0s autopkgtest [04:18:15]: starting date and time: 2026-02-10 04:18:15+0000
  0s autopkgtest [04:18:15]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:18:15]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1ay4f0ty/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-savr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-4.secgroup --name adt-resolute-amd64-r-bioc-savr-20260210-041814-juju-7f2275-prod-proposed-migration-environment-15-e0ffc4e2-984f-4554-b604-092c363a146a --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-bioc-savr-20260210-041814-juju-7f2275-prod-proposed-migration-environment-15-e0ffc4e2-984f-4554-b604-092c363a146a from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 74s autopkgtest [04:19:29]: testbed dpkg architecture: amd64
 74s autopkgtest [04:19:29]: testbed apt version: 3.1.14
 75s autopkgtest [04:19:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [04:19:30]: testbed release detected to be: None
 75s autopkgtest [04:19:30]: updating testbed package index (apt update)
 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 76s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 76s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 76s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 76s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 76s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 76s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 77s Fetched 5189 kB in 1s (5256 kB/s)
 77s Reading package lists...
 78s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 78s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 78s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 79s Reading package lists...
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 79s Calculating upgrade...
 79s The following package was automatically installed and is no longer required:
 79s   libpython3.13
 79s Use 'sudo apt autoremove' to remove it.
 79s The following NEW packages will be installed:
 79s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 79s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 79s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 79s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 79s The following packages will be upgraded:
 79s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 79s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 79s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 79s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 79s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 79s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 79s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 79s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 79s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 79s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 79s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 79s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 79s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 79s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 79s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 79s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 79s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 79s Need to get 237 MB of archives.
 79s After this operation, 339 MB of additional disk space will be used.
 79s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 79s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 79s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 79s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 79s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 79s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 79s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 79s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 79s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 79s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 79s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 80s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 80s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 80s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 80s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 80s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 80s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 80s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 80s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 80s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 80s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 80s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 80s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 80s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 80s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 80s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 80s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 80s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 80s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 80s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 80s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 80s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 80s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 80s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 80s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 80s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 80s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 80s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 80s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 80s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 80s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 80s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 80s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 80s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 80s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 80s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 80s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 80s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 80s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 80s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 80s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 80s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 80s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 80s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 80s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 80s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 80s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 80s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 80s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 80s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 80s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 80s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 80s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 80s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 80s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 80s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 80s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 80s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 80s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 80s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 80s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 80s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 80s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 80s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 80s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 80s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 80s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 80s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 80s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 80s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 80s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 80s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 85s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 85s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 85s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 85s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 85s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 85s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 85s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 85s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 85s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 85s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 85s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 86s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 86s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 86s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 86s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 86s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 86s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 86s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 86s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 86s Fetched 237 MB in 7s (36.4 MB/s)
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 86s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 86s Setting up debianutils (5.23.2build1) ...
 86s (Reading database ... 
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 86s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 86s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 86s Setting up dash (0.5.12-12ubuntu3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 86s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 86s Setting up findutils (4.10.0-3build2) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 86s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 86s Setting up sed (4.9-2build3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 86s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 87s Setting up tar (1.35+dfsg-3.1build2) ...
 87s (Reading database ... 
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 95s Setting up libjansson4:amd64 (2.14-2build4) ...
 95s Setting up libglib2.0-data (2.87.2-2) ...
 95s Setting up pollinate (4.33-4ubuntu5) ...
106s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
106s Setting up libwrap0:amd64 (7.6.q-36build2) ...
106s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
107s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
107s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
107s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
107s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
107s Setting up patch (2.8-2build1) ...
107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
107s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
107s Setting up lsof (4.99.4+dfsg-2build2) ...
107s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
107s Setting up dracut-install (109-11ubuntu1) ...
107s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
107s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
107s Setting up pnp.ids (0.394-1build1) ...
107s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
107s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
107s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
107s Setting up mawk (1.3.4.20260129-1) ...
