0s autopkgtest [04:12:26]: starting date and time: 2026-02-10 04:12:26+0000 0s autopkgtest [04:12:26]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:12:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gdqc3q1c/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-ggbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-7.secgroup --name adt-resolute-amd64-r-bioc-ggbio-20260210-041226-juju-7f2275-prod-proposed-migration-environment-2-a8741d1d-9442-4933-a564-716e2ac79f32 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-r-bioc-ggbio-20260210-041226-juju-7f2275-prod-proposed-migration-environment-2-a8741d1d-9442-4933-a564-716e2ac79f32 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 75s autopkgtest [04:13:41]: testbed dpkg architecture: amd64 75s autopkgtest [04:13:41]: testbed apt version: 3.1.14 75s autopkgtest [04:13:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s autopkgtest [04:13:41]: testbed release detected to be: None 76s autopkgtest [04:13:42]: updating testbed package index (apt update) 76s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 77s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB] 77s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB] 77s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB] 77s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB] 77s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B] 77s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 77s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB] 78s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB] 78s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB] 78s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B] 78s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 78s Fetched 5189 kB in 2s (3233 kB/s) 79s Reading package lists... 79s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 81s The following package was automatically installed and is no longer required: 81s libpython3.13 81s Use 'sudo apt autoremove' to remove it. 81s The following NEW packages will be installed: 81s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 81s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 81s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 81s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 81s The following packages will be upgraded: 81s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 81s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 81s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 81s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 81s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 81s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 81s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 81s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 81s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 81s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 81s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 81s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 81s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 81s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 81s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 81s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 81s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 237 MB of archives. 81s After this operation, 339 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 81s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 81s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 81s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 81s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 81s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 81s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 81s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 81s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 81s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 81s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 81s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 81s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 81s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 81s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 81s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 81s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 81s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 81s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 81s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 81s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 81s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 81s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 81s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 81s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 81s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 81s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 81s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 81s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 81s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 81s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 81s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 81s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 81s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 81s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 81s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 81s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 81s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 81s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 81s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 81s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 81s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 81s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 81s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 81s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 81s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 81s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 81s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 81s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 81s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 81s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 81s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 81s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 81s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 81s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 81s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 81s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 81s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 81s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 81s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 81s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 81s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 81s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 81s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 81s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 81s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 81s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 81s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 81s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 81s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 81s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 81s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 81s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 81s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 81s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 81s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 82s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 82s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 84s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 84s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 84s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 84s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 84s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 84s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 84s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 84s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 84s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 84s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 84s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 84s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 85s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 85s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 85s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 85s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 85s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 85s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 85s dpkg-preconfigure: unable to re-open stdin: No such file or directory 85s Fetched 237 MB in 4s (60.3 MB/s) 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 85s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 85s Setting up debianutils (5.23.2build1) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 85s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 85s Setting up dash (0.5.12-12ubuntu3) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 85s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 85s Setting up findutils (4.10.0-3build2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 85s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 85s Setting up sed (4.9-2build3) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 85s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 85s Setting up tar (1.35+dfsg-3.1build2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 85s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 85s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 85s Selecting previously unselected package gcc-16-base:amd64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 86s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 86s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 86s (Reading database ... 