0s autopkgtest [04:17:56]: starting date and time: 2026-02-10 04:17:56+0000
  0s autopkgtest [04:17:56]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:17:56]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u2fgjr3l/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-saturn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-13.secgroup --name adt-resolute-amd64-r-bioc-saturn-20260210-041756-juju-7f2275-prod-proposed-migration-environment-15-02fe57b1-266a-4132-8ccb-75194937247b --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-bioc-saturn-20260210-041756-juju-7f2275-prod-proposed-migration-environment-15-02fe57b1-266a-4132-8ccb-75194937247b from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 72s autopkgtest [04:19:08]: testbed dpkg architecture: amd64
 73s autopkgtest [04:19:09]: testbed apt version: 3.1.14
 73s autopkgtest [04:19:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 73s autopkgtest [04:19:09]: testbed release detected to be: None
 74s autopkgtest [04:19:10]: updating testbed package index (apt update)
 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 74s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 74s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 74s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 74s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 74s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 74s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 74s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 75s Fetched 5189 kB in 1s (5031 kB/s)
 76s Reading package lists...
 76s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 77s Reading package lists...
 77s Reading package lists...
 77s Building dependency tree...
 77s Reading state information...
 77s Calculating upgrade...
 78s The following package was automatically installed and is no longer required:
 78s   libpython3.13
 78s Use 'sudo apt autoremove' to remove it.
 78s The following NEW packages will be installed:
 78s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 78s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 78s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 78s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 78s The following packages will be upgraded:
 78s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 78s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 78s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 78s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 78s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 78s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 78s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 78s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 78s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 78s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 78s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 78s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 78s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 78s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 78s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 78s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 78s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 237 MB of archives.
 78s After this operation, 339 MB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 78s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 78s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 78s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 78s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 78s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 78s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 78s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 78s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 78s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 78s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 78s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 78s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 78s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 78s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 78s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 78s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 78s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 78s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 78s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 78s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 78s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 78s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 78s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 78s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 78s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 78s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 78s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 78s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 78s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 78s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 78s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 78s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 79s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 79s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 79s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 79s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 79s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 79s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 79s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 79s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 79s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 79s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 79s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 79s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 79s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 79s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 79s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 79s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 79s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 79s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 79s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 79s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 79s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 79s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 79s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 79s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 79s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 79s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 79s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 79s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 79s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 79s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 79s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 79s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 79s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 79s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 79s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 79s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 79s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 86s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 87s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 87s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 87s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 87s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 87s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 87s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 87s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 87s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 87s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 87s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 87s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 87s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 87s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 87s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 87s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 87s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 87s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 88s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 88s Fetched 237 MB in 10s (24.2 MB/s)
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 88s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 88s Setting up debianutils (5.23.2build1) ...
 88s (Reading database ... 
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 88s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 88s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 88s Setting up dash (0.5.12-12ubuntu3) ...
 88s (Reading database ... 
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 88s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 88s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 88s Setting up findutils (4.10.0-3build2) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 88s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 88s Setting up sed (4.9-2build3) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 88s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 88s Setting up tar (1.35+dfsg-3.1build2) ...
 88s (Reading database ... 
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 98s Setting up libjansson4:amd64 (2.14-2build4) ...
 98s Setting up libglib2.0-data (2.87.2-2) ...
 98s Setting up pollinate (4.33-4ubuntu5) ...
108s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
108s Setting up libwrap0:amd64 (7.6.q-36build2) ...
108s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
109s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
109s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
109s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
109s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
109s Setting up patch (2.8-2build1) ...
109s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
109s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
109s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
109s Setting up lsof (4.99.4+dfsg-2build2) ...
109s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
110s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
110s Setting up dracut-install (109-11ubuntu1) ...
110s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
110s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
110s Setting up pnp.ids (0.394-1build1) ...
110s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
110s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
110s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
110s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
110s Setting up mawk (1.3.4.20260129-1) ...
110s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
110s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
110s Setting up linux-image-virtual (6.19.0-3.3) ...
110s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
110s Setting up libbsd0:amd64 (0.12.2-2build2) ...
110s Setting up libdrm-common (2.4.131-1) ...
110s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
110s Setting up dbus-bin (1.16.2-2ubuntu3) ...
110s Setting up libonig5:amd64 (6.9.10-1build1) ...
110s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
110s Setting up ethtool (1:6.15-3build1) ...
110s Setting up python3-referencing (0.36.2-1ubuntu2) ...
110s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
110s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
110s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
110s Setting up tcpdump (4.99.5-2ubuntu3) ...
110s Setting up linux-image-generic (6.19.0-3.3) ...
110s Setting up wget (1.25.0-2ubuntu4) ...
110s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
110s Setting up iptables (1.8.11-2ubuntu3) ...
110s Setting up iproute2 (6.18.0-1ubuntu1) ...
110s Setting up linux-headers-generic (6.19.0-3.3) ...
110s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
110s Setting up hwdata (0.394-1build1) ...
110s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
110s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
110s No schema files found: doing nothing.
110s Setting up dbus (1.16.2-2ubuntu3) ...
110s A reboot is required to replace the running dbus-daemon.
110s Please reboot the system when convenient.
110s Setting up shared-mime-info (2.4-5build3) ...
111s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
111s Setting up pciutils (1:3.14.0-1build2) ...
111s Setting up python3-markdown-it (3.0.0-3build1) ...
111s Setting up libdrm2:amd64 (2.4.131-1) ...
111s Setting up libpython3.14:amd64 (3.14.2-1) ...
111s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
111s Setting up linux-tools-common (6.19.0-3.3) ...
111s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
111s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
111s Setting up apt (3.1.15) ...
111s Setting up linux-headers-virtual (6.19.0-3.3) ...
111s Setting up linux-generic (6.19.0-3.3) ...
112s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
112s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
112s Setting up ubuntu-standard (1.564) ...
