0s autopkgtest [04:16:28]: starting date and time: 2026-02-10 04:16:28+0000
  0s autopkgtest [04:16:28]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:16:28]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1igogx8m/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-progeny --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-11.secgroup --name adt-resolute-amd64-r-bioc-progeny-20260210-041627-juju-7f2275-prod-proposed-migration-environment-15-326de25b-2133-4f48-a4d1-8831649e51fb --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-r-bioc-progeny-20260210-041627-juju-7f2275-prod-proposed-migration-environment-15-326de25b-2133-4f48-a4d1-8831649e51fb from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 73s autopkgtest [04:17:41]: testbed dpkg architecture: amd64
 73s autopkgtest [04:17:41]: testbed apt version: 3.1.14
 73s autopkgtest [04:17:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 73s autopkgtest [04:17:41]: testbed release detected to be: None
 74s autopkgtest [04:17:42]: updating testbed package index (apt update)
 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 74s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 74s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 76s Fetched 5189 kB in 1s (4636 kB/s)
 76s Reading package lists...
 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 78s Reading package lists...
 78s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 78s Calculating upgrade...
 78s The following package was automatically installed and is no longer required:
 78s   libpython3.13
 78s Use 'sudo apt autoremove' to remove it.
 78s The following NEW packages will be installed:
 78s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 78s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 78s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 78s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 78s The following packages will be upgraded:
 78s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 78s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 78s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 78s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 78s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 78s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 78s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 78s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 78s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 78s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 78s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 78s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 78s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 78s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 78s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 78s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 78s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 237 MB of archives.
 78s After this operation, 339 MB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 79s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 79s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 79s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 79s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 79s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 79s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 79s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 79s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 79s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 79s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 79s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 79s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 79s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 79s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 79s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 79s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 79s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 79s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 79s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 79s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 79s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 79s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 79s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 79s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 79s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 79s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 79s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 79s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 79s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 79s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 79s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 79s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 79s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 79s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 79s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 79s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 79s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 79s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 79s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 79s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 79s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 79s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 80s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 80s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 80s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 80s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 84s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 85s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 85s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 85s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 85s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 85s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 85s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 85s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 85s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 85s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 85s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 85s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 85s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 85s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 85s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 85s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 85s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 85s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 85s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 85s Fetched 237 MB in 7s (33.1 MB/s)
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 86s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 86s Setting up debianutils (5.23.2build1) ...
 86s (Reading database ... 
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 86s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 86s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 86s Setting up dash (0.5.12-12ubuntu3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 86s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 86s Setting up findutils (4.10.0-3build2) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 86s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 86s Setting up sed (4.9-2build3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 86s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 86s Setting up tar (1.35+dfsg-3.1build2) ...
 86s (Reading database ... 
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 95s Setting up libglib2.0-data (2.87.2-2) ...
 95s Setting up pollinate (4.33-4ubuntu5) ...
106s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
106s Setting up libwrap0:amd64 (7.6.q-36build2) ...
106s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
107s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
107s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
107s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
107s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
107s Setting up patch (2.8-2build1) ...
107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
107s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
107s Setting up lsof (4.99.4+dfsg-2build2) ...
107s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
107s Setting up dracut-install (109-11ubuntu1) ...
107s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
107s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
107s Setting up pnp.ids (0.394-1build1) ...
107s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
107s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
107s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
107s Setting up mawk (1.3.4.20260129-1) ...
107s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
107s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
107s Setting up linux-image-virtual (6.19.0-3.3) ...
107s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
107s Setting up libbsd0:amd64 (0.12.2-2build2) ...
107s Setting up libdrm-common (2.4.131-1) ...
107s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
107s Setting up dbus-bin (1.16.2-2ubuntu3) ...
107s Setting up libonig5:amd64 (6.9.10-1build1) ...
107s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
107s Setting up ethtool (1:6.15-3build1) ...
107s Setting up python3-referencing (0.36.2-1ubuntu2) ...
107s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
107s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
107s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
107s Setting up tcpdump (4.99.5-2ubuntu3) ...
108s Setting up linux-image-generic (6.19.0-3.3) ...
108s Setting up wget (1.25.0-2ubuntu4) ...
108s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
108s Setting up iptables (1.8.11-2ubuntu3) ...
108s Setting up iproute2 (6.18.0-1ubuntu1) ...
108s Setting up linux-headers-generic (6.19.0-3.3) ...
108s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
108s Setting up hwdata (0.394-1build1) ...
108s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
108s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
108s No schema files found: doing nothing.
108s Setting up dbus (1.16.2-2ubuntu3) ...
108s A reboot is required to replace the running dbus-daemon.
108s Please reboot the system when convenient.
108s Setting up shared-mime-info (2.4-5build3) ...
109s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
109s Setting up pciutils (1:3.14.0-1build2) ...
109s Setting up python3-markdown-it (3.0.0-3build1) ...
109s Setting up libdrm2:amd64 (2.4.131-1) ...
109s Setting up libpython3.14:amd64 (3.14.2-1) ...
109s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
109s Setting up linux-tools-common (6.19.0-3.3) ...
109s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
109s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
109s Setting up apt (3.1.15) ...
109s Setting up linux-headers-virtual (6.19.0-3.3) ...
109s Setting up linux-generic (6.19.0-3.3) ...
109s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
109s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
109s Setting up ubuntu-standard (1.564) ...
109s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
109s Setting up linux-virtual (6.19.0-3.3) ...
109s Setting up linux-perf (6.19.0-3.3) ...
109s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
109s Processing triggers for debianutils (5.23.2build1) ...
109s Processing triggers for install-info (7.2-5) ...
109s Processing triggers for initramfs-tools (0.150ubuntu7) ...
109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
115s Processing triggers for libc-bin (2.42-2ubuntu4) ...
115s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
115s /etc/kernel/postinst.d/initramfs-tools:
115s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
118s /etc/kernel/postinst.d/zz-update-grub:
118s Sourcing file `/etc/default/grub'
118s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
118s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
118s Generating grub configuration file ...
118s Found linux image: /boot/vmlinuz-6.19.0-3-generic
118s Found initrd image: /boot/initrd.img-6.19.0-3-generic
118s Found linux image: /boot/vmlinuz-6.18.0-9-generic
118s Found initrd image: /boot/initrd.img-6.18.0-9-generic
118s Warning: os-prober will not be executed to detect other bootable partitions.
