspace.
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233s Selecting previously unselected package r-cran-getoptlong.
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233s Selecting previously unselected package r-cran-iterators.
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234s Selecting previously unselected package r-bioc-complexheatmap.
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234s Selecting previously unselected package r-bioc-consensusclusterplus.
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234s Selecting previously unselected package r-cran-lattice.
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234s Selecting previously unselected package r-bioc-matrixgenerics.
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234s Selecting previously unselected package r-cran-abind.
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234s Selecting previously unselected package r-bioc-s4arrays.
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234s Selecting previously unselected package r-bioc-sparsearray.
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234s Selecting previously unselected package r-bioc-delayedarray.
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234s Selecting previously unselected package r-bioc-genomicranges.
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234s Selecting previously unselected package r-cran-bitops.
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234s Selecting previously unselected package r-bioc-rhtslib.
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234s Selecting previously unselected package r-bioc-rsamtools.
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234s Selecting previously unselected package r-bioc-genomicalignments.
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234s Selecting previously unselected package r-bioc-pwalign.
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234s Selecting previously unselected package r-cran-hwriter.
234s Preparing to unpack .../303-r-cran-hwriter_1.3.2.1-1_all.deb ...
234s Unpacking r-cran-hwriter (1.3.2.1-1) ...
234s Selecting previously unselected package r-cran-jpeg.
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234s Selecting previously unselected package r-cran-deldir.
234s Preparing to unpack .../305-r-cran-deldir_2.0-4-1build1_amd64.deb ...
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234s Selecting previously unselected package r-cran-rcppeigen.
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234s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
234s Selecting previously unselected package r-cran-interp.
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234s Selecting previously unselected package r-cran-mass.
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234s Selecting previously unselected package r-cran-latticeextra.
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234s Selecting previously unselected package r-bioc-shortread.
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234s Selecting previously unselected package r-cran-rcurl.
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234s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
234s Selecting previously unselected package r-cran-restfulr.
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234s Selecting previously unselected package r-bioc-rtracklayer.
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234s Selecting previously unselected package r-bioc-genomicfeatures.
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234s Selecting previously unselected package r-bioc-edaseq.
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234s Selecting previously unselected package r-cran-statmod.
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234s Selecting previously unselected package r-bioc-limma.
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234s Selecting previously unselected package r-cran-locfit.
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234s Selecting previously unselected package r-bioc-experimenthub.
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235s Selecting previously unselected package r-cran-survival.
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235s Selecting previously unselected package r-bioc-genefilter.
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235s Selecting previously unselected package r-cran-nlme.
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235s Selecting previously unselected package r-cran-mgcv.
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235s Selecting previously unselected package r-cran-downloader.
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235s Selecting previously unselected package r-cran-data.table.
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235s Selecting previously unselected package r-bioc-tcgabiolinksgui.data.
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235s Selecting previously unselected package r-cran-clipr.
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235s Selecting previously unselected package r-cran-vroom.
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235s Selecting previously unselected package r-bioc-tcgabiolinks.
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235s Selecting previously unselected package r-cran-backports.
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235s Selecting previously unselected package r-cran-brew.
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235s Selecting previously unselected package r-cran-brio.
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235s Selecting previously unselected package r-cran-broom.
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235s Selecting previously unselected package r-cran-ps.
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235s Selecting previously unselected package r-cran-processx.
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235s Selecting previously unselected package r-cran-callr.
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235s Selecting previously unselected package r-cran-cardata.
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235s Selecting previously unselected package r-cran-formula.
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236s Selecting previously unselected package r-cran-nnet.
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236s Selecting previously unselected package r-cran-minqa.
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236s Selecting previously unselected package libnlopt0:amd64.
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236s Selecting previously unselected package r-cran-nloptr.
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236s Selecting previously unselected package r-cran-rbibutils.
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236s Selecting previously unselected package r-cran-rdpack.
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236s Selecting previously unselected package r-cran-lme4.
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236s Selecting previously unselected package r-cran-numderiv.
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236s Selecting previously unselected package r-cran-cowplot.