112s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
112s Setting up linux-virtual (6.19.0-3.3) ...
112s Setting up linux-perf (6.19.0-3.3) ...
112s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
112s Processing triggers for debianutils (5.23.2build1) ...
112s Processing triggers for install-info (7.2-5) ...
112s Processing triggers for initramfs-tools (0.150ubuntu7) ...
112s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
116s Processing triggers for libc-bin (2.42-2ubuntu4) ...
116s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
116s /etc/kernel/postinst.d/initramfs-tools:
116s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
120s /etc/kernel/postinst.d/zz-update-grub:
120s Sourcing file `/etc/default/grub'
120s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
120s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
120s Generating grub configuration file ...
120s Found linux image: /boot/vmlinuz-6.19.0-3-generic
120s Found initrd image: /boot/initrd.img-6.19.0-3-generic
120s Found linux image: /boot/vmlinuz-6.18.0-9-generic
120s Found initrd image: /boot/initrd.img-6.18.0-9-generic
120s Warning: os-prober will not be executed to detect other bootable partitions.
120s Systems on them will not be added to the GRUB boot configuration.
120s Check GRUB_DISABLE_OS_PROBER documentation entry.
120s Adding boot menu entry for UEFI Firmware Settings ...
120s done
120s autopkgtest [04:19:56]: upgrading testbed (apt dist-upgrade and autopurge)
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s Calculating upgrade...
121s The following package was automatically installed and is no longer required:
121s   libpython3.13
121s Use 'sudo apt autoremove' to remove it.
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s Solving dependencies...
122s The following packages will be REMOVED:
122s   libpython3.13*
122s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
122s After this operation, 7599 kB disk space will be freed.
122s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
122s Removing libpython3.13:amd64 (3.13.11-1) ...
122s Processing triggers for libc-bin (2.42-2ubuntu4) ...
122s autopkgtest [04:19:58]: rebooting testbed after setup commands that affected boot
150s autopkgtest [04:20:26]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
152s autopkgtest [04:20:28]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-saturn
154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-saturn 1.14.0+dfsg-2 (dsc) [2224 B]
154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-saturn 1.14.0+dfsg-2 (tar) [2945 kB]
154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-saturn 1.14.0+dfsg-2 (diff) [5676 B]
155s gpgv: Signature made Mon Jan 13 08:15:45 2025 UTC
155s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
155s gpgv:                issuer "crusoe@debian.org"
155s gpgv: Can't check signature: No public key
155s dpkg-source: warning: cannot verify inline signature for ./r-bioc-saturn_1.14.0+dfsg-2.dsc: no acceptable signature found
155s autopkgtest [04:20:31]: testing package r-bioc-saturn version 1.14.0+dfsg-2
155s autopkgtest [04:20:31]: build not needed
156s autopkgtest [04:20:32]: test pkg-r-autopkgtest: preparing testbed
156s Reading package lists...
157s Building dependency tree...
157s Reading state information...
157s Solving dependencies...
157s The following NEW packages will be installed:
157s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
157s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
157s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
157s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
157s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
157s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
157s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
157s   libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2
157s   libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
157s   libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3
157s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
157s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
157s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
157s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
157s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
157s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
157s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
157s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
157s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev
157s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
157s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
157s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0
157s   libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6
157s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
157s   libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
157s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev
157s   libzzip-0-13t64 linux-libc-dev node-bootstrap-sass node-html5shiv
157s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
157s   r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
157s   r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase
157s   r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
157s   r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings
157s   r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger
157s   r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
157s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
157s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma
157s   r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools
157s   r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-saturn
157s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils
157s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc
157s   r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops
157s   r-cran-blob r-cran-bookdown r-cran-boot r-cran-brio r-cran-bslib
157s   r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark
157s   r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr
157s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate
157s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome
157s   r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options
157s   r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr
157s   r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-httr2
157s   r-cran-hwriter r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr
157s   r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval
157s   r-cran-lifecycle r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr
157s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
157s   r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
157s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise
157s   r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps
157s   r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
157s   r-cran-rcpparmadillo r-cran-rcurl r-cran-restfulr r-cran-rex r-cran-rjson
157s   r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-s7
157s   r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools
157s   r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys
157s   r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex
157s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr
157s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto
157s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
157s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
157s 0 upgraded, 320 newly installed, 0 to remove and 0 not upgraded.
157s Need to get 481 MB of archives.
157s After this operation, 1455 MB of additional disk space will be used.