107s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
107s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
107s Setting up linux-image-virtual (6.19.0-3.3) ...
107s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
107s Setting up libbsd0:amd64 (0.12.2-2build2) ...
107s Setting up libdrm-common (2.4.131-1) ...
107s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
107s Setting up dbus-bin (1.16.2-2ubuntu3) ...
107s Setting up libonig5:amd64 (6.9.10-1build1) ...
107s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
107s Setting up ethtool (1:6.15-3build1) ...
107s Setting up python3-referencing (0.36.2-1ubuntu2) ...
107s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
107s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
107s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
107s Setting up tcpdump (4.99.5-2ubuntu3) ...
107s Setting up linux-image-generic (6.19.0-3.3) ...
107s Setting up wget (1.25.0-2ubuntu4) ...
107s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
107s Setting up iptables (1.8.11-2ubuntu3) ...
107s Setting up iproute2 (6.18.0-1ubuntu1) ...
107s Setting up linux-headers-generic (6.19.0-3.3) ...
107s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
107s Setting up hwdata (0.394-1build1) ...
107s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
107s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
107s No schema files found: doing nothing.
107s Setting up dbus (1.16.2-2ubuntu3) ...
107s A reboot is required to replace the running dbus-daemon.
107s Please reboot the system when convenient.
108s Setting up shared-mime-info (2.4-5build3) ...
108s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
108s Setting up pciutils (1:3.14.0-1build2) ...
108s Setting up python3-markdown-it (3.0.0-3build1) ...
109s Setting up libdrm2:amd64 (2.4.131-1) ...
109s Setting up libpython3.14:amd64 (3.14.2-1) ...
109s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
109s Setting up linux-tools-common (6.19.0-3.3) ...
109s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
109s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
109s Setting up apt (3.1.15) ...
109s Setting up linux-headers-virtual (6.19.0-3.3) ...
109s Setting up linux-generic (6.19.0-3.3) ...
109s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
109s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
109s Setting up ubuntu-standard (1.564) ...
109s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
109s Setting up linux-virtual (6.19.0-3.3) ...
109s Setting up linux-perf (6.19.0-3.3) ...
109s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
109s Processing triggers for debianutils (5.23.2build1) ...
109s Processing triggers for install-info (7.2-5) ...
109s Processing triggers for initramfs-tools (0.150ubuntu7) ...
109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
113s Processing triggers for libc-bin (2.42-2ubuntu4) ...
113s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
113s /etc/kernel/postinst.d/initramfs-tools:
113s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
117s /etc/kernel/postinst.d/zz-update-grub:
117s Sourcing file `/etc/default/grub'
117s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
117s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
117s Generating grub configuration file ...
117s Found linux image: /boot/vmlinuz-6.19.0-3-generic
117s Found initrd image: /boot/initrd.img-6.19.0-3-generic
117s Found linux image: /boot/vmlinuz-6.18.0-9-generic
117s Found initrd image: /boot/initrd.img-6.18.0-9-generic
117s Warning: os-prober will not be executed to detect other bootable partitions.
117s Systems on them will not be added to the GRUB boot configuration.
117s Check GRUB_DISABLE_OS_PROBER documentation entry.
117s Adding boot menu entry for UEFI Firmware Settings ...
117s done
117s autopkgtest [04:20:12]: upgrading testbed (apt dist-upgrade and autopurge)
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
118s The following package was automatically installed and is no longer required:
118s   libpython3.13
118s Use 'sudo apt autoremove' to remove it.
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Solving dependencies...
119s The following packages will be REMOVED:
119s   libpython3.13*
119s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
119s After this operation, 7599 kB disk space will be freed.
119s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
119s Removing libpython3.13:amd64 (3.13.11-1) ...
119s Processing triggers for libc-bin (2.42-2ubuntu4) ...