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236s Selecting previously unselected package r-cran-fracdiff.
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236s Selecting previously unselected package r-cran-zoo.
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236s Selecting previously unselected package r-cran-lmtest.
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236s Selecting previously unselected package r-cran-timedate.
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236s Selecting previously unselected package r-cran-quadprog.
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236s Selecting previously unselected package r-cran-xts.
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236s Selecting previously unselected package r-cran-quantmod.
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236s Selecting previously unselected package r-cran-tseries.
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236s Selecting previously unselected package r-cran-urca.
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236s Selecting previously unselected package r-cran-rcpparmadillo.
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236s Selecting previously unselected package r-cran-modelr.
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236s Selecting previously unselected package r-cran-doby.
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236s Selecting previously unselected package r-cran-matrixmodels.
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236s Selecting previously unselected package r-cran-class.
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236s Selecting previously unselected package r-cran-proxy.
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236s Selecting previously unselected package r-cran-modelmetrics.
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236s Selecting previously unselected package r-cran-proc.
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237s Selecting previously unselected package r-cran-sparsevctrs.
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237s Selecting previously unselected package r-cran-hardhat.
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237s Selecting previously unselected package r-cran-rpart.
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237s Selecting previously unselected package r-cran-diagram.
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237s Selecting previously unselected package r-cran-kernsmooth.
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237s Selecting previously unselected package r-cran-globals.
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237s Selecting previously unselected package r-cran-listenv.
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237s Selecting previously unselected package r-cran-parallelly.
237s Preparing to unpack .../398-r-cran-parallelly_1.42.0-1_amd64.deb ...
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237s Selecting previously unselected package r-cran-future.
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237s Selecting previously unselected package r-cran-future.apply.
237s Preparing to unpack .../400-r-cran-future.apply_1.11.3+dfsg-1_all.deb ...
237s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ...
237s Selecting previously unselected package r-cran-progressr.
237s Preparing to unpack .../401-r-cran-progressr_0.15.1-1_all.deb ...
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237s Selecting previously unselected package r-cran-squarem.
237s Preparing to unpack .../402-r-cran-squarem_2021.1-1build1_all.deb ...
237s Unpacking r-cran-squarem (2021.1-1build1) ...
237s Selecting previously unselected package r-cran-lava.
237s Preparing to unpack .../403-r-cran-lava_1.8.2+dfsg-1_all.deb ...
237s Unpacking r-cran-lava (1.8.2+dfsg-1) ...
237s Selecting previously unselected package r-cran-prodlim.
237s Preparing to unpack .../404-r-cran-prodlim_2024.06.25-1_amd64.deb ...
237s Unpacking r-cran-prodlim (2024.06.25-1) ...
237s Selecting previously unselected package r-cran-ipred.
237s Preparing to unpack .../405-r-cran-ipred_0.9-15-1_amd64.deb ...
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237s Selecting previously unselected package r-cran-timechange.
237s Preparing to unpack .../406-r-cran-timechange_0.3.0-2_amd64.deb ...
237s Unpacking r-cran-timechange (0.3.0-2) ...
237s Selecting previously unselected package r-cran-lubridate.
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237s Selecting previously unselected package r-cran-recipes.
237s Preparing to unpack .../408-r-cran-recipes_1.1.0+dfsg-1_all.deb ...
237s Unpacking r-cran-recipes (1.1.0+dfsg-1) ...
237s Selecting previously unselected package r-cran-reshape2.
237s Preparing to unpack .../409-r-cran-reshape2_1.4.4-2build2_amd64.deb ...
237s Unpacking r-cran-reshape2 (1.4.4-2build2) ...
237s Selecting previously unselected package r-cran-caret.
237s Preparing to unpack .../410-r-cran-caret_7.0-1+dfsg-1_amd64.deb ...
237s Unpacking r-cran-caret (7.0-1+dfsg-1) ...
237s Selecting previously unselected package r-cran-conquer.
237s Preparing to unpack .../411-r-cran-conquer_1.3.3-1_amd64.deb ...
237s Unpacking r-cran-conquer (1.3.3-1) ...
