0s autopkgtest [04:14:24]: starting date and time: 2026-02-10 04:14:24+0000 0s autopkgtest [04:14:24]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:14:24]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x0bs9meg/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-isoformswitchanalyzer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-13.secgroup --name adt-resolute-amd64-r-bioc-isoformswitchanalyzer-20260210-041424-juju-7f2275-prod-proposed-migration-environment-15-fbe2a1cf-d419-477c-bdd1-cb42bb114834 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-r-bioc-isoformswitchanalyzer-20260210-041424-juju-7f2275-prod-proposed-migration-environment-15-fbe2a1cf-d419-477c-bdd1-cb42bb114834 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 75s autopkgtest [04:15:39]: testbed dpkg architecture: amd64 75s autopkgtest [04:15:39]: testbed apt version: 3.1.14 76s autopkgtest [04:15:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s autopkgtest [04:15:40]: testbed release detected to be: None 76s autopkgtest [04:15:40]: updating testbed package index (apt update) 77s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 77s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB] 77s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB] 77s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB] 77s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB] 77s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B] 77s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 77s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB] 77s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB] 78s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB] 78s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B] 78s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 78s Fetched 5189 kB in 1s (4353 kB/s) 79s Reading package lists... 79s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 81s The following package was automatically installed and is no longer required: 81s libpython3.13 81s Use 'sudo apt autoremove' to remove it. 81s The following NEW packages will be installed: 81s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 81s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 81s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 81s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 81s The following packages will be upgraded: 81s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 81s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 81s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 81s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 81s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 81s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 81s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 81s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 81s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 81s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 81s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 81s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 81s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 81s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 81s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 81s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 81s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 237 MB of archives. 81s After this operation, 339 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 81s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 81s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 81s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 81s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 81s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 81s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 81s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 81s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 81s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 81s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 81s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 81s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 81s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 81s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 81s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 81s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 81s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 81s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 81s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 81s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 81s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 81s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 81s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 81s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 81s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 81s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 81s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 81s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 81s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 81s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 81s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 81s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 81s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 81s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 81s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 81s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 81s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 81s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 81s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 81s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 81s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 81s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 81s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 81s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 81s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 81s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 81s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 81s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 81s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 81s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 81s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 81s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 81s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 81s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 81s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 82s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 82s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 82s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 82s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 82s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 82s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 82s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 82s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 82s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 82s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 82s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 82s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 82s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 82s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 82s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 82s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 82s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 82s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 82s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 82s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 82s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 82s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 85s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 85s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 85s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 85s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 85s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 85s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 85s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 85s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 85s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 85s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 85s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 86s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 86s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 86s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 86s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 86s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 86s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 86s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 86s dpkg-preconfigure: unable to re-open stdin: No such file or directory 86s Fetched 237 MB in 5s (47.4 MB/s) 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 86s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 86s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 86s Setting up debianutils (5.23.2build1) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 86s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 86s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 86s Setting up dash (0.5.12-12ubuntu3) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 86s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 86s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 86s Setting up findutils (4.10.0-3build2) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 86s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 86s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 86s Setting up sed (4.9-2build3) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 86s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 86s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 86s Setting up tar (1.35+dfsg-3.1build2) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 86s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 87s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 87s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 87s Selecting previously unselected package gcc-16-base:amd64. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 87s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 87s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 87s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 87s Preparing to unpack .../libgcc-s1_16-20260208-1ubuntu1_amd64.deb ... 87s Unpacking libgcc-s1:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ... 87s Setting up libgcc-s1:amd64 (16-20260208-1ubuntu1) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 87s Preparing to unpack .../00-libbsd0_0.12.2-2build2_amd64.deb ... 87s Unpacking libbsd0:amd64 (0.12.2-2build2) over (0.12.2-2build1) ... 87s Preparing to unpack .../01-mawk_1.3.4.20260129-1_amd64.deb ... 87s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 87s Preparing to unpack .../02-libstdc++6_16-20260208-1ubuntu1_amd64.deb ... 87s Unpacking libstdc++6:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ... 87s Preparing to unpack .../03-libapt-pkg7.0_3.1.15_amd64.deb ... 87s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 87s Preparing to unpack .../04-apt_3.1.15_amd64.deb ... 87s Unpacking apt (3.1.15) over (3.1.14) ... 87s Preparing to unpack .../05-dbus-system-bus-common_1.16.2-2ubuntu3_all.deb ... 87s Unpacking dbus-system-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../06-dbus-session-bus-common_1.16.2-2ubuntu3_all.deb ... 87s Unpacking dbus-session-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../07-dbus-user-session_1.16.2-2ubuntu3_amd64.deb ... 87s Unpacking dbus-user-session (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../08-dbus-daemon_1.16.2-2ubuntu3_amd64.deb ... 87s Unpacking dbus-daemon (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../09-dbus-bin_1.16.2-2ubuntu3_amd64.deb ... 87s Unpacking dbus-bin (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../10-dbus_1.16.2-2ubuntu3_amd64.deb ... 87s Unpacking dbus (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../11-libdbus-1-3_1.16.2-2ubuntu3_amd64.deb ... 87s Unpacking libdbus-1-3:amd64 (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ... 87s Preparing to unpack .../12-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 87s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 87s Preparing to unpack .../13-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 87s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 87s Preparing to unpack .../14-ethtool_1%3a6.15-3build1_amd64.deb ... 87s Unpacking ethtool (1:6.15-3build1) over (1:6.15-3) ... 87s Preparing to unpack .../15-gir1.2-girepository-3.0_2.87.2-2_amd64.deb ... 87s Unpacking gir1.2-girepository-3.0:amd64 (2.87.2-2) over (2.86.3-4) ... 87s Preparing to unpack .../16-libgirepository-2.0-0_2.87.2-2_amd64.deb ... 87s Unpacking libgirepository-2.0-0:amd64 (2.87.2-2) over (2.86.3-4) ... 87s Preparing to unpack .../17-libatomic1_16-20260208-1ubuntu1_amd64.deb ... 88s Unpacking libatomic1:amd64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ... 88s Preparing to unpack .../18-gir1.2-glib-2.0_2.87.2-2_amd64.deb ... 88s Unpacking gir1.2-glib-2.0:amd64 (2.87.2-2) over (2.86.3-4) ... 88s Preparing to unpack .../19-libglib2.0-0t64_2.87.2-2_amd64.deb ... 88s Unpacking libglib2.0-0t64:amd64 (2.87.2-2) over (2.86.3-4) ... 88s Preparing to unpack .../20-libbpf1_1%3a1.6.2-1build1_amd64.deb ... 88s Unpacking libbpf1:amd64 (1:1.6.2-1build1) over (1:1.6.2-1) ... 88s Preparing to unpack .../21-iptables_1.8.11-2ubuntu3_amd64.deb ... 88s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 88s Preparing to unpack .../22-libip4tc2_1.8.11-2ubuntu3_amd64.deb ... 88s Unpacking libip4tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 88s Preparing to unpack .../23-libip6tc2_1.8.11-2ubuntu3_amd64.deb ... 88s Unpacking libip6tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 88s Preparing to unpack .../24-libnetfilter-conntrack3_1.1.1-1_amd64.deb ... 88s Unpacking libnetfilter-conntrack3:amd64 (1.1.1-1) over (1.1.0-1build1) ... 88s Preparing to unpack .../25-libxtables12_1.8.11-2ubuntu3_amd64.deb ... 88s Unpacking libxtables12:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 88s Preparing to unpack .../26-iproute2_6.18.0-1ubuntu1_amd64.deb ... 88s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 88s Preparing to unpack .../27-less_668-1build1_amd64.deb ... 88s Unpacking less (668-1build1) over (668-1) ... 88s Preparing to unpack .../28-libcryptsetup12_2%3a2.8.0-1ubuntu3_amd64.deb ... 88s Unpacking libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 88s Preparing to unpack .../29-libglib2.0-data_2.87.2-2_all.deb ... 88s Unpacking libglib2.0-data (2.87.2-2) over (2.86.3-4) ... 88s Preparing to unpack .../30-libidn2-0_2.3.8-4build1_amd64.deb ... 88s Unpacking libidn2-0:amd64 (2.3.8-4build1) over (2.3.8-4) ... 88s Preparing to unpack .../31-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 88s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 88s Preparing to unpack .../32-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 88s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 88s Preparing to unpack .../33-python3-markdown-it_3.0.0-3build1_all.deb ... 88s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 88s Preparing to unpack .../34-shared-mime-info_2.4-5build3_amd64.deb ... 88s Unpacking shared-mime-info (2.4-5build3) over (2.4-5build2) ... 88s Preparing to unpack .../35-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 88s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 88s Preparing to unpack .../36-libdrm-common_2.4.131-1_all.deb ... 88s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 89s Preparing to unpack .../37-libdrm2_2.4.131-1_amd64.deb ... 89s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 89s Preparing to unpack .../38-libgdbm6t64_1.26-1build1_amd64.deb ... 89s Unpacking libgdbm6t64:amd64 (1.26-1build1) over (1.26-1) ... 89s Preparing to unpack .../39-libgpm2_1.20.7-12build1_amd64.deb ... 89s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 89s Preparing to unpack .../40-libjansson4_2.14-2build4_amd64.deb ... 89s Unpacking libjansson4:amd64 (2.14-2build4) over (2.14-2build3) ... 89s Preparing to unpack .../41-lsof_4.99.4+dfsg-2build2_amd64.deb ... 