119s autopkgtest [04:20:14]: rebooting testbed after setup commands that affected boot
148s autopkgtest [04:20:43]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
150s autopkgtest [04:20:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-savr
151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-savr 1.37.0-6 (dsc) [2104 B]
151s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-savr 1.37.0-6 (tar) [487 kB]
151s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-savr 1.37.0-6 (diff) [14.4 kB]
151s gpgv: Signature made Sat Jan 11 17:16:21 2025 UTC
151s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
151s gpgv:                issuer "crusoe@debian.org"
151s gpgv: Can't check signature: No public key
151s dpkg-source: warning: cannot verify inline signature for ./r-bioc-savr_1.37.0-6.dsc: no acceptable signature found
151s autopkgtest [04:20:46]: testing package r-bioc-savr version 1.37.0-6
152s autopkgtest [04:20:47]: build not needed
152s autopkgtest [04:20:47]: test pkg-r-autopkgtest: preparing testbed
153s Reading package lists...
153s Building dependency tree...
153s Reading state information...
153s Solving dependencies...
153s The following NEW packages will be installed:
153s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
153s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
153s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
153s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
153s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
153s   libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
153s   libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
153s   libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3
153s   libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0
153s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
153s   liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
153s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
153s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
153s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
153s   libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libtcl8.6 libthai-data
153s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7
153s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev
153s   linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
153s   r-bioc-biocgenerics r-bioc-savr r-cran-brio r-cran-cairo r-cran-callr
153s   r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
153s   r-cran-evaluate r-cran-farver r-cran-fs r-cran-ggplot2 r-cran-glue
153s   r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-jsonlite
153s   r-cran-labeling r-cran-lifecycle r-cran-littler r-cran-magrittr
153s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise
153s   r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
153s   r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-s7 r-cran-scales
153s   r-cran-stringi r-cran-stringr r-cran-testthat r-cran-vctrs
153s   r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xml rpcsvc-proto unzip
153s   x11-common xdg-utils zip zlib1g-dev
153s 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded.
153s Need to get 182 MB of archives.
153s After this operation, 539 MB of additional disk space will be used.
153s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
153s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
153s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
153s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
153s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
153s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
153s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
153s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
154s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
154s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
154s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
154s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
154s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
154s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
154s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
154s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
154s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
154s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
154s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
154s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
154s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
154s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
154s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
154s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
154s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
154s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
155s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
155s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
155s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
155s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
155s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
155s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
155s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
155s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
155s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
155s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
155s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
155s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
155s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
155s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
155s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
155s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
155s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
155s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
155s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
155s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
155s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
155s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
155s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
155s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
155s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
155s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
155s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
155s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
155s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
155s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
155s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
155s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
155s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
155s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
156s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
156s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
156s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
156s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
156s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
156s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
156s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
156s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
156s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
156s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
156s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
156s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
156s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
156s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
156s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
156s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
156s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
156s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
156s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
156s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
156s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
156s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
156s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
156s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
156s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
156s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
156s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
156s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
156s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
156s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
156s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
156s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
156s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
156s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
156s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
156s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
156s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
156s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
156s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
157s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
157s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
157s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
157s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
157s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
157s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
157s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
157s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
157s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
157s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
157s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
157s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
157s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
157s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
157s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
157s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
157s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
157s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
157s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
157s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
157s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
157s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
157s Get:122 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
157s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
157s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
157s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
157s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
157s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
157s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
158s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
158s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
158s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB]
158s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB]
159s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-savr all 1.37.0-6 [695 kB]
159s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
159s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB]
159s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
159s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
159s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
159s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
159s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
159s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
160s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
160s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
160s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
160s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
160s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
160s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
160s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
160s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
160s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
160s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
161s Preconfiguring packages ...
161s Fetched 182 MB in 8s (24.1 MB/s)
161s Selecting previously unselected package libc-dev-bin.
161s (Reading database ... 