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(7.7.0+6.19.0-3.3) ... 93s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 93s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 93s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 93s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 93s Setting up libsensors-config (1:3.6.2-2build1) ... 93s Setting up less (668-1build1) ... 93s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 93s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 93s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 93s amd64-microcode: microcode will be updated at next boot 93s Setting up man-db (2.13.1-1build1) ... 93s Updating database of manual pages ... 95s man-db.service is a disabled or a static unit not running, not starting it. 95s Setting up libjansson4:amd64 (2.14-2build4) ... 95s Setting up libglib2.0-data (2.87.2-2) ... 95s Setting up pollinate (4.33-4ubuntu5) ... 105s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 105s Setting up libwrap0:amd64 (7.6.q-36build2) ... 105s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 106s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 106s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 106s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 106s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 106s Setting up patch (2.8-2build1) ... 106s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 106s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 106s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 106s Setting up lsof (4.99.4+dfsg-2build2) ... 106s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 106s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 106s Setting up dracut-install (109-11ubuntu1) ... 106s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 107s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 107s Setting up pnp.ids (0.394-1build1) ... 107s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 107s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 107s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 107s Setting up mawk (1.3.4.20260129-1) ... 107s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 107s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 107s Setting up linux-image-virtual (6.19.0-3.3) ... 107s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 107s Setting up libbsd0:amd64 (0.12.2-2build2) ... 107s Setting up libdrm-common (2.4.131-1) ... 107s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 107s Setting up dbus-bin (1.16.2-2ubuntu3) ... 107s Setting up libonig5:amd64 (6.9.10-1build1) ... 107s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 107s Setting up ethtool (1:6.15-3build1) ... 107s Setting up python3-referencing (0.36.2-1ubuntu2) ... 107s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 107s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 107s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 107s Setting up tcpdump (4.99.5-2ubuntu3) ... 107s Setting up linux-image-generic (6.19.0-3.3) ... 107s Setting up wget (1.25.0-2ubuntu4) ... 107s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 107s Setting up iptables (1.8.11-2ubuntu3) ... 107s Setting up iproute2 (6.18.0-1ubuntu1) ... 107s Setting up linux-headers-generic (6.19.0-3.3) ... 107s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 107s Setting up hwdata (0.394-1build1) ... 107s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 107s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 107s No schema files found: doing nothing. 107s Setting up dbus (1.16.2-2ubuntu3) ... 107s A reboot is required to replace the running dbus-daemon. 107s Please reboot the system when convenient. 107s Setting up shared-mime-info (2.4-5build3) ... 108s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 108s Setting up pciutils (1:3.14.0-1build2) ... 108s Setting up python3-markdown-it (3.0.0-3build1) ... 108s Setting up libdrm2:amd64 (2.4.131-1) ... 108s Setting up libpython3.14:amd64 (3.14.2-1) ... 108s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 108s Setting up linux-tools-common (6.19.0-3.3) ... 108s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 108s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 108s Setting up apt (3.1.15) ... 108s Setting up linux-headers-virtual (6.19.0-3.3) ... 108s Setting up linux-generic (6.19.0-3.3) ... 108s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 108s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 108s Setting up ubuntu-standard (1.564) ... 108s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 108s Setting up linux-virtual (6.19.0-3.3) ... 108s Setting up linux-perf (6.19.0-3.3) ... 108s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 108s Processing triggers for debianutils (5.23.2build1) ... 109s Processing triggers for install-info (7.2-5) ... 109s Processing triggers for initramfs-tools (0.150ubuntu7) ... 109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 113s Processing triggers for libc-bin (2.42-2ubuntu4) ... 113s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 113s /etc/kernel/postinst.d/initramfs-tools: 113s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 117s /etc/kernel/postinst.d/zz-update-grub: 117s Sourcing file `/etc/default/grub' 117s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 117s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 117s Generating grub configuration file ... 117s Found linux image: /boot/vmlinuz-6.19.0-3-generic 117s Found initrd image: /boot/initrd.img-6.19.0-3-generic 117s Found linux image: /boot/vmlinuz-6.18.0-9-generic 117s Found initrd image: /boot/initrd.img-6.18.0-9-generic 117s Warning: os-prober will not be executed to detect other bootable partitions. 117s Systems on them will not be added to the GRUB boot configuration. 117s Check GRUB_DISABLE_OS_PROBER documentation entry. 117s Adding boot menu entry for UEFI Firmware Settings ... 117s done 117s autopkgtest [04:14:23]: upgrading testbed (apt dist-upgrade and autopurge) 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 118s The following package was automatically installed and is no longer required: 118s libpython3.13 118s Use 'sudo apt autoremove' to remove it. 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s Solving dependencies... 119s The following packages will be REMOVED: 119s libpython3.13* 119s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 119s After this operation, 7599 kB disk space will be freed. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 119s Removing libpython3.13:amd64 (3.13.11-1) ... 119s Processing triggers for libc-bin (2.42-2ubuntu4) ... 119s autopkgtest [04:14:25]: rebooting testbed after setup commands that affected boot 148s autopkgtest [04:14:54]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 150s autopkgtest [04:14:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ggbio 151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-ggbio 1.54.0-2 (dsc) [2563 B] 151s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-ggbio 1.54.0-2 (tar) [3251 kB] 151s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-ggbio 1.54.0-2 (diff) [5724 B] 151s gpgv: Signature made Tue Jan 14 10:25:42 2025 UTC 151s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 151s gpgv: issuer "crusoe@debian.org" 151s gpgv: Can't check signature: No public key 151s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ggbio_1.54.0-2.dsc: no acceptable signature found 151s autopkgtest [04:14:57]: testing package r-bioc-ggbio version 1.54.0-2 152s autopkgtest [04:14:58]: build not needed 154s autopkgtest [04:15:00]: test pkg-r-autopkgtest: preparing testbed 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Solving dependencies... 154s The following NEW packages will be installed: 154s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 154s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 154s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 154s g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 154s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 154s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 154s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 154s libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 154s libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 154s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 154s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 154s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 154s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 154s libjs-highlight.js libjs-jquery libjs-jquery-datatables 154s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 154s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 154s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 154s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 154s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 154s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 154s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 154s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 154s libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 154s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 154s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 154s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev 154s libzzip-0-13t64 linux-libc-dev node-bootstrap-sass node-html5shiv 154s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 154s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 154s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 154s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 154s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 154s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 154s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 154s r-bioc-ggbio r-bioc-graph r-bioc-iranges r-bioc-keggrest 154s r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics r-bioc-rbgl 154s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 