89s Unpacking lsof (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ... 89s Preparing to unpack .../42-liblsof0_4.99.4+dfsg-2build2_amd64.deb ... 89s Unpacking liblsof0 (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ... 89s Preparing to unpack .../43-libmaxminddb0_1.12.2-1build2_amd64.deb ... 89s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 89s Preparing to unpack .../44-libpcap0.8t64_1.10.5-2ubuntu3_amd64.deb ... 89s Unpacking libpcap0.8t64:amd64 (1.10.5-2ubuntu3) over (1.10.5-2ubuntu2) ... 89s Preparing to unpack .../45-pciutils_1%3a3.14.0-1build2_amd64.deb ... 89s Unpacking pciutils (1:3.14.0-1build2) over (1:3.14.0-1build1) ... 89s Preparing to unpack .../46-libpci3_1%3a3.14.0-1build2_amd64.deb ... 89s Unpacking libpci3:amd64 (1:3.14.0-1build2) over (1:3.14.0-1build1) ... 89s Preparing to unpack .../47-libsensors-config_1%3a3.6.2-2build1_all.deb ... 89s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 89s Preparing to unpack .../48-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 89s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 89s Preparing to unpack .../49-libusb-1.0-0_2%3a1.0.29-2build1_amd64.deb ... 89s Unpacking libusb-1.0-0:amd64 (2:1.0.29-2build1) over (2:1.0.29-2) ... 89s Preparing to unpack .../50-libxau6_1%3a1.0.11-1build2_amd64.deb ... 89s Unpacking libxau6:amd64 (1:1.0.11-1build2) over (1:1.0.11-1build1) ... 89s Preparing to unpack .../51-libxkbcommon0_1.13.1-1_amd64.deb ... 89s Unpacking libxkbcommon0:amd64 (1.13.1-1) over (1.12.3-1) ... 89s Preparing to unpack .../52-man-db_2.13.1-1build1_amd64.deb ... 89s Unpacking man-db (2.13.1-1build1) over (2.13.1-1) ... 89s Preparing to unpack .../53-tcpdump_4.99.5-2ubuntu3_amd64.deb ... 89s Unpacking tcpdump (4.99.5-2ubuntu3) over (4.99.5-2ubuntu2) ... 89s Preparing to unpack .../54-wget_1.25.0-2ubuntu4_amd64.deb ... 89s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 89s Preparing to unpack .../55-ubuntu-standard_1.564_amd64.deb ... 89s Unpacking ubuntu-standard (1.564) over (1.563) ... 89s Preparing to unpack .../56-3cpio_0.14.0-1ubuntu1_amd64.deb ... 89s Unpacking 3cpio (0.14.0-1ubuntu1) over (0.13.1-1ubuntu1) ... 89s Preparing to unpack .../57-bpftool_7.7.0+6.19.0-3.3_amd64.deb ... 89s Unpacking bpftool (7.7.0+6.19.0-3.3) over (7.7.0+6.18.0-9.9) ... 89s Preparing to unpack .../58-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 89s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 89s Preparing to unpack .../59-cryptsetup-bin_2%3a2.8.0-1ubuntu3_amd64.deb ... 89s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 89s Preparing to unpack .../60-dracut-install_109-11ubuntu1_amd64.deb ... 89s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 89s Preparing to unpack .../61-hwdata_0.394-1build1_all.deb ... 89s Unpacking hwdata (0.394-1build1) over (0.394-1) ... 89s Preparing to unpack .../62-pnp.ids_0.394-1build1_all.deb ... 89s Unpacking pnp.ids (0.394-1build1) over (0.394-1) ... 89s Preparing to unpack .../63-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 89s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 89s Preparing to unpack .../64-libevent-core-2.1-7t64_2.1.12-stable-10build2_amd64.deb ... 89s Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) over (2.1.12-stable-10build1) ... 89s Preparing to unpack .../65-libgdbm-compat4t64_1.26-1build1_amd64.deb ... 89s Unpacking libgdbm-compat4t64:amd64 (1.26-1build1) over (1.26-1) ... 89s Preparing to unpack .../66-libgudev-1.0-0_1%3a238-7build1_amd64.deb ... 89s Unpacking libgudev-1.0-0:amd64 (1:238-7build1) over (1:238-7) ... 90s Preparing to unpack .../67-libnpth0t64_1.8-3build1_amd64.deb ... 90s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 90s Preparing to unpack .../68-libonig5_6.9.10-1build1_amd64.deb ... 90s Unpacking libonig5:amd64 (6.9.10-1build1) over (6.9.10-1) ... 90s Selecting previously unselected package libpython3.14-minimal:amd64. 90s Preparing to unpack .../69-libpython3.14-minimal_3.14.2-1_amd64.deb ... 90s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 90s Selecting previously unselected package libpython3.14-stdlib:amd64. 90s Preparing to unpack .../70-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 90s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 90s Selecting previously unselected package libpython3.14:amd64. 90s Preparing to unpack .../71-libpython3.14_3.14.2-1_amd64.deb ... 90s Unpacking libpython3.14:amd64 (3.14.2-1) ... 90s Preparing to unpack .../72-libwrap0_7.6.q-36build2_amd64.deb ... 90s Unpacking libwrap0:amd64 (7.6.q-36build2) over (7.6.q-36build1) ... 90s Selecting previously unselected package linux-modules-6.19.0-3-generic. 90s Preparing to unpack .../73-linux-modules-6.19.0-3-generic_6.19.0-3.3_amd64.deb ... 90s Unpacking linux-modules-6.19.0-3-generic (6.19.0-3.3) ... 91s Selecting previously unselected package linux-image-6.19.0-3-generic. 91s Preparing to unpack .../74-linux-image-6.19.0-3-generic_6.19.0-3.3+1_amd64.deb ... 91s Unpacking linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 91s Preparing to unpack .../75-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 91s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 91s Preparing to unpack .../76-linux-generic_6.19.0-3.3_amd64.deb ... 91s Unpacking linux-generic (6.19.0-3.3) over (6.18.0-9.9+1) ... 91s Preparing to unpack .../77-linux-image-generic_6.19.0-3.3_amd64.deb ... 91s Unpacking linux-image-generic (6.19.0-3.3) over (6.18.0-9.9+1) ... 91s Preparing to unpack .../78-linux-virtual_6.19.0-3.3_amd64.deb ... 91s Unpacking linux-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ... 91s Preparing to unpack .../79-linux-image-virtual_6.19.0-3.3_amd64.deb ... 91s Unpacking linux-image-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ... 91s Preparing to unpack .../80-linux-headers-virtual_6.19.0-3.3_amd64.deb ... 91s Unpacking linux-headers-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ... 91s Selecting previously unselected package linux-headers-6.19.0-3. 91s Preparing to unpack .../81-linux-headers-6.19.0-3_6.19.0-3.3_all.deb ... 91s Unpacking linux-headers-6.19.0-3 (6.19.0-3.3) ... 92s Selecting previously unselected package linux-headers-6.19.0-3-generic. 92s Preparing to unpack .../82-linux-headers-6.19.0-3-generic_6.19.0-3.3_amd64.deb ... 92s Unpacking linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 92s Preparing to unpack .../83-linux-headers-generic_6.19.0-3.3_amd64.deb ... 92s Unpacking linux-headers-generic (6.19.0-3.3) over (6.18.0-9.9+1) ... 93s Preparing to unpack .../84-linux-perf_6.19.0-3.3_amd64.deb ... 93s Unpacking linux-perf (6.19.0-3.3) over (6.18.0-9.9) ... 93s Preparing to unpack .../85-linux-tools-common_6.19.0-3.3_all.deb ... 93s Unpacking linux-tools-common (6.19.0-3.3) over (6.18.0-9.9) ... 93s Selecting previously unselected package linux-tools-6.19.0-3. 93s Preparing to unpack .../86-linux-tools-6.19.0-3_6.19.0-3.3_amd64.deb ... 93s Unpacking linux-tools-6.19.0-3 (6.19.0-3.3) ... 93s Selecting previously unselected package linux-tools-6.19.0-3-generic. 93s Preparing to unpack .../87-linux-tools-6.19.0-3-generic_6.19.0-3.3_amd64.deb ... 93s Unpacking linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 93s Preparing to unpack .../88-patch_2.8-2build1_amd64.deb ... 93s Unpacking patch (2.8-2build1) over (2.8-2) ... 93s Preparing to unpack .../89-pollinate_4.33-4ubuntu5_all.deb ... 93s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 93s Preparing to unpack .../90-python3-referencing_0.36.2-1ubuntu2_all.deb ... 93s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 93s Preparing to unpack .../91-ubuntu-kernel-accessories_1.564_amd64.deb ... 93s Unpacking ubuntu-kernel-accessories (1.564) over (1.563) ... 93s Setting up libip4tc2:amd64 (1.8.11-2ubuntu3) ... 93s Setting up 3cpio (0.14.0-1ubuntu1) ... 93s Setting up libxau6:amd64 (1:1.0.11-1build2) ... 93s Setting up libnpth0t64:amd64 (1.8-3build1) ... 93s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 93s Setting up ubuntu-kernel-accessories (1.564) ... 93s Setting up libgpm2:amd64 (1.20.7-12build1) ... 93s Setting up libgdbm6t64:amd64 (1.26-1build1) ... 93s Setting up linux-modules-6.19.0-3-generic (6.19.0-3.3) ... 94s Setting up libgdbm-compat4t64:amd64 (1.26-1build1) ... 94s Setting up bpftool (7.7.0+6.19.0-3.3) ... 94s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 94s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 94s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 94s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 94s Setting up libsensors-config (1:3.6.2-2build1) ... 94s Setting up less (668-1build1) ... 94s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 94s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 94s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 94s amd64-microcode: microcode will be updated at next boot 94s Setting up man-db (2.13.1-1build1) ... 94s Updating database of manual pages ... 96s man-db.service is a disabled or a static unit not running, not starting it. 96s Setting up libjansson4:amd64 (2.14-2build4) ... 96s Setting up libglib2.0-data (2.87.2-2) ... 96s Setting up pollinate (4.33-4ubuntu5) ... 106s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 106s Setting up libwrap0:amd64 (7.6.q-36build2) ... 106s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 107s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 107s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 107s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 107s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 107s Setting up patch (2.8-2build1) ... 107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 107s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 107s Setting up lsof (4.99.4+dfsg-2build2) ... 107s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 107s Setting up dracut-install (109-11ubuntu1) ... 107s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 107s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 107s Setting up pnp.ids (0.394-1build1) ... 107s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 107s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 107s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 107s Setting up mawk (1.3.4.20260129-1) ... 107s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 107s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 107s Setting up linux-image-virtual (6.19.0-3.3) ... 107s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 107s Setting up libbsd0:amd64 (0.12.2-2build2) ... 107s Setting up libdrm-common (2.4.131-1) ... 107s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 107s Setting up dbus-bin (1.16.2-2ubuntu3) ... 107s Setting up libonig5:amd64 (6.9.10-1build1) ... 107s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 107s Setting up ethtool (1:6.15-3build1) ... 107s Setting up python3-referencing (0.36.2-1ubuntu2) ... 108s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 108s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 108s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 108s Setting up tcpdump (4.99.5-2ubuntu3) ... 108s Setting up linux-image-generic (6.19.0-3.3) ... 108s Setting up wget (1.25.0-2ubuntu4) ... 108s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 108s Setting up iptables (1.8.11-2ubuntu3) ... 108s Setting up iproute2 (6.18.0-1ubuntu1) ... 108s Setting up linux-headers-generic (6.19.0-3.3) ... 108s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 108s Setting up hwdata (0.394-1build1) ... 108s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 108s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 108s No schema files found: doing nothing. 108s Setting up dbus (1.16.2-2ubuntu3) ... 108s A reboot is required to replace the running dbus-daemon. 108s Please reboot the system when convenient. 108s Setting up shared-mime-info (2.4-5build3) ... 109s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 109s Setting up pciutils (1:3.14.0-1build2) ... 109s Setting up python3-markdown-it (3.0.0-3build1) ... 109s Setting up libdrm2:amd64 (2.4.131-1) ... 109s Setting up libpython3.14:amd64 (3.14.2-1) ... 109s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 109s Setting up linux-tools-common (6.19.0-3.3) ... 109s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 109s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 109s Setting up apt (3.1.15) ... 109s Setting up linux-headers-virtual (6.19.0-3.3) ... 109s Setting up linux-generic (6.19.0-3.3) ... 109s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 109s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 109s Setting up ubuntu-standard (1.564) ... 109s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 109s Setting up linux-virtual (6.19.0-3.3) ... 109s Setting up linux-perf (6.19.0-3.3) ... 109s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 109s Processing triggers for debianutils (5.23.2build1) ... 109s Processing triggers for install-info (7.2-5) ... 109s Processing triggers for initramfs-tools (0.150ubuntu7) ... 109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 114s Processing triggers for libc-bin (2.42-2ubuntu4) ... 114s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 114s /etc/kernel/postinst.d/initramfs-tools: 114s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 118s /etc/kernel/postinst.d/zz-update-grub: 118s Sourcing file `/etc/default/grub' 118s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 118s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 118s Generating grub configuration file ... 118s Found linux image: /boot/vmlinuz-6.19.0-3-generic 118s Found initrd image: /boot/initrd.img-6.19.0-3-generic 118s Found linux image: /boot/vmlinuz-6.18.0-9-generic 118s Found initrd image: /boot/initrd.img-6.18.0-9-generic 118s Warning: os-prober will not be executed to detect other bootable partitions. 118s Systems on them will not be added to the GRUB boot configuration. 118s Check GRUB_DISABLE_OS_PROBER documentation entry. 118s Adding boot menu entry for UEFI Firmware Settings ... 118s done 118s autopkgtest [04:16:22]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s The following package was automatically installed and is no longer required: 119s libpython3.13 119s Use 'sudo apt autoremove' to remove it. 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Solving dependencies... 119s The following packages will be REMOVED: 119s libpython3.13* 120s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 120s After this operation, 7599 kB disk space will be freed. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 120s Removing libpython3.13:amd64 (3.13.11-1) ... 120s Processing triggers for libc-bin (2.42-2ubuntu4) ... 120s autopkgtest [04:16:24]: rebooting testbed after setup commands that affected boot 148s autopkgtest [04:16:52]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 150s autopkgtest [04:16:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-isoformswitchanalyzer 151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-isoformswitchanalyzer 2.6.0+ds-2 (dsc) [2902 B] 151s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-isoformswitchanalyzer 2.6.0+ds-2 (tar) [3122 kB] 151s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-isoformswitchanalyzer 2.6.0+ds-2 (diff) [3332 B] 152s gpgv: Signature made Tue Jan 14 10:33:41 2025 UTC 152s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 152s gpgv: issuer "crusoe@debian.org" 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./r-bioc-isoformswitchanalyzer_2.6.0+ds-2.dsc: no acceptable signature found 152s autopkgtest [04:16:56]: testing package r-bioc-isoformswitchanalyzer version 2.6.0+ds-2 152s autopkgtest [04:16:56]: build not needed 156s autopkgtest [04:17:00]: test pkg-r-autopkgtest: preparing testbed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Solving dependencies... 