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(Reading database ... 125269 files and directories currently installed.)
161s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
161s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
161s Selecting previously unselected package linux-libc-dev:amd64.
161s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
161s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
161s Selecting previously unselected package libcrypt-dev:amd64.
161s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
161s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
161s Selecting previously unselected package rpcsvc-proto.
161s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
161s Unpacking rpcsvc-proto (1.4.3-1build1) ...
161s Selecting previously unselected package libc6-dev:amd64.
161s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
161s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
161s Selecting previously unselected package libisl23:amd64.
161s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
161s Unpacking libisl23:amd64 (0.27-1build1) ...
161s Selecting previously unselected package libmpc3:amd64.
161s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
161s Unpacking libmpc3:amd64 (1.3.1-2) ...
161s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
161s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
161s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
161s Selecting previously unselected package cpp-15.
161s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
161s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
161s Selecting previously unselected package cpp-x86-64-linux-gnu.
161s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
161s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
161s Selecting previously unselected package cpp.
161s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
161s Unpacking cpp (4:15.2.0-4ubuntu1) ...
161s Selecting previously unselected package libcc1-0:amd64.
161s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libgomp1:amd64.
161s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libitm1:amd64.
161s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libasan8:amd64.
161s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package liblsan0:amd64.
161s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libtsan2:amd64.
161s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libubsan1:amd64.
161s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libhwasan0:amd64.
161s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libquadmath0:amd64.
161s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
161s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
161s Selecting previously unselected package libgcc-15-dev:amd64.
162s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
162s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package gcc-15.
162s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package gcc-x86-64-linux-gnu.
162s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
162s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
162s Selecting previously unselected package gcc.
162s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
162s Unpacking gcc (4:15.2.0-4ubuntu1) ...
162s Selecting previously unselected package libstdc++-15-dev:amd64.
162s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package g++-15-x86-64-linux-gnu.
162s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package g++-15.
162s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking g++-15 (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package g++-x86-64-linux-gnu.
162s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
162s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
162s Selecting previously unselected package g++.
162s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
162s Unpacking g++ (4:15.2.0-4ubuntu1) ...
162s Selecting previously unselected package build-essential.
162s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
162s Unpacking build-essential (12.12ubuntu2) ...
162s Selecting previously unselected package dctrl-tools.
162s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
162s Unpacking dctrl-tools (2.24-3build4) ...
162s Selecting previously unselected package fonts-dejavu-mono.
162s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
162s Unpacking fonts-dejavu-mono (2.37-8build1) ...
162s Selecting previously unselected package fonts-dejavu-core.
162s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
162s Unpacking fonts-dejavu-core (2.37-8build1) ...
162s Selecting previously unselected package fontconfig-config.
162s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
162s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package libfontconfig1:amd64.
162s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
162s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package fontconfig.
162s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
162s Unpacking fontconfig (2.17.1-3ubuntu1) ...
162s Selecting previously unselected package libgfortran5:amd64.
162s Preparing to unpack .../037-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
162s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
162s Selecting previously unselected package libgfortran-15-dev:amd64.
162s Preparing to unpack .../038-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
162s Preparing to unpack .../039-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package gfortran-15.
162s Preparing to unpack .../040-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
162s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
162s Selecting previously unselected package gfortran-x86-64-linux-gnu.
162s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
162s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
162s Selecting previously unselected package gfortran.
162s Preparing to unpack .../042-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
162s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
162s Selecting previously unselected package icu-devtools.
162s Preparing to unpack .../043-icu-devtools_78.2-1ubuntu1_amd64.deb ...
162s Unpacking icu-devtools (78.2-1ubuntu1) ...
163s Selecting previously unselected package libblas3:amd64.
163s Preparing to unpack .../044-libblas3_3.12.1-7ubuntu1_amd64.deb ...
163s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
163s Selecting previously unselected package libblas-dev:amd64.