237s Selecting previously unselected package r-cran-quantreg.
237s Preparing to unpack .../412-r-cran-quantreg_6.1-1_amd64.deb ...
237s Unpacking r-cran-quantreg (6.1-1) ...
237s Selecting previously unselected package r-cran-car.
237s Preparing to unpack .../413-r-cran-car_3.1-5-1_all.deb ...
237s Unpacking r-cran-car (3.1-5-1) ...
237s Selecting previously unselected package r-cran-catools.
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237s Selecting previously unselected package r-cran-htmlwidgets.
237s Preparing to unpack .../415-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
237s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
237s Selecting previously unselected package r-cran-miniui.
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237s Unpacking r-cran-miniui (0.1.2-1) ...
237s Selecting previously unselected package r-cran-shinyjs.
237s Preparing to unpack .../417-r-cran-shinyjs_2.1.0-1build1_all.deb ...
237s Unpacking r-cran-shinyjs (2.1.0-1build1) ...
237s Selecting previously unselected package r-cran-colourpicker.
237s Preparing to unpack .../418-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ...
237s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ...
237s Selecting previously unselected package r-cran-corrplot.
237s Preparing to unpack .../419-r-cran-corrplot_0.95-1_all.deb ...
237s Unpacking r-cran-corrplot (0.95-1) ...
237s Selecting previously unselected package r-cran-credentials.
237s Preparing to unpack .../420-r-cran-credentials_2.0.3-1_all.deb ...
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237s Selecting previously unselected package r-cran-lazyeval.
237s Preparing to unpack .../421-r-cran-lazyeval_0.2.2-1build2_amd64.deb ...
237s Unpacking r-cran-lazyeval (0.2.2-1build2) ...
237s Selecting previously unselected package r-cran-crosstalk.
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237s Selecting previously unselected package r-cran-desc.
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237s Selecting previously unselected package r-cran-rstudioapi.
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237s Selecting previously unselected package r-cran-zip.
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237s Selecting previously unselected package r-cran-gert.
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237s Selecting previously unselected package r-cran-gitcreds.
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237s Selecting previously unselected package r-cran-ini.
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237s Selecting previously unselected package r-cran-gh.
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237s Selecting previously unselected package r-cran-rprojroot.
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237s Selecting previously unselected package r-cran-whisker.
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237s Selecting previously unselected package r-cran-usethis.
237s Preparing to unpack .../432-r-cran-usethis_3.2.1-1_all.deb ...
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238s Selecting previously unselected package r-cran-ellipsis.
238s Preparing to unpack .../433-r-cran-ellipsis_0.3.2-2build1_amd64.deb ...
238s Unpacking r-cran-ellipsis (0.3.2-2build1) ...
238s Selecting previously unselected package r-cran-pkgbuild.
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238s Selecting previously unselected package r-cran-systemfonts.
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238s Selecting previously unselected package r-cran-textshaping.
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238s Selecting previously unselected package r-cran-ragg.
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238s Selecting previously unselected package libjs-bootswatch.
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238s Selecting previously unselected package r-cran-pkgdown.
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238s Selecting previously unselected package r-cran-profvis.
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238s Selecting previously unselected package r-cran-xopen.
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238s Selecting previously unselected package r-cran-remotes.
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238s Selecting previously unselected package r-cran-roxygen2.
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238s Selecting previously unselected package r-cran-rversions.
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238s Selecting previously unselected package r-cran-praise.
238s Preparing to unpack .../449-r-cran-praise_1.0.0-4build2_all.deb ...
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238s Selecting previously unselected package r-cran-diffobj.
238s Preparing to unpack .../450-r-cran-diffobj_0.3.5-1build1_amd64.deb ...
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238s Selecting previously unselected package r-cran-waldo.
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238s Selecting previously unselected package r-cran-testthat.
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238s Selecting previously unselected package r-cran-urlchecker.
238s Preparing to unpack .../453-r-cran-urlchecker_1.0.1-2_all.deb ...
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238s Selecting previously unselected package r-cran-devtools.