154s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 154s r-bioc-txdbmaker r-bioc-ucsc.utils r-bioc-variantannotation r-bioc-xvector 154s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 154s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 154s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 154s r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron r-cran-cli 154s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 154s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 154s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 154s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 154s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 154s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 154s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 154s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 154s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 154s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp 154s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 154s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 154s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 154s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 154s r-cran-mime r-cran-nnet r-cran-openssl r-cran-patchwork r-cran-pillar 154s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 154s r-cran-plogr r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits 154s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 154s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 154s r-cran-rcurl r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 154s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 154s r-cran-rstudioapi r-cran-s7 r-cran-sass r-cran-scales r-cran-shiny 154s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 154s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 154s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 154s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 154s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 154s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 154s xdg-utils zip zlib1g-dev 155s 0 upgraded, 341 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 513 MB of archives. 155s After this operation, 1505 MB of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 155s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 155s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 155s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 155s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 155s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 155s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 155s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 155s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 155s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 155s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 155s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 155s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 155s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 155s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 155s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 155s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 155s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 155s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 155s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 156s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 156s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 156s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 156s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 156s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 156s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 156s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 156s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 156s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 156s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 156s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 156s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 156s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 156s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 156s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 156s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 156s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 156s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 157s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 157s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB] 157s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 157s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 157s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 157s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 157s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 157s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 157s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 157s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 157s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 157s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 157s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 157s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 157s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 157s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 157s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB] 157s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B] 157s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 157s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 157s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 157s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 157s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 157s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 157s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 157s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 157s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 157s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 157s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 157s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 157s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 157s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 158s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 158s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 158s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 158s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 158s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 158s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 158s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 158s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 158s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 158s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 158s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 158s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 158s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 158s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 158s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 158s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 158s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 158s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 158s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 158s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 158s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB] 158s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 158s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 158s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 158s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 158s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB] 158s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 158s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 158s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 158s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 158s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 158s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 158s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 158s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 158s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 158s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 158s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 158s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 158s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 158s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 158s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 158s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB] 158s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB] 158s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 158s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 158s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 158s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB] 158s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 158s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB] 158s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB] 158s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 158s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 158s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 158s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 158s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 158s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 158s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 158s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB] 158s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 158s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB] 158s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 158s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 158s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB] 158s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 