118s Systems on them will not be added to the GRUB boot configuration.
118s Check GRUB_DISABLE_OS_PROBER documentation entry.
118s Adding boot menu entry for UEFI Firmware Settings ...
118s done
118s autopkgtest [04:18:26]: upgrading testbed (apt dist-upgrade and autopurge)
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s Calculating upgrade...
119s The following package was automatically installed and is no longer required:
119s   libpython3.13
119s Use 'sudo apt autoremove' to remove it.
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s Solving dependencies...
120s The following packages will be REMOVED:
120s   libpython3.13*
120s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
120s After this operation, 7599 kB disk space will be freed.
120s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
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(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 40%
(Reading database ... 45%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
120s Removing libpython3.13:amd64 (3.13.11-1) ...
120s Processing triggers for libc-bin (2.42-2ubuntu4) ...
120s autopkgtest [04:18:28]: rebooting testbed after setup commands that affected boot
150s autopkgtest [04:18:58]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
152s autopkgtest [04:19:00]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-progeny
154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-progeny 1.28.0+ds-2 (dsc) [2216 B]
154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-progeny 1.28.0+ds-2 (tar) [9051 kB]
154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-progeny 1.28.0+ds-2 (diff) [3952 B]
154s gpgv: Signature made Sun Jan 12 02:52:19 2025 UTC
154s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
154s gpgv:                issuer "crusoe@debian.org"
154s gpgv: Can't check signature: No public key
154s dpkg-source: warning: cannot verify inline signature for ./r-bioc-progeny_1.28.0+ds-2.dsc: no acceptable signature found
154s autopkgtest [04:19:02]: testing package r-bioc-progeny version 1.28.0+ds-2
155s autopkgtest [04:19:03]: build not needed
158s autopkgtest [04:19:06]: test pkg-r-autopkgtest: preparing testbed
159s Reading package lists...
159s Building dependency tree...
159s Reading state information...
159s Solving dependencies...
159s The following NEW packages will be installed:
159s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
159s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
159s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
159s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
159s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
159s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
159s   javascript-common libamd3 libasan8 libbibtex-parser-perl libblas-dev
159s   libblas3 libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev
159s   libcairo2 libcc1-0 libcolamd3 libcrypt-dev libdatrie1 libdeflate-dev
159s   libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5
159s   libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
159s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
159s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
159s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
159s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
159s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
159s   libjs-popper.js libjs-prettify libjs-sifter.js
159s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
159s   liblatex-tounicode-perl liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev
159s   libmpc3 libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0
159s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0
159s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
159s   libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6
159s   libstdc++-15-dev libsuitesparseconfig7 libsynctex2 libtcl8.6 libteckit0
159s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
159s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
159s   libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64
159s   linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc
159s   pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
159s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
159s   r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart
159s   r-bioc-biostrings r-bioc-decoupler r-bioc-delayedarray r-bioc-deseq2
159s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
159s   r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-progeny
159s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-singlecellexperiment
159s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils
159s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-backports
159s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64
159s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom
159s   r-cran-bslib r-cran-cachem r-cran-callr r-cran-catools r-cran-cellranger
159s   r-cran-cli r-cran-clipr r-cran-cluster r-cran-codetools r-cran-colourpicker
159s   r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk
159s   r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir
159s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr
159s   r-cran-dqrng r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies
159s   r-cran-fastmap r-cran-filelock r-cran-fitdistrplus r-cran-fnn
159s   r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger
159s   r-cran-futile.options r-cran-future r-cran-future.apply r-cran-gdata
159s   r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals
159s   r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable
159s   r-cran-gtools r-cran-here r-cran-highr r-cran-hms r-cran-htmltools
159s   r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ica
159s   r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite
159s   r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later
159s   r-cran-lattice r-cran-lazyeval r-cran-leidenbase r-cran-lifecycle
159s   r-cran-listenv r-cran-littler r-cran-lmtest r-cran-locfit r-cran-magrittr
159s   r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
159s   r-cran-miniui r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-patchwork
159s   r-cran-pbapply r-cran-pheatmap r-cran-pillar r-cran-pkgbuild
159s   r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly
159s   r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise r-cran-prettyunits
159s   r-cran-processx r-cran-progress r-cran-progressr r-cran-promises r-cran-ps
159s   r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer
159s   r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen
159s   r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml r-cran-readr
159s   r-cran-readxl r-cran-rematch r-cran-reshape2 r-cran-reticulate r-cran-rlang
159s   r-cran-rmarkdown r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rsqlite
159s   r-cran-rtsne r-cran-s7 r-cran-sass r-cran-scales r-cran-scattermore
159s   r-cran-sctransform r-cran-seurat r-cran-seuratobject r-cran-shiny
159s   r-cran-shinyjs r-cran-sitmo r-cran-snow r-cran-sourcetools r-cran-sp
159s   r-cran-spam r-cran-spatstat.data r-cran-spatstat.explore
159s   r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse
159s   r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stringi r-cran-stringr
159s   r-cran-survival r-cran-sys r-cran-tensor r-cran-testthat r-cran-tibble
159s   r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8
159s   r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo
159s   r-cran-withr r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml r-cran-zoo
159s   rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra
159s   texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip
159s   zlib1g-dev
159s 0 upgraded, 380 newly installed, 0 to remove and 0 not upgraded.
159s Need to get 535 MB of archives.
159s After this operation, 1562 MB of additional disk space will be used.