238s Preparing to unpack .../454-r-cran-devtools_2.4.5-1_all.deb ...
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238s Selecting previously unselected package r-cran-dotcall64.
238s Preparing to unpack .../455-r-cran-dotcall64_1.2-1_amd64.deb ...
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238s Selecting previously unselected package r-cran-sitmo.
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238s Selecting previously unselected package r-cran-dqrng.
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238s Selecting previously unselected package r-cran-dt.
238s Preparing to unpack .../458-r-cran-dt_0.34.0+dfsg-1_all.deb ...
238s Unpacking r-cran-dt (0.34.0+dfsg-1) ...
238s Selecting previously unselected package r-cran-exactranktests.
238s Preparing to unpack .../459-r-cran-exactranktests_0.8-35-1_amd64.deb ...
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238s Selecting previously unselected package r-cran-fastdummies.
238s Preparing to unpack .../460-r-cran-fastdummies_1.7.5-1_all.deb ...
238s Unpacking r-cran-fastdummies (1.7.5-1) ...
238s Selecting previously unselected package r-cran-fitdistrplus.
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238s Selecting previously unselected package r-cran-fnn.
238s Preparing to unpack .../462-r-cran-fnn_1.1.4.1-1_amd64.deb ...
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238s Selecting previously unselected package r-cran-gtools.
238s Preparing to unpack .../463-r-cran-gtools_3.9.5-1build1_amd64.deb ...
238s Unpacking r-cran-gtools (3.9.5-1build1) ...
238s Selecting previously unselected package r-cran-gdata.
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238s Selecting previously unselected package r-cran-ggrepel.
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238s Selecting previously unselected package r-cran-ggsci.
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238s Selecting previously unselected package r-cran-ggsignif.
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238s Selecting previously unselected package r-cran-gridextra.
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238s Selecting previously unselected package r-cran-polynom.
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238s Selecting previously unselected package r-cran-rstatix.
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239s Selecting previously unselected package r-cran-ggpubr.
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239s Selecting previously unselected package r-cran-ggridges.
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239s Selecting previously unselected package r-cran-markdown.
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239s Selecting previously unselected package r-cran-gridtext.
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239s Selecting previously unselected package r-cran-gplots.
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239s Selecting previously unselected package r-cran-maxstat.
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239s Selecting previously unselected package r-cran-plotly.
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239s Selecting previously unselected package r-cran-polyclip.
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239s Selecting previously unselected package r-cran-reticulate.
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240s Setting up libjs-json (0~20221030+~1.0.8-1build1) ...
240s Setting up javascript-common (12+nmu1build1) ...
240s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
240s Setting up libpixman-1-0:amd64 (0.46.4-1) ...
240s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
240s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ...
240s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
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244s Setting up r-cran-sitmo (2.0.2-1build1) ...
244s Setting up r-cran-plyr (1.8.9-1) ...
244s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
244s Setting up r-cran-ini (0.3.1-2build2) ...
244s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
244s Setting up r-cran-isoband (0.2.7-1) ...
244s Setting up r-cran-futile.logger (1.4.3-4build2) ...
244s Setting up r-cran-diagram (1.6.5-2) ...
244s Setting up r-cran-waldo (0.6.2-1) ...
244s Setting up r-cran-scales (1.4.0-1) ...
244s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
244s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
244s Setting up r-cran-downloader (0.4-4build2) ...
244s Setting up r-cran-zoo (1.8-15-1) ...
244s Setting up r-cran-later (1.4.1+dfsg-1) ...
244s Setting up r-cran-matrix (1.7-4-1) ...
244s Setting up r-cran-circlize (0.4.17+dfsg-1) ...
244s Setting up r-cran-spatstat.sparse (3.1-0-1) ...
244s Setting up r-cran-here (1.0.2-1) ...
244s Setting up r-cran-doparallel (1.0.17-1build1) ...
244s Setting up r-cran-htmltools (0.5.8.1-1) ...
244s Setting up r-cran-tinytex (0.58-1) ...
244s Setting up r-cran-irlba (2.3.5.1-4) ...