163s Preparing to unpack .../045-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
163s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
163s Selecting previously unselected package libbz2-dev:amd64.
163s Preparing to unpack .../046-libbz2-dev_1.0.8-6build2_amd64.deb ...
163s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
163s Selecting previously unselected package libpixman-1-0:amd64.
163s Preparing to unpack .../047-libpixman-1-0_0.46.4-1_amd64.deb ...
163s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
163s Selecting previously unselected package libxcb-render0:amd64.
163s Preparing to unpack .../048-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
163s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
163s Selecting previously unselected package libxcb-shm0:amd64.
163s Preparing to unpack .../049-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
163s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
163s Selecting previously unselected package libxrender1:amd64.
163s Preparing to unpack .../050-libxrender1_1%3a0.9.12-1_amd64.deb ...
163s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
163s Selecting previously unselected package libcairo2:amd64.
163s Preparing to unpack .../051-libcairo2_1.18.4-3_amd64.deb ...
163s Unpacking libcairo2:amd64 (1.18.4-3) ...
163s Selecting previously unselected package libdatrie1:amd64.
163s Preparing to unpack .../052-libdatrie1_0.2.14-1_amd64.deb ...
163s Unpacking libdatrie1:amd64 (0.2.14-1) ...
163s Selecting previously unselected package libdeflate0:amd64.
163s Preparing to unpack .../053-libdeflate0_1.23-2build1_amd64.deb ...
163s Unpacking libdeflate0:amd64 (1.23-2build1) ...
163s Selecting previously unselected package libdeflate-dev:amd64.
163s Preparing to unpack .../054-libdeflate-dev_1.23-2build1_amd64.deb ...
163s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
163s Selecting previously unselected package libgraphite2-3:amd64.
163s Preparing to unpack .../055-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
163s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
163s Selecting previously unselected package libharfbuzz0b:amd64.
163s Preparing to unpack .../056-libharfbuzz0b_12.3.2-1_amd64.deb ...
163s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
163s Selecting previously unselected package x11-common.
163s Preparing to unpack .../057-x11-common_1%3a7.7+24ubuntu1_all.deb ...
163s Unpacking x11-common (1:7.7+24ubuntu1) ...
163s Selecting previously unselected package libice6:amd64.
163s Preparing to unpack .../058-libice6_2%3a1.1.1-1build1_amd64.deb ...
163s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
163s Selecting previously unselected package libicu-dev:amd64.
163s Preparing to unpack .../059-libicu-dev_78.2-1ubuntu1_amd64.deb ...
163s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
163s Selecting previously unselected package libjpeg-turbo8:amd64.
163s Preparing to unpack .../060-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
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165s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
165s Setting up libpixman-1-0:amd64 (0.46.4-1) ...
165s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
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165s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
165s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
165s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ...
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165s Setting up libwebp7:amd64 (1.5.0-0.1build1) ...
165s Setting up liblzma-dev:amd64 (5.8.2-2) ...
165s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ...
165s Setting up libpcre2-posix3:amd64 (10.46-1) ...
165s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ...
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165s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ...
165s Setting up libisl23:amd64 (0.27-1build1) ...
165s Setting up libc-dev-bin (2.42-2ubuntu4) ...
165s Setting up libdeflate-dev:amd64 (1.23-2build1) ...
165s Setting up xdg-utils (1.2.1-2ubuntu2) ...
165s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
165s Setting up libcc1-0:amd64 (16-20260208-1ubuntu1) ...
165s Setting up liblsan0:amd64 (16-20260208-1ubuntu1) ...
165s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ...
165s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
165s Setting up dctrl-tools (2.24-3build4) ...
165s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ...
165s Setting up libjpeg8:amd64 (8c-2ubuntu12) ...
165s Setting up libice6:amd64 (2:1.1.1-1build1) ...
165s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ...
165s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
165s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
165s Setting up fontconfig-config (2.17.1-3ubuntu1) ...