159s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
159s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
160s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
160s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
160s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
160s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
160s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
160s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
160s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
160s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
160s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
160s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
160s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
160s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
160s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
160s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
161s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
161s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
161s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
161s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
161s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
161s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
161s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
161s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
161s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
161s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
161s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
162s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
162s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
162s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
162s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
162s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
162s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
162s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
162s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
162s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
162s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
162s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
162s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
162s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB]
162s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
162s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
162s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
162s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
162s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
162s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
162s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
162s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
162s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
162s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB]
162s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB]
162s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
162s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB]
162s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB]
162s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
162s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
162s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
162s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
162s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
162s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
162s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
162s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
162s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
163s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
163s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB]
163s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
163s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
163s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
163s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB]
163s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB]
163s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
163s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
163s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
163s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
163s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
163s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
163s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
163s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
163s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
163s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
163s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
163s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
163s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
163s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
163s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
163s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
163s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
163s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
163s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
163s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
163s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
163s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
163s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
163s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
163s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
163s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB]
163s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
163s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
163s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
163s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
163s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB]
163s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
163s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
163s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
163s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
163s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
163s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
163s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
163s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
163s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
163s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
163s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
163s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
163s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
163s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
163s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
163s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB]
163s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB]
163s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
163s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
163s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
163s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB]
163s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
163s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB]
163s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB]
163s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
163s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
163s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
163s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
163s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
163s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
163s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
163s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB]
163s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB]
163s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB]
163s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB]
163s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
163s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB]
163s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
163s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
163s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
163s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
163s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
164s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
164s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
164s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
164s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
164s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
164s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
164s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
164s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
164s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
164s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
164s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
164s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
164s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
164s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
165s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
165s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
165s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB]
165s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
165s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
165s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
165s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
165s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
165s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB]
165s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
165s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
165s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
165s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
165s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB]
165s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
165s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
165s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
165s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
165s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
165s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
165s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
165s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
165s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
165s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
165s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
165s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
165s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
165s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
165s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
165s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
165s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
165s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
165s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
165s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
165s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
165s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
165s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
165s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
166s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
166s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
166s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
166s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
166s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
166s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB]
166s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
166s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
166s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
166s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB]
166s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB]
166s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
166s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
166s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
166s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
166s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
166s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
166s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
166s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
166s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
166s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
166s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
166s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
166s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
166s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
166s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
166s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
166s Get:223 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
166s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
166s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
166s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
166s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
166s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
166s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
166s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
166s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
166s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
166s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
166s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
166s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
166s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
166s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
166s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
166s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
166s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
166s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
166s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
166s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
167s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
167s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
167s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
167s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB]
167s Get:248 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB]
167s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB]
167s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB]
167s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB]
167s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB]
168s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
168s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
168s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB]
168s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
168s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
169s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB]
169s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB]
169s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB]
169s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
169s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-broom all 1.0.12+dfsg-1 [1708 kB]
169s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
169s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
169s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB]
169s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-decoupler all 2.12.0+dfsg-2 [2044 kB]
169s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
169s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
169s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
169s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
169s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB]
169s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
169s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
169s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
169s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB]
169s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
170s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
170s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
170s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
170s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
170s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
170s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
170s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
170s Get:284 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
170s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB]
170s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB]
170s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggrepel amd64 0.9.6-1 [270 kB]
170s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB]
170s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
170s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
170s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-progeny all 1.28.0+ds-2 [8873 kB]
170s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB]
170s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
170s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
170s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
170s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
171s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
171s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-catools amd64 1.18.3-1 [209 kB]
171s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rematch all 2.0.0-1 [18.3 kB]
171s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cellranger all 1.1.0-3build1 [103 kB]
171s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clipr all 0.8.0-1build1 [54.0 kB]
171s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB]
171s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
171s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-miniui all 0.1.2-1 [37.3 kB]
171s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shinyjs all 2.1.0-1build1 [967 kB]
171s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB]
171s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB]
171s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB]
171s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crosstalk all 1.2.2+dfsg-1 [181 kB]
171s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB]
171s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
171s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
171s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
171s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dotcall64 amd64 1.2-1 [36.8 kB]
171s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sitmo amd64 2.0.2-1build1 [133 kB]
171s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB]
171s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastdummies all 1.7.5-1 [51.1 kB]
171s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
171s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB]
171s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fitdistrplus all 1.2-6-1 [2764 kB]
171s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB]
171s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.19.0-1 [160 kB]
171s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB]
171s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB]
171s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB]
171s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtools amd64 3.9.5-1build1 [345 kB]
171s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gdata all 3.0.1-1build1 [491 kB]
171s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggridges all 0.5.7-1 [2214 kB]
171s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB]
171s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB]
171s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gplots all 3.3.0-1 [3825 kB]
171s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
171s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-here all 1.0.2-1 [51.5 kB]
171s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB]
171s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-igraph amd64 2.1.4-1build1 [5218 kB]
172s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB]
172s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-leidenbase amd64 0.1.32-1 [2512 kB]
172s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB]
172s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB]
172s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
172s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB]
172s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB]
172s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pheatmap all 1.0.13-1 [79.6 kB]
172s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
172s Get:345 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
172s Get:346 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plotly all 4.10.4+dfsg-4 [3635 kB]
172s Get:347 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB]
172s Get:348 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
172s Get:349 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progressr all 0.15.1-1 [353 kB]
172s Get:350 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB]
172s Get:351 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB]
172s Get:352 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB]
172s Get:353 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpphnsw amd64 0.6.0+ds-1 [185 kB]
172s Get:354 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppprogress all 0.4.2-2build2 [23.0 kB]
172s Get:355 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-1 [118 kB]
172s Get:356 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tzdb amd64 0.5.0-1 [538 kB]
172s Get:357 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vroom amd64 1.7.0-1 [910 kB]
172s Get:358 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-readr amd64 2.1.6-1 [818 kB]
172s Get:359 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-readxl amd64 1.4.5-1 [361 kB]
172s Get:360 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reticulate amd64 1.41.0.1+dfsg-1 [1306 kB]
172s Get:361 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rocr all 1.0-12-1 [465 kB]
172s Get:362 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB]
172s Get:363 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB]
172s Get:364 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB]
172s Get:365 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB]
172s Get:366 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
172s Get:367 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spam amd64 2.11-1-1 [2756 kB]
173s Get:368 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB]
173s Get:369 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB]
173s Get:370 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB]
173s Get:371 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB]
173s Get:372 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB]
173s Get:373 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB]
173s Get:374 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB]
173s Get:375 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB]
173s Get:376 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB]
173s Get:377 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-uwot amd64 0.2.3-1 [1080 kB]
173s Get:378 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-seurat amd64 5.2.1-5 [3293 kB]
173s Get:379 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
173s Get:380 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
174s Preconfiguring packages ...
174s Fetched 535 MB in 14s (38.2 MB/s)
174s Selecting previously unselected package libc-dev-bin.
174s (Reading database ... 
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174s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
174s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
174s Selecting previously unselected package linux-libc-dev:amd64.
174s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
174s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
174s Selecting previously unselected package libcrypt-dev:amd64.