157s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
157s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
158s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
158s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
158s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
158s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
158s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
158s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
159s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
159s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
159s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
159s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
159s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
159s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
159s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
159s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
159s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
159s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
159s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
159s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
159s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
160s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
161s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
161s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
161s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
161s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
161s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
161s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
161s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
161s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
161s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
161s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
161s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
161s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
161s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
161s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
161s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
161s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
161s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
161s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB]
161s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
162s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
162s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
162s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
162s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
162s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
162s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
162s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
162s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
162s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
162s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB]
162s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB]
162s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
162s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
162s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
163s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
163s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
163s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
163s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
163s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
163s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
163s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
163s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
163s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
163s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
163s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
163s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
163s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
163s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
163s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
163s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
163s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
163s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
163s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
163s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
163s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
163s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
163s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
163s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
163s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
163s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
163s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
163s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
163s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
163s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
163s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
163s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
163s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
163s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
163s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
163s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB]
163s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
163s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
164s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
164s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
164s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB]
164s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
164s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
164s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
164s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
164s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
164s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
164s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
164s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
164s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
164s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
164s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
164s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
164s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
164s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
164s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
164s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB]
164s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB]
164s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
164s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
164s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
164s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB]
164s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
164s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB]
164s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB]
164s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
164s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
164s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
164s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
164s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
164s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
164s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
164s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB]
164s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB]
164s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB]
164s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB]
164s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
164s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB]
164s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
164s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
164s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
164s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
164s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
165s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
165s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
165s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
165s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
166s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
166s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
166s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
166s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
166s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
166s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
166s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
166s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
166s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
166s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
166s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
166s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
166s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB]
166s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
166s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
167s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
167s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
167s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
167s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB]
167s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
167s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
167s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
167s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
167s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB]
167s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
167s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
167s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
167s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
167s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
167s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
167s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
167s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
167s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
167s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
167s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
167s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
167s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
167s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
167s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
167s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
167s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
167s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
168s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
168s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
168s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB]
168s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
168s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB]
169s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
169s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB]
169s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB]
169s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
169s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
169s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
169s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
169s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
169s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
169s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
169s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
169s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
169s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB]
169s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
169s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
169s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
169s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB]
169s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB]
169s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
169s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
169s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
169s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
169s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
169s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB]
169s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
169s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
169s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
169s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
169s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
169s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
169s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
169s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
169s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
169s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
169s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
169s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
169s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
169s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
169s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
169s Get:229 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
170s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
170s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
170s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
170s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
170s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
170s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
170s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
170s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
170s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
170s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
170s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
170s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
170s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
170s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
170s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
170s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
170s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
170s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
170s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
170s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
170s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB]
170s Get:251 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB]
170s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB]
171s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB]
171s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB]
172s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB]
175s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
175s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB]
175s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
175s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
175s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB]
175s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB]
175s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB]
175s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
175s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
176s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
176s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
176s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
176s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
176s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB]
176s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
176s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
176s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB]
176s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
176s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
176s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
176s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
176s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
176s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
176s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
176s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
176s Get:281 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
177s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
177s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB]
177s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
177s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
177s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB]
178s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB]
179s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
179s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB]
179s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB]
181s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB]
181s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-dexseq all 1.52.0+dfsg-2 [453 kB]
181s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB]
182s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB]
182s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB]
182s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB]
183s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB]
183s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB]
183s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rtracklayer amd64 1.66.0-3 [5225 kB]
184s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
184s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB]
184s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB]
184s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfdr all 1.1-8-2 [306 kB]
184s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB]
184s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-boot all 1.3-32-1 [636 kB]
184s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-saturn all 1.14.0+dfsg-2 [2955 kB]
185s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
185s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
185s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
185s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
185s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB]
185s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB]
185s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
185s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
185s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
185s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
185s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
185s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
185s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
185s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
186s Preconfiguring packages ...
186s Fetched 481 MB in 28s (16.9 MB/s)
186s Selecting previously unselected package libc-dev-bin.
186s (Reading database ... 
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(Reading database ... 125269 files and directories currently installed.)
186s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
186s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
186s Selecting previously unselected package linux-libc-dev:amd64.
186s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
186s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
186s Selecting previously unselected package libcrypt-dev:amd64.
186s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
186s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
186s Selecting previously unselected package rpcsvc-proto.
186s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
186s Unpacking rpcsvc-proto (1.4.3-1build1) ...
186s Selecting previously unselected package libc6-dev:amd64.
186s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
186s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
186s Selecting previously unselected package libisl23:amd64.
186s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
186s Unpacking libisl23:amd64 (0.27-1build1) ...
186s Selecting previously unselected package libmpc3:amd64.
186s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
186s Unpacking libmpc3:amd64 (1.3.1-2) ...
186s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
186s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
186s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
186s Selecting previously unselected package cpp-15.
186s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
186s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
186s Selecting previously unselected package cpp-x86-64-linux-gnu.
186s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
186s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
186s Selecting previously unselected package cpp.
186s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
186s Unpacking cpp (4:15.2.0-4ubuntu1) ...
186s Selecting previously unselected package libcc1-0:amd64.
186s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
186s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
186s Selecting previously unselected package libgomp1:amd64.
186s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
186s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
186s Selecting previously unselected package libitm1:amd64.
187s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package libasan8:amd64.
187s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package liblsan0:amd64.
187s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package libtsan2:amd64.
187s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package libubsan1:amd64.
187s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package libhwasan0:amd64.
187s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package libquadmath0:amd64.
187s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
187s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
187s Selecting previously unselected package libgcc-15-dev:amd64.
187s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
187s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
187s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
187s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
187s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
187s Selecting previously unselected package gcc-15.
187s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
187s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
187s Selecting previously unselected package gcc-x86-64-linux-gnu.
187s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
187s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
187s Selecting previously unselected package gcc.
187s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
187s Unpacking gcc (4:15.2.0-4ubuntu1) ...
187s Selecting previously unselected package libstdc++-15-dev:amd64.
187s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
187s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
187s Selecting previously unselected package g++-15-x86-64-linux-gnu.
187s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
187s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
187s Selecting previously unselected package g++-15.
187s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
187s Unpacking g++-15 (15.2.0-12ubuntu1) ...
187s Selecting previously unselected package g++-x86-64-linux-gnu.
187s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
187s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
187s Selecting previously unselected package g++.
187s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
187s Unpacking g++ (4:15.2.0-4ubuntu1) ...
187s Selecting previously unselected package build-essential.
187s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
187s Unpacking build-essential (12.12ubuntu2) ...
187s Selecting previously unselected package dctrl-tools.
187s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
187s Unpacking dctrl-tools (2.24-3build4) ...
187s Selecting previously unselected package fonts-dejavu-mono.
187s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
187s Unpacking fonts-dejavu-mono (2.37-8build1) ...
187s Selecting previously unselected package fonts-dejavu-core.
187s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
187s Unpacking fonts-dejavu-core (2.37-8build1) ...
187s Selecting previously unselected package fontconfig-config.
187s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
188s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
188s Selecting previously unselected package libfontconfig1:amd64.
188s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
188s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
188s Selecting previously unselected package fontconfig.
188s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
188s Unpacking fontconfig (2.17.1-3ubuntu1) ...
