0s autopkgtest [04:16:29]: starting date and time: 2026-02-10 04:16:29+0000
  0s autopkgtest [04:16:29]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:16:29]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f5ncpj3m/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-qvalue --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-7.secgroup --name adt-resolute-amd64-r-bioc-qvalue-20260210-041629-juju-7f2275-prod-proposed-migration-environment-2-cab53756-80d8-433c-873f-e00b363746d9 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-bioc-qvalue-20260210-041629-juju-7f2275-prod-proposed-migration-environment-2-cab53756-80d8-433c-873f-e00b363746d9 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 70s autopkgtest [04:17:39]: testbed dpkg architecture: amd64
 70s autopkgtest [04:17:39]: testbed apt version: 3.1.14
 71s autopkgtest [04:17:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 71s autopkgtest [04:17:40]: testbed release detected to be: None
 72s autopkgtest [04:17:41]: updating testbed package index (apt update)
 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 72s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 72s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 72s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 72s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 73s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 73s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 73s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 73s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 73s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 73s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 73s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 73s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 73s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 74s Fetched 5189 kB in 1s (4915 kB/s)
 74s Reading package lists...
 75s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 76s Reading package lists...
 76s Reading package lists...
 76s Building dependency tree...
 76s Reading state information...
 76s Calculating upgrade...
 76s The following package was automatically installed and is no longer required:
 76s   libpython3.13
 76s Use 'sudo apt autoremove' to remove it.
 76s The following NEW packages will be installed:
 76s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 76s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 76s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 76s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 76s The following packages will be upgraded:
 76s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 76s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 76s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 76s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 76s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 76s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 76s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 76s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 76s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 76s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 76s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 76s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 76s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 76s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 76s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 76s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 76s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 76s Need to get 237 MB of archives.
 76s After this operation, 339 MB of additional disk space will be used.
 76s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 76s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 76s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 76s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 76s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 76s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 76s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 76s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 77s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 77s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 77s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 77s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 77s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 77s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 77s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 77s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 77s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 77s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 77s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 77s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 77s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 77s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 77s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 77s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 77s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 77s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 77s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 77s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 77s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 77s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 77s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 77s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 77s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 77s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 77s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 77s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 77s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 77s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 77s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 77s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 77s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 77s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 77s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 77s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 77s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 77s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 77s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 77s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 77s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 77s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 77s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 77s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 77s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 77s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 77s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 77s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 77s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 77s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 77s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 77s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 77s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 77s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 77s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 77s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 77s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 77s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 77s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 77s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 77s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 77s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 77s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 77s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 77s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 77s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 77s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 77s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 77s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 81s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 82s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 82s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 82s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 82s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 82s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 82s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 82s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 82s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 82s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 82s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 82s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 82s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 83s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 83s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 83s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 83s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 83s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 83s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 83s Fetched 237 MB in 6s (36.7 MB/s)
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 83s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 83s Setting up debianutils (5.23.2build1) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 83s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 83s Setting up dash (0.5.12-12ubuntu3) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 83s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 83s Setting up findutils (4.10.0-3build2) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 83s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 83s Setting up sed (4.9-2build3) ...
 83s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 83s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 83s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 83s Setting up tar (1.35+dfsg-3.1build2) ...
 83s (Reading database ... 
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 92s Setting up libjansson4:amd64 (2.14-2build4) ...
 92s Setting up libglib2.0-data (2.87.2-2) ...
 92s Setting up pollinate (4.33-4ubuntu5) ...
103s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
103s Setting up libwrap0:amd64 (7.6.q-36build2) ...
103s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
104s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
104s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
104s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
104s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
104s Setting up patch (2.8-2build1) ...
104s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
104s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
104s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
104s Setting up lsof (4.99.4+dfsg-2build2) ...
104s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
104s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
104s Setting up dracut-install (109-11ubuntu1) ...
104s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
104s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
104s Setting up pnp.ids (0.394-1build1) ...
104s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
104s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
104s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
104s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
104s Setting up mawk (1.3.4.20260129-1) ...