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174s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
174s Selecting previously unselected package rpcsvc-proto.
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174s Selecting previously unselected package libc6-dev:amd64.
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174s Selecting previously unselected package libisl23:amd64.
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174s Selecting previously unselected package libmpc3:amd64.
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174s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
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174s Selecting previously unselected package cpp-15.
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174s Selecting previously unselected package cpp-x86-64-linux-gnu.
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174s Selecting previously unselected package cpp.
174s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
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174s Selecting previously unselected package libcc1-0:amd64.
174s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
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174s Selecting previously unselected package libgomp1:amd64.
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174s Selecting previously unselected package libitm1:amd64.
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174s Selecting previously unselected package libasan8:amd64.
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174s Selecting previously unselected package liblsan0:amd64.
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174s Selecting previously unselected package libtsan2:amd64.
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174s Selecting previously unselected package libquadmath0:amd64.
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174s Selecting previously unselected package libgcc-15-dev:amd64.
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174s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
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175s Selecting previously unselected package gcc-15.
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175s Selecting previously unselected package gcc-x86-64-linux-gnu.
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175s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
175s Selecting previously unselected package gcc.
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175s Selecting previously unselected package libstdc++-15-dev:amd64.
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175s Selecting previously unselected package g++-15-x86-64-linux-gnu.
175s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
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175s Selecting previously unselected package g++-15.
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175s Selecting previously unselected package g++-x86-64-linux-gnu.
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175s Selecting previously unselected package g++.
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175s Unpacking g++ (4:15.2.0-4ubuntu1) ...
175s Selecting previously unselected package build-essential.
175s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
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175s Selecting previously unselected package dctrl-tools.
175s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
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175s Selecting previously unselected package fonts-dejavu-mono.
175s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
175s Unpacking fonts-dejavu-mono (2.37-8build1) ...
175s Selecting previously unselected package fonts-dejavu-core.
175s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
175s Unpacking fonts-dejavu-core (2.37-8build1) ...
175s Selecting previously unselected package fontconfig-config.
175s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
175s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
175s Selecting previously unselected package libfontconfig1:amd64.
175s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
175s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
175s Selecting previously unselected package fontconfig.
175s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
175s Unpacking fontconfig (2.17.1-3ubuntu1) ...
175s Selecting previously unselected package fonts-font-awesome.
175s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
175s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
175s Selecting previously unselected package fonts-glyphicons-halflings.
175s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
175s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
175s Selecting previously unselected package fonts-lmodern.
175s Preparing to unpack .../039-fonts-lmodern_2.005-1build1_all.deb ...
175s Unpacking fonts-lmodern (2.005-1build1) ...
175s Selecting previously unselected package fonts-mathjax.
175s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
175s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
175s Selecting previously unselected package libgfortran5:amd64.
175s Preparing to unpack .../041-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
175s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
175s Selecting previously unselected package libgfortran-15-dev:amd64.
175s Preparing to unpack .../042-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
175s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
175s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
175s Preparing to unpack .../043-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
175s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gfortran-15.
176s Preparing to unpack .../044-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gfortran-x86-64-linux-gnu.
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176s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package gfortran.
176s Preparing to unpack .../046-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package icu-devtools.
176s Preparing to unpack .../047-icu-devtools_78.2-1ubuntu1_amd64.deb ...
176s Unpacking icu-devtools (78.2-1ubuntu1) ...
176s Selecting previously unselected package javascript-common.
176s Preparing to unpack .../048-javascript-common_12+nmu1build1_all.deb ...
176s Unpacking javascript-common (12+nmu1build1) ...
176s Selecting previously unselected package libsuitesparseconfig7:amd64.
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176s Unpacking libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ...
176s Selecting previously unselected package libamd3:amd64.
176s Preparing to unpack .../050-libamd3_1%3a7.12.1+dfsg-1_amd64.deb ...
176s Unpacking libamd3:amd64 (1:7.12.1+dfsg-1) ...
176s Selecting previously unselected package libio-string-perl.
176s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ...
176s Unpacking libio-string-perl (1.08-4) ...
176s Selecting previously unselected package liblatex-tounicode-perl.
176s Preparing to unpack .../052-liblatex-tounicode-perl_1.93-1_all.deb ...
176s Unpacking liblatex-tounicode-perl (1.93-1) ...
176s Selecting previously unselected package libbibtex-parser-perl.
176s Preparing to unpack .../053-libbibtex-parser-perl_1.93+dfsg-1_all.deb ...
176s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ...
176s Selecting previously unselected package libblas3:amd64.
176s Preparing to unpack .../054-libblas3_3.12.1-7ubuntu1_amd64.deb ...
176s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
176s Selecting previously unselected package libblas-dev:amd64.
176s Preparing to unpack .../055-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
176s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
176s Selecting previously unselected package libboost1.90-dev:amd64.
176s Preparing to unpack .../056-libboost1.90-dev_1.90.0-2ubuntu1_amd64.deb ...
176s Unpacking libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ...
176s Selecting previously unselected package libboost-dev:amd64.
177s Preparing to unpack .../057-libboost-dev_1.90.0.0ubuntu3_amd64.deb ...
177s Unpacking libboost-dev:amd64 (1.90.0.0ubuntu3) ...
177s Selecting previously unselected package libbz2-dev:amd64.
177s Preparing to unpack .../058-libbz2-dev_1.0.8-6build2_amd64.deb ...
177s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
177s Selecting previously unselected package libpixman-1-0:amd64.
177s Preparing to unpack .../059-libpixman-1-0_0.46.4-1_amd64.deb ...
177s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
177s Selecting previously unselected package libxcb-render0:amd64.
177s Preparing to unpack .../060-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
177s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
177s Selecting previously unselected package libxcb-shm0:amd64.
177s Preparing to unpack .../061-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
177s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
177s Selecting previously unselected package libxrender1:amd64.
177s Preparing to unpack .../062-libxrender1_1%3a0.9.12-1_amd64.deb ...
177s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
177s Selecting previously unselected package libcairo2:amd64.
177s Preparing to unpack .../063-libcairo2_1.18.4-3_amd64.deb ...
177s Unpacking libcairo2:amd64 (1.18.4-3) ...
177s Selecting previously unselected package libcolamd3:amd64.
177s Preparing to unpack .../064-libcolamd3_1%3a7.12.1+dfsg-1_amd64.deb ...