157s The following NEW packages will be installed: 157s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 157s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 157s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 157s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 157s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 157s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 157s javascript-common libasan8 libblas-dev libblas3 libboost-dev 157s libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 157s libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 157s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 157s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 157s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 157s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 157s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 157s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 157s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 157s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 157s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 157s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 157s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 157s libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev 157s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 157s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 157s libxt6t64 libzstd-dev linux-libc-dev node-bootstrap-sass node-html5shiv 157s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 157s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 157s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase 157s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 157s r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 157s r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger 157s r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 157s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 157s r-bioc-genomicranges r-bioc-iranges r-bioc-isoformswitchanalyzer 157s r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-pfamanalyzer 157s r-bioc-protgenerics r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools 157s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-saturn 157s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-sva r-bioc-txdbmaker 157s r-bioc-tximeta r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector 157s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 157s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 157s r-cran-boot r-cran-bslib r-cran-cachem r-cran-cli r-cran-clipr 157s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 157s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-evaluate 157s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 157s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 157s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 157s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 157s r-cran-httr2 r-cran-hwriter r-cran-isoband r-cran-jquerylib r-cran-jsonlite 157s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 157s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfdr r-cran-locfit 157s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 157s r-cran-mime r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar 157s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png 157s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 157s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 157s r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson 157s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-s7 r-cran-sass 157s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 157s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 157s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 157s r-cran-vctrs r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr 157s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 157s unzip x11-common xdg-utils zip zlib1g-dev 157s 0 upgraded, 299 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 378 MB of archives. 157s After this operation, 1205 MB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 157s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 157s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 157s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 157s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 157s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 157s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 157s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 157s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 157s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 157s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 157s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 157s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 157s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 157s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 157s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 157s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 158s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 158s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 158s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 158s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 158s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 158s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 158s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 158s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 158s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 159s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 159s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 159s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 159s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 159s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 159s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 159s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 159s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 159s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 159s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 159s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 159s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 159s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 159s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 159s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 159s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 159s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 159s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 159s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 159s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 159s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 159s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 159s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 159s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 159s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB] 160s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B] 160s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 160s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 160s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 160s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 160s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 160s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 160s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 160s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 160s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 160s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 160s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 160s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 160s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 160s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 160s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 160s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 160s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 160s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 160s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 160s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 160s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 160s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 160s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 160s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 160s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 160s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 160s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 160s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 160s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 160s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 160s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 160s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 160s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 160s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 160s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 160s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 160s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 160s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 160s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 160s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 160s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 160s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 160s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 160s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 160s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 160s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 160s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 160s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 160s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 160s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 160s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 160s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 160s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 160s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 160s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 160s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 160s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 160s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 160s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 160s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 160s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 160s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 160s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 160s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 160s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 160s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 160s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 160s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 161s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 161s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 161s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 161s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 161s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 162s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 162s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 162s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 162s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 162s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 162s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 162s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 162s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 162s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 162s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 162s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 162s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 163s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB] 163s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 163s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 163s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 163s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 163s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 163s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB] 163s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 163s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 163s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 163s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 163s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 163s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 163s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 163s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 163s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 163s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 163s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 163s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 163s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 163s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 163s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 163s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 163s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 163s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 163s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 163s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 163s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 164s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 164s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 164s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 164s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 164s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB] 164s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 164s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 164s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 164s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 164s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 164s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 164s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 164s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 164s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 164s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 164s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 164s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 164s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 164s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 164s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 164s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 164s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 164s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 165s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB] 165s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 165s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 165s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 165s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 165s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 165s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 165s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 165s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 165s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 165s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 165s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 165s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 165s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 165s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 165s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 165s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 165s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB] 165s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 165s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 165s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB] 165s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 165s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB] 165s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 165s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 165s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 165s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 165s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 165s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 165s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 165s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 165s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 165s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 165s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB] 165s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 