104s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
104s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
104s Setting up linux-image-virtual (6.19.0-3.3) ...
104s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
104s Setting up libbsd0:amd64 (0.12.2-2build2) ...
104s Setting up libdrm-common (2.4.131-1) ...
104s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
104s Setting up dbus-bin (1.16.2-2ubuntu3) ...
104s Setting up libonig5:amd64 (6.9.10-1build1) ...
104s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
104s Setting up ethtool (1:6.15-3build1) ...
104s Setting up python3-referencing (0.36.2-1ubuntu2) ...
104s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
104s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
104s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
104s Setting up tcpdump (4.99.5-2ubuntu3) ...
104s Setting up linux-image-generic (6.19.0-3.3) ...
104s Setting up wget (1.25.0-2ubuntu4) ...
104s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
104s Setting up iptables (1.8.11-2ubuntu3) ...
104s Setting up iproute2 (6.18.0-1ubuntu1) ...
104s Setting up linux-headers-generic (6.19.0-3.3) ...
104s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
104s Setting up hwdata (0.394-1build1) ...
104s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
104s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
104s No schema files found: doing nothing.
104s Setting up dbus (1.16.2-2ubuntu3) ...
104s A reboot is required to replace the running dbus-daemon.
104s Please reboot the system when convenient.
105s Setting up shared-mime-info (2.4-5build3) ...
105s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
105s Setting up pciutils (1:3.14.0-1build2) ...
105s Setting up python3-markdown-it (3.0.0-3build1) ...
105s Setting up libdrm2:amd64 (2.4.131-1) ...
105s Setting up libpython3.14:amd64 (3.14.2-1) ...
105s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
105s Setting up linux-tools-common (6.19.0-3.3) ...
105s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
105s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
105s Setting up apt (3.1.15) ...
106s Setting up linux-headers-virtual (6.19.0-3.3) ...
106s Setting up linux-generic (6.19.0-3.3) ...
106s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
106s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
106s Setting up ubuntu-standard (1.564) ...
106s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
106s Setting up linux-virtual (6.19.0-3.3) ...
106s Setting up linux-perf (6.19.0-3.3) ...
106s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
106s Processing triggers for debianutils (5.23.2build1) ...
106s Processing triggers for install-info (7.2-5) ...
106s Processing triggers for initramfs-tools (0.150ubuntu7) ...
106s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
111s Processing triggers for libc-bin (2.42-2ubuntu4) ...
111s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
111s /etc/kernel/postinst.d/initramfs-tools:
111s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
115s /etc/kernel/postinst.d/zz-update-grub:
115s Sourcing file `/etc/default/grub'
115s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
115s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
115s Generating grub configuration file ...
115s Found linux image: /boot/vmlinuz-6.19.0-3-generic
115s Found initrd image: /boot/initrd.img-6.19.0-3-generic
115s Found linux image: /boot/vmlinuz-6.18.0-9-generic
115s Found initrd image: /boot/initrd.img-6.18.0-9-generic
115s Warning: os-prober will not be executed to detect other bootable partitions.
115s Systems on them will not be added to the GRUB boot configuration.
115s Check GRUB_DISABLE_OS_PROBER documentation entry.
115s Adding boot menu entry for UEFI Firmware Settings ...
115s done
115s autopkgtest [04:18:24]: upgrading testbed (apt dist-upgrade and autopurge)
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s Calculating upgrade...
116s The following package was automatically installed and is no longer required:
116s   libpython3.13
116s Use 'sudo apt autoremove' to remove it.
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s Reading package lists...
117s Building dependency tree...
117s Reading state information...
117s Solving dependencies...
117s The following packages will be REMOVED:
117s   libpython3.13*
117s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
117s After this operation, 7599 kB disk space will be freed.
117s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
117s Removing libpython3.13:amd64 (3.13.11-1) ...
117s Processing triggers for libc-bin (2.42-2ubuntu4) ...