158s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 158s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 158s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 158s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 159s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 159s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 159s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 159s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 160s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 160s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 160s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 160s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 160s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 160s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 160s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 160s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 160s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 160s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 160s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 160s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 160s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB] 160s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 160s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 160s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 160s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 160s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 160s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB] 160s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 160s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 160s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 160s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 160s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 160s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 160s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 160s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 160s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 160s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 160s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 160s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 160s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 160s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 160s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 160s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 160s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 160s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 160s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 160s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 161s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 161s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 161s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 161s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 161s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 161s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 161s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 161s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 161s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 161s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 161s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 161s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 161s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 161s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 161s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 161s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 161s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 161s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 161s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 161s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 161s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 162s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB] 162s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 162s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 162s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 162s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 162s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 162s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 162s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 162s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 162s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 162s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 162s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 162s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 162s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 162s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 162s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 162s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 162s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 162s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 162s Get:222 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 162s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 162s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 162s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 162s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 162s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 162s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 162s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 162s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 162s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 162s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 162s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 162s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 162s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 162s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 162s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 162s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 162s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 162s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 162s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 162s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 162s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 162s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 162s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 162s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB] 162s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB] 163s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB] 163s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB] 163s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB] 163s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 165s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 165s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 165s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB] 165s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 165s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 165s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB] 165s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB] 165s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 165s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 165s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 165s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 165s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 165s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 165s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 165s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 165s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB] 166s Get:268 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 166s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB] 166s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 166s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 166s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 166s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB] 166s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 166s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreign amd64 0.8.91-1 [245 kB] 166s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 166s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 166s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 166s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 166s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 166s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rstudioapi all 0.18.0-1 [326 kB] 166s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB] 166s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 167s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 167s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-chron amd64 2.3-62-1build1 [189 kB] 167s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 167s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 167s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 167s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 167s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 167s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-latticeextra all 0.6-31-1 [2177 kB] 168s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-acepack amd64 1.6.3-1 [86.2 kB] 168s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 169s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hmisc amd64 5.2-5-2 [3608 kB] 169s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 169s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 169s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 169s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 169s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 169s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB] 169s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 170s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 170s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 