188s Selecting previously unselected package fonts-font-awesome.
188s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
188s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
188s Selecting previously unselected package fonts-glyphicons-halflings.
188s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
188s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
188s Selecting previously unselected package fonts-lmodern.
188s Preparing to unpack .../039-fonts-lmodern_2.005-1build1_all.deb ...
188s Unpacking fonts-lmodern (2.005-1build1) ...
188s Selecting previously unselected package fonts-mathjax.
188s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
188s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
188s Selecting previously unselected package libgfortran5:amd64.
188s Preparing to unpack .../041-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
188s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
188s Selecting previously unselected package libgfortran-15-dev:amd64.
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191s Preparing to unpack .../144-pkgconf_1.8.1-4build1_amd64.deb ...
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191s Selecting previously unselected package libtirpc-dev:amd64.
191s Preparing to unpack .../145-libtirpc-dev_1.3.6+ds-1_amd64.deb ...
191s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ...
191s Selecting previously unselected package r-base-dev.
191s Preparing to unpack .../146-r-base-dev_4.5.2-1ubuntu2_all.deb ...
191s Unpacking r-base-dev (4.5.2-1ubuntu2) ...
191s Selecting previously unselected package pkg-r-autopkgtest.
191s Preparing to unpack .../147-pkg-r-autopkgtest_20250812_all.deb ...
191s Unpacking pkg-r-autopkgtest (20250812) ...
191s Selecting previously unselected package r-bioc-biocgenerics.
191s Preparing to unpack .../148-r-bioc-biocgenerics_0.52.0-2_all.deb ...
191s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
191s Selecting previously unselected package r-bioc-biobase.
191s Preparing to unpack .../149-r-bioc-biobase_2.66.0-2_amd64.deb ...
191s Unpacking r-bioc-biobase (2.66.0-2) ...
191s Selecting previously unselected package r-bioc-s4vectors.
191s Preparing to unpack .../150-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ...
191s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
191s Selecting previously unselected package r-bioc-iranges.
191s Preparing to unpack .../151-r-bioc-iranges_2.40.1-3_amd64.deb ...
191s Unpacking r-bioc-iranges (2.40.1-3) ...
191s Selecting previously unselected package r-cran-dbi.
191s Preparing to unpack .../152-r-cran-dbi_1.2.3-1build1_all.deb ...
191s Unpacking r-cran-dbi (1.2.3-1build1) ...
191s Selecting previously unselected package r-cran-bit.
191s Preparing to unpack .../153-r-cran-bit_4.6.0+dfsg-1_amd64.deb ...
191s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
191s Selecting previously unselected package r-cran-bit64.
191s Preparing to unpack .../154-r-cran-bit64_4.6.0-1-4_amd64.deb ...
191s Unpacking r-cran-bit64 (4.6.0-1-4) ...
191s Selecting previously unselected package r-cran-rlang.
191s Preparing to unpack .../155-r-cran-rlang_1.1.5-3_amd64.deb ...
191s Unpacking r-cran-rlang (1.1.5-3) ...
191s Selecting previously unselected package r-cran-cli.
191s Preparing to unpack .../156-r-cran-cli_3.6.4-1_amd64.deb ...
191s Unpacking r-cran-cli (3.6.4-1) ...
191s Selecting previously unselected package r-cran-glue.
191s Preparing to unpack .../157-r-cran-glue_1.8.0-1_amd64.deb ...
191s Unpacking r-cran-glue (1.8.0-1) ...
191s Selecting previously unselected package r-cran-lifecycle.
191s Preparing to unpack .../158-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ...
191s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ...
191s Selecting previously unselected package r-cran-vctrs.
191s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ...
191s Unpacking r-cran-vctrs (0.6.5-1) ...
191s Selecting previously unselected package r-cran-blob.
192s Preparing to unpack .../160-r-cran-blob_1.3.0-1_all.deb ...
192s Unpacking r-cran-blob (1.3.0-1) ...
192s Selecting previously unselected package r-cran-fastmap.
192s Preparing to unpack .../161-r-cran-fastmap_1.2.0-1_amd64.deb ...
192s Unpacking r-cran-fastmap (1.2.0-1) ...
192s Selecting previously unselected package r-cran-cachem.
192s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_amd64.deb ...
192s Unpacking r-cran-cachem (1.1.0-1) ...
192s Selecting previously unselected package r-cran-memoise.
192s Preparing to unpack .../163-r-cran-memoise_2.0.1-1build1_all.deb ...
192s Unpacking r-cran-memoise (2.0.1-1build1) ...
192s Selecting previously unselected package r-cran-pkgconfig.
192s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build2_all.deb ...
192s Unpacking r-cran-pkgconfig (2.0.3-2build2) ...
192s Selecting previously unselected package r-cran-plogr.
192s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build2_all.deb ...
192s Unpacking r-cran-plogr (0.2.0-3build2) ...
192s Selecting previously unselected package r-cran-cpp11.
192s Preparing to unpack .../166-r-cran-cpp11_0.5.3-1_all.deb ...
192s Unpacking r-cran-cpp11 (0.5.3-1) ...
192s Selecting previously unselected package r-cran-rsqlite.
192s Preparing to unpack .../167-r-cran-rsqlite_2.3.9-1_amd64.deb ...
192s Unpacking r-cran-rsqlite (2.3.9-1) ...
192s Selecting previously unselected package r-cran-curl.
192s Preparing to unpack .../168-r-cran-curl_7.0.0+dfsg-1_amd64.deb ...
192s Unpacking r-cran-curl (7.0.0+dfsg-1) ...
192s Selecting previously unselected package r-cran-jsonlite.
192s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
192s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-mime.
192s Preparing to unpack .../170-r-cran-mime_0.12-2_amd64.deb ...
192s Unpacking r-cran-mime (0.12-2) ...
192s Selecting previously unselected package r-cran-sys.