117s autopkgtest [04:18:26]: rebooting testbed after setup commands that affected boot
146s autopkgtest [04:18:55]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
149s autopkgtest [04:18:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qvalue
150s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-qvalue 2.38.0-2 (dsc) [2121 B]
150s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-qvalue 2.38.0-2 (tar) [2775 kB]
150s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-qvalue 2.38.0-2 (diff) [5720 B]
150s gpgv: Signature made Sat Jan 11 17:08:48 2025 UTC
150s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
150s gpgv:                issuer "crusoe@debian.org"
150s gpgv: Can't check signature: No public key
150s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qvalue_2.38.0-2.dsc: no acceptable signature found
150s autopkgtest [04:18:59]: testing package r-bioc-qvalue version 2.38.0-2
151s autopkgtest [04:19:00]: build not needed
156s autopkgtest [04:19:05]: test pkg-r-autopkgtest: preparing testbed
156s Reading package lists...
156s Building dependency tree...
156s Reading state information...
156s Solving dependencies...
156s The following NEW packages will be installed:
156s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
156s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
156s   fonts-glyphicons-halflings fonts-mathjax g++ g++-15 g++-15-x86-64-linux-gnu
156s   g++-x86-64-linux-gnu gcc gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu
156s   gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu
156s   icu-devtools libasan8 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev
156s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0
156s   libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1
156s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
156s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
156s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
156s   libjs-mathjax liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
156s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
156s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
156s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
156s   libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libtcl8.6 libthai-data
156s   libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7
156s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev
156s   linux-libc-dev node-normalize.css pkg-r-autopkgtest pkgconf pkgconf-bin
156s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-qvalue r-cran-cli
156s   r-cran-evaluate r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gtable
156s   r-cran-highr r-cran-isoband r-cran-knitr r-cran-labeling r-cran-lifecycle
156s   r-cran-littler r-cran-magrittr r-cran-pkgkitten r-cran-plyr r-cran-r6
156s   r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-s7
156s   r-cran-scales r-cran-stringi r-cran-stringr r-cran-vctrs r-cran-viridislite
156s   r-cran-withr r-cran-xfun r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils
156s   zip zlib1g-dev
156s 0 upgraded, 144 newly installed, 0 to remove and 0 not upgraded.
156s Need to get 186 MB of archives.
156s After this operation, 578 MB of additional disk space will be used.
156s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
156s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
157s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
157s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
157s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
157s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
157s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
157s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
157s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
157s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
157s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
157s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
157s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
157s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
157s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
157s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
157s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
157s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
157s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
157s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
157s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
157s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
158s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
158s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
158s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
158s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
158s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
158s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
158s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
158s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
158s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
158s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
158s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
158s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
158s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
158s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
158s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
158s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
158s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
159s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
159s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
159s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
159s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
159s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
159s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
159s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
159s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
159s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
159s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
159s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
159s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
159s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
159s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
159s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
159s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
159s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
159s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
159s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
159s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
159s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
159s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
159s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
160s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
160s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
160s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
160s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
160s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
160s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
160s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
160s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
160s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
160s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
160s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
160s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
160s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
160s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
160s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
160s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
160s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
160s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
160s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
160s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
160s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
160s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
160s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
160s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
160s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
160s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
160s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
160s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
160s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
160s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
160s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
160s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
160s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
160s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
160s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
160s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
160s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
160s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
160s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
160s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
160s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
160s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
160s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
160s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
161s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
161s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
161s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
161s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
161s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
161s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
161s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
161s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
161s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
161s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
161s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
161s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
161s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
161s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
161s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
161s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
161s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
161s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
161s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
162s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
162s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
162s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
162s Get:129 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
162s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
162s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
162s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
162s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
162s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
162s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
162s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
162s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
162s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-qvalue all 2.38.0-2 [2811 kB]
162s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
162s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
162s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
162s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
162s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
162s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
163s Preconfiguring packages ...
163s Fetched 186 MB in 6s (30.2 MB/s)
163s Selecting previously unselected package libc-dev-bin.
163s (Reading database ... 
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(Reading database ... 125269 files and directories currently installed.)