165s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 165s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 165s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 165s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 165s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 165s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rtracklayer amd64 1.66.0-3 [5225 kB] 165s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 166s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 166s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 166s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 166s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB] 166s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 166s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 166s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 166s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 166s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 166s Get:240 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 166s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 166s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 166s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 166s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB] 166s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 166s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 166s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 166s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB] 166s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 166s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genefilter amd64 1.88.0-2 [1243 kB] 166s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-dexseq all 1.52.0+dfsg-2 [453 kB] 166s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 167s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 167s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 167s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 167s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 167s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfdr all 1.1-8-2 [306 kB] 167s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 167s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-boot all 1.3-32-1 [636 kB] 167s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-saturn all 1.14.0+dfsg-2 [2955 kB] 167s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 167s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 167s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sva amd64 3.54.0-2 [466 kB] 167s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clipr all 0.8.0-1build1 [54.0 kB] 167s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tzdb amd64 0.5.0-1 [538 kB] 167s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vroom amd64 1.7.0-1 [910 kB] 167s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-readr amd64 2.1.6-1 [818 kB] 167s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-pfamanalyzer all 1.6.0+dfsg-2 [33.0 kB] 167s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 167s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB] 168s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 168s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-venndiagram all 1.7.3-1 [266 kB] 168s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-tximport all 1.34.0+dfsg-2 [90.4 kB] 168s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-txdbmaker all 1.2.1+ds-2 [875 kB] 168s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-tximeta all 1.24.0+dfsg-2 [436 kB] 168s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-pwalign amd64 1.2.0-3 [757 kB] 168s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-isoformswitchanalyzer amd64 2.6.0+ds-2 [4115 kB] 168s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 168s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 168s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 168s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 168s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 168s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 168s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 168s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 168s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 168s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 168s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 168s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 168s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 168s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 168s Get:292 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 169s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 169s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 169s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 169s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 169s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 169s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 169s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 169s Preconfiguring packages ... 169s Fetched 378 MB in 12s (30.9 MB/s) 169s Selecting previously unselected package libc-dev-bin. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 169s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 169s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 169s Selecting previously unselected package linux-libc-dev:amd64. 169s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ... 169s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 169s Selecting previously unselected package libcrypt-dev:amd64. 169s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 169s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 169s Selecting previously unselected package rpcsvc-proto. 169s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 169s Unpacking rpcsvc-proto (1.4.3-1build1) ... 169s Selecting previously unselected package libc6-dev:amd64. 169s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ... 169s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 170s Selecting previously unselected package libisl23:amd64. 170s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ... 170s Unpacking libisl23:amd64 (0.27-1build1) ... 170s Selecting previously unselected package libmpc3:amd64. 170s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ... 170s Unpacking libmpc3:amd64 (1.3.1-2) ... 170s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 170s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 170s Selecting previously unselected package cpp-15. 170s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 170s Selecting previously unselected package cpp-x86-64-linux-gnu. 170s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 170s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 170s Selecting previously unselected package cpp. 170s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 170s Unpacking cpp (4:15.2.0-4ubuntu1) ... 170s Selecting previously unselected package libcc1-0:amd64. 170s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libgomp1:amd64. 170s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libitm1:amd64. 170s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libasan8:amd64. 170s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package liblsan0:amd64. 170s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libtsan2:amd64. 170s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libubsan1:amd64. 170s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libhwasan0:amd64. 170s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libquadmath0:amd64. 170s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 170s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 170s Selecting previously unselected package libgcc-15-dev:amd64. 170s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 170s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 170s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 170s Selecting previously unselected package gcc-15. 170s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 170s Selecting previously unselected package gcc-x86-64-linux-gnu. 170s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 170s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 170s Selecting previously unselected package gcc. 170s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 170s Unpacking gcc (4:15.2.0-4ubuntu1) ... 170s Selecting previously unselected package libstdc++-15-dev:amd64. 170s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 170s Selecting previously unselected package g++-15-x86-64-linux-gnu. 170s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 170s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 171s Selecting previously unselected package g++-15. 171s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ... 171s Unpacking g++-15 (15.2.0-12ubuntu1) ... 171s Selecting previously unselected package g++-x86-64-linux-gnu. 171s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 171s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 171s Selecting previously unselected package g++. 171s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 171s Unpacking g++ (4:15.2.0-4ubuntu1) ... 171s Selecting previously unselected package build-essential. 171s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ... 171s Unpacking build-essential (12.12ubuntu2) ... 171s Selecting previously unselected package dctrl-tools. 171s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ... 171s Unpacking dctrl-tools (2.24-3build4) ... 171s Selecting previously unselected package fonts-dejavu-mono. 171s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 171s Unpacking fonts-dejavu-mono (2.37-8build1) ... 171s Selecting previously unselected package fonts-dejavu-core. 171s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ... 171s Unpacking fonts-dejavu-core (2.37-8build1) ... 171s Selecting previously unselected package fontconfig-config. 171s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 171s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 171s Selecting previously unselected package libfontconfig1:amd64. 171s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 171s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 171s Selecting previously unselected package fontconfig. 171s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 171s Unpacking fontconfig (2.17.1-3ubuntu1) ... 171s Selecting previously unselected package fonts-font-awesome. 171s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 171s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 171s Selecting previously unselected package fonts-glyphicons-halflings. 171s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 171s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 171s Selecting previously unselected package fonts-mathjax. 171s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 171s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 171s Selecting previously unselected package libgfortran5:amd64. 171s Preparing to unpack .../040-libgfortran5_16-20260208-1ubuntu1_amd64.deb ... 171s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ... 171s Selecting previously unselected package libgfortran-15-dev:amd64. 171s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 171s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 171s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 171s Preparing to unpack .../042-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 171s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 171s Selecting previously unselected package gfortran-15. 171s Preparing to unpack .../043-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 171s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 171s Selecting previously unselected package gfortran-x86-64-linux-gnu. 171s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 171s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 171s Selecting previously unselected package gfortran. 171s Preparing to unpack .../045-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 171s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 171s Selecting previously unselected package icu-devtools. 171s Preparing to unpack .../046-icu-devtools_78.2-1ubuntu1_amd64.deb ... 171s Unpacking icu-devtools (78.2-1ubuntu1) ... 171s Selecting previously unselected package javascript-common. 171s Preparing to unpack .../047-javascript-common_12+nmu1build1_all.deb ... 171s Unpacking javascript-common (12+nmu1build1) ... 171s Selecting previously unselected package libblas3:amd64. 171s Preparing to unpack .../048-libblas3_3.12.1-7ubuntu1_amd64.deb ... 171s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 171s Selecting previously unselected package libblas-dev:amd64. 171s Preparing to unpack .../049-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 171s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 171s Selecting previously unselected package libboost1.90-dev:amd64. 171s Preparing to unpack .../050-libboost1.90-dev_1.90.0-2ubuntu1_amd64.deb ... 171s Unpacking libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ... 172s Selecting previously unselected package libboost-dev:amd64. 172s Preparing to unpack .../051-libboost-dev_1.90.0.0ubuntu3_amd64.deb ... 172s Unpacking libboost-dev:amd64 (1.90.0.0ubuntu3) ... 172s Selecting previously unselected package libbz2-dev:amd64. 172s Preparing to unpack .../052-libbz2-dev_1.0.8-6build2_amd64.deb ... 172s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 172s Selecting previously unselected package libpixman-1-0:amd64. 172s Preparing to unpack .../053-libpixman-1-0_0.46.4-1_amd64.deb ... 172s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 172s Selecting previously unselected package libxcb-render0:amd64. 172s Preparing to unpack .../054-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 172s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 172s Selecting previously unselected package libxcb-shm0:amd64. 172s Preparing to unpack .../055-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 172s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 172s Selecting previously unselected package libxrender1:amd64. 172s Preparing to unpack .../056-libxrender1_1%3a0.9.12-1_amd64.deb ... 172s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 172s Selecting previously unselected package libcairo2:amd64. 172s Preparing to unpack .../057-libcairo2_1.18.4-3_amd64.deb ... 172s Unpacking libcairo2:amd64 (1.18.4-3) ... 172s Selecting previously unselected package libdatrie1:amd64. 172s Preparing to unpack .../058-libdatrie1_0.2.14-1_amd64.deb ... 172s Unpacking libdatrie1:amd64 (0.2.14-1) ... 172s Selecting previously unselected package libdeflate0:amd64. 172s Preparing to unpack .../059-libdeflate0_1.23-2build1_amd64.deb ... 172s Unpacking libdeflate0:amd64 (1.23-2build1) ... 172s Selecting previously unselected package libdeflate-dev:amd64. 172s Preparing to unpack .../060-libdeflate-dev_1.23-2build1_amd64.deb ... 172s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 172s Selecting previously unselected package libgraphite2-3:amd64. 172s Preparing to unpack .../061-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 172s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 172s Selecting previously unselected package libharfbuzz0b:amd64. 172s Preparing to unpack .../062-libharfbuzz0b_12.3.2-1_amd64.deb ... 172s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 172s Selecting previously unselected package x11-common. 172s Preparing to unpack .../063-x11-common_1%3a7.7+24ubuntu1_all.deb ... 172s Unpacking x11-common (1:7.7+24ubuntu1) ... 172s Selecting previously unselected package libice6:amd64. 172s Preparing to unpack .../064-libice6_2%3a1.1.1-1build1_amd64.deb ... 172s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 172s Selecting previously unselected package libicu-dev:amd64. 172s Preparing to unpack .../065-libicu-dev_78.2-1ubuntu1_amd64.deb ... 172s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 172s Selecting previously unselected package libjpeg-turbo8:amd64. 172s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 172s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 172s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 172s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ... 172s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 172s Selecting previously unselected package libjpeg8:amd64. 