170s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 170s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 170s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 170s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB] 170s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 170s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 170s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 170s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rtracklayer amd64 1.66.0-3 [5225 kB] 171s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 171s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 171s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB] 171s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 171s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 171s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB] 171s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 171s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB] 171s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-graph amd64 1.84.1-2 [1298 kB] 171s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 172s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-txdbmaker all 1.2.1+ds-2 [875 kB] 172s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-organismdbi all 1.48.0+dfsg-2 [452 kB] 172s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ellipsis amd64 0.3.2-2build1 [36.0 kB] 172s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-forcats all 1.0.1-1 [368 kB] 172s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 172s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggstats all 0.7.0-2 [1100 kB] 172s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggally all 2.2.1-1 [2022 kB] 172s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ggbio all 1.54.0-2 [2941 kB] 172s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 172s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 172s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 172s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 172s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 172s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 172s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 172s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 172s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 172s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 172s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 172s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 173s Preconfiguring packages ... 173s Fetched 513 MB in 18s (28.5 MB/s) 173s Selecting previously unselected package libc-dev-bin. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 173s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 173s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 173s Selecting previously unselected package linux-libc-dev:amd64. 173s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ... 173s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 173s Selecting previously unselected package libcrypt-dev:amd64. 173s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 173s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 173s Selecting previously unselected package rpcsvc-proto. 173s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 173s Unpacking rpcsvc-proto (1.4.3-1build1) ... 173s Selecting previously unselected package libc6-dev:amd64. 173s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ... 173s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 173s Selecting previously unselected package libisl23:amd64. 173s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ... 173s Unpacking libisl23:amd64 (0.27-1build1) ... 173s Selecting previously unselected package libmpc3:amd64. 173s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ... 173s Unpacking libmpc3:amd64 (1.3.1-2) ... 173s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 173s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 173s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 173s Selecting previously unselected package cpp-15. 173s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 173s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 173s Selecting previously unselected package cpp-x86-64-linux-gnu. 173s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 173s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 173s Selecting previously unselected package cpp. 173s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 173s Unpacking cpp (4:15.2.0-4ubuntu1) ... 173s Selecting previously unselected package libcc1-0:amd64. 173s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 173s Selecting previously unselected package libgomp1:amd64. 173s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ... 173s Selecting previously unselected package libitm1:amd64. 173s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 173s Selecting previously unselected package libasan8:amd64. 173s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 173s Selecting previously unselected package liblsan0:amd64. 173s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 173s Selecting previously unselected package libtsan2:amd64. 173s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 173s Selecting previously unselected package libubsan1:amd64. 173s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 173s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 174s Selecting previously unselected package libhwasan0:amd64. 174s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 174s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 174s Selecting previously unselected package libquadmath0:amd64. 174s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 174s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 174s Selecting previously unselected package libgcc-15-dev:amd64. 174s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 174s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package gcc-15. 174s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package gcc-x86-64-linux-gnu. 174s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 174s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 174s Selecting previously unselected package gcc. 174s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 174s Unpacking gcc (4:15.2.0-4ubuntu1) ... 174s Selecting previously unselected package libstdc++-15-dev:amd64. 174s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package g++-15-x86-64-linux-gnu. 174s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package g++-15. 174s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking g++-15 (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package g++-x86-64-linux-gnu. 174s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 174s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 174s Selecting previously unselected package g++. 174s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 174s Unpacking g++ (4:15.2.0-4ubuntu1) ... 174s Selecting previously unselected package build-essential. 174s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ... 174s Unpacking build-essential (12.12ubuntu2) ... 174s Selecting previously unselected package dctrl-tools. 174s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ... 174s Unpacking dctrl-tools (2.24-3build4) ... 174s Selecting previously unselected package fonts-dejavu-mono. 174s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 174s Unpacking fonts-dejavu-mono (2.37-8build1) ... 174s Selecting previously unselected package fonts-dejavu-core. 174s Preparing to unpack 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gfortran-15-x86-64-linux-gnu. 175s Preparing to unpack .../043-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package gfortran-15. 175s Preparing to unpack .../044-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package gfortran-x86-64-linux-gnu. 175s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 175s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package gfortran. 175s Preparing to unpack .../046-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 175s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package icu-devtools. 175s Preparing to unpack .../047-icu-devtools_78.2-1ubuntu1_amd64.deb ... 175s Unpacking icu-devtools (78.2-1ubuntu1) ... 175s Selecting previously unselected package javascript-common. 175s Preparing to unpack .../048-javascript-common_12+nmu1build1_all.deb ... 175s Unpacking javascript-common (12+nmu1build1) ... 175s Selecting previously unselected package libio-string-perl. 175s Preparing to unpack .../049-libio-string-perl_1.08-4_all.deb ... 175s Unpacking libio-string-perl (1.08-4) ... 175s Selecting previously unselected package liblatex-tounicode-perl. 175s Preparing to unpack .../050-liblatex-tounicode-perl_1.93-1_all.deb ... 175s Unpacking liblatex-tounicode-perl (1.93-1) ... 175s Selecting previously unselected package libbibtex-parser-perl. 175s Preparing to unpack .../051-libbibtex-parser-perl_1.93+dfsg-1_all.deb ... 175s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ... 175s Selecting previously unselected package libblas3:amd64. 175s Preparing to unpack .../052-libblas3_3.12.1-7ubuntu1_amd64.deb ... 175s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 175s Selecting previously unselected package libblas-dev:amd64. 175s Preparing to unpack .../053-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 175s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 175s Selecting previously unselected package libboost1.90-dev:amd64. 175s Preparing to unpack .../054-libboost1.90-dev_1.90.0-2ubuntu1_amd64.deb ... 175s Unpacking libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ... 176s Selecting previously unselected package libboost-dev:amd64. 176s Preparing to unpack .../055-libboost-dev_1.90.0.0ubuntu3_amd64.deb ... 176s Unpacking libboost-dev:amd64 (1.90.0.0ubuntu3) ... 176s Selecting previously unselected package libbz2-dev:amd64. 176s Preparing to unpack .../056-libbz2-dev_1.0.8-6build2_amd64.deb ... 