177s Unpacking libcolamd3:amd64 (1:7.12.1+dfsg-1) ...
177s Selecting previously unselected package libdatrie1:amd64.
177s Preparing to unpack .../065-libdatrie1_0.2.14-1_amd64.deb ...
177s Unpacking libdatrie1:amd64 (0.2.14-1) ...
177s Selecting previously unselected package libdeflate0:amd64.
177s Preparing to unpack .../066-libdeflate0_1.23-2build1_amd64.deb ...
177s Unpacking libdeflate0:amd64 (1.23-2build1) ...
177s Selecting previously unselected package libdeflate-dev:amd64.
177s Preparing to unpack .../067-libdeflate-dev_1.23-2build1_amd64.deb ...
177s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
177s Selecting previously unselected package libltdl7:amd64.
177s Preparing to unpack .../068-libltdl7_2.5.4-9_amd64.deb ...
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177s Selecting previously unselected package libglpk40:amd64.
177s Preparing to unpack .../069-libglpk40_5.0-2_amd64.deb ...
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177s Selecting previously unselected package libgraphite2-3:amd64.
177s Preparing to unpack .../070-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
177s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
177s Selecting previously unselected package libharfbuzz0b:amd64.
177s Preparing to unpack .../071-libharfbuzz0b_12.3.2-1_amd64.deb ...
177s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
177s Selecting previously unselected package x11-common.
177s Preparing to unpack .../072-x11-common_1%3a7.7+24ubuntu1_all.deb ...
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177s Selecting previously unselected package libice6:amd64.
177s Preparing to unpack .../073-libice6_2%3a1.1.1-1build1_amd64.deb ...
177s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
177s Selecting previously unselected package libicu-dev:amd64.
177s Preparing to unpack .../074-libicu-dev_78.2-1ubuntu1_amd64.deb ...
177s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
177s Selecting previously unselected package libjpeg-turbo8:amd64.
177s Preparing to unpack .../075-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
177s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
177s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
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177s Selecting previously unselected package libjpeg8:amd64.
177s Preparing to unpack .../077-libjpeg8_8c-2ubuntu12_amd64.deb ...
177s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ...
177s Selecting previously unselected package libjpeg8-dev:amd64.
177s Preparing to unpack .../078-libjpeg8-dev_8c-2ubuntu12_amd64.deb ...
177s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ...
177s Selecting previously unselected package libjpeg-dev:amd64.
177s Preparing to unpack .../079-libjpeg-dev_8c-2ubuntu12_amd64.deb ...
177s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ...
177s Selecting previously unselected package libjs-bootstrap.
177s Preparing to unpack .../080-libjs-bootstrap_3.4.1+dfsg-6_all.deb ...
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177s Selecting previously unselected package libjs-popper.js.
177s Preparing to unpack .../081-libjs-popper.js_1.16.1+ds-6build1_all.deb ...
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177s Selecting previously unselected package libjs-bootstrap4.
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177s Selecting previously unselected package libjs-d3.
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177s Selecting previously unselected package libjs-es5-shim.
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177s Selecting previously unselected package libjs-highlight.js.
177s Preparing to unpack .../085-libjs-highlight.js_10.7.3+dfsg-2_all.deb ...
177s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ...
177s Selecting previously unselected package libjs-jquery.
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177s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ...
177s Selecting previously unselected package libjs-jquery-datatables.
177s Preparing to unpack .../087-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ...
177s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
177s Selecting previously unselected package libjs-sifter.js.
177s Preparing to unpack .../088-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
177s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
177s Selecting previously unselected package libjs-microplugin.js.
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177s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ...
177s Selecting previously unselected package libjs-jquery-selectize.js.
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177s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
177s Selecting previously unselected package libjs-jquery-ui.
177s Preparing to unpack .../091-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ...
177s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ...
177s Selecting previously unselected package libjs-json.
177s Preparing to unpack .../092-libjs-json_0~20221030+~1.0.8-1build1_all.deb ...
177s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ...
177s Selecting previously unselected package libjs-lunr.
177s Preparing to unpack .../093-libjs-lunr_2.3.9~dfsg-2_all.deb ...
177s Unpacking libjs-lunr (2.3.9~dfsg-2) ...
177s Selecting previously unselected package libjs-prettify.
177s Preparing to unpack .../094-libjs-prettify_2015.12.04+dfsg-3_all.deb ...
177s Unpacking libjs-prettify (2015.12.04+dfsg-3) ...
177s Selecting previously unselected package libkpathsea6:amd64.
177s Preparing to unpack .../095-libkpathsea6_2025.20250727.75242+ds-5build1_amd64.deb ...
177s Unpacking libkpathsea6:amd64 (2025.20250727.75242+ds-5build1) ...
177s Selecting previously unselected package liblapack3:amd64.
178s Preparing to unpack .../096-liblapack3_3.12.1-7ubuntu1_amd64.deb ...
178s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ...
178s Selecting previously unselected package liblapack-dev:amd64.
178s Preparing to unpack .../097-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ...
178s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
178s Selecting previously unselected package liblerc4:amd64.
178s Preparing to unpack .../098-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ...
178s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
178s Selecting previously unselected package liblua5.4-0:amd64.
178s Preparing to unpack .../099-liblua5.4-0_5.4.8-1_amd64.deb ...
178s Unpacking liblua5.4-0:amd64 (5.4.8-1) ...
178s Selecting previously unselected package libmpfi0:amd64.
178s Preparing to unpack .../100-libmpfi0_1.5.4+ds-4build1_amd64.deb ...
178s Unpacking libmpfi0:amd64 (1.5.4+ds-4build1) ...
178s Selecting previously unselected package libncurses-dev:amd64.
178s Preparing to unpack .../101-libncurses-dev_6.6+20251231-1_amd64.deb ...
178s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ...
178s Selecting previously unselected package libthai-data.
178s Preparing to unpack .../102-libthai-data_0.1.30-1_all.deb ...
178s Unpacking libthai-data (0.1.30-1) ...
178s Selecting previously unselected package libthai0:amd64.
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178s Preparing to unpack .../134-libxaw7_2%3a1.0.16-1build1_amd64.deb ...
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178s Selecting previously unselected package libzzip-0-13t64:amd64.
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178s Selecting previously unselected package node-bootstrap-sass.
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179s Selecting previously unselected package pandoc-data.