244s Setting up r-cran-kernsmooth (2.23-26-1build1) ...
244s Setting up r-cran-knitr (1.51+dfsg-1) ...
244s Setting up r-cran-rcpptoml (0.2.3+dfsg-1) ...
244s Setting up r-cran-mgcv (1.9-4-1) ...
244s Setting up g++ (4:15.2.0-4ubuntu1) ...
244s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
244s Setting up r-bioc-tcgabiolinksgui.data (1.26.0+dfsg-2) ...
244s Setting up r-cran-cachem (1.1.0-1) ...
244s Setting up r-cran-lmtest (0.9.40-1build1) ...
244s Setting up r-cran-sass (0.4.9+dfsg-1) ...
244s Setting up build-essential (12.12ubuntu2) ...
244s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ...
244s Setting up r-cran-catools (1.18.3-1) ...
244s Setting up r-cran-rtsne (0.17-1) ...
244s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ...
244s Setting up r-bioc-iranges (2.40.1-3) ...
244s Setting up r-cran-dqrng (0.3.2+dfsg-1) ...
244s Setting up r-cran-tzdb (0.5.0-1) ...
244s Setting up r-cran-reticulate (1.41.0.1+dfsg-1) ...
244s Setting up r-cran-globals (0.19.0-1) ...
244s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
244s Setting up r-cran-sessioninfo (1.2.3-1) ...
244s Setting up r-cran-spam (2.11-1-1) ...
244s Setting up r-cran-restfulr (0.0.15-1) ...
244s Setting up r-cran-gdata (3.0.1-1build1) ...
244s Setting up r-cran-vctrs (0.6.5-1) ...
244s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
244s Setting up r-cran-pillar (1.11.1+dfsg-1) ...
244s Setting up r-cran-ellipsis (0.3.2-2build1) ...
244s Setting up r-cran-rcppannoy (0.0.22-1) ...
244s Setting up r-cran-minqa (1.2.8-1) ...
244s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
244s Setting up r-bioc-affyio (1.76.0-2) ...
244s Setting up r-base-dev (4.5.2-1ubuntu2) ...
244s Setting up r-bioc-all (1.48.0-2) ...
244s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
244s Setting up r-cran-stringr (1.5.1-1) ...
244s Setting up r-cran-class (7.3-23-1) ...
244s Setting up r-bioc-biocparallel (1.40.0-2) ...
244s Setting up r-cran-modelmetrics (1.2.2.2-1build2) ...
244s Setting up r-cran-callr (3.7.6-1) ...
244s Setting up r-cran-selectr (0.5-1-1) ...
244s Setting up r-bioc-edger (4.4.2+dfsg-1) ...
244s Setting up r-cran-maxstat (0.7-25-2build2) ...
244s Setting up r-cran-matrixmodels (0.5-4-1) ...
244s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
244s Setting up r-cran-ggsignif (0.6.4-1) ...
244s Setting up r-cran-scattermore (1.2-1) ...
244s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
244s Setting up r-cran-desc (1.4.3-1) ...
244s Setting up r-cran-xml2 (1.4.1-1) ...
244s Setting up r-cran-sparsevctrs (0.2.0-2) ...
244s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
244s Setting up r-cran-clock (0.7.2-1) ...
244s Setting up r-cran-proc (1.18.5-1) ...
244s Setting up r-cran-fontawesome (0.5.3-1) ...
244s Setting up r-cran-survival (3.8-6-1) ...
244s Setting up r-cran-igraph (2.1.4-1build1) ...
244s Setting up r-cran-ggsci (4.2.0-1) ...
244s Setting up r-cran-xts (0.14.1-1) ...
244s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
244s Setting up r-cran-r.oo (1.27.1-1) ...
244s Setting up r-cran-rdpack (2.6.3-1) ...
244s Setting up r-cran-future (1.34.0+dfsg-1) ...
244s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
244s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
244s Setting up r-cran-leidenbase (0.1.32-1) ...
244s Setting up texlive-bibtex-extra (2025.20260124-1) ...
244s Setting up r-cran-reshape2 (1.4.4-2build2) ...