176s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 176s Selecting previously unselected package libpixman-1-0:amd64. 176s Preparing to unpack .../057-libpixman-1-0_0.46.4-1_amd64.deb ... 176s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 176s Selecting previously unselected package libxcb-render0:amd64. 176s Preparing to unpack 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Selecting previously unselected package libicu-dev:amd64. 176s Preparing to unpack .../069-libicu-dev_78.2-1ubuntu1_amd64.deb ... 176s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 176s Selecting previously unselected package libjpeg-turbo8:amd64. 176s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 176s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 176s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 176s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ... 176s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 176s Selecting previously unselected package libjpeg8:amd64. 176s Preparing to unpack .../072-libjpeg8_8c-2ubuntu12_amd64.deb ... 176s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 176s Selecting previously unselected package libjpeg8-dev:amd64. 176s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu12_amd64.deb ... 176s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ... 176s Selecting previously unselected package libjpeg-dev:amd64. 176s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu12_amd64.deb ... 176s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ... 176s Selecting previously unselected package libjs-bootstrap. 176s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 176s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 176s Selecting previously unselected package libjs-popper.js. 176s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 176s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 176s Selecting previously unselected package libjs-bootstrap4. 176s Preparing to unpack .../077-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 176s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 176s Selecting previously unselected package libjs-d3. 176s Preparing to unpack .../078-libjs-d3_3.5.17-4build1_all.deb ... 176s Unpacking libjs-d3 (3.5.17-4build1) ... 176s Selecting previously unselected package libjs-es5-shim. 176s Preparing to unpack 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unpack .../094-liblua5.4-0_5.4.8-1_amd64.deb ... 176s Unpacking liblua5.4-0:amd64 (5.4.8-1) ... 176s Selecting previously unselected package libmpfi0:amd64. 177s Preparing to unpack .../095-libmpfi0_1.5.4+ds-4build1_amd64.deb ... 177s Unpacking libmpfi0:amd64 (1.5.4+ds-4build1) ... 177s Selecting previously unselected package libncurses-dev:amd64. 177s Preparing to unpack .../096-libncurses-dev_6.6+20251231-1_amd64.deb ... 177s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 177s Selecting previously unselected package libthai-data. 177s Preparing to unpack .../097-libthai-data_0.1.30-1_all.deb ... 177s Unpacking libthai-data (0.1.30-1) ... 177s Selecting previously unselected package libthai0:amd64. 177s Preparing to unpack .../098-libthai0_0.1.30-1_amd64.deb ... 177s Unpacking libthai0:amd64 (0.1.30-1) ... 177s Selecting previously unselected package libpango-1.0-0:amd64. 177s Preparing to unpack .../099-libpango-1.0-0_1.57.0-1_amd64.deb ... 177s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ... 177s Selecting previously unselected package libpangoft2-1.0-0:amd64. 177s Preparing to unpack .../100-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 177s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 177s Selecting previously unselected package libpangocairo-1.0-0:amd64. 177s Preparing to unpack .../101-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 177s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 177s Selecting previously unselected package libpaper2:amd64. 177s Preparing to unpack .../102-libpaper2_2.2.5-0.3build1_amd64.deb ... 177s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 177s Selecting previously unselected package libpaper-utils. 177s Preparing to unpack .../103-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 177s Unpacking libpaper-utils (2.2.5-0.3build1) ... 177s Selecting previously unselected package libpcre2-16-0:amd64. 177s Preparing to unpack .../104-libpcre2-16-0_10.46-1_amd64.deb ... 177s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 177s Selecting previously unselected package libpcre2-32-0:amd64. 177s Preparing to unpack .../105-libpcre2-32-0_10.46-1_amd64.deb ... 177s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 177s Selecting previously unselected package libpcre2-posix3:amd64. 177s Preparing to unpack .../106-libpcre2-posix3_10.46-1_amd64.deb ... 177s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 177s Selecting previously unselected package libpcre2-dev:amd64. 177s Preparing to unpack .../107-libpcre2-dev_10.46-1_amd64.deb ... 177s Unpacking libpcre2-dev:amd64 (10.46-1) ... 177s Selecting previously unselected package libpkgconf3:amd64. 177s Preparing to unpack .../108-libpkgconf3_1.8.1-4build1_amd64.deb ... 177s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 177s Selecting previously unselected package zlib1g-dev:amd64. 177s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 177s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 177s Selecting previously unselected package libpng-dev:amd64. 177s Preparing to unpack .../110-libpng-dev_1.6.54-1_amd64.deb ... 177s Unpacking libpng-dev:amd64 (1.6.54-1) ... 177s Selecting previously unselected package libpotrace0:amd64. 177s Preparing to unpack .../111-libpotrace0_1.16-2build2_amd64.deb ... 177s Unpacking libpotrace0:amd64 (1.16-2build2) ... 177s Selecting previously unselected package libptexenc1:amd64. 177s Preparing to unpack .../112-libptexenc1_2025.20250727.75242+ds-5build1_amd64.deb ... 177s Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-5build1) ... 177s Selecting previously unselected package libreadline-dev:amd64. 177s Preparing to unpack .../113-libreadline-dev_8.3-3_amd64.deb ... 177s Unpacking libreadline-dev:amd64 (8.3-3) ... 177s Selecting previously unselected package libsharpyuv0:amd64. 177s Preparing to unpack .../114-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libsm6:amd64. 177s Preparing to unpack .../115-libsm6_2%3a1.2.6-1build1_amd64.deb ... 177s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 177s Selecting previously unselected package libsynctex2:amd64. 177s Preparing to unpack .../116-libsynctex2_2025.20250727.75242+ds-5build1_amd64.deb ... 177s Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-5build1) ... 177s Selecting previously unselected package libtcl8.6:amd64. 177s Preparing to unpack .../117-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 177s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 177s Selecting previously unselected package libteckit0:amd64. 177s Preparing to unpack .../118-libteckit0_2.5.13+ds-1_amd64.deb ... 177s Unpacking libteckit0:amd64 (2.5.13+ds-1) ... 177s Selecting previously unselected package libtexlua53-5:amd64. 177s Preparing to unpack .../119-libtexlua53-5_2025.20250727.75242+ds-5build1_amd64.deb ... 177s Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-5build1) ... 177s Selecting previously unselected package libjbig0:amd64. 177s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 177s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 177s Selecting previously unselected package libwebp7:amd64. 177s Preparing to unpack .../121-libwebp7_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libtiff6:amd64. 177s Preparing to unpack .../122-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 177s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 177s Selecting previously unselected package libxft2:amd64. 177s Preparing to unpack .../123-libxft2_2.3.6-1build2_amd64.deb ... 177s Unpacking libxft2:amd64 (2.3.6-1build2) ... 177s Selecting previously unselected package libxss1:amd64. 177s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build4_amd64.deb ... 177s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 177s Selecting previously unselected package libtk8.6:amd64. 177s Preparing to unpack .../125-libtk8.6_8.6.17-1_amd64.deb ... 177s Unpacking libtk8.6:amd64 (8.6.17-1) ... 177s Selecting previously unselected package libxt6t64:amd64. 177s Preparing to unpack .../126-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 177s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 177s Selecting previously unselected package libxmu6:amd64. 177s Preparing to unpack .../127-libxmu6_2%3a1.1.3-4_amd64.deb ... 177s Unpacking libxmu6:amd64 (2:1.1.3-4) ... 177s Selecting previously unselected package libxpm4:amd64. 177s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 177s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 177s Selecting previously unselected package libxaw7:amd64. 177s Preparing to unpack .../129-libxaw7_2%3a1.0.16-1build1_amd64.deb ... 177s Unpacking libxaw7:amd64 (2:1.0.16-1build1) ... 177s Selecting previously unselected package libxi6:amd64. 177s Preparing to unpack .../130-libxi6_2%3a1.8.2-2_amd64.deb ... 177s Unpacking libxi6:amd64 (2:1.8.2-2) ... 177s Selecting previously unselected package libzstd-dev:amd64. 177s Preparing to unpack .../131-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 177s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 177s Selecting previously unselected package libzzip-0-13t64:amd64. 177s Preparing to unpack .../132-libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb ... 177s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... 177s Selecting previously unselected package node-bootstrap-sass. 177s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 177s Unpacking node-bootstrap-sass (3.4.3-2) ... 