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180s Selecting previously unselected package r-base-core.
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180s Selecting previously unselected package liblzma-dev:amd64.
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180s Selecting previously unselected package pkgconf-bin.
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180s Selecting previously unselected package pkgconf:amd64.
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180s Selecting previously unselected package libtirpc-dev:amd64.
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180s Selecting previously unselected package r-bioc-biocgenerics.
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180s Selecting previously unselected package r-cran-dbi.
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180s Selecting previously unselected package r-cran-rsqlite.
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180s Selecting previously unselected package r-cran-jsonlite.
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180s Selecting previously unselected package r-cran-sys.
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180s Selecting previously unselected package r-bioc-zlibbioc.
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180s Selecting previously unselected package r-bioc-xvector.
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180s Selecting previously unselected package r-bioc-ucsc.utils.
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180s Selecting previously unselected package r-bioc-genomeinfodbdata.
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180s Selecting previously unselected package r-cran-crayon.
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180s Selecting previously unselected package r-bioc-biostrings.
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180s Selecting previously unselected package r-bioc-keggrest.
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180s Selecting previously unselected package r-bioc-annotationdbi.
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180s Selecting previously unselected package r-cran-generics.
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180s Selecting previously unselected package r-cran-pillar.
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181s Selecting previously unselected package r-cran-tibble.
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181s Selecting previously unselected package r-cran-tidyselect.
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181s Selecting previously unselected package r-cran-dplyr.
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181s Selecting previously unselected package r-cran-purrr.
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181s Selecting previously unselected package r-cran-stringi.
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181s Selecting previously unselected package r-cran-stringr.
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181s Selecting previously unselected package r-cran-tidyr.
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181s Selecting previously unselected package r-cran-dbplyr.
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181s Selecting previously unselected package r-cran-filelock.
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181s Selecting previously unselected package r-bioc-biocfilecache.
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181s Selecting previously unselected package r-cran-formatr.
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181s Unpacking r-cran-formatr (1.14-2) ...
181s Selecting previously unselected package r-cran-lambda.r.
181s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build2_all.deb ...
181s Unpacking r-cran-lambda.r (1.2.4-2build2) ...
181s Selecting previously unselected package r-cran-futile.options.
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181s Selecting previously unselected package r-cran-futile.logger.
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181s Selecting previously unselected package r-cran-snow.
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181s Selecting previously unselected package r-cran-codetools.
181s Preparing to unpack .../212-r-cran-codetools_0.2-20-1build1_all.deb ...
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181s Selecting previously unselected package r-cran-bh.
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181s Selecting previously unselected package r-bioc-biocparallel.
181s Preparing to unpack .../214-r-bioc-biocparallel_1.40.0-2_amd64.deb ...
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181s Selecting previously unselected package r-cran-base64enc.
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181s Selecting previously unselected package r-cran-digest.
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181s Selecting previously unselected package r-cran-htmltools.
181s Preparing to unpack .../217-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
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181s Selecting previously unselected package r-cran-evaluate.
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181s Selecting previously unselected package r-cran-xfun.
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181s Selecting previously unselected package r-cran-highr.
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181s Selecting previously unselected package r-cran-yaml.
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181s Selecting previously unselected package libjs-mathjax.
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181s Selecting previously unselected package r-cran-knitr.
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181s Selecting previously unselected package r-cran-jquerylib.
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181s Selecting previously unselected package r-cran-fs.
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181s Selecting previously unselected package r-cran-rappdirs.
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181s Selecting previously unselected package r-cran-sass.
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181s Selecting previously unselected package r-cran-bslib.
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182s Selecting previously unselected package r-cran-fontawesome.
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182s Selecting previously unselected package r-cran-tinytex.
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182s Selecting previously unselected package libjs-modernizr.
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182s Selecting previously unselected package r-cran-littler.
182s Preparing to unpack .../232-r-cran-littler_0.3.22-1_amd64.deb ...
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182s Selecting previously unselected package r-cran-pkgkitten.
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182s Selecting previously unselected package r-cran-rcpp.
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182s Selecting previously unselected package r-cran-later.
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182s Selecting previously unselected package r-cran-promises.
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182s Selecting previously unselected package r-cran-httpuv.
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182s Selecting previously unselected package r-cran-xtable.
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182s Selecting previously unselected package r-cran-sourcetools.
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182s Selecting previously unselected package r-cran-commonmark.
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182s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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182s Selecting previously unselected package r-cran-shiny.
182s Preparing to unpack .../242-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
182s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
182s Selecting previously unselected package r-cran-rmarkdown.
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182s Selecting previously unselected package r-cran-bookdown.
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182s Selecting previously unselected package r-cran-biocmanager.
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182s Selecting previously unselected package tex-common.
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182s Selecting previously unselected package t1utils.
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182s Selecting previously unselected package texlive-binaries.
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183s Selecting previously unselected package texlive-bibtex-extra.
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184s Selecting previously unselected package r-bioc-biocversion.
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184s Selecting previously unselected package r-bioc-biocstyle.
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184s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
184s Selecting previously unselected package r-cran-hms.
184s Preparing to unpack .../254-r-cran-hms_1.1.4-1_all.deb ...
184s Unpacking r-cran-hms (1.1.4-1) ...
184s Selecting previously unselected package r-cran-prettyunits.
184s Preparing to unpack .../255-r-cran-prettyunits_1.2.0-1_all.deb ...
184s Unpacking r-cran-prettyunits (1.2.0-1) ...
184s Selecting previously unselected package r-cran-progress.
184s Preparing to unpack .../256-r-cran-progress_1.2.3-1_all.deb ...
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184s Selecting previously unselected package r-cran-httr2.
184s Preparing to unpack .../257-r-cran-httr2_1.1.1-2_all.deb ...
184s Unpacking r-cran-httr2 (1.1.1-2) ...
184s Selecting previously unselected package r-cran-xml2.
184s Preparing to unpack .../258-r-cran-xml2_1.4.1-1_amd64.deb ...
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184s Selecting previously unselected package r-bioc-biomart.
184s Preparing to unpack .../259-r-bioc-biomart_2.62.1+dfsg-1_all.deb ...
184s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ...
184s Selecting previously unselected package r-cran-backports.
184s Preparing to unpack .../260-r-cran-backports_1.5.0-2_amd64.deb ...