165s Setting up libpaper-utils (2.2.5-0.3build1) ...
165s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
165s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
165s Setting up pkgconf:amd64 (1.8.1-4build1) ...
165s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
165s Setting up libthai0:amd64 (0.1.30-1) ...
165s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
165s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
165s Setting up cpp-15 (15.2.0-12ubuntu1) ...
165s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ...
165s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ...
165s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
165s Setting up libsm6:amd64 (2:1.2.6-1build1) ...
165s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ...
165s Setting up libbz2-dev:amd64 (1.0.8-6build2) ...
165s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
165s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
165s Setting up fontconfig (2.17.1-3ubuntu1) ...
167s Regenerating fonts cache... done.
167s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
167s Setting up libxft2:amd64 (2.3.6-1build2) ...
167s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
167s Setting up libpcre2-dev:amd64 (10.46-1) ...
167s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
167s Setting up libtk8.6:amd64 (8.6.17-1) ...
167s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
167s Setting up libreadline-dev:amd64 (8.3-3) ...
167s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
167s Setting up libcairo2:amd64 (1.18.4-3) ...
167s Setting up gcc-15 (15.2.0-12ubuntu1) ...
167s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
167s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
167s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
167s Setting up cpp (4:15.2.0-4ubuntu1) ...
167s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
167s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ...
167s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
167s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
167s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
167s Setting up libpng-dev:amd64 (1.6.54-1) ...
167s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ...
167s Setting up gcc (4:15.2.0-4ubuntu1) ...
167s Setting up r-base-core (4.5.2-1ubuntu2) ...
167s Creating config file /etc/R/Renviron with new version
167s Setting up r-cran-crayon (1.5.3-1) ...
167s Setting up r-cran-labeling (0.4.3-1) ...
167s Setting up r-cran-ps (1.9.0-1) ...
167s Setting up r-cran-farver (2.1.2-1) ...
167s Setting up r-cran-xml (3.99-0.20-1) ...
167s Setting up r-cran-viridislite (0.4.3-1) ...
167s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
167s Setting up r-cran-r6 (2.6.1-1) ...
167s Setting up r-cran-pkgkitten (0.2.4-1) ...
167s Setting up g++-15 (15.2.0-12ubuntu1) ...
167s Setting up r-cran-magrittr (2.0.3-1) ...
167s Setting up r-cran-littler (0.3.22-1) ...
167s Setting up r-cran-fs (1.6.5+dfsg-1) ...
167s Setting up r-cran-rcpp (1.1.0-1) ...
167s Setting up r-cran-brio (1.1.5-1) ...
167s Setting up r-cran-diffobj (0.3.5-1build1) ...
167s Setting up r-bioc-biocgenerics (0.52.0-2) ...
167s Setting up r-cran-rlang (1.1.5-3) ...
167s Setting up r-cran-withr (3.0.2+dfsg-1) ...
167s Setting up r-cran-processx (3.8.6-1) ...
167s Setting up r-cran-praise (1.0.0-4build2) ...
167s Setting up r-cran-digest (0.6.39-1) ...
167s Setting up r-cran-evaluate (1.0.5-1) ...
167s Setting up r-cran-cairo (1.6-2-1) ...
167s Setting up r-cran-glue (1.8.0-1) ...
167s Setting up r-cran-cli (3.6.4-1) ...
167s Setting up gfortran (4:15.2.0-4ubuntu1) ...
167s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
167s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
167s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
167s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
167s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
167s Setting up r-cran-rprojroot (2.1.1-1) ...
167s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
167s Setting up r-cran-stringi (1.8.4-1build2) ...
167s Setting up r-cran-s7 (0.2.0-1) ...
167s Setting up r-cran-plyr (1.8.9-1) ...
167s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
167s Setting up r-cran-isoband (0.2.7-1) ...
167s Setting up r-cran-waldo (0.6.2-1) ...