177s Selecting previously unselected package node-html5shiv. 177s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 177s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 177s Selecting previously unselected package node-normalize.css. 177s Preparing to unpack .../135-node-normalize.css_8.0.1-5.1_all.deb ... 177s Unpacking node-normalize.css (8.0.1-5.1) ... 177s Selecting previously unselected package pandoc-data. 177s Preparing to unpack .../136-pandoc-data_3.1.11.1-3build1_all.deb ... 177s Unpacking pandoc-data (3.1.11.1-3build1) ... 177s Selecting previously unselected package pandoc. 177s Preparing to unpack .../137-pandoc_3.1.11.1+ds-4_amd64.deb ... 177s Unpacking pandoc (3.1.11.1+ds-4) ... 178s Selecting previously unselected package zip. 178s Preparing to unpack .../138-zip_3.0-15ubuntu3_amd64.deb ... 178s Unpacking zip (3.0-15ubuntu3) ... 178s Selecting previously unselected package unzip. 178s Preparing to unpack .../139-unzip_6.0-29ubuntu1_amd64.deb ... 178s Unpacking unzip (6.0-29ubuntu1) ... 178s Selecting previously unselected package xdg-utils. 178s Preparing to unpack .../140-xdg-utils_1.2.1-2ubuntu2_all.deb ... 178s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 178s Selecting previously unselected package r-base-core. 178s Preparing to unpack .../141-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 178s Unpacking r-base-core (4.5.2-1ubuntu2) ... 178s Selecting previously unselected package liblzma-dev:amd64. 178s Preparing to unpack .../142-liblzma-dev_5.8.2-2_amd64.deb ... 178s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 178s Selecting previously unselected package pkgconf-bin. 178s Preparing to unpack .../143-pkgconf-bin_1.8.1-4build1_amd64.deb ... 178s Unpacking pkgconf-bin (1.8.1-4build1) ... 178s Selecting previously unselected package pkgconf:amd64. 178s Preparing to unpack .../144-pkgconf_1.8.1-4build1_amd64.deb ... 178s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 178s Selecting previously unselected package libtirpc-dev:amd64. 178s Preparing to unpack .../145-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 178s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 178s Selecting previously unselected package r-base-dev. 178s Preparing to unpack .../146-r-base-dev_4.5.2-1ubuntu2_all.deb ... 178s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 178s Selecting previously unselected package pkg-r-autopkgtest. 178s Preparing to unpack .../147-pkg-r-autopkgtest_20250812_all.deb ... 178s Unpacking pkg-r-autopkgtest (20250812) ... 178s Selecting previously unselected package r-bioc-biocgenerics. 178s Preparing to unpack .../148-r-bioc-biocgenerics_0.52.0-2_all.deb ... 178s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 178s Selecting previously unselected package r-bioc-biobase. 178s Preparing to unpack .../149-r-bioc-biobase_2.66.0-2_amd64.deb ... 178s Unpacking r-bioc-biobase (2.66.0-2) ... 178s Selecting previously unselected package r-bioc-s4vectors. 178s Preparing to unpack .../150-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 178s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 178s Selecting previously unselected package r-bioc-iranges. 178s Preparing to unpack .../151-r-bioc-iranges_2.40.1-3_amd64.deb ... 178s Unpacking r-bioc-iranges (2.40.1-3) ... 178s Selecting previously unselected package r-cran-dbi. 178s Preparing to unpack .../152-r-cran-dbi_1.2.3-1build1_all.deb ... 178s Unpacking r-cran-dbi (1.2.3-1build1) ... 178s Selecting previously unselected package r-cran-bit. 178s Preparing to unpack .../153-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 178s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 178s Selecting previously unselected package r-cran-bit64. 178s Preparing to unpack .../154-r-cran-bit64_4.6.0-1-4_amd64.deb ... 178s Unpacking r-cran-bit64 (4.6.0-1-4) ... 178s Selecting previously unselected package r-cran-rlang. 178s Preparing to unpack .../155-r-cran-rlang_1.1.5-3_amd64.deb ... 178s Unpacking r-cran-rlang (1.1.5-3) ... 178s Selecting previously unselected package r-cran-cli. 178s Preparing to unpack .../156-r-cran-cli_3.6.4-1_amd64.deb ... 178s Unpacking r-cran-cli (3.6.4-1) ... 178s Selecting previously unselected package r-cran-glue. 178s Preparing to unpack .../157-r-cran-glue_1.8.0-1_amd64.deb ... 178s Unpacking r-cran-glue (1.8.0-1) ... 178s Selecting previously unselected package r-cran-lifecycle. 178s Preparing to unpack .../158-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 178s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 178s Selecting previously unselected package r-cran-vctrs. 178s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 178s Unpacking r-cran-vctrs (0.6.5-1) ... 178s Selecting previously unselected package r-cran-blob. 178s Preparing to unpack .../160-r-cran-blob_1.3.0-1_all.deb ... 178s Unpacking r-cran-blob (1.3.0-1) ... 178s Selecting previously unselected package r-cran-fastmap. 178s Preparing to unpack .../161-r-cran-fastmap_1.2.0-1_amd64.deb ... 178s Unpacking r-cran-fastmap (1.2.0-1) ... 178s Selecting previously unselected package r-cran-cachem. 178s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_amd64.deb ... 178s Unpacking r-cran-cachem (1.1.0-1) ... 178s Selecting previously unselected package r-cran-memoise. 178s Preparing to unpack .../163-r-cran-memoise_2.0.1-1build1_all.deb ... 178s Unpacking r-cran-memoise (2.0.1-1build1) ... 178s Selecting previously unselected package r-cran-pkgconfig. 178s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 178s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 178s Selecting previously unselected package r-cran-plogr. 178s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build2_all.deb ... 178s Unpacking r-cran-plogr (0.2.0-3build2) ... 178s Selecting previously unselected package r-cran-cpp11. 178s Preparing to unpack .../166-r-cran-cpp11_0.5.3-1_all.deb ... 178s Unpacking r-cran-cpp11 (0.5.3-1) ... 178s Selecting previously unselected package r-cran-rsqlite. 178s Preparing to unpack .../167-r-cran-rsqlite_2.3.9-1_amd64.deb ... 178s Unpacking r-cran-rsqlite (2.3.9-1) ... 178s Selecting previously unselected package r-cran-curl. 178s Preparing to unpack .../168-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 178s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 178s Selecting previously unselected package r-cran-jsonlite. 178s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 178s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 178s Selecting previously unselected package r-cran-mime. 178s Preparing to unpack .../170-r-cran-mime_0.12-2_amd64.deb ... 178s Unpacking r-cran-mime (0.12-2) ... 178s Selecting previously unselected package r-cran-sys. 178s Preparing to unpack .../171-r-cran-sys_3.4.3-1_amd64.deb ... 178s Unpacking r-cran-sys (3.4.3-1) ... 178s Selecting previously unselected package r-cran-askpass. 178s Preparing to unpack .../172-r-cran-askpass_1.2.1-1_amd64.deb ... 178s Unpacking r-cran-askpass (1.2.1-1) ... 178s Selecting previously unselected package r-cran-openssl. 178s Preparing to unpack .../173-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 178s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 178s Selecting previously unselected package r-cran-r6. 178s Preparing to unpack .../174-r-cran-r6_2.6.1-1_all.deb ... 178s Unpacking r-cran-r6 (2.6.1-1) ... 178s Selecting previously unselected package r-cran-httr. 178s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 178s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 179s Selecting previously unselected package r-cran-png. 179s Preparing to unpack .../176-r-cran-png_0.1-8-1build2_amd64.deb ... 179s Unpacking r-cran-png (0.1-8-1build2) ... 179s Selecting previously unselected package r-bioc-zlibbioc. 179s Preparing to unpack .../177-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 179s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 179s Selecting previously unselected package r-bioc-xvector. 179s Preparing to unpack .../178-r-bioc-xvector_0.46.0-2_amd64.deb ... 179s Unpacking r-bioc-xvector (0.46.0-2) ... 179s Selecting previously unselected package r-bioc-ucsc.utils. 179s Preparing to unpack .../179-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 179s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 179s Selecting previously unselected package r-bioc-genomeinfodbdata. 179s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 179s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 179s Selecting previously unselected package r-bioc-genomeinfodb. 179s Preparing to unpack .../181-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 179s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 179s Selecting previously unselected package r-cran-crayon. 179s Preparing to unpack .../182-r-cran-crayon_1.5.3-1_all.deb ... 179s Unpacking r-cran-crayon (1.5.3-1) ... 179s Selecting previously unselected package r-bioc-biostrings. 179s Preparing to unpack .../183-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 179s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 179s Selecting previously unselected package r-bioc-keggrest. 179s Preparing to unpack .../184-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 179s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 179s Selecting previously unselected package r-bioc-annotationdbi. 179s Preparing to unpack .../185-r-bioc-annotationdbi_1.68.0-2_all.deb ... 179s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 179s Selecting previously unselected package r-bioc-genomicranges. 179s Preparing to unpack .../186-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 179s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 179s Selecting previously unselected package r-cran-lazyeval. 179s Preparing to unpack .../187-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 179s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 179s Selecting previously unselected package r-bioc-annotationfilter. 179s Preparing to unpack .../188-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 179s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 179s Selecting previously unselected package r-cran-generics. 