163s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
163s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
163s Selecting previously unselected package linux-libc-dev:amd64.
163s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
163s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
163s Selecting previously unselected package libcrypt-dev:amd64.
163s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
163s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
163s Selecting previously unselected package rpcsvc-proto.
163s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
163s Unpacking rpcsvc-proto (1.4.3-1build1) ...
163s Selecting previously unselected package libc6-dev:amd64.
163s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
163s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
163s Selecting previously unselected package libisl23:amd64.
163s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
163s Unpacking libisl23:amd64 (0.27-1build1) ...
163s Selecting previously unselected package libmpc3:amd64.
163s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
163s Unpacking libmpc3:amd64 (1.3.1-2) ...
163s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
163s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
163s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
163s Selecting previously unselected package cpp-15.
163s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
163s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
163s Selecting previously unselected package cpp-x86-64-linux-gnu.
163s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
163s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
163s Selecting previously unselected package cpp.
163s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
163s Unpacking cpp (4:15.2.0-4ubuntu1) ...
163s Selecting previously unselected package libcc1-0:amd64.
163s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libgomp1:amd64.
163s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libitm1:amd64.
163s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libasan8:amd64.
163s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package liblsan0:amd64.
163s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libtsan2:amd64.
163s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libubsan1:amd64.
163s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libhwasan0:amd64.
163s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libquadmath0:amd64.
163s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
163s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
163s Selecting previously unselected package libgcc-15-dev:amd64.
163s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
163s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
164s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gcc-15.
164s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gcc-x86-64-linux-gnu.
164s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package gcc.
164s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking gcc (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package libstdc++-15-dev:amd64.
164s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package g++-15-x86-64-linux-gnu.
164s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package g++-15.
164s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking g++-15 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package g++-x86-64-linux-gnu.
164s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package g++.
164s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
164s Unpacking g++ (4:15.2.0-4ubuntu1) ...
164s Selecting previously unselected package build-essential.
164s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
164s Unpacking build-essential (12.12ubuntu2) ...
164s Selecting previously unselected package dctrl-tools.
164s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
164s Unpacking dctrl-tools (2.24-3build4) ...
164s Selecting previously unselected package fonts-dejavu-mono.
164s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
164s Unpacking fonts-dejavu-mono (2.37-8build1) ...
164s Selecting previously unselected package fonts-dejavu-core.
164s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
164s Unpacking fonts-dejavu-core (2.37-8build1) ...
164s Selecting previously unselected package fontconfig-config.
164s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
164s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
164s Selecting previously unselected package libfontconfig1:amd64.
164s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
164s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
164s Selecting previously unselected package fontconfig.
164s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
164s Unpacking fontconfig (2.17.1-3ubuntu1) ...
164s Selecting previously unselected package fonts-glyphicons-halflings.
164s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
164s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
164s Selecting previously unselected package fonts-mathjax.
164s Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
164s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
164s Selecting previously unselected package libgfortran5:amd64.
164s Preparing to unpack .../039-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
164s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
164s Selecting previously unselected package libgfortran-15-dev:amd64.
164s Preparing to unpack .../040-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
164s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
164s Preparing to unpack .../041-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
164s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
165s Selecting previously unselected package gfortran-15.
165s Preparing to unpack .../042-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
165s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
165s Selecting previously unselected package gfortran-x86-64-linux-gnu.
165s Preparing to unpack .../043-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
165s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
165s Selecting previously unselected package gfortran.
165s Preparing to unpack .../044-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
165s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
165s Selecting previously unselected package icu-devtools.
165s Preparing to unpack .../045-icu-devtools_78.2-1ubuntu1_amd64.deb ...
165s Unpacking icu-devtools (78.2-1ubuntu1) ...
165s Selecting previously unselected package libblas3:amd64.
165s Preparing to unpack .../046-libblas3_3.12.1-7ubuntu1_amd64.deb ...
165s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
165s Selecting previously unselected package libblas-dev:amd64.
165s Preparing to unpack .../047-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
165s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
165s Selecting previously unselected package libbz2-dev:amd64.