244s Setting up r-cran-interp (1.1-6-1) ...
244s Setting up r-bioc-consensusclusterplus (1.70.0-2) ...
244s Setting up r-cran-httr2 (1.1.1-2) ...
244s Setting up r-cran-future.apply (1.11.3+dfsg-1) ...
244s Setting up r-cran-systemfonts (1.2.1-1) ...
244s Setting up r-cran-km.ci (0.5-6-1) ...
244s Setting up r-cran-timechange (0.3.0-2) ...
244s Setting up r-cran-httr (1.4.7+dfsg-1) ...
244s Setting up r-bioc-affy (1.84.0-2) ...
244s Setting up r-cran-gridextra (2.3-3build2) ...
244s Setting up r-cran-hms (1.1.4-1) ...
244s Setting up r-cran-memoise (2.0.1-1build1) ...
244s Setting up r-cran-lava (1.8.2+dfsg-1) ...
244s Setting up r-cran-promises (1.3.2+dfsg-1) ...
244s Setting up r-cran-purrr (1.0.4-1) ...
244s Setting up r-cran-e1071 (1.7-17-1) ...
244s Setting up r-cran-ggrepel (0.9.6-1) ...
244s Setting up r-cran-spatstat.data (3.1-6-1) ...
244s Setting up r-cran-fastdummies (1.7.5-1) ...
244s Setting up r-cran-credentials (2.0.3-1) ...
244s Setting up r-cran-gridtext (0.1.5-2) ...
244s Setting up r-cran-blob (1.3.0-1) ...
244s Setting up r-bioc-complexheatmap (2.22.0+dfsg-2) ...
244s Setting up r-cran-urlchecker (1.0.1-2) ...
244s Setting up pkg-r-autopkgtest (20250812) ...
244s Setting up r-cran-seuratobject (5.0.2-1) ...
244s Setting up r-cran-spatstat.geom (3.3-6-1) ...
244s Setting up r-bioc-xvector (0.46.0-2) ...
244s Setting up r-cran-pkgbuild (1.4.8-1) ...
244s Setting up r-cran-hardhat (1.4.2+dfsg-1) ...
244s Setting up r-cran-dplyr (1.1.4-4) ...
244s Setting up r-cran-rspectra (0.16-2-1) ...
244s Setting up r-cran-reformulas (0.4.4-1) ...
244s Setting up r-cran-gplots (3.3.0-1) ...
244s Setting up r-cran-ggridges (0.5.7-1) ...
244s Setting up r-cran-rsqlite (2.3.9-1) ...
244s Setting up r-cran-uwot (0.2.3-1) ...
244s Setting up r-cran-gh (1.5.0-2) ...
244s Setting up r-cran-progress (1.2.3-1) ...
244s Setting up r-cran-ttr (0.24.4-1) ...
244s Setting up r-cran-cowplot (1.1.3+dfsg-1) ...
244s Setting up r-cran-sctransform (0.4.1-1) ...
244s Setting up r-cran-lubridate (1.9.4+dfsg-1) ...
244s Setting up r-cran-pkgload (1.4.1-1) ...
244s Setting up r-cran-r.utils (2.13.0-1) ...
244s Setting up r-cran-patchwork (1.3.0-1) ...
244s Setting up r-cran-rocr (1.0-12-1) ...
244s Setting up r-cran-vroom (1.7.0-1) ...
244s Setting up r-cran-prodlim (2024.06.25-1) ...
244s Setting up r-cran-fitdistrplus (1.2-6-1) ...
244s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
244s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
244s Setting up r-cran-ggtext (0.1.2-1) ...
244s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
244s Setting up r-cran-survmisc (0.5.6-1) ...
244s Setting up r-cran-rpart (4.1.24-1build1) ...
244s Setting up r-cran-spatstat.random (3.3-3-1) ...
244s Setting up r-cran-gert (2.1.4+dfsg-1build1) ...
244s Setting up r-cran-latticeextra (0.6-31-1) ...
244s Setting up r-cran-downlit (0.4.5-1) ...