192s Preparing to unpack .../171-r-cran-sys_3.4.3-1_amd64.deb ...
192s Unpacking r-cran-sys (3.4.3-1) ...
192s Selecting previously unselected package r-cran-askpass.
192s Preparing to unpack .../172-r-cran-askpass_1.2.1-1_amd64.deb ...
192s Unpacking r-cran-askpass (1.2.1-1) ...
192s Selecting previously unselected package r-cran-openssl.
192s Preparing to unpack .../173-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ...
192s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
192s Selecting previously unselected package r-cran-r6.
192s Preparing to unpack .../174-r-cran-r6_2.6.1-1_all.deb ...
192s Unpacking r-cran-r6 (2.6.1-1) ...
192s Selecting previously unselected package r-cran-httr.
192s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ...
192s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
192s Selecting previously unselected package r-cran-png.
192s Preparing to unpack .../176-r-cran-png_0.1-8-1build2_amd64.deb ...
192s Unpacking r-cran-png (0.1-8-1build2) ...
192s Selecting previously unselected package r-bioc-zlibbioc.
192s Preparing to unpack .../177-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
192s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
192s Selecting previously unselected package r-bioc-xvector.
192s Preparing to unpack .../178-r-bioc-xvector_0.46.0-2_amd64.deb ...
192s Unpacking r-bioc-xvector (0.46.0-2) ...
192s Selecting previously unselected package r-bioc-ucsc.utils.
192s Preparing to unpack .../179-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
192s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
192s Selecting previously unselected package r-bioc-genomeinfodbdata.
192s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
192s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
192s Selecting previously unselected package r-bioc-genomeinfodb.
192s Preparing to unpack .../181-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
192s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
192s Selecting previously unselected package r-cran-crayon.
192s Preparing to unpack .../182-r-cran-crayon_1.5.3-1_all.deb ...
192s Unpacking r-cran-crayon (1.5.3-1) ...
192s Selecting previously unselected package r-bioc-biostrings.
192s Preparing to unpack .../183-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ...
192s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
192s Selecting previously unselected package r-bioc-keggrest.
192s Preparing to unpack .../184-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ...
192s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ...
192s Selecting previously unselected package r-bioc-annotationdbi.
192s Preparing to unpack .../185-r-bioc-annotationdbi_1.68.0-2_all.deb ...
192s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
192s Selecting previously unselected package r-cran-xml.
192s Preparing to unpack .../186-r-cran-xml_3.99-0.20-1_amd64.deb ...
192s Unpacking r-cran-xml (3.99-0.20-1) ...
192s Selecting previously unselected package r-cran-xtable.
192s Preparing to unpack .../187-r-cran-xtable_1%3a1.8-4-2build1_all.deb ...
192s Unpacking r-cran-xtable (1:1.8-4-2build1) ...
192s Selecting previously unselected package r-bioc-annotate.
192s Preparing to unpack .../188-r-bioc-annotate_1.84.0+dfsg-2_all.deb ...
192s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ...
192s Selecting previously unselected package r-bioc-genomicranges.
192s Preparing to unpack .../189-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ...
192s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
192s Selecting previously unselected package r-cran-lazyeval.
192s Preparing to unpack .../190-r-cran-lazyeval_0.2.2-1build2_amd64.deb ...
192s Unpacking r-cran-lazyeval (0.2.2-1build2) ...
192s Selecting previously unselected package r-bioc-annotationfilter.
192s Preparing to unpack .../191-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ...
192s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ...
192s Selecting previously unselected package r-cran-generics.
192s Preparing to unpack .../192-r-cran-generics_0.1.4-1_all.deb ...
192s Unpacking r-cran-generics (0.1.4-1) ...
192s Selecting previously unselected package r-cran-magrittr.
192s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_amd64.deb ...
192s Unpacking r-cran-magrittr (2.0.3-1) ...
192s Selecting previously unselected package r-cran-utf8.
192s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_amd64.deb ...
192s Unpacking r-cran-utf8 (1.2.4-1) ...
192s Selecting previously unselected package r-cran-pillar.
192s Preparing to unpack .../195-r-cran-pillar_1.11.1+dfsg-1_all.deb ...
192s Unpacking r-cran-pillar (1.11.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-fansi.
192s Preparing to unpack .../196-r-cran-fansi_1.0.6-2_amd64.deb ...
192s Unpacking r-cran-fansi (1.0.6-2) ...
192s Selecting previously unselected package r-cran-tibble.
192s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
192s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
192s Selecting previously unselected package r-cran-withr.
192s Preparing to unpack .../198-r-cran-withr_3.0.2+dfsg-1_all.deb ...
192s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
192s Selecting previously unselected package r-cran-tidyselect.
192s Preparing to unpack .../199-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ...
192s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-dplyr.
192s Preparing to unpack .../200-r-cran-dplyr_1.1.4-4_amd64.deb ...
192s Unpacking r-cran-dplyr (1.1.4-4) ...
192s Selecting previously unselected package r-cran-purrr.
192s Preparing to unpack .../201-r-cran-purrr_1.0.4-1_amd64.deb ...
192s Unpacking r-cran-purrr (1.0.4-1) ...
192s Selecting previously unselected package r-cran-stringi.
192s Preparing to unpack .../202-r-cran-stringi_1.8.4-1build2_amd64.deb ...
192s Unpacking r-cran-stringi (1.8.4-1build2) ...
192s Selecting previously unselected package r-cran-stringr.
192s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ...
192s Unpacking r-cran-stringr (1.5.1-1) ...
192s Selecting previously unselected package r-cran-tidyr.
192s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_amd64.deb ...
192s Unpacking r-cran-tidyr (1.3.1-1) ...
192s Selecting previously unselected package r-cran-dbplyr.
192s Preparing to unpack .../205-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ...
192s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ...
192s Selecting previously unselected package r-cran-filelock.
193s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_amd64.deb ...
193s Unpacking r-cran-filelock (1.0.3-1) ...