165s Preparing to unpack .../048-libbz2-dev_1.0.8-6build2_amd64.deb ...
165s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
165s Selecting previously unselected package libpixman-1-0:amd64.
165s Preparing to unpack .../049-libpixman-1-0_0.46.4-1_amd64.deb ...
165s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
165s Selecting previously unselected package libxcb-render0:amd64.
165s Preparing to unpack .../050-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
165s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
165s Selecting previously unselected package libxcb-shm0:amd64.
165s Preparing to unpack .../051-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
165s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
165s Selecting previously unselected package libxrender1:amd64.
165s Preparing to unpack .../052-libxrender1_1%3a0.9.12-1_amd64.deb ...
165s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
165s Selecting previously unselected package libcairo2:amd64.
165s Preparing to unpack .../053-libcairo2_1.18.4-3_amd64.deb ...
165s Unpacking libcairo2:amd64 (1.18.4-3) ...
165s Selecting previously unselected package libdatrie1:amd64.
165s Preparing to unpack .../054-libdatrie1_0.2.14-1_amd64.deb ...
165s Unpacking libdatrie1:amd64 (0.2.14-1) ...
165s Selecting previously unselected package libdeflate0:amd64.
165s Preparing to unpack .../055-libdeflate0_1.23-2build1_amd64.deb ...
165s Unpacking libdeflate0:amd64 (1.23-2build1) ...
165s Selecting previously unselected package libdeflate-dev:amd64.
165s Preparing to unpack .../056-libdeflate-dev_1.23-2build1_amd64.deb ...
165s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
165s Selecting previously unselected package libgraphite2-3:amd64.
165s Preparing to unpack .../057-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
165s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
165s Selecting previously unselected package libharfbuzz0b:amd64.
165s Preparing to unpack .../058-libharfbuzz0b_12.3.2-1_amd64.deb ...
165s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
165s Selecting previously unselected package x11-common.
165s Preparing to unpack .../059-x11-common_1%3a7.7+24ubuntu1_all.deb ...
165s Unpacking x11-common (1:7.7+24ubuntu1) ...
165s Selecting previously unselected package libice6:amd64.
165s Preparing to unpack .../060-libice6_2%3a1.1.1-1build1_amd64.deb ...
165s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
165s Selecting previously unselected package libicu-dev:amd64.
165s Preparing to unpack .../061-libicu-dev_78.2-1ubuntu1_amd64.deb ...
165s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
165s Selecting previously unselected package libjpeg-turbo8:amd64.
165s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
165s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
165s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
165s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ...
165s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
165s Selecting previously unselected package libjpeg8:amd64.
165s Preparing to unpack .../064-libjpeg8_8c-2ubuntu12_amd64.deb ...
165s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ...
165s Selecting previously unselected package libjpeg8-dev:amd64.
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168s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
168s Setting up libthai0:amd64 (0.1.30-1) ...
168s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
168s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
168s Setting up cpp-15 (15.2.0-12ubuntu1) ...
168s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ...
168s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ...
168s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
168s Setting up libsm6:amd64 (2:1.2.6-1build1) ...
168s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ...
168s Setting up libbz2-dev:amd64 (1.0.8-6build2) ...
168s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
168s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
168s Setting up fontconfig (2.17.1-3ubuntu1) ...
170s Regenerating fonts cache... done.
170s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
170s Setting up libxft2:amd64 (2.3.6-1build2) ...
170s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
170s Setting up libpcre2-dev:amd64 (10.46-1) ...
170s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Setting up libtk8.6:amd64 (8.6.17-1) ...
170s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
170s Setting up libreadline-dev:amd64 (8.3-3) ...
170s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Setting up libcairo2:amd64 (1.18.4-3) ...
170s Setting up gcc-15 (15.2.0-12ubuntu1) ...
170s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
170s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
170s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
170s Setting up cpp (4:15.2.0-4ubuntu1) ...
170s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
170s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ...
170s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
170s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
170s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
170s Setting up libpng-dev:amd64 (1.6.54-1) ...
170s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ...