173s Preparing to unpack .../068-libjpeg8_8c-2ubuntu12_amd64.deb ... 173s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 173s Selecting previously unselected package libjpeg8-dev:amd64. 173s Preparing to unpack .../069-libjpeg8-dev_8c-2ubuntu12_amd64.deb ... 173s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ... 173s Selecting previously unselected package libjpeg-dev:amd64. 173s Preparing to unpack .../070-libjpeg-dev_8c-2ubuntu12_amd64.deb ... 173s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ... 173s Selecting previously unselected package libjs-bootstrap. 173s Preparing to unpack .../071-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 173s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 173s Selecting previously unselected package libjs-popper.js. 173s Preparing to unpack .../072-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 173s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 173s Selecting previously unselected package libjs-bootstrap4. 173s Preparing to unpack .../073-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 173s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 173s Selecting previously unselected package libjs-d3. 173s Preparing to unpack .../074-libjs-d3_3.5.17-4build1_all.deb ... 173s Unpacking libjs-d3 (3.5.17-4build1) ... 173s Selecting previously unselected package libjs-es5-shim. 173s Preparing to unpack .../075-libjs-es5-shim_4.6.7-2_all.deb ... 173s Unpacking libjs-es5-shim (4.6.7-2) ... 173s Selecting previously unselected package libjs-highlight.js. 173s Preparing to unpack .../076-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 173s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 173s Selecting previously unselected package libjs-jquery. 173s Preparing to unpack .../077-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 173s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 173s Selecting previously unselected package libjs-jquery-datatables. 173s Preparing to unpack .../078-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 173s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 173s Selecting previously unselected package libjs-sifter.js. 173s Preparing to unpack .../079-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 173s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 173s Selecting previously unselected package libjs-microplugin.js. 173s Preparing to unpack .../080-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ... 173s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 173s Selecting previously unselected package libjs-jquery-selectize.js. 173s Preparing to unpack .../081-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 173s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 173s Selecting previously unselected package libjs-jquery-ui. 173s Preparing to unpack .../082-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 173s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 173s Selecting previously unselected package libjs-json. 173s Preparing to unpack .../083-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 173s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 173s Selecting previously unselected package libjs-prettify. 173s Preparing to unpack .../084-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 173s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 173s Selecting previously unselected package liblapack3:amd64. 173s Preparing to unpack .../085-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 173s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 173s Selecting previously unselected package liblapack-dev:amd64. 173s Preparing to unpack .../086-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 173s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 173s Selecting previously unselected package liblerc4:amd64. 173s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 173s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 173s Selecting previously unselected package liblua5.4-0:amd64. 173s Preparing to unpack .../088-liblua5.4-0_5.4.8-1_amd64.deb ... 173s Unpacking liblua5.4-0:amd64 (5.4.8-1) ... 173s Selecting previously unselected package libncurses-dev:amd64. 173s Preparing to unpack .../089-libncurses-dev_6.6+20251231-1_amd64.deb ... 173s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 173s Selecting previously unselected package libthai-data. 173s Preparing to unpack .../090-libthai-data_0.1.30-1_all.deb ... 173s Unpacking libthai-data (0.1.30-1) ... 173s Selecting previously unselected package libthai0:amd64. 173s Preparing to unpack .../091-libthai0_0.1.30-1_amd64.deb ... 173s Unpacking libthai0:amd64 (0.1.30-1) ... 173s Selecting previously unselected package libpango-1.0-0:amd64. 173s Preparing to unpack .../092-libpango-1.0-0_1.57.0-1_amd64.deb ... 173s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ... 173s Selecting previously unselected package libpangoft2-1.0-0:amd64. 173s Preparing to unpack .../093-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 173s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 173s Selecting previously unselected package libpangocairo-1.0-0:amd64. 173s Preparing to unpack .../094-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 173s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 173s Selecting previously unselected package libpaper2:amd64. 173s Preparing to unpack .../095-libpaper2_2.2.5-0.3build1_amd64.deb ... 173s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 173s Selecting previously unselected package libpaper-utils. 173s Preparing to unpack .../096-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 173s Unpacking libpaper-utils (2.2.5-0.3build1) ... 173s Selecting previously unselected package libpcre2-16-0:amd64. 173s Preparing to unpack .../097-libpcre2-16-0_10.46-1_amd64.deb ... 173s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 173s Selecting previously unselected package libpcre2-32-0:amd64. 173s Preparing to unpack .../098-libpcre2-32-0_10.46-1_amd64.deb ... 173s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 173s Selecting previously unselected package libpcre2-posix3:amd64. 173s Preparing to unpack .../099-libpcre2-posix3_10.46-1_amd64.deb ... 173s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 173s Selecting previously unselected package libpcre2-dev:amd64. 173s Preparing to unpack .../100-libpcre2-dev_10.46-1_amd64.deb ... 173s Unpacking libpcre2-dev:amd64 (10.46-1) ... 173s Selecting previously unselected package libpkgconf3:amd64. 173s Preparing to unpack .../101-libpkgconf3_1.8.1-4build1_amd64.deb ... 173s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 173s Selecting previously unselected package zlib1g-dev:amd64. 173s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 173s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 173s Selecting previously unselected package libpng-dev:amd64. 173s Preparing to unpack .../103-libpng-dev_1.6.54-1_amd64.deb ... 173s Unpacking libpng-dev:amd64 (1.6.54-1) ... 173s Selecting previously unselected package libreadline-dev:amd64. 173s Preparing to unpack .../104-libreadline-dev_8.3-3_amd64.deb ... 173s Unpacking libreadline-dev:amd64 (8.3-3) ... 173s Selecting previously unselected package libsharpyuv0:amd64. 173s Preparing to unpack .../105-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 173s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 173s Selecting previously unselected package libsm6:amd64. 173s Preparing to unpack .../106-libsm6_2%3a1.2.6-1build1_amd64.deb ... 173s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 173s Selecting previously unselected package libtcl8.6:amd64. 173s Preparing to unpack .../107-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 173s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 173s Selecting previously unselected package libjbig0:amd64. 173s Preparing to unpack .../108-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 173s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 173s Selecting previously unselected package libwebp7:amd64. 173s Preparing to unpack .../109-libwebp7_1.5.0-0.1build1_amd64.deb ... 173s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 173s Selecting previously unselected package libtiff6:amd64. 173s Preparing to unpack .../110-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 173s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 173s Selecting previously unselected package libxft2:amd64. 173s Preparing to unpack .../111-libxft2_2.3.6-1build2_amd64.deb ... 173s Unpacking libxft2:amd64 (2.3.6-1build2) ... 174s Selecting previously unselected package libxss1:amd64. 174s Preparing to unpack .../112-libxss1_1%3a1.2.3-1build4_amd64.deb ... 174s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 174s Selecting previously unselected package libtk8.6:amd64. 174s Preparing to unpack .../113-libtk8.6_8.6.17-1_amd64.deb ... 174s Unpacking libtk8.6:amd64 (8.6.17-1) ... 174s Selecting previously unselected package libxt6t64:amd64. 174s Preparing to unpack .../114-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 174s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 174s Selecting previously unselected package libzstd-dev:amd64. 174s Preparing to unpack .../115-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 174s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 174s Selecting previously unselected package node-bootstrap-sass. 174s Preparing to unpack .../116-node-bootstrap-sass_3.4.3-2_all.deb ... 174s Unpacking node-bootstrap-sass (3.4.3-2) ... 174s Selecting previously unselected package node-html5shiv. 174s Preparing to unpack .../117-node-html5shiv_3.7.3+dfsg-5_all.deb ... 174s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 174s Selecting previously unselected package node-normalize.css. 174s Preparing to unpack .../118-node-normalize.css_8.0.1-5.1_all.deb ... 174s Unpacking node-normalize.css (8.0.1-5.1) ... 174s Selecting previously unselected package pandoc-data. 174s Preparing to unpack .../119-pandoc-data_3.1.11.1-3build1_all.deb ... 174s Unpacking pandoc-data (3.1.11.1-3build1) ... 174s Selecting previously unselected package pandoc. 174s Preparing to unpack .../120-pandoc_3.1.11.1+ds-4_amd64.deb ... 174s Unpacking pandoc (3.1.11.1+ds-4) ... 174s Selecting previously unselected package zip. 174s Preparing to unpack .../121-zip_3.0-15ubuntu3_amd64.deb ... 174s Unpacking zip (3.0-15ubuntu3) ... 174s Selecting previously unselected package unzip. 174s Preparing to unpack .../122-unzip_6.0-29ubuntu1_amd64.deb ... 174s Unpacking unzip (6.0-29ubuntu1) ... 174s Selecting previously unselected package xdg-utils. 174s Preparing to unpack .../123-xdg-utils_1.2.1-2ubuntu2_all.deb ... 174s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 174s Selecting previously unselected package r-base-core. 174s Preparing to unpack .../124-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 174s Unpacking r-base-core (4.5.2-1ubuntu2) ... 174s Selecting previously unselected package liblzma-dev:amd64. 174s Preparing to unpack .../125-liblzma-dev_5.8.2-2_amd64.deb ... 174s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 174s Selecting previously unselected package pkgconf-bin. 174s Preparing to unpack .../126-pkgconf-bin_1.8.1-4build1_amd64.deb ... 174s Unpacking pkgconf-bin (1.8.1-4build1) ... 174s Selecting previously unselected package pkgconf:amd64. 174s Preparing to unpack .../127-pkgconf_1.8.1-4build1_amd64.deb ... 174s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 175s Selecting previously unselected package libtirpc-dev:amd64. 175s Preparing to unpack .../128-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 175s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 175s Selecting previously unselected package r-base-dev. 175s Preparing to unpack .../129-r-base-dev_4.5.2-1ubuntu2_all.deb ... 175s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 175s Selecting previously unselected package pkg-r-autopkgtest. 175s Preparing to unpack .../130-pkg-r-autopkgtest_20250812_all.deb ... 175s Unpacking pkg-r-autopkgtest (20250812) ... 175s Selecting previously unselected package r-bioc-biocgenerics. 175s Preparing to unpack .../131-r-bioc-biocgenerics_0.52.0-2_all.deb ... 175s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 175s Selecting previously unselected package r-bioc-biobase. 175s Preparing to unpack .../132-r-bioc-biobase_2.66.0-2_amd64.deb ... 175s Unpacking r-bioc-biobase (2.66.0-2) ... 175s Selecting previously unselected package r-bioc-s4vectors. 175s Preparing to unpack .../133-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 175s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 175s Selecting previously unselected package r-bioc-iranges. 175s Preparing to unpack .../134-r-bioc-iranges_2.40.1-3_amd64.deb ... 175s Unpacking r-bioc-iranges (2.40.1-3) ... 175s Selecting previously unselected package r-cran-dbi. 175s Preparing to unpack .../135-r-cran-dbi_1.2.3-1build1_all.deb ... 175s Unpacking r-cran-dbi (1.2.3-1build1) ... 175s Selecting previously unselected package r-cran-bit. 175s Preparing to unpack .../136-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 175s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-bit64. 175s Preparing to unpack .../137-r-cran-bit64_4.6.0-1-4_amd64.deb ... 175s Unpacking r-cran-bit64 (4.6.0-1-4) ... 175s Selecting previously unselected package r-cran-rlang. 175s Preparing to unpack .../138-r-cran-rlang_1.1.5-3_amd64.deb ... 175s Unpacking r-cran-rlang (1.1.5-3) ... 175s Selecting previously unselected package r-cran-cli. 175s Preparing to unpack .../139-r-cran-cli_3.6.4-1_amd64.deb ... 175s Unpacking r-cran-cli (3.6.4-1) ... 175s Selecting previously unselected package r-cran-glue. 175s Preparing to unpack .../140-r-cran-glue_1.8.0-1_amd64.deb ... 175s Unpacking r-cran-glue (1.8.0-1) ... 175s Selecting previously unselected package r-cran-lifecycle. 175s Preparing to unpack .../141-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 175s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 175s Selecting previously unselected package r-cran-vctrs. 175s Preparing to unpack .../142-r-cran-vctrs_0.6.5-1_amd64.deb ... 175s Unpacking r-cran-vctrs (0.6.5-1) ... 175s Selecting previously unselected package r-cran-blob. 175s Preparing to unpack .../143-r-cran-blob_1.3.0-1_all.deb ... 175s Unpacking r-cran-blob (1.3.0-1) ... 175s Selecting previously unselected package r-cran-fastmap. 175s Preparing to unpack .../144-r-cran-fastmap_1.2.0-1_amd64.deb ... 175s Unpacking r-cran-fastmap (1.2.0-1) ... 175s Selecting previously unselected package r-cran-cachem. 175s Preparing to unpack .../145-r-cran-cachem_1.1.0-1_amd64.deb ... 175s Unpacking r-cran-cachem (1.1.0-1) ... 175s Selecting previously unselected package r-cran-memoise. 175s Preparing to unpack .../146-r-cran-memoise_2.0.1-1build1_all.deb ... 175s Unpacking r-cran-memoise (2.0.1-1build1) ... 175s Selecting previously unselected package r-cran-pkgconfig. 175s Preparing to unpack .../147-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 175s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 175s Selecting previously unselected package r-cran-plogr. 175s Preparing to unpack .../148-r-cran-plogr_0.2.0-3build2_all.deb ... 175s Unpacking r-cran-plogr (0.2.0-3build2) ... 175s Selecting previously unselected package r-cran-cpp11. 175s Preparing to unpack .../149-r-cran-cpp11_0.5.3-1_all.deb ... 175s Unpacking r-cran-cpp11 (0.5.3-1) ... 175s Selecting previously unselected package r-cran-rsqlite. 175s Preparing to unpack .../150-r-cran-rsqlite_2.3.9-1_amd64.deb ... 175s Unpacking r-cran-rsqlite (2.3.9-1) ... 175s Selecting previously unselected package r-cran-curl. 175s Preparing to unpack .../151-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 175s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-jsonlite. 175s Preparing to unpack .../152-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 175s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 175s Selecting previously unselected package r-cran-mime. 175s Preparing to unpack .../153-r-cran-mime_0.12-2_amd64.deb ... 175s Unpacking r-cran-mime (0.12-2) ... 175s Selecting previously unselected package r-cran-sys. 175s Preparing to unpack .../154-r-cran-sys_3.4.3-1_amd64.deb ... 175s Unpacking r-cran-sys (3.4.3-1) ... 175s Selecting previously unselected package r-cran-askpass. 