193s Selecting previously unselected package r-bioc-biocfilecache.
193s Preparing to unpack .../207-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
193s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ...
193s Selecting previously unselected package r-cran-biocmanager.
193s Preparing to unpack .../208-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
193s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
193s Selecting previously unselected package r-bioc-biocversion.
193s Preparing to unpack .../209-r-bioc-biocversion_3.20.0-2_all.deb ...
193s Unpacking r-bioc-biocversion (3.20.0-2) ...
193s Selecting previously unselected package r-cran-rappdirs.
193s Preparing to unpack .../210-r-cran-rappdirs_0.3.3-1build1_amd64.deb ...
193s Unpacking r-cran-rappdirs (0.3.3-1build1) ...
193s Selecting previously unselected package r-cran-yaml.
193s Preparing to unpack .../211-r-cran-yaml_2.3.10-1_amd64.deb ...
193s Unpacking r-cran-yaml (2.3.10-1) ...
193s Selecting previously unselected package r-bioc-annotationhub.
193s Preparing to unpack .../212-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ...
193s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ...
193s Selecting previously unselected package r-bioc-biocio.
193s Preparing to unpack .../213-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
193s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
193s Selecting previously unselected package r-cran-formatr.
193s Preparing to unpack .../214-r-cran-formatr_1.14-2_all.deb ...
193s Unpacking r-cran-formatr (1.14-2) ...
193s Selecting previously unselected package r-cran-lambda.r.
193s Preparing to unpack .../215-r-cran-lambda.r_1.2.4-2build2_all.deb ...
193s Unpacking r-cran-lambda.r (1.2.4-2build2) ...
193s Selecting previously unselected package r-cran-futile.options.
193s Preparing to unpack .../216-r-cran-futile.options_1.0.1-3build2_all.deb ...
193s Unpacking r-cran-futile.options (1.0.1-3build2) ...
193s Selecting previously unselected package r-cran-futile.logger.
193s Preparing to unpack .../217-r-cran-futile.logger_1.4.3-4build2_all.deb ...
193s Unpacking r-cran-futile.logger (1.4.3-4build2) ...
193s Selecting previously unselected package r-cran-snow.
193s Preparing to unpack .../218-r-cran-snow_1%3a0.4.4-2build1_all.deb ...
193s Unpacking r-cran-snow (1:0.4.4-2build1) ...
193s Selecting previously unselected package r-cran-codetools.
193s Preparing to unpack .../219-r-cran-codetools_0.2-20-1build1_all.deb ...
193s Unpacking r-cran-codetools (0.2-20-1build1) ...
193s Selecting previously unselected package r-cran-bh.
193s Preparing to unpack .../220-r-cran-bh_1.84.0-1_all.deb ...
193s Unpacking r-cran-bh (1.84.0-1) ...
193s Selecting previously unselected package r-bioc-biocparallel.
193s Preparing to unpack .../221-r-bioc-biocparallel_1.40.0-2_amd64.deb ...
193s Unpacking r-bioc-biocparallel (1.40.0-2) ...
193s Selecting previously unselected package r-cran-base64enc.
193s Preparing to unpack .../222-r-cran-base64enc_0.1-3-3build1_amd64.deb ...
193s Unpacking r-cran-base64enc (0.1-3-3build1) ...
193s Selecting previously unselected package r-cran-digest.
193s Preparing to unpack .../223-r-cran-digest_0.6.39-1_amd64.deb ...
193s Unpacking r-cran-digest (0.6.39-1) ...
193s Selecting previously unselected package r-cran-htmltools.
193s Preparing to unpack .../224-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
193s Unpacking r-cran-htmltools (0.5.8.1-1) ...
193s Selecting previously unselected package r-cran-evaluate.
193s Preparing to unpack .../225-r-cran-evaluate_1.0.5-1_all.deb ...
193s Unpacking r-cran-evaluate (1.0.5-1) ...
193s Selecting previously unselected package r-cran-xfun.
193s Preparing to unpack .../226-r-cran-xfun_0.55+dfsg-1_amd64.deb ...
193s Unpacking r-cran-xfun (0.55+dfsg-1) ...
193s Selecting previously unselected package r-cran-highr.
193s Preparing to unpack .../227-r-cran-highr_0.11+dfsg-1_all.deb ...
193s Unpacking r-cran-highr (0.11+dfsg-1) ...
193s Selecting previously unselected package libjs-mathjax.
193s Preparing to unpack .../228-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ...
193s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ...
193s Selecting previously unselected package r-cran-knitr.
193s Preparing to unpack .../229-r-cran-knitr_1.51+dfsg-1_all.deb ...
193s Unpacking r-cran-knitr (1.51+dfsg-1) ...
193s Selecting previously unselected package r-cran-jquerylib.
193s Preparing to unpack .../230-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ...
193s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ...
193s Selecting previously unselected package r-cran-fs.
193s Preparing to unpack .../231-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
193s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
193s Selecting previously unselected package r-cran-sass.
193s Preparing to unpack .../232-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
193s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
193s Selecting previously unselected package r-cran-bslib.
193s Preparing to unpack .../233-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ...
193s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ...
193s Selecting previously unselected package r-cran-fontawesome.
193s Preparing to unpack .../234-r-cran-fontawesome_0.5.3-1_all.deb ...
193s Unpacking r-cran-fontawesome (0.5.3-1) ...
193s Selecting previously unselected package r-cran-tinytex.
193s Preparing to unpack .../235-r-cran-tinytex_0.58-1_all.deb ...
193s Unpacking r-cran-tinytex (0.58-1) ...
193s Selecting previously unselected package libjs-modernizr.
193s Preparing to unpack .../236-libjs-modernizr_3.13.0-0.1build1_all.deb ...
193s Unpacking libjs-modernizr (3.13.0-0.1build1) ...
193s Selecting previously unselected package r-cran-littler.