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184s Selecting previously unselected package r-cran-broom.
184s Preparing to unpack .../261-r-cran-broom_1.0.12+dfsg-1_all.deb ...
184s Unpacking r-cran-broom (1.0.12+dfsg-1) ...
184s Selecting previously unselected package r-cran-lattice.
184s Preparing to unpack .../262-r-cran-lattice_0.22-7-1_amd64.deb ...
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184s Selecting previously unselected package r-cran-matrix.
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184s Selecting previously unselected package r-cran-parallelly.
184s Preparing to unpack .../264-r-cran-parallelly_1.42.0-1_amd64.deb ...
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184s Selecting previously unselected package r-bioc-decoupler.
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184s Selecting previously unselected package r-cran-matrixstats.
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184s Selecting previously unselected package r-bioc-matrixgenerics.
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184s Selecting previously unselected package r-cran-abind.
184s Preparing to unpack .../268-r-cran-abind_1.4-8-1build1_all.deb ...
184s Unpacking r-cran-abind (1.4-8-1build1) ...
184s Selecting previously unselected package r-bioc-s4arrays.
184s Preparing to unpack .../269-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ...
184s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
184s Selecting previously unselected package r-bioc-sparsearray.
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184s Selecting previously unselected package r-bioc-delayedarray.
184s Preparing to unpack .../271-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ...
184s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
184s Selecting previously unselected package r-bioc-genomicranges.
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184s Selecting previously unselected package r-bioc-summarizedexperiment.
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184s Selecting previously unselected package r-cran-locfit.
184s Preparing to unpack .../274-r-cran-locfit_1.5-9.12-1_amd64.deb ...
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184s Selecting previously unselected package r-cran-gtable.
184s Preparing to unpack .../275-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
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184s Selecting previously unselected package r-cran-isoband.
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185s Selecting previously unselected package r-cran-s7.
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185s Selecting previously unselected package r-cran-farver.
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185s Selecting previously unselected package r-cran-labeling.
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185s Selecting previously unselected package r-cran-rcolorbrewer.
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185s Selecting previously unselected package r-cran-viridislite.
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185s Selecting previously unselected package r-cran-scales.
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185s Unpacking r-cran-scales (1.4.0-1) ...
185s Selecting previously unselected package r-cran-ggplot2.
185s Preparing to unpack .../283-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ...
185s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ...
185s Selecting previously unselected package r-cran-rcpparmadillo.
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185s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ...
185s Selecting previously unselected package r-bioc-deseq2.
185s Preparing to unpack .../285-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ...
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185s Selecting previously unselected package r-cran-ggrepel.
185s Preparing to unpack .../286-r-cran-ggrepel_0.9.6-1_amd64.deb ...
185s Unpacking r-cran-ggrepel (0.9.6-1) ...
185s Selecting previously unselected package r-cran-gridextra.
185s Preparing to unpack .../287-r-cran-gridextra_2.3-3build2_all.deb ...
185s Unpacking r-cran-gridextra (2.3-3build2) ...
185s Selecting previously unselected package r-cran-plyr.
185s Preparing to unpack .../288-r-cran-plyr_1.8.9-1_amd64.deb ...
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185s Selecting previously unselected package r-cran-reshape2.
185s Preparing to unpack .../289-r-cran-reshape2_1.4.4-2build2_amd64.deb ...
185s Unpacking r-cran-reshape2 (1.4.4-2build2) ...
185s Selecting previously unselected package r-bioc-progeny.
185s Preparing to unpack .../290-r-bioc-progeny_1.28.0+ds-2_all.deb ...
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185s Selecting previously unselected package r-bioc-singlecellexperiment.
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185s Selecting previously unselected package r-cran-bitops.
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185s Selecting previously unselected package r-cran-brio.
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185s Selecting previously unselected package r-cran-ps.
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185s Selecting previously unselected package r-cran-processx.
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185s Selecting previously unselected package r-cran-callr.
185s Preparing to unpack .../296-r-cran-callr_3.7.6-1_all.deb ...
185s Unpacking r-cran-callr (3.7.6-1) ...
185s Selecting previously unselected package r-cran-catools.
185s Preparing to unpack .../297-r-cran-catools_1.18.3-1_amd64.deb ...
185s Unpacking r-cran-catools (1.18.3-1) ...
185s Selecting previously unselected package r-cran-rematch.
185s Preparing to unpack .../298-r-cran-rematch_2.0.0-1_all.deb ...
185s Unpacking r-cran-rematch (2.0.0-1) ...
185s Selecting previously unselected package r-cran-cellranger.
185s Preparing to unpack .../299-r-cran-cellranger_1.1.0-3build1_all.deb ...
185s Unpacking r-cran-cellranger (1.1.0-3build1) ...
185s Selecting previously unselected package r-cran-clipr.
185s Preparing to unpack .../300-r-cran-clipr_0.8.0-1build1_all.deb ...
185s Unpacking r-cran-clipr (0.8.0-1build1) ...
185s Selecting previously unselected package r-cran-cluster.
185s Preparing to unpack .../301-r-cran-cluster_2.1.8.2-1_amd64.deb ...
185s Unpacking r-cran-cluster (2.1.8.2-1) ...
185s Selecting previously unselected package r-cran-htmlwidgets.
185s Preparing to unpack .../302-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
185s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
185s Selecting previously unselected package r-cran-miniui.
185s Preparing to unpack .../303-r-cran-miniui_0.1.2-1_all.deb ...
185s Unpacking r-cran-miniui (0.1.2-1) ...
185s Selecting previously unselected package r-cran-shinyjs.
185s Preparing to unpack .../304-r-cran-shinyjs_2.1.0-1build1_all.deb ...
185s Unpacking r-cran-shinyjs (2.1.0-1build1) ...
185s Selecting previously unselected package r-cran-colourpicker.
185s Preparing to unpack .../305-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ...
185s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ...
185s Selecting previously unselected package r-cran-cowplot.
185s Preparing to unpack .../306-r-cran-cowplot_1.1.3+dfsg-1_all.deb ...
185s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ...
185s Selecting previously unselected package r-cran-lazyeval.
185s Preparing to unpack .../307-r-cran-lazyeval_0.2.2-1build2_amd64.deb ...
185s Unpacking r-cran-lazyeval (0.2.2-1build2) ...
185s Selecting previously unselected package r-cran-crosstalk.