175s Preparing to unpack .../155-r-cran-askpass_1.2.1-1_amd64.deb ... 175s Unpacking r-cran-askpass (1.2.1-1) ... 175s Selecting previously unselected package r-cran-openssl. 175s Preparing to unpack .../156-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 175s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 175s Selecting previously unselected package r-cran-r6. 175s Preparing to unpack .../157-r-cran-r6_2.6.1-1_all.deb ... 175s Unpacking r-cran-r6 (2.6.1-1) ... 175s Selecting previously unselected package r-cran-httr. 175s Preparing to unpack .../158-r-cran-httr_1.4.7+dfsg-1_all.deb ... 175s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 175s Selecting previously unselected package r-cran-png. 175s Preparing to unpack .../159-r-cran-png_0.1-8-1build2_amd64.deb ... 175s Unpacking r-cran-png (0.1-8-1build2) ... 175s Selecting previously unselected package r-bioc-zlibbioc. 175s Preparing to unpack .../160-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 175s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 175s Selecting previously unselected package r-bioc-xvector. 175s Preparing to unpack .../161-r-bioc-xvector_0.46.0-2_amd64.deb ... 175s Unpacking r-bioc-xvector (0.46.0-2) ... 175s Selecting previously unselected package r-bioc-ucsc.utils. 175s Preparing to unpack .../162-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 175s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 175s Selecting previously unselected package r-bioc-genomeinfodbdata. 175s Preparing to unpack .../163-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 175s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 175s Selecting previously unselected package r-bioc-genomeinfodb. 175s Preparing to unpack .../164-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 175s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 175s Selecting previously unselected package r-cran-crayon. 175s Preparing to unpack .../165-r-cran-crayon_1.5.3-1_all.deb ... 175s Unpacking r-cran-crayon (1.5.3-1) ... 175s Selecting previously unselected package r-bioc-biostrings. 175s Preparing to unpack .../166-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 175s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 175s Selecting previously unselected package r-bioc-keggrest. 175s Preparing to unpack .../167-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 175s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 175s Selecting previously unselected package r-bioc-annotationdbi. 175s Preparing to unpack .../168-r-bioc-annotationdbi_1.68.0-2_all.deb ... 175s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 175s Selecting previously unselected package r-cran-xml. 175s Preparing to unpack .../169-r-cran-xml_3.99-0.20-1_amd64.deb ... 175s Unpacking r-cran-xml (3.99-0.20-1) ... 175s Selecting previously unselected package r-cran-xtable. 176s Preparing to unpack .../170-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 176s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 176s Selecting previously unselected package r-bioc-annotate. 176s Preparing to unpack .../171-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 176s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 176s Selecting previously unselected package r-bioc-genomicranges. 176s Preparing to unpack .../172-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 176s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 176s Selecting previously unselected package r-cran-lazyeval. 176s Preparing to unpack .../173-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 176s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 176s Selecting previously unselected package r-bioc-annotationfilter. 176s Preparing to unpack .../174-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 176s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 176s Selecting previously unselected package r-cran-generics. 176s Preparing to unpack .../175-r-cran-generics_0.1.4-1_all.deb ... 176s Unpacking r-cran-generics (0.1.4-1) ... 176s Selecting previously unselected package r-cran-magrittr. 176s Preparing to unpack .../176-r-cran-magrittr_2.0.3-1_amd64.deb ... 176s Unpacking r-cran-magrittr (2.0.3-1) ... 176s Selecting previously unselected package r-cran-utf8. 176s Preparing to unpack .../177-r-cran-utf8_1.2.4-1_amd64.deb ... 176s Unpacking r-cran-utf8 (1.2.4-1) ... 176s Selecting previously unselected package r-cran-pillar. 176s Preparing to unpack .../178-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 176s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-fansi. 176s Preparing to unpack .../179-r-cran-fansi_1.0.6-2_amd64.deb ... 176s Unpacking r-cran-fansi (1.0.6-2) ... 176s Selecting previously unselected package r-cran-tibble. 176s Preparing to unpack .../180-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 176s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 176s Selecting previously unselected package r-cran-withr. 176s Preparing to unpack .../181-r-cran-withr_3.0.2+dfsg-1_all.deb ... 176s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 176s Selecting previously unselected package r-cran-tidyselect. 176s Preparing to unpack .../182-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 176s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-dplyr. 176s Preparing to unpack .../183-r-cran-dplyr_1.1.4-4_amd64.deb ... 176s Unpacking r-cran-dplyr (1.1.4-4) ... 176s Selecting previously unselected package r-cran-purrr. 176s Preparing to unpack .../184-r-cran-purrr_1.0.4-1_amd64.deb ... 176s Unpacking r-cran-purrr (1.0.4-1) ... 176s Selecting previously unselected package r-cran-stringi. 176s Preparing to unpack .../185-r-cran-stringi_1.8.4-1build2_amd64.deb ... 176s Unpacking r-cran-stringi (1.8.4-1build2) ... 176s Selecting previously unselected package r-cran-stringr. 176s Preparing to unpack .../186-r-cran-stringr_1.5.1-1_all.deb ... 176s Unpacking r-cran-stringr (1.5.1-1) ... 176s Selecting previously unselected package r-cran-tidyr. 176s Preparing to unpack .../187-r-cran-tidyr_1.3.1-1_amd64.deb ... 176s Unpacking r-cran-tidyr (1.3.1-1) ... 176s Selecting previously unselected package r-cran-dbplyr. 176s Preparing to unpack .../188-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ... 176s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-filelock. 176s Preparing to unpack .../189-r-cran-filelock_1.0.3-1_amd64.deb ... 176s Unpacking r-cran-filelock (1.0.3-1) ... 176s Selecting previously unselected package r-bioc-biocfilecache. 176s Preparing to unpack .../190-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 176s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 176s Selecting previously unselected package r-cran-biocmanager. 176s Preparing to unpack .../191-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 176s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 176s Selecting previously unselected package r-bioc-biocversion. 176s Preparing to unpack .../192-r-bioc-biocversion_3.20.0-2_all.deb ... 176s Unpacking r-bioc-biocversion (3.20.0-2) ... 176s Selecting previously unselected package r-cran-rappdirs. 176s Preparing to unpack .../193-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 176s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 176s Selecting previously unselected package r-cran-yaml. 176s Preparing to unpack .../194-r-cran-yaml_2.3.10-1_amd64.deb ... 176s Unpacking r-cran-yaml (2.3.10-1) ... 176s Selecting previously unselected package r-bioc-annotationhub. 176s Preparing to unpack .../195-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 176s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 176s Selecting previously unselected package r-bioc-biocio. 176s Preparing to unpack .../196-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 176s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 176s Selecting previously unselected package r-cran-formatr. 176s Preparing to unpack .../197-r-cran-formatr_1.14-2_all.deb ... 176s Unpacking r-cran-formatr (1.14-2) ... 176s Selecting previously unselected package r-cran-lambda.r. 176s Preparing to unpack .../198-r-cran-lambda.r_1.2.4-2build2_all.deb ... 176s Unpacking r-cran-lambda.r (1.2.4-2build2) ... 176s Selecting previously unselected package r-cran-futile.options. 176s Preparing to unpack .../199-r-cran-futile.options_1.0.1-3build2_all.deb ... 176s Unpacking r-cran-futile.options (1.0.1-3build2) ... 176s Selecting previously unselected package r-cran-futile.logger. 176s Preparing to unpack .../200-r-cran-futile.logger_1.4.3-4build2_all.deb ... 176s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 176s Selecting previously unselected package r-cran-snow. 176s Preparing to unpack .../201-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 176s Unpacking r-cran-snow (1:0.4.4-2build1) ... 176s Selecting previously unselected package r-cran-codetools. 176s Preparing to unpack .../202-r-cran-codetools_0.2-20-1build1_all.deb ... 176s Unpacking r-cran-codetools (0.2-20-1build1) ... 176s Selecting previously unselected package r-cran-bh. 176s Preparing to unpack .../203-r-cran-bh_1.84.0-1_all.deb ... 176s Unpacking r-cran-bh (1.84.0-1) ... 176s Selecting previously unselected package r-bioc-biocparallel. 176s Preparing to unpack .../204-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 176s Unpacking r-bioc-biocparallel (1.40.0-2) ... 176s Selecting previously unselected package r-cran-hms. 176s Preparing to unpack .../205-r-cran-hms_1.1.4-1_all.deb ... 176s Unpacking r-cran-hms (1.1.4-1) ... 176s Selecting previously unselected package r-cran-prettyunits. 176s Preparing to unpack .../206-r-cran-prettyunits_1.2.0-1_all.deb ... 176s Unpacking r-cran-prettyunits (1.2.0-1) ... 176s Selecting previously unselected package r-cran-progress. 176s Preparing to unpack .../207-r-cran-progress_1.2.3-1_all.deb ... 176s Unpacking r-cran-progress (1.2.3-1) ... 176s Selecting previously unselected package r-cran-httr2. 176s Preparing to unpack .../208-r-cran-httr2_1.1.1-2_all.deb ... 176s Unpacking r-cran-httr2 (1.1.1-2) ... 176s Selecting previously unselected package r-cran-digest. 176s Preparing to unpack .../209-r-cran-digest_0.6.39-1_amd64.deb ... 176s Unpacking r-cran-digest (0.6.39-1) ... 176s Selecting previously unselected package r-cran-xml2. 176s Preparing to unpack .../210-r-cran-xml2_1.4.1-1_amd64.deb ... 176s Unpacking r-cran-xml2 (1.4.1-1) ... 176s Selecting previously unselected package r-bioc-biomart. 176s Preparing to unpack .../211-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 176s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-bitops. 176s Preparing to unpack .../212-r-cran-bitops_1.0-9-1_amd64.deb ... 176s Unpacking r-cran-bitops (1.0-9-1) ... 176s Selecting previously unselected package r-bioc-rhtslib. 176s Preparing to unpack .../213-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 176s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 176s Selecting previously unselected package r-bioc-rsamtools. 176s Preparing to unpack .../214-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 176s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 176s Selecting previously unselected package r-cran-matrixstats. 176s Preparing to unpack .../215-r-cran-matrixstats_1.5.0-1_amd64.deb ... 176s Unpacking r-cran-matrixstats (1.5.0-1) ... 176s Selecting previously unselected package r-bioc-matrixgenerics. 176s Preparing to unpack .../216-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 176s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 176s Selecting previously unselected package r-cran-lattice. 177s Preparing to unpack .../217-r-cran-lattice_0.22-7-1_amd64.deb ... 177s Unpacking r-cran-lattice (0.22-7-1) ... 177s Selecting previously unselected package r-cran-matrix. 177s Preparing to unpack .../218-r-cran-matrix_1.7-4-1_amd64.deb ... 177s Unpacking r-cran-matrix (1.7-4-1) ... 177s Selecting previously unselected package r-cran-abind. 177s Preparing to unpack .../219-r-cran-abind_1.4-8-1build1_all.deb ... 177s Unpacking r-cran-abind (1.4-8-1build1) ... 177s Selecting previously unselected package r-bioc-s4arrays. 177s Preparing to unpack .../220-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 177s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 177s Selecting previously unselected package r-bioc-sparsearray. 177s Preparing to unpack .../221-r-bioc-sparsearray_1.6.2+dfsg-2_amd64.deb ... 177s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 177s Selecting previously unselected package r-bioc-delayedarray. 177s Preparing to unpack .../222-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 177s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 177s Selecting previously unselected package r-bioc-summarizedexperiment. 177s Preparing to unpack .../223-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 177s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 177s Selecting previously unselected package r-bioc-genomicalignments. 177s Preparing to unpack .../224-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 177s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 177s Selecting previously unselected package r-cran-rcurl. 177s Preparing to unpack .../225-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 177s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 177s Selecting previously unselected package r-cran-rjson. 177s Preparing to unpack .../226-r-cran-rjson_0.2.23-1_amd64.deb ... 177s Unpacking r-cran-rjson (0.2.23-1) ... 177s Selecting previously unselected package r-cran-restfulr. 177s Preparing to unpack .../227-r-cran-restfulr_0.0.15-1_amd64.deb ... 177s Unpacking r-cran-restfulr (0.0.15-1) ... 177s Selecting previously unselected package r-bioc-rtracklayer. 177s Preparing to unpack .../228-r-bioc-rtracklayer_1.66.0-3_amd64.deb ... 177s Unpacking r-bioc-rtracklayer (1.66.0-3) ... 177s Selecting previously unselected package r-bioc-bsgenome. 177s Preparing to unpack .../229-r-bioc-bsgenome_1.74.0-2_all.deb ... 177s Unpacking r-bioc-bsgenome (1.74.0-2) ... 177s Selecting previously unselected package r-cran-locfit. 177s Preparing to unpack .../230-r-cran-locfit_1.5-9.12-1_amd64.deb ... 177s Unpacking r-cran-locfit (1.5-9.12-1) ... 177s Selecting previously unselected package r-cran-gtable. 177s Preparing to unpack .../231-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 177s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 177s Selecting previously unselected package r-cran-isoband. 177s Preparing to unpack .../232-r-cran-isoband_0.2.7-1_amd64.deb ... 177s Unpacking r-cran-isoband (0.2.7-1) ... 177s Selecting previously unselected package r-cran-s7. 177s Preparing to unpack .../233-r-cran-s7_0.2.0-1_amd64.deb ... 177s Unpacking r-cran-s7 (0.2.0-1) ... 177s Selecting previously unselected package r-cran-farver. 177s Preparing to unpack .../234-r-cran-farver_2.1.2-1_amd64.deb ... 177s Unpacking r-cran-farver (2.1.2-1) ... 177s Selecting previously unselected package r-cran-labeling. 177s Preparing to unpack .../235-r-cran-labeling_0.4.3-1_all.deb ... 177s Unpacking r-cran-labeling (0.4.3-1) ... 177s Selecting previously unselected package r-cran-rcolorbrewer. 177s Preparing to unpack .../236-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 177s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 177s Selecting previously unselected package r-cran-viridislite. 177s Preparing to unpack .../237-r-cran-viridislite_0.4.3-1_all.deb ... 177s Unpacking r-cran-viridislite (0.4.3-1) ... 177s Selecting previously unselected package r-cran-scales. 177s Preparing to unpack .../238-r-cran-scales_1.4.0-1_all.deb ... 177s Unpacking r-cran-scales (1.4.0-1) ... 177s Selecting previously unselected package r-cran-ggplot2. 177s Preparing to unpack .../239-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 177s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 177s Selecting previously unselected package r-cran-littler. 177s Preparing to unpack .../240-r-cran-littler_0.3.22-1_amd64.deb ... 177s Unpacking r-cran-littler (0.3.22-1) ... 177s Selecting previously unselected package r-cran-pkgkitten. 177s Preparing to unpack .../241-r-cran-pkgkitten_0.2.4-1_all.deb ... 177s Unpacking r-cran-pkgkitten (0.2.4-1) ... 177s Selecting previously unselected package r-cran-rcpp. 177s Preparing to unpack .../242-r-cran-rcpp_1.1.0-1_amd64.deb ... 177s Unpacking r-cran-rcpp (1.1.0-1) ... 177s Selecting previously unselected package r-cran-rcpparmadillo. 