193s Preparing to unpack .../237-r-cran-littler_0.3.22-1_amd64.deb ...
193s Unpacking r-cran-littler (0.3.22-1) ...
193s Selecting previously unselected package r-cran-pkgkitten.
193s Preparing to unpack .../238-r-cran-pkgkitten_0.2.4-1_all.deb ...
193s Unpacking r-cran-pkgkitten (0.2.4-1) ...
193s Selecting previously unselected package r-cran-rcpp.
193s Preparing to unpack .../239-r-cran-rcpp_1.1.0-1_amd64.deb ...
193s Unpacking r-cran-rcpp (1.1.0-1) ...
193s Selecting previously unselected package r-cran-later.
193s Preparing to unpack .../240-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
193s Unpacking r-cran-later (1.4.1+dfsg-1) ...
193s Selecting previously unselected package r-cran-promises.
193s Preparing to unpack .../241-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
193s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
193s Selecting previously unselected package r-cran-httpuv.
193s Preparing to unpack .../242-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
193s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
193s Selecting previously unselected package r-cran-sourcetools.
193s Preparing to unpack .../243-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
193s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
194s Selecting previously unselected package r-cran-commonmark.
194s Preparing to unpack .../244-r-cran-commonmark_1.9.5-1_amd64.deb ...
194s Unpacking r-cran-commonmark (1.9.5-1) ...
194s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
194s Preparing to unpack .../245-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
194s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
194s Selecting previously unselected package r-cran-shiny.
194s Preparing to unpack .../246-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
194s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
194s Selecting previously unselected package r-cran-rmarkdown.
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196s Selecting previously unselected package r-bioc-biocstyle.
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196s Selecting previously unselected package r-cran-hms.
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196s Selecting previously unselected package r-cran-prettyunits.
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196s Selecting previously unselected package r-bioc-biomart.
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196s Selecting previously unselected package r-bioc-matrixgenerics.
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196s Selecting previously unselected package r-cran-abind.
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196s Selecting previously unselected package r-bioc-s4arrays.
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201s Setting up r-cran-filelock (1.0.3-1) ...
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201s Setting up r-cran-yaml (2.3.10-1) ...
201s Setting up r-cran-lambda.r (1.2.4-2build2) ...
201s Setting up r-bioc-protgenerics (1.38.0-2) ...
201s Setting up r-cran-evaluate (1.0.5-1) ...
201s Setting up r-cran-dbi (1.2.3-1build1) ...
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201s Setting up r-cran-prettyunits (1.2.0-1) ...
201s Setting up r-cran-fansi (1.0.6-2) ...
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201s Setting up r-cran-cli (3.6.4-1) ...
201s Setting up gfortran (4:15.2.0-4ubuntu1) ...
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201s Setting up r-cran-bitops (1.0-9-1) ...
201s Setting up r-bioc-biocversion (3.20.0-2) ...
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201s Setting up r-cran-bit64 (4.6.0-1-4) ...
201s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
201s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
201s Setting up r-cran-askpass (1.2.1-1) ...
201s Setting up r-cran-fastmap (1.2.0-1) ...
201s Setting up r-cran-png (0.1-8-1build2) ...
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201s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
201s Setting up r-cran-pkgconfig (2.0.3-2build2) ...
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201s Setting up r-cran-cpp11 (0.5.3-1) ...
201s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
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201s Setting up g++ (4:15.2.0-4ubuntu1) ...
201s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
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201s Setting up r-cran-sass (0.4.9+dfsg-1) ...
201s Setting up build-essential (12.12ubuntu2) ...
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201s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
201s Setting up r-cran-restfulr (0.0.15-1) ...
201s Setting up r-cran-vctrs (0.6.5-1) ...
201s Setting up r-cran-pillar (1.11.1+dfsg-1) ...
201s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
201s Setting up r-base-dev (4.5.2-1ubuntu2) ...
201s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
201s Setting up r-cran-stringr (1.5.1-1) ...
201s Setting up r-bioc-biocparallel (1.40.0-2) ...
201s Setting up r-cran-callr (3.7.6-1) ...
201s Setting up r-bioc-edger (4.4.2+dfsg-1) ...
201s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
201s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
201s Setting up r-cran-desc (1.4.3-1) ...
201s Setting up r-cran-xml2 (1.4.1-1) ...
201s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
201s Setting up r-cran-fontawesome (0.5.3-1) ...
201s Setting up r-cran-survival (3.8-6-1) ...
201s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
201s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
201s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
201s Setting up texlive-bibtex-extra (2025.20260124-1) ...
201s Setting up r-cran-httr2 (1.1.1-2) ...
201s Setting up r-cran-httr (1.4.7+dfsg-1) ...
201s Setting up r-cran-hms (1.1.4-1) ...
201s Setting up r-cran-memoise (2.0.1-1build1) ...
201s Setting up r-cran-covr (3.6.4+dfsg-1) ...
201s Setting up r-cran-promises (1.3.2+dfsg-1) ...
201s Setting up r-cran-purrr (1.0.4-1) ...
201s Setting up r-cran-blob (1.3.0-1) ...
201s Setting up pkg-r-autopkgtest (20250812) ...
201s Setting up r-bioc-xvector (0.46.0-2) ...
201s Setting up r-cran-pkgbuild (1.4.8-1) ...
201s Setting up r-cran-dplyr (1.1.4-4) ...
201s Setting up r-cran-rsqlite (2.3.9-1) ...
201s Setting up r-cran-progress (1.2.3-1) ...
201s Setting up r-cran-pkgload (1.4.1-1) ...
201s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
201s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
201s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
201s Setting up r-cran-testthat (3.2.3-1) ...
201s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
201s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
201s Setting up r-cran-tidyr (1.3.1-1) ...
201s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ...
201s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
201s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
201s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
201s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
201s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ...
201s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
201s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
201s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
201s Setting up r-cran-bookdown (0.42+dfsg-1) ...