244s Setting up r-cran-textshaping (0.3.7-2) ...
244s Setting up r-cran-ipred (0.9-15-1) ...
244s Setting up r-cran-lme4 (1.1-38-1) ...
244s Setting up r-cran-rvest (1.0.5-1) ...
244s Setting up r-cran-testthat (3.2.3-1) ...
244s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
244s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
244s Setting up r-cran-ragg (1.3.3-1) ...
244s Setting up r-cran-spatstat.explore (3.3-4-1) ...
244s Setting up r-cran-readr (2.1.6-1) ...
244s Setting up r-cran-tidyr (1.3.1-1) ...
244s Setting up r-cran-rcmdcheck (1.4.0-4) ...
244s Setting up r-cran-recipes (1.1.0+dfsg-1) ...
244s Setting up r-cran-roxygen2 (7.3.2-1) ...
244s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ...
244s Setting up r-cran-quantmod (0.4.28-1) ...
244s Setting up r-bioc-aroma.light (3.36.0-2) ...
244s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
244s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
244s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
244s Setting up r-cran-usethis (3.2.1-1) ...
244s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
244s Setting up r-cran-caret (7.0-1+dfsg-1) ...
244s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
244s Setting up r-cran-shinyjs (2.1.0-1build1) ...
244s Setting up r-cran-tseries (0.10-59-3) ...
244s Setting up r-cran-miniui (0.1.2-1) ...
244s Setting up r-cran-broom (1.0.12+dfsg-1) ...
244s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
244s Setting up r-cran-pkgdown (2.1.1-2) ...
244s Setting up r-cran-conquer (1.3.3-1) ...
244s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
244s Setting up r-cran-forecast (8.23.0-1) ...
244s Setting up r-cran-bookdown (0.42+dfsg-1) ...
244s Setting up r-cran-crosstalk (1.2.2+dfsg-1) ...
244s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
244s Setting up r-bioc-pwalign (1.2.0-3) ...
244s Setting up r-cran-quantreg (6.1-1) ...
244s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
244s Setting up r-bioc-annotationdbi (1.68.0-2) ...
244s Setting up r-cran-modelr (0.1.11-1) ...
244s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
244s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ...
244s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ...
244s Setting up r-cran-profvis (0.4.0+dfsg-1) ...
244s Setting up r-bioc-annotate (1.84.0+dfsg-2) ...
244s Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
244s Setting up r-cran-doby (4.7.1-3) ...
244s Setting up r-bioc-genefilter (1.88.0-2) ...
244s Setting up r-bioc-tcgabiolinks (2.34.1+dfsg-1) ...
244s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
244s Setting up r-bioc-genomicalignments (1.42.0-2) ...
244s Setting up r-bioc-rtracklayer (1.66.0-3) ...
244s Setting up r-cran-dt (0.34.0+dfsg-1) ...
244s Setting up r-cran-devtools (2.4.5-1) ...
244s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
244s Setting up r-bioc-experimenthub (2.14.0+ds-2) ...
244s Setting up r-cran-plotly (4.10.4+dfsg-4) ...
244s Setting up r-bioc-sva (3.54.0-2) ...
244s Setting up r-cran-pbkrtest (0.5.5-1) ...
244s Setting up r-cran-car (3.1-5-1) ...
244s Setting up r-bioc-shortread (1.64.0-3) ...
244s Setting up r-cran-seurat (5.2.1-5) ...
244s Setting up r-cran-rstatix (0.7.3-1) ...
244s Setting up r-bioc-edaseq (2.40.0+dfsg-2) ...
244s Setting up r-cran-ggpubr (0.6.0-1) ...
244s Setting up r-cran-survminer (0.5.0+dfsg-2) ...
244s Processing triggers for libc-bin (2.42-2ubuntu4) ...
244s Processing triggers for man-db (2.13.1-1build1) ...
245s Processing triggers for install-info (7.2-5) ...
245s Processing triggers for tex-common (6.20) ...
246s Running updmap-sys. This may take some time... done.
246s Running mktexlsr /var/lib/texmf ... done.