185s Preparing to unpack .../308-r-cran-crosstalk_1.2.2+dfsg-1_all.deb ...
185s Unpacking r-cran-crosstalk (1.2.2+dfsg-1) ...
185s Selecting previously unselected package r-cran-data.table.
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186s Selecting previously unselected package r-cran-dotcall64.
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186s Selecting previously unselected package r-cran-sitmo.
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186s Selecting previously unselected package r-cran-fastdummies.
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186s Selecting previously unselected package r-cran-mass.
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186s Selecting previously unselected package r-cran-fitdistrplus.
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186s Selecting previously unselected package r-cran-future.
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186s Selecting previously unselected package r-cran-goftest.
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186s Selecting previously unselected package r-cran-plotly.
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186s Selecting previously unselected package r-cran-polyclip.
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191s Setting up gfortran (4:15.2.0-4ubuntu1) ...
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191s Setting up r-cran-futile.logger (1.4.3-4build2) ...
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191s Setting up r-cran-scales (1.4.0-1) ...
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191s Setting up r-cran-htmltools (0.5.8.1-1) ...
191s Setting up r-cran-tinytex (0.58-1) ...
191s Setting up r-cran-irlba (2.3.5.1-4) ...
191s Setting up r-cran-kernsmooth (2.23-26-1build1) ...
191s Setting up r-cran-knitr (1.51+dfsg-1) ...
191s Setting up r-cran-rcpptoml (0.2.3+dfsg-1) ...
191s Setting up g++ (4:15.2.0-4ubuntu1) ...
191s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
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191s Setting up r-cran-lmtest (0.9.40-1build1) ...
191s Setting up r-cran-sass (0.4.9+dfsg-1) ...
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191s Setting up r-cran-catools (1.18.3-1) ...
191s Setting up r-cran-rtsne (0.17-1) ...
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191s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
191s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
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191s Setting up r-cran-promises (1.3.2+dfsg-1) ...
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191s Setting up r-cran-fastdummies (1.7.5-1) ...
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191s Setting up r-cran-pkgbuild (1.4.8-1) ...
191s Setting up r-cran-dplyr (1.1.4-4) ...
191s Setting up r-cran-rspectra (0.16-2-1) ...
191s Setting up r-cran-gplots (3.3.0-1) ...
191s Setting up r-cran-ggridges (0.5.7-1) ...
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191s Setting up r-cran-uwot (0.2.3-1) ...
191s Setting up r-cran-progress (1.2.3-1) ...
191s Setting up r-cran-cowplot (1.1.3+dfsg-1) ...
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191s Setting up r-cran-pkgload (1.4.1-1) ...
191s Setting up r-cran-patchwork (1.3.0-1) ...
191s Setting up r-cran-rocr (1.0-12-1) ...
191s Setting up r-cran-vroom (1.7.0-1) ...
191s Setting up r-cran-fitdistrplus (1.2-6-1) ...
191s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
191s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
191s Setting up r-cran-cellranger (1.1.0-3build1) ...
191s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
191s Setting up r-cran-spatstat.random (3.3-3-1) ...
191s Setting up r-cran-testthat (3.2.3-1) ...
191s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
191s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
191s Setting up r-cran-spatstat.explore (3.3-4-1) ...
191s Setting up r-cran-readr (2.1.6-1) ...
191s Setting up r-cran-tidyr (1.3.1-1) ...
191s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ...
191s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
191s Setting up r-cran-readxl (1.4.5-1) ...
191s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
191s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
191s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
191s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
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191s Setting up r-cran-broom (1.0.12+dfsg-1) ...
191s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
191s Setting up r-cran-bookdown (0.42+dfsg-1) ...
191s Setting up r-cran-crosstalk (1.2.2+dfsg-1) ...
191s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
191s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
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191s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ...
191s Setting up r-bioc-annotationdbi (1.68.0-2) ...
191s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
191s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ...
191s Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
191s Setting up r-bioc-progeny (1.28.0+ds-2) ...
191s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
191s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ...
191s Setting up r-cran-plotly (4.10.4+dfsg-4) ...
191s Setting up r-cran-seurat (5.2.1-5) ...
191s Processing triggers for man-db (2.13.1-1build1) ...
193s Processing triggers for install-info (7.2-5) ...
193s Processing triggers for libc-bin (2.42-2ubuntu4) ...
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208s autopkgtest [04:19:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
208s autopkgtest [04:19:56]: test pkg-r-autopkgtest: [-----------------------
208s Test: Try to load the R library progeny
208s 
208s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
208s Copyright (C) 2025 The R Foundation for Statistical Computing
208s Platform: x86_64-pc-linux-gnu
208s 
208s R is free software and comes with ABSOLUTELY NO WARRANTY.
208s You are welcome to redistribute it under certain conditions.
208s Type 'license()' or 'licence()' for distribution details.
208s 
208s R is a collaborative project with many contributors.
208s Type 'contributors()' for more information and
208s 'citation()' on how to cite R or R packages in publications.
208s 
208s Type 'demo()' for some demos, 'help()' for on-line help, or
208s 'help.start()' for an HTML browser interface to help.
208s Type 'q()' to quit R.
208s 
208s > library('progeny')
209s > 
209s Test: Run tests for progeny
209s Start: testthat.R
209s 
209s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
209s Copyright (C) 2025 The R Foundation for Statistical Computing
209s Platform: x86_64-pc-linux-gnu
209s 
209s R is free software and comes with ABSOLUTELY NO WARRANTY.
209s You are welcome to redistribute it under certain conditions.
209s Type 'license()' or 'licence()' for distribution details.
209s 
209s R is a collaborative project with many contributors.
209s Type 'contributors()' for more information and
209s 'citation()' on how to cite R or R packages in publications.
209s 
209s Type 'demo()' for some demos, 'help()' for on-line help, or
209s 'help.start()' for an HTML browser interface to help.
209s Type 'q()' to quit R.
209s 
209s > library(testthat)
209s > library(progeny)
209s > 
209s > test_check("progeny")
210s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
210s > 
210s autopkgtest [04:19:58]: test pkg-r-autopkgtest: -----------------------]
211s autopkgtest [04:19:59]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
211s pkg-r-autopkgtest    PASS
211s autopkgtest [04:19:59]: @@@@@@@@@@@@@@@@@@@@ summary
211s pkg-r-autopkgtest    PASS