201s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
201s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
201s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ...
201s Setting up r-bioc-annotationdbi (1.68.0-2) ...
201s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ...
201s Setting up r-bioc-annotate (1.84.0+dfsg-2) ...
201s Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
201s Setting up r-bioc-saturn (1.14.0+dfsg-2) ...
201s Setting up r-bioc-genefilter (1.88.0-2) ...
201s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
201s Setting up r-bioc-genomicalignments (1.42.0-2) ...
201s Setting up r-bioc-geneplotter (1.84.0+dfsg-2) ...
201s Setting up r-bioc-rtracklayer (1.66.0-3) ...
201s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
201s Setting up r-bioc-dexseq (1.52.0+dfsg-2) ...
201s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ...
201s Processing triggers for man-db (2.13.1-1build1) ...
202s Processing triggers for install-info (7.2-5) ...
202s Processing triggers for libc-bin (2.42-2ubuntu4) ...
202s Processing triggers for tex-common (6.20) ...
203s Running updmap-sys. This may take some time... done.
203s Running mktexlsr /var/lib/texmf ... done.
203s Building format(s) --all.
217s 	This may take some time... done.
217s autopkgtest [04:21:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
217s autopkgtest [04:21:33]: test pkg-r-autopkgtest: [-----------------------
217s Test: Try to load the R library satuRn
218s 
218s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
218s Copyright (C) 2025 The R Foundation for Statistical Computing
218s Platform: x86_64-pc-linux-gnu
218s 
218s R is free software and comes with ABSOLUTELY NO WARRANTY.
218s You are welcome to redistribute it under certain conditions.
218s Type 'license()' or 'licence()' for distribution details.
218s 
218s R is a collaborative project with many contributors.
218s Type 'contributors()' for more information and
218s 'citation()' on how to cite R or R packages in publications.
218s 
218s Type 'demo()' for some demos, 'help()' for on-line help, or
218s 'help.start()' for an HTML browser interface to help.
218s Type 'q()' to quit R.
218s 
218s > library('satuRn')
222s > 
222s Test: Run tests for satuRn
222s Start: testthat.R
222s 
222s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
222s Copyright (C) 2025 The R Foundation for Statistical Computing
222s Platform: x86_64-pc-linux-gnu
222s 
222s R is free software and comes with ABSOLUTELY NO WARRANTY.
222s You are welcome to redistribute it under certain conditions.
222s Type 'license()' or 'licence()' for distribution details.
222s 
222s R is a collaborative project with many contributors.
222s Type 'contributors()' for more information and
222s 'citation()' on how to cite R or R packages in publications.
222s 
222s Type 'demo()' for some demos, 'help()' for on-line help, or
222s 'help.start()' for an HTML browser interface to help.
222s Type 'q()' to quit R.
222s 
222s > library(testthat)
222s > library(satuRn)
226s > library(SummarizedExperiment)
226s Loading required package: MatrixGenerics
226s Loading required package: matrixStats
226s 
226s Attaching package: ‘MatrixGenerics’
226s 
226s The following objects are masked from ‘package:matrixStats’:
226s 
226s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
226s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
226s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
226s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
226s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
226s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
226s     colWeightedMeans, colWeightedMedians, colWeightedSds,
226s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
226s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
226s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
226s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
226s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
226s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
226s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
226s     rowWeightedSds, rowWeightedVars
226s 
226s Loading required package: GenomicRanges
226s Loading required package: stats4
226s Loading required package: BiocGenerics
226s 
226s Attaching package: ‘BiocGenerics’
226s 
226s The following objects are masked from ‘package:stats’:
226s 
226s     IQR, mad, sd, var, xtabs
226s 
226s The following objects are masked from ‘package:base’:
226s 
226s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
226s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
226s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
226s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
226s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
226s     table, tapply, union, unique, unsplit, which.max, which.min
226s 
226s Loading required package: S4Vectors
226s 
226s Attaching package: ‘S4Vectors’
226s 
226s The following object is masked from ‘package:utils’:
226s 
226s     findMatches
226s 
226s The following objects are masked from ‘package:base’:
226s 
226s     expand.grid, I, unname
226s 
226s Loading required package: IRanges
226s Loading required package: GenomeInfoDb
226s Loading required package: Biobase
226s Welcome to Bioconductor
226s 
226s     Vignettes contain introductory material; view with
226s     'browseVignettes()'. To cite Bioconductor, see
226s     'citation("Biobase")', and for packages 'citation("pkgname")'.
226s 
226s 
226s Attaching package: ‘Biobase’
226s 
226s The following object is masked from ‘package:MatrixGenerics’:
226s 
226s     rowMedians
226s 
226s The following objects are masked from ‘package:matrixStats’:
226s 
226s     anyMissing, rowMedians
226s 
226s > library(DelayedArray)
226s Loading required package: Matrix
226s 
226s Attaching package: ‘Matrix’
226s 
226s The following object is masked from ‘package:S4Vectors’:
226s 
226s     expand
226s 
226s Loading required package: S4Arrays
226s Loading required package: abind
226s 
226s Attaching package: ‘S4Arrays’
226s 
226s The following object is masked from ‘package:abind’:
226s 
226s     abind
226s 
226s The following object is masked from ‘package:base’:
226s 
226s     rowsum
226s 
226s Loading required package: SparseArray
226s 
226s Attaching package: ‘DelayedArray’
226s 
226s > 
226s > test_check("satuRn")
226s The following objects are masked from ‘package:base’:
226s 
226s     apply, scale, sweep
226s 
234s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
234s > 
235s autopkgtest [04:21:51]: test pkg-r-autopkgtest: -----------------------]
235s autopkgtest [04:21:51]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
235s pkg-r-autopkgtest    PASS
235s autopkgtest [04:21:51]: @@@@@@@@@@@@@@@@@@@@ summary
235s pkg-r-autopkgtest    PASS