167s Setting up r-cran-scales (1.4.0-1) ...
167s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
167s Setting up g++ (4:15.2.0-4ubuntu1) ...
167s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
167s Setting up build-essential (12.12ubuntu2) ...
167s Setting up r-cran-vctrs (0.6.5-1) ...
167s Setting up r-base-dev (4.5.2-1ubuntu2) ...
167s Setting up r-cran-stringr (1.5.1-1) ...
167s Setting up r-cran-callr (3.7.6-1) ...
167s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
167s Setting up r-cran-desc (1.4.3-1) ...
167s Setting up r-cran-reshape2 (1.4.4-2build2) ...
167s Setting up r-cran-gridextra (2.3-3build2) ...
167s Setting up pkg-r-autopkgtest (20250812) ...
167s Setting up r-cran-pkgbuild (1.4.8-1) ...
167s Setting up r-cran-pkgload (1.4.1-1) ...
167s Setting up r-bioc-savr (1.37.0-6) ...
167s Setting up r-cran-testthat (3.2.3-1) ...
167s Processing triggers for libc-bin (2.42-2ubuntu4) ...
167s Processing triggers for man-db (2.13.1-1build1) ...
168s Processing triggers for install-info (7.2-5) ...
169s autopkgtest [04:21:04]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
169s autopkgtest [04:21:04]: test pkg-r-autopkgtest: [-----------------------
169s Test: Try to load the R library savR
170s 
170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
170s Copyright (C) 2025 The R Foundation for Statistical Computing
170s Platform: x86_64-pc-linux-gnu
170s 
170s R is free software and comes with ABSOLUTELY NO WARRANTY.
170s You are welcome to redistribute it under certain conditions.
170s Type 'license()' or 'licence()' for distribution details.
170s 
170s R is a collaborative project with many contributors.
170s Type 'contributors()' for more information and
170s 'citation()' on how to cite R or R packages in publications.
170s 
170s Type 'demo()' for some demos, 'help()' for on-line help, or
170s 'help.start()' for an HTML browser interface to help.
170s Type 'q()' to quit R.
170s 
170s > library('savR')
170s Loading required package: ggplot2
170s > 
170s Test: Run tests for savR
170s Start: testthat.R
170s 
170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
170s Copyright (C) 2025 The R Foundation for Statistical Computing
170s Platform: x86_64-pc-linux-gnu
170s 
170s R is free software and comes with ABSOLUTELY NO WARRANTY.
170s You are welcome to redistribute it under certain conditions.
170s Type 'license()' or 'licence()' for distribution details.
170s 
170s R is a collaborative project with many contributors.
170s Type 'contributors()' for more information and
170s 'citation()' on how to cite R or R packages in publications.
170s 
170s Type 'demo()' for some demos, 'help()' for on-line help, or
170s 'help.start()' for an HTML browser interface to help.
170s Type 'q()' to quit R.
170s 
170s > library(testthat)
170s > library(savR)
170s Loading required package: ggplot2
171s > 
171s > test_check("savR")
173s [ FAIL 0 | WARN 0 | SKIP 7 | PASS 8 ]
173s 
173s ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
173s • On CRAN (6): 'test_accessors.R:30:3', 'test_load.R:30:3', 'test_load.R:45:3',
173s   'test_load.R:52:3', 'test_load.R:58:3', 'test_load.R:65:3'
173s • Test data folder not available (1): 'test_load.R:40:3'
173s 
173s [ FAIL 0 | WARN 0 | SKIP 7 | PASS 8 ]
173s > 
174s autopkgtest [04:21:09]: test pkg-r-autopkgtest: -----------------------]
174s autopkgtest [04:21:09]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
174s pkg-r-autopkgtest    PASS
175s autopkgtest [04:21:10]: @@@@@@@@@@@@@@@@@@@@ summary
175s pkg-r-autopkgtest    PASS