170s Setting up gcc (4:15.2.0-4ubuntu1) ...
170s Setting up r-base-core (4.5.2-1ubuntu2) ...
170s Creating config file /etc/R/Renviron with new version
170s Setting up r-cran-labeling (0.4.3-1) ...
170s Setting up r-cran-farver (2.1.2-1) ...
170s Setting up r-cran-viridislite (0.4.3-1) ...
170s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
170s Setting up r-cran-r6 (2.6.1-1) ...
170s Setting up r-cran-pkgkitten (0.2.4-1) ...
170s Setting up g++-15 (15.2.0-12ubuntu1) ...
170s Setting up r-cran-magrittr (2.0.3-1) ...
170s Setting up r-cran-littler (0.3.22-1) ...
170s Setting up r-cran-rcpp (1.1.0-1) ...
170s Setting up r-bioc-biocgenerics (0.52.0-2) ...
170s Setting up r-cran-rlang (1.1.5-3) ...
170s Setting up r-cran-xfun (0.55+dfsg-1) ...
170s Setting up r-cran-withr (3.0.2+dfsg-1) ...
170s Setting up r-cran-yaml (2.3.10-1) ...
170s Setting up r-cran-evaluate (1.0.5-1) ...
170s Setting up r-cran-highr (0.11+dfsg-1) ...
170s Setting up r-cran-glue (1.8.0-1) ...
170s Setting up r-cran-cli (3.6.4-1) ...
170s Setting up gfortran (4:15.2.0-4ubuntu1) ...
170s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
170s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
170s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
170s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
170s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
170s Setting up r-cran-stringi (1.8.4-1build2) ...
170s Setting up r-cran-s7 (0.2.0-1) ...
170s Setting up r-cran-plyr (1.8.9-1) ...
170s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
170s Setting up r-cran-isoband (0.2.7-1) ...
170s Setting up r-cran-scales (1.4.0-1) ...
170s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
170s Setting up r-cran-knitr (1.51+dfsg-1) ...
170s Setting up g++ (4:15.2.0-4ubuntu1) ...
170s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
170s Setting up build-essential (12.12ubuntu2) ...
170s Setting up r-cran-vctrs (0.6.5-1) ...
170s Setting up r-base-dev (4.5.2-1ubuntu2) ...
170s Setting up r-cran-stringr (1.5.1-1) ...
170s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
170s Setting up r-cran-reshape2 (1.4.4-2build2) ...
170s Setting up pkg-r-autopkgtest (20250812) ...
170s Setting up r-bioc-qvalue (2.38.0-2) ...
170s Processing triggers for libc-bin (2.42-2ubuntu4) ...
170s Processing triggers for man-db (2.13.1-1build1) ...
171s Processing triggers for install-info (7.2-5) ...
172s autopkgtest [04:19:21]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
172s autopkgtest [04:19:21]: test pkg-r-autopkgtest: [-----------------------
172s Test: Try to load the R library qvalue
172s 
172s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
172s Copyright (C) 2025 The R Foundation for Statistical Computing
172s Platform: x86_64-pc-linux-gnu
172s 
172s R is free software and comes with ABSOLUTELY NO WARRANTY.
172s You are welcome to redistribute it under certain conditions.
172s Type 'license()' or 'licence()' for distribution details.
172s 
172s R is a collaborative project with many contributors.
172s Type 'contributors()' for more information and
172s 'citation()' on how to cite R or R packages in publications.
172s 
172s Type 'demo()' for some demos, 'help()' for on-line help, or
172s 'help.start()' for an HTML browser interface to help.
172s Type 'q()' to quit R.
172s 
172s > library('qvalue')
172s > 
172s find: ‘tests’: No such file or directory
173s autopkgtest [04:19:22]: test pkg-r-autopkgtest: -----------------------]
173s autopkgtest [04:19:22]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
173s pkg-r-autopkgtest    PASS
173s autopkgtest [04:19:22]: @@@@@@@@@@@@@@@@@@@@ summary
173s pkg-r-autopkgtest    PASS