246s Building format(s) --all.
260s 	This may take some time... done.
261s autopkgtest [04:23:50]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
261s autopkgtest [04:23:50]: test pkg-r-autopkgtest: [-----------------------
261s Test: Try to load the R library TCGAbiolinks
261s 
261s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
261s Copyright (C) 2025 The R Foundation for Statistical Computing
261s Platform: x86_64-pc-linux-gnu
261s 
261s R is free software and comes with ABSOLUTELY NO WARRANTY.
261s You are welcome to redistribute it under certain conditions.
261s Type 'license()' or 'licence()' for distribution details.
261s 
261s R is a collaborative project with many contributors.
261s Type 'contributors()' for more information and
261s 'citation()' on how to cite R or R packages in publications.
261s 
261s Type 'demo()' for some demos, 'help()' for on-line help, or
261s 'help.start()' for an HTML browser interface to help.
261s Type 'q()' to quit R.
261s 
261s > library('TCGAbiolinks')
267s > 
267s Test: Run tests for TCGAbiolinks
267s Start: testthat.R
267s 
267s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
267s Copyright (C) 2025 The R Foundation for Statistical Computing
267s Platform: x86_64-pc-linux-gnu
267s 
267s R is free software and comes with ABSOLUTELY NO WARRANTY.
267s You are welcome to redistribute it under certain conditions.
267s Type 'license()' or 'licence()' for distribution details.
267s 
267s R is a collaborative project with many contributors.
267s Type 'contributors()' for more information and
267s 'citation()' on how to cite R or R packages in publications.
267s 
267s Type 'demo()' for some demos, 'help()' for on-line help, or
267s 'help.start()' for an HTML browser interface to help.
267s Type 'q()' to quit R.
267s 
267s > library(testthat)
267s > library(TCGAbiolinks)
273s > 
273s > test_check("TCGAbiolinks")
275s 
|                                                    |  0%                      
|==========================                          | 50% ~0 s remaining       
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 
285s 
|                                                    |  0%                      
|==========================                          | 50% ~0 s remaining       
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 
285s [1] "I need about  1 minute to finish complete  Enrichment analysis GO[BP,MF,CC] and Pathways... "
286s [1] "GO Enrichment Analysis BP completed....done"
286s [1] "GO Enrichment Analysis MF completed....done"
286s [1] "GO Enrichment Analysis CC completed....done"
286s [1] "Pathway Enrichment Analysis completed....done"
286s [ FAIL 0 | WARN 0 | SKIP 23 | PASS 25 ]
286s 
286s ══ Skipped tests (23) ══════════════════════════════════════════════════════════
287s • On CRAN (22): 'test-prepare-download.R:5:5', 'test-prepare-download.R:51:5',
287s   'test-prepare-download.R:94:5', 'test-prepare-download.R:104:5',
287s   'test-prepare-download.R:127:5', 'test-prepare-download.R:148:5',
287s   'test-prepare-download.R:167:5', 'test-prepare-download.R:186:5',
287s   'test-prepare-download.R:202:5', 'test-prepare-download.R:212:5',
287s   'test-prepare-download.R:224:5', 'test-prepare-download.R:249:5',
287s   'test-prepare-download.R:289:5', 'test-prepare-download.R:319:5',
287s   'test-prepare-download.R:350:5', 'test-prepare-download.R:384:5',
287s   'test-query.R:6:5', 'test-query.R:16:5', 'test-query.R:45:5',
287s   'test-query.R:79:5', 'test-query.R:120:5', 'test-query.R:140:5'
287s • Skip test downloading data (1): 'test-query-clinical.R:11:1'
287s 
287s [ FAIL 0 | WARN 0 | SKIP 23 | PASS 25 ]
287s > 
287s autopkgtest [04:24:16]: test pkg-r-autopkgtest: -----------------------]
287s autopkgtest [04:24:16]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
287s pkg-r-autopkgtest    PASS
288s autopkgtest [04:24:17]: @@@@@@@@@@@@@@@@@@@@ summary
288s pkg-r-autopkgtest    PASS