179s Preparing to unpack .../189-r-cran-generics_0.1.4-1_all.deb ... 179s Unpacking r-cran-generics (0.1.4-1) ... 179s Selecting previously unselected package r-cran-magrittr. 179s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_amd64.deb ... 179s Unpacking r-cran-magrittr (2.0.3-1) ... 179s Selecting previously unselected package r-cran-utf8. 179s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_amd64.deb ... 179s Unpacking r-cran-utf8 (1.2.4-1) ... 179s Selecting previously unselected package r-cran-pillar. 179s Preparing to unpack .../192-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 179s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-fansi. 179s Preparing to unpack .../193-r-cran-fansi_1.0.6-2_amd64.deb ... 179s Unpacking r-cran-fansi (1.0.6-2) ... 179s Selecting previously unselected package r-cran-tibble. 179s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 179s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 179s Selecting previously unselected package r-cran-withr. 179s Preparing to unpack .../195-r-cran-withr_3.0.2+dfsg-1_all.deb ... 179s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 179s Selecting previously unselected package r-cran-tidyselect. 179s Preparing to unpack .../196-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 179s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-dplyr. 179s Preparing to unpack .../197-r-cran-dplyr_1.1.4-4_amd64.deb ... 179s Unpacking r-cran-dplyr (1.1.4-4) ... 179s Selecting previously unselected package r-cran-purrr. 179s Preparing to unpack .../198-r-cran-purrr_1.0.4-1_amd64.deb ... 179s Unpacking r-cran-purrr (1.0.4-1) ... 179s Selecting previously unselected package r-cran-stringi. 179s Preparing to unpack .../199-r-cran-stringi_1.8.4-1build2_amd64.deb ... 179s Unpacking r-cran-stringi (1.8.4-1build2) ... 179s Selecting previously unselected package r-cran-stringr. 179s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 179s Unpacking r-cran-stringr (1.5.1-1) ... 179s Selecting previously unselected package r-cran-tidyr. 179s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_amd64.deb ... 179s Unpacking r-cran-tidyr (1.3.1-1) ... 179s Selecting previously unselected package r-cran-dbplyr. 179s Preparing to unpack .../202-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ... 179s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-filelock. 179s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_amd64.deb ... 179s Unpacking r-cran-filelock (1.0.3-1) ... 179s Selecting previously unselected package r-bioc-biocfilecache. 179s Preparing to unpack .../204-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 179s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 179s Selecting previously unselected package r-bioc-biocio. 179s Preparing to unpack .../205-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 179s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 179s Selecting previously unselected package r-cran-formatr. 179s Preparing to unpack .../206-r-cran-formatr_1.14-2_all.deb ... 179s Unpacking r-cran-formatr (1.14-2) ... 179s Selecting previously unselected package r-cran-lambda.r. 179s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build2_all.deb ... 179s Unpacking r-cran-lambda.r (1.2.4-2build2) ... 179s Selecting previously unselected package r-cran-futile.options. 179s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build2_all.deb ... 179s Unpacking r-cran-futile.options (1.0.1-3build2) ... 179s Selecting previously unselected package r-cran-futile.logger. 179s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build2_all.deb ... 179s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 179s Selecting previously unselected package r-cran-snow. 179s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 179s Unpacking r-cran-snow (1:0.4.4-2build1) ... 179s Selecting previously unselected package r-cran-codetools. 179s Preparing to unpack .../211-r-cran-codetools_0.2-20-1build1_all.deb ... 179s Unpacking r-cran-codetools (0.2-20-1build1) ... 179s Selecting previously unselected package r-cran-bh. 179s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 179s Unpacking r-cran-bh (1.84.0-1) ... 179s Selecting previously unselected package r-bioc-biocparallel. 179s Preparing to unpack .../213-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 179s Unpacking r-bioc-biocparallel (1.40.0-2) ... 179s Selecting previously unselected package r-cran-base64enc. 179s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 179s Unpacking r-cran-base64enc (0.1-3-3build1) ... 179s Selecting previously unselected package r-cran-digest. 179s Preparing to unpack .../215-r-cran-digest_0.6.39-1_amd64.deb ... 179s Unpacking r-cran-digest (0.6.39-1) ... 179s Selecting previously unselected package r-cran-htmltools. 179s Preparing to unpack .../216-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 179s Unpacking r-cran-htmltools (0.5.8.1-1) ... 179s Selecting previously unselected package r-cran-evaluate. 179s Preparing to unpack .../217-r-cran-evaluate_1.0.5-1_all.deb ... 179s Unpacking r-cran-evaluate (1.0.5-1) ... 179s Selecting previously unselected package r-cran-xfun. 179s Preparing to unpack .../218-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 179s Unpacking r-cran-xfun (0.55+dfsg-1) ... 179s Selecting previously unselected package r-cran-highr. 179s Preparing to unpack .../219-r-cran-highr_0.11+dfsg-1_all.deb ... 179s Unpacking r-cran-highr (0.11+dfsg-1) ... 179s Selecting previously unselected package r-cran-yaml. 179s Preparing to unpack .../220-r-cran-yaml_2.3.10-1_amd64.deb ... 179s Unpacking r-cran-yaml (2.3.10-1) ... 179s Selecting previously unselected package libjs-mathjax. 179s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 179s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 180s Selecting previously unselected package r-cran-knitr. 180s Preparing to unpack .../222-r-cran-knitr_1.51+dfsg-1_all.deb ... 180s Unpacking r-cran-knitr (1.51+dfsg-1) ... 180s Selecting previously unselected package r-cran-jquerylib. 180s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 180s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 180s Selecting previously unselected package r-cran-fs. 180s Preparing to unpack .../224-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 180s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 180s Selecting previously unselected package r-cran-rappdirs. 180s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 180s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 180s Selecting previously unselected package r-cran-sass. 180s Preparing to unpack .../226-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 180s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 180s Selecting previously unselected package r-cran-bslib. 180s Preparing to unpack .../227-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 180s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 180s Selecting previously unselected package r-cran-fontawesome. 180s Preparing to unpack .../228-r-cran-fontawesome_0.5.3-1_all.deb ... 180s Unpacking r-cran-fontawesome (0.5.3-1) ... 180s Selecting previously unselected package r-cran-tinytex. 180s Preparing to unpack .../229-r-cran-tinytex_0.58-1_all.deb ... 180s Unpacking r-cran-tinytex (0.58-1) ... 180s Selecting previously unselected package libjs-modernizr. 180s Preparing to unpack .../230-libjs-modernizr_3.13.0-0.1build1_all.deb ... 180s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 180s Selecting previously unselected package r-cran-littler. 180s Preparing to unpack .../231-r-cran-littler_0.3.22-1_amd64.deb ... 180s Unpacking r-cran-littler (0.3.22-1) ... 180s Selecting previously unselected package r-cran-pkgkitten. 180s Preparing to unpack .../232-r-cran-pkgkitten_0.2.4-1_all.deb ... 180s Unpacking r-cran-pkgkitten (0.2.4-1) ... 180s Selecting previously unselected package r-cran-rcpp. 180s Preparing to unpack .../233-r-cran-rcpp_1.1.0-1_amd64.deb ... 180s Unpacking r-cran-rcpp (1.1.0-1) ... 180s Selecting previously unselected package r-cran-later. 180s Preparing to unpack .../234-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 180s Unpacking r-cran-later (1.4.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-promises. 180s Preparing to unpack .../235-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 180s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 180s Selecting previously unselected package r-cran-httpuv. 180s Preparing to unpack .../236-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 180s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 180s Selecting previously unselected package r-cran-xtable. 180s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 180s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 180s Selecting previously unselected package r-cran-sourcetools. 180s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 180s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 180s Selecting previously unselected package r-cran-commonmark. 180s Preparing to unpack .../239-r-cran-commonmark_1.9.5-1_amd64.deb ... 180s Unpacking r-cran-commonmark (1.9.5-1) ... 180s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 180s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 180s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 180s Selecting previously unselected package r-cran-shiny. 180s Preparing to unpack .../241-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 180s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 180s Selecting previously unselected package r-cran-rmarkdown. 180s Preparing to unpack .../242-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 180s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 180s Selecting previously unselected package r-cran-bookdown. 180s Preparing to unpack .../243-r-cran-bookdown_0.42+dfsg-1_all.deb ... 180s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 180s Selecting previously unselected package r-cran-biocmanager. 180s Preparing to unpack