177s Preparing to unpack .../243-r-cran-rcpparmadillo_15.2.3-1-1_amd64.deb ... 177s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ... 177s Selecting previously unselected package r-bioc-deseq2. 177s Preparing to unpack .../244-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 177s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 177s Selecting previously unselected package r-cran-hwriter. 177s Preparing to unpack .../245-r-cran-hwriter_1.3.2.1-1_all.deb ... 177s Unpacking r-cran-hwriter (1.3.2.1-1) ... 177s Selecting previously unselected package r-cran-statmod. 177s Preparing to unpack .../246-r-cran-statmod_1.5.0-1_amd64.deb ... 177s Unpacking r-cran-statmod (1.5.0-1) ... 177s Selecting previously unselected package r-bioc-geneplotter. 177s Preparing to unpack .../247-r-bioc-geneplotter_1.84.0+dfsg-2_all.deb ... 177s Unpacking r-bioc-geneplotter (1.84.0+dfsg-2) ... 177s Selecting previously unselected package r-cran-survival. 177s Preparing to unpack .../248-r-cran-survival_3.8-6-1_amd64.deb ... 177s Unpacking r-cran-survival (3.8-6-1) ... 177s Selecting previously unselected package r-bioc-genefilter. 177s Preparing to unpack .../249-r-bioc-genefilter_1.88.0-2_amd64.deb ... 177s Unpacking r-bioc-genefilter (1.88.0-2) ... 177s Selecting previously unselected package r-bioc-dexseq. 178s Preparing to unpack .../250-r-bioc-dexseq_1.52.0+dfsg-2_all.deb ... 178s Unpacking r-bioc-dexseq (1.52.0+dfsg-2) ... 178s Selecting previously unselected package r-bioc-limma. 178s Preparing to unpack .../251-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 178s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 178s Selecting previously unselected package r-bioc-edger. 178s Preparing to unpack .../252-r-bioc-edger_4.4.2+dfsg-1_amd64.deb ... 178s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 178s Selecting previously unselected package r-bioc-genomicfeatures. 178s Preparing to unpack .../253-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 178s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 178s Selecting previously unselected package r-bioc-protgenerics. 178s Preparing to unpack .../254-r-bioc-protgenerics_1.38.0-2_all.deb ... 178s Unpacking r-bioc-protgenerics (1.38.0-2) ... 178s Selecting previously unselected package r-bioc-ensembldb. 178s Preparing to unpack .../255-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 178s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 178s Selecting previously unselected package r-cran-locfdr. 178s Preparing to unpack .../256-r-cran-locfdr_1.1-8-2_all.deb ... 178s Unpacking r-cran-locfdr (1.1-8-2) ... 178s Selecting previously unselected package r-cran-pbapply. 178s Preparing to unpack .../257-r-cran-pbapply_1.7-2-1_all.deb ... 178s Unpacking r-cran-pbapply (1.7-2-1) ... 178s Selecting previously unselected package r-cran-boot. 178s Preparing to unpack .../258-r-cran-boot_1.3-32-1_all.deb ... 178s Unpacking r-cran-boot (1.3-32-1) ... 178s Selecting previously unselected package r-bioc-saturn. 178s Preparing to unpack .../259-r-bioc-saturn_1.14.0+dfsg-2_all.deb ... 178s Unpacking r-bioc-saturn (1.14.0+dfsg-2) ... 178s Selecting previously unselected package r-cran-nlme. 178s Preparing to unpack .../260-r-cran-nlme_3.1.168-1_amd64.deb ... 178s Unpacking r-cran-nlme (3.1.168-1) ... 178s Selecting previously unselected package r-cran-mgcv. 178s Preparing to unpack .../261-r-cran-mgcv_1.9-4-1_amd64.deb ... 178s Unpacking r-cran-mgcv (1.9-4-1) ... 178s Selecting previously unselected package r-bioc-sva. 178s Preparing to unpack .../262-r-bioc-sva_3.54.0-2_amd64.deb ... 178s Unpacking r-bioc-sva (3.54.0-2) ... 178s Selecting previously unselected package r-cran-clipr. 178s Preparing to unpack .../263-r-cran-clipr_0.8.0-1build1_all.deb ... 178s Unpacking r-cran-clipr (0.8.0-1build1) ... 178s Selecting previously unselected package r-cran-tzdb. 178s Preparing to unpack .../264-r-cran-tzdb_0.5.0-1_amd64.deb ... 178s Unpacking r-cran-tzdb (0.5.0-1) ... 178s Selecting previously unselected package r-cran-vroom. 178s Preparing to unpack .../265-r-cran-vroom_1.7.0-1_amd64.deb ... 178s Unpacking r-cran-vroom (1.7.0-1) ... 178s Selecting previously unselected package r-cran-readr. 178s Preparing to unpack .../266-r-cran-readr_2.1.6-1_amd64.deb ... 178s Unpacking r-cran-readr (2.1.6-1) ... 178s Selecting previously unselected package r-bioc-pfamanalyzer. 178s Preparing to unpack .../267-r-bioc-pfamanalyzer_1.6.0+dfsg-2_all.deb ... 178s Unpacking r-bioc-pfamanalyzer (1.6.0+dfsg-2) ... 178s Selecting previously unselected package r-cran-plyr. 178s Preparing to unpack .../268-r-cran-plyr_1.8.9-1_amd64.deb ... 178s Unpacking r-cran-plyr (1.8.9-1) ... 178s Selecting previously unselected package r-cran-reshape2. 178s Preparing to unpack .../269-r-cran-reshape2_1.4.4-2build2_amd64.deb ... 178s Unpacking r-cran-reshape2 (1.4.4-2build2) ... 178s Selecting previously unselected package r-cran-gridextra. 178s Preparing to unpack .../270-r-cran-gridextra_2.3-3build2_all.deb ... 178s Unpacking r-cran-gridextra (2.3-3build2) ... 178s Selecting previously unselected package r-cran-venndiagram. 178s Preparing to unpack .../271-r-cran-venndiagram_1.7.3-1_all.deb ... 178s Unpacking r-cran-venndiagram (1.7.3-1) ... 178s Selecting previously unselected package r-bioc-tximport. 178s Preparing to unpack .../272-r-bioc-tximport_1.34.0+dfsg-2_all.deb ... 178s Unpacking r-bioc-tximport (1.34.0+dfsg-2) ... 178s Selecting previously unselected package r-bioc-txdbmaker. 178s Preparing to unpack .../273-r-bioc-txdbmaker_1.2.1+ds-2_all.deb ... 178s Unpacking r-bioc-txdbmaker (1.2.1+ds-2) ... 178s Selecting previously unselected package r-bioc-tximeta. 178s Preparing to unpack .../274-r-bioc-tximeta_1.24.0+dfsg-2_all.deb ... 178s Unpacking r-bioc-tximeta (1.24.0+dfsg-2) ... 178s Selecting previously unselected package r-bioc-pwalign. 178s Preparing to unpack .../275-r-bioc-pwalign_1.2.0-3_amd64.deb ... 178s Unpacking r-bioc-pwalign (1.2.0-3) ... 178s Selecting previously unselected package r-bioc-isoformswitchanalyzer. 178s Preparing to unpack .../276-r-bioc-isoformswitchanalyzer_2.6.0+ds-2_amd64.deb ... 178s Unpacking r-bioc-isoformswitchanalyzer (2.6.0+ds-2) ... 178s Selecting previously unselected package r-cran-base64enc. 178s Preparing to unpack .../277-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 178s Unpacking r-cran-base64enc (0.1-3-3build1) ... 178s Selecting previously unselected package r-cran-htmltools. 178s Preparing to unpack .../278-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 178s Unpacking r-cran-htmltools (0.5.8.1-1) ... 178s Selecting previously unselected package r-cran-jquerylib. 178s Preparing to unpack .../279-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 178s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 178s Selecting previously unselected package r-cran-fs. 178s Preparing to unpack .../280-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 178s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 178s Selecting previously unselected package r-cran-sass. 178s Preparing to unpack .../281-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 178s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 178s Selecting previously unselected package r-cran-bslib. 178s Preparing to unpack .../282-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 178s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 178s Selecting previously unselected package r-cran-commonmark. 178s Preparing to unpack .../283-r-cran-commonmark_1.9.5-1_amd64.deb ... 178s Unpacking r-cran-commonmark (1.9.5-1) ... 178s Selecting previously unselected package r-cran-evaluate. 178s Preparing to unpack .../284-r-cran-evaluate_1.0.5-1_all.deb ... 178s Unpacking r-cran-evaluate (1.0.5-1) ... 178s Selecting previously unselected package r-cran-fontawesome. 178s Preparing to unpack .../285-r-cran-fontawesome_0.5.3-1_all.deb ... 178s Unpacking r-cran-fontawesome (0.5.3-1) ... 178s Selecting previously unselected package r-cran-xfun. 178s Preparing to unpack .../286-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 178s Unpacking r-cran-xfun (0.55+dfsg-1) ... 178s Selecting previously unselected package r-cran-highr. 178s Preparing to unpack .../287-r-cran-highr_0.11+dfsg-1_all.deb ... 178s Unpacking r-cran-highr (0.11+dfsg-1) ... 178s Selecting previously unselected package r-cran-later. 178s Preparing to unpack .../288-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 178s Unpacking r-cran-later (1.4.1+dfsg-1) ... 178s Selecting previously unselected package r-cran-promises. 178s Preparing to unpack .../289-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 178s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 179s Selecting previously unselected package r-cran-httpuv. 179s Preparing to unpack .../290-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 179s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 179s Selecting previously unselected package libjs-mathjax. 179s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 179s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 179s Selecting previously unselected package r-cran-knitr. 179s Preparing to unpack .../292-r-cran-knitr_1.51+dfsg-1_all.deb ... 179s Unpacking r-cran-knitr (1.51+dfsg-1) ... 179s Selecting previously unselected package r-cran-tinytex. 179s Preparing to unpack .../293-r-cran-tinytex_0.58-1_all.deb ... 179s Unpacking r-cran-tinytex (0.58-1) ... 179s Selecting previously unselected package libjs-modernizr. 179s Preparing to unpack .../294-libjs-modernizr_3.13.0-0.1build1_all.deb ... 179s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 179s Selecting previously unselected package r-cran-sourcetools. 179s Preparing to unpack .../295-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 179s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 179s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 179s Preparing to unpack .../296-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 179s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 179s Selecting previously unselected package r-cran-shiny. 179s Preparing to unpack .../297-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 179s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 179s Selecting previously unselected package r-cran-rmarkdown. 179s Preparing to unpack .../298-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 179s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 179s Setting up libjs-json (0~20221030+~1.0.8-1build1) ... 179s Setting up javascript-common (12+nmu1build1) ... 179s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 179s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 179s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 179s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ... 179s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 179s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ... 179s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ... 179s Setting up libxrender1:amd64 (1:0.9.12-1) ... 179s Setting up libdatrie1:amd64 (0.2.14-1) ... 179s Setting up libjs-popper.js (1.16.1+ds-6build1) ... 179s Setting up libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 179s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 179s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 179s Setting up unzip (6.0-29ubuntu1) ... 179s Setting up x11-common (1:7.7+24ubuntu1) ... 179s Setting up node-html5shiv (3.7.3+dfsg-5) ... 179s Setting up libdeflate0:amd64 (1.23-2build1) ... 179s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ... 179s Setting up libjs-microplugin.js (0.0.3+dfsg-2) ... 179s Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 179s Setting up libgomp1:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libjs-modernizr (3.13.0-0.1build1) ... 179s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 179s Setting up libpcre2-16-0:amd64 (10.46-1) ... 179s Setting up libjs-es5-shim (4.6.7-2) ... 179s Setting up zip (3.0-15ubuntu3) ... 179s Setting up libpcre2-32-0:amd64 (10.46-1) ... 179s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 179s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... 179s Setting up libpkgconf3:amd64 (1.8.1-4build1) ... 179s Setting up rpcsvc-proto (1.4.3-1build1) ... 179s Setting up libquadmath0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libjs-d3 (3.5.17-4build1) ... 179s Setting up fonts-dejavu-mono (2.37-8build1) ... 179s Setting up libmpc3:amd64 (1.3.1-2) ... 179s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 179s Setting up icu-devtools (78.2-1ubuntu1) ... 179s Setting up fonts-dejavu-core (2.37-8build1) ... 179s Setting up pkgconf-bin (1.8.1-4build1) ... 179s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 179s Setting up libgfortran5:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 179s Setting up liblzma-dev:amd64 (5.8.2-2) ... 179s Setting up libubsan1:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libpcre2-posix3:amd64 (10.46-1) ... 179s Setting up libjs-highlight.js (10.7.3+dfsg-2) ... 179s Setting up libhwasan0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ... 179s Setting up libasan8:amd64 (16-20260208-1ubuntu1) ... 179s Setting up liblua5.4-0:amd64 (5.4.8-1) ... 179s Setting up libharfbuzz0b:amd64 (12.3.2-1) ... 179s Setting up libthai-data (0.1.30-1) ... 179s Setting up node-bootstrap-sass (3.4.3-2) ... 179s Setting up libjs-prettify (2015.12.04+dfsg-3) ... 179s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 179s Setting up libjs-bootstrap4 (4.6.2+dfsg-1) ... 179s Setting up libpaper2:amd64 (2.2.5-0.3build1) ... 179s Setting up pandoc-data (3.1.11.1-3build1) ... 179s Setting up libtsan2:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 179s Setting up libisl23:amd64 (0.27-1build1) ... 179s Setting up libc-dev-bin (2.42-2ubuntu4) ... 179s Setting up libdeflate-dev:amd64 (1.23-2build1) ... 179s Setting up node-normalize.css (8.0.1-5.1) ... 179s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 179s Setting up xdg-utils (1.2.1-2ubuntu2) ... 179s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 179s Setting up libcc1-0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up liblsan0:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 179s Setting up dctrl-tools (2.24-3build4) ... 179s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 179s Setting up libitm1:amd64 (16-20260208-1ubuntu1) ... 179s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 179s Setting up libjpeg8:amd64 (8c-2ubuntu12) ... 179s Setting up libice6:amd64 (2:1.1.1-1build1) ... 179s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 179s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 179s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 179s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 179s Setting up libpaper-utils (2.2.5-0.3build1) ... 179s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 179s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 179s Setting up libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 179s Setting up pkgconf:amd64 (1.8.1-4build1) ... 179s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 179s Setting up libthai0:amd64 (0.1.30-1) ... 179s Setting up libjs-jquery-ui (1.13.2+dfsg-1build1) ... 179s Setting up pandoc (3.1.11.1+ds-4) ... 179s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 179s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 179s Setting up cpp-15 (15.2.0-12ubuntu1) ... 179s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 179s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ... 179s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 179s Setting up libsm6:amd64 (2:1.2.6-1build1) ... 180s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ... 180s Setting up libbz2-dev:amd64 (1.0.8-6build2) ... 180s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 180s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 180s Setting up fontconfig (2.17.1-3ubuntu1) ... 182s Regenerating fonts cache... done. 182s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 182s Setting up libxft2:amd64 (2.3.6-1build2) ... 182s Setting up libncurses-dev:amd64 (6.6+20251231-1) ... 182s Setting up libpcre2-dev:amd64 (10.46-1) ... 182s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 182s Setting up libtk8.6:amd64 (8.6.17-1) ... 182s Setting up libpango-1.0-0:amd64 (1.57.0-1) ... 182s Setting up libreadline-dev:amd64 (8.3-3) ... 182s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 182s Setting up libcairo2:amd64 (1.18.4-3) ... 182s Setting up gcc-15 (15.2.0-12ubuntu1) ... 182s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 182s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... 182s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 182s Setting up cpp (4:15.2.0-4ubuntu1) ... 182s Setting up libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ... 182s Setting up libboost-dev:amd64 (1.90.0.0ubuntu3) ... 182s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ... 182s Setting up libjpeg8-dev:amd64 (8c-2ubuntu12) ... 182s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 182s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ... 182s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 182s Setting up libpng-dev:amd64 (1.6.54-1) ... 182s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ... 182s Setting up gcc (4:15.2.0-4ubuntu1) ... 182s Setting up r-base-core (4.5.2-1ubuntu2) ... 182s Creating config file /etc/R/Renviron with new version 182s Setting up r-cran-crayon (1.5.3-1) ... 182s Setting up r-cran-locfdr (1.1-8-2) ... 182s Setting up r-cran-labeling (0.4.3-1) ... 182s Setting up r-cran-sourcetools (0.1.7-1-1) ... 182s Setting up r-cran-futile.options (1.0.1-3build2) ... 182s Setting up r-cran-lattice (0.22-7-1) ... 182s Setting up r-cran-nlme (3.1.168-1) ... 182s Setting up r-cran-farver (2.1.2-1) ... 182s Setting up r-cran-formatr (1.14-2) ... 182s Setting up r-cran-pbapply (1.7-2-1) ... 182s Setting up r-cran-xml (3.99-0.20-1) ... 182s Setting up r-cran-viridislite (0.4.3-1) ... 182s Setting up r-cran-locfit (1.5-9.12-1) ... 182s Setting up r-cran-statmod (1.5.0-1) ... 182s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 182s Setting up r-cran-lazyeval (0.2.2-1build2) ... 182s Setting up r-cran-clipr (0.8.0-1build1) ... 182s Setting up r-cran-commonmark (1.9.5-1) ... 182s Setting up r-cran-rjson (0.2.23-1) ... 182s Setting up r-cran-r6 (2.6.1-1) ... 182s Setting up r-cran-pkgkitten (0.2.4-1) ... 182s Setting up g++-15 (15.2.0-12ubuntu1) ... 182s Setting up r-cran-magrittr (2.0.3-1) ... 182s Setting up r-cran-rappdirs (0.3.3-1build1) ... 182s Setting up r-cran-filelock (1.0.3-1) ... 182s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 182s Setting up r-cran-littler (0.3.22-1) ... 182s Setting up r-cran-bh (1.84.0-1) ... 182s Setting up r-cran-fs (1.6.5+dfsg-1) ... 182s Setting up r-cran-rcpp (1.1.0-1) ... 182s Setting up r-cran-curl (7.0.0+dfsg-1) ... 182s Setting up r-cran-codetools (0.2-20-1build1) ... 182s Setting up r-cran-boot (1.3-32-1) ... 182s Setting up r-bioc-biocgenerics (0.52.0-2) ... 182s Setting up r-cran-rlang (1.1.5-3) ... 182s Setting up r-cran-matrixstats (1.5.0-1) ... 182s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 182s Setting up r-cran-xfun (0.55+dfsg-1) ... 182s Setting up r-cran-sys (3.4.3-1) ... 182s Setting up r-cran-plogr (0.2.0-3build2) ... 182s Setting up r-cran-withr (3.0.2+dfsg-1) ... 182s Setting up r-cran-mime (0.12-2) ... 182s Setting up r-cran-generics (0.1.4-1) ... 182s Setting up r-cran-base64enc (0.1-3-3build1) ... 182s Setting up r-cran-abind (1.4-8-1build1) ... 182s Setting up r-cran-digest (0.6.39-1) ... 182s Setting up r-cran-yaml (2.3.10-1) ... 182s Setting up r-cran-lambda.r (1.2.4-2build2) ... 182s Setting up r-bioc-protgenerics (1.38.0-2) ... 182s Setting up r-cran-evaluate (1.0.5-1) ... 182s Setting up r-cran-dbi (1.2.3-1build1) ... 182s Setting up r-cran-highr (0.11+dfsg-1) ... 182s Setting up r-cran-prettyunits (1.2.0-1) ... 182s Setting up r-cran-fansi (1.0.6-2) ... 182s Setting up r-cran-snow (1:0.4.4-2build1) ... 182s Setting up r-cran-glue (1.8.0-1) ... 182s Setting up r-cran-bit (4.6.0+dfsg-1) ... 182s Setting up r-cran-xtable (1:1.8-4-2build1) ... 182s Setting up r-cran-cli (3.6.4-1) ... 182s Setting up gfortran (4:15.2.0-4ubuntu1) ... 182s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 182s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 182s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 182s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 182s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 182s Setting up r-cran-bitops (1.0-9-1) ... 182s Setting up r-bioc-biocversion (3.20.0-2) ... 182s Setting up r-cran-bit64 (4.6.0-1-4) ... 182s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 182s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 182s Setting up r-cran-askpass (1.2.1-1) ... 182s Setting up r-cran-fastmap (1.2.0-1) ... 182s Setting up r-cran-png (0.1-8-1build2) ... 182s Setting up r-bioc-biobase (2.66.0-2) ... 182s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 182s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 182s Setting up r-cran-utf8 (1.2.4-1) ... 182s Setting up r-cran-stringi (1.8.4-1build2) ... 182s Setting up r-cran-hwriter (1.3.2.1-1) ... 182s Setting up r-cran-s7 (0.2.0-1) ... 182s Setting up r-cran-cpp11 (0.5.3-1) ... 182s Setting up r-cran-plyr (1.8.9-1) ... 182s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 182s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 182s Setting up r-cran-isoband (0.2.7-1) ... 182s Setting up r-cran-futile.logger (1.4.3-4build2) ... 182s Setting up r-cran-scales (1.4.0-1) ... 182s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 182s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 182s Setting up r-cran-later (1.4.1+dfsg-1) ... 182s Setting up r-cran-matrix (1.7-4-1) ... 182s Setting up r-cran-htmltools (0.5.8.1-1) ... 182s Setting up r-cran-tinytex (0.58-1) ... 182s Setting up r-bioc-tximport (1.34.0+dfsg-2) ... 182s Setting up r-cran-knitr (1.51+dfsg-1) ... 182s Setting up r-cran-mgcv (1.9-4-1) ... 182s Setting up g++ (4:15.2.0-4ubuntu1) ... 182s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 182s Setting up r-cran-cachem (1.1.0-1) ... 182s Setting up r-cran-sass (0.4.9+dfsg-1) ... 182s Setting up build-essential (12.12ubuntu2) ... 182s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ... 182s Setting up r-bioc-iranges (2.40.1-3) ... 182s Setting up r-cran-tzdb (0.5.0-1) ... 182s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 182s Setting up r-cran-restfulr (0.0.15-1) ... 182s Setting up r-cran-vctrs (0.6.5-1) ... 182s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 182s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 182s Setting up r-base-dev (4.5.2-1ubuntu2) ... 182s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 182s Setting up r-cran-stringr (1.5.1-1) ... 182s Setting up r-bioc-biocparallel (1.40.0-2) ... 182s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 182s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ... 182s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 182s Setting up r-cran-venndiagram (1.7.3-1) ... 182s Setting up r-cran-xml2 (1.4.1-1) ... 182s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 182s Setting up r-cran-fontawesome (0.5.3-1) ... 182s Setting up r-cran-survival (3.8-6-1) ... 182s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 182s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 182s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 182s Setting up r-cran-reshape2 (1.4.4-2build2) ... 182s Setting up r-cran-httr2 (1.1.1-2) ... 182s Setting up r-cran-httr (1.4.7+dfsg-1) ... 182s Setting up r-cran-gridextra (2.3-3build2) ... 182s Setting up r-cran-hms (1.1.4-1) ... 182s Setting up r-cran-memoise (2.0.1-1build1) ... 182s Setting up r-cran-promises (1.3.2+dfsg-1) ... 182s Setting up r-cran-purrr (1.0.4-1) ... 182s Setting up r-cran-blob (1.3.0-1) ... 182s Setting up pkg-r-autopkgtest (20250812) ... 182s Setting up r-bioc-xvector (0.46.0-2) ... 182s Setting up r-cran-dplyr (1.1.4-4) ... 182s Setting up r-cran-rsqlite (2.3.9-1) ... 182s Setting up r-cran-progress (1.2.3-1) ... 182s Setting up r-cran-vroom (1.7.0-1) ... 182s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 182s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 182s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 182s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 182s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 182s Setting up r-cran-readr (2.1.6-1) ... 182s Setting up r-cran-tidyr (1.3.1-1) ... 182s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ... 182s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 182s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 182s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 182s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 182s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 182s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 182s Setting up r-bioc-pfamanalyzer (1.6.0+dfsg-2) ... 182s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 182s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 182s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 182s Setting up r-bioc-pwalign (1.2.0-3) ... 182s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 182s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 182s Setting up r-bioc-annotationdbi (1.68.0-2) ... 182s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 182s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 182s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 182s Setting up r-bioc-saturn (1.14.0+dfsg-2) ... 182s Setting up r-bioc-genefilter (1.88.0-2) ... 182s Setting up r-bioc-genomicalignments (1.42.0-2) ... 182s Setting up r-bioc-geneplotter (1.84.0+dfsg-2) ... 182s Setting up r-bioc-rtracklayer (1.66.0-3) ... 182s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 182s Setting up r-bioc-dexseq (1.52.0+dfsg-2) ... 182s Setting up r-bioc-sva (3.54.0-2) ... 182s Setting up r-bioc-bsgenome (1.74.0-2) ... 182s Setting up r-bioc-txdbmaker (1.2.1+ds-2) ... 182s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 182s Setting up r-bioc-tximeta (1.24.0+dfsg-2) ... 182s Setting up r-bioc-isoformswitchanalyzer (2.6.0+ds-2) ... 182s Processing triggers for libc-bin (2.42-2ubuntu4) ... 182s Processing triggers for man-db (2.13.1-1build1) ... 183s Processing triggers for install-info (7.2-5) ... 184s autopkgtest [04:17:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 184s autopkgtest [04:17:28]: test pkg-r-autopkgtest: [----------------------- 184s Test: Try to load the R library IsoformSwitchAnalyzeR 184s 184s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 184s Copyright (C) 2025 The R Foundation for Statistical Computing 184s Platform: x86_64-pc-linux-gnu 184s 184s R is free software and comes with ABSOLUTELY NO WARRANTY. 184s You are welcome to redistribute it under certain conditions. 184s Type 'license()' or 'licence()' for distribution details. 184s 184s R is a collaborative project with many contributors. 184s Type 'contributors()' for more information and 184s 'citation()' on how to cite R or R packages in publications. 184s 184s Type 'demo()' for some demos, 'help()' for on-line help, or 184s 'help.start()' for an HTML browser interface to help. 184s Type 'q()' to quit R. 184s 184s > library('IsoformSwitchAnalyzeR') 184s Loading required package: limma 184s Loading required package: DEXSeq 184s Loading required package: BiocParallel 184s Loading required package: Biobase 184s Loading required package: BiocGenerics 184s 184s Attaching package: ‘BiocGenerics’ 184s 184s The following object is masked from ‘package:limma’: 184s 184s plotMA 184s 184s The following objects are masked from ‘package:stats’: 184s 184s IQR, mad, sd, var, xtabs 184s 184s The following objects are masked from ‘package:base’: 184s 184s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 184s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 184s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 184s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 184s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 184s table, tapply, union, unique, unsplit, which.max, which.min 184s 184s Welcome to Bioconductor 184s 184s Vignettes contain introductory material; view with 184s 'browseVignettes()'. To cite Bioconductor, see 184s 'citation("Biobase")', and for packages 'citation("pkgname")'. 184s 184s Loading required package: SummarizedExperiment 184s Loading required package: MatrixGenerics 184s Loading required package: matrixStats 184s 184s Attaching package: ‘matrixStats’ 184s 184s The following objects are masked from ‘package:Biobase’: 184s 184s anyMissing, rowMedians 184s 184s 184s Attaching package: ‘MatrixGenerics’ 184s 184s The following objects are masked from ‘package:matrixStats’: 184s 184s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 184s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 184s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 184s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 184s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 184s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 184s colWeightedMeans, colWeightedMedians, colWeightedSds, 184s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 184s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 184s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 184s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 184s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 184s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 184s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 184s rowWeightedSds, rowWeightedVars 184s 184s The following object is masked from ‘package:Biobase’: 184s 184s rowMedians 184s 184s Loading required package: GenomicRanges 184s Loading required package: stats4 185s Loading required package: S4Vectors 185s 185s Attaching package: ‘S4Vectors’ 185s 185s The following object is masked from ‘package:utils’: 185s 185s findMatches 185s 185s The following objects are masked from ‘package:base’: 185s 185s expand.grid, I, unname 185s 185s Loading required package: IRanges 185s Loading required package: GenomeInfoDb 188s Loading required package: DESeq2 189s Loading required package: AnnotationDbi 189s Loading required package: RColorBrewer 190s Loading required package: satuRn 191s Loading required package: sva 191s Loading required package: mgcv 191s Loading required package: nlme 191s 191s Attaching package: ‘nlme’ 191s 191s The following object is masked from ‘package:IRanges’: 191s 191s collapse 191s 191s This is mgcv 1.9-4. For overview type '?mgcv'. 191s Loading required package: genefilter 191s 191s Attaching package: ‘genefilter’ 191s 191s The following objects are masked from ‘package:MatrixGenerics’: 191s 191s rowSds, rowVars 191s 191s The following objects are masked from ‘package:matrixStats’: 191s 191s rowSds, rowVars 191s 191s Loading required package: ggplot2 191s Loading required package: pfamAnalyzeR 191s Loading required package: readr 191s 191s Attaching package: ‘readr’ 191s 191s The following object is masked from ‘package:genefilter’: 191s 191s spec 191s 191s Loading required package: stringr 191s Loading required package: dplyr 191s 191s Attaching package: ‘dplyr’ 191s 191s The following object is masked from ‘package:nlme’: 191s 191s collapse 191s 191s The following object is masked from ‘package:AnnotationDbi’: 191s 191s select 191s 191s The following objects are masked from ‘package:GenomicRanges’: 191s 191s intersect, setdiff, union 191s 191s The following object is masked from ‘package:GenomeInfoDb’: 191s 191s intersect 191s 191s The following objects are masked from ‘package:IRanges’: 191s 191s collapse, desc, intersect, setdiff, slice, union 191s 191s The following objects are masked from ‘package:S4Vectors’: 191s 191s first, intersect, rename, setdiff, setequal, union 191s 191s The following object is masked from ‘package:matrixStats’: 191s 191s count 191s 191s The following object is masked from ‘package:Biobase’: 191s 191s combine 191s 191s The following objects are masked from ‘package:BiocGenerics’: 191s 191s combine, intersect, setdiff, union 191s 191s The following objects are masked from ‘package:stats’: 191s 191s filter, lag 191s 191s The following objects are masked from ‘package:base’: 191s 191s intersect, setdiff, setequal, union 191s 193s > 193s find: ‘tests’: No such file or directory 194s autopkgtest [04:17:38]: test pkg-r-autopkgtest: -----------------------] 194s autopkgtest [04:17:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 194s pkg-r-autopkgtest PASS 194s autopkgtest [04:17:38]: @@@@@@@@@@@@@@@@@@@@ summary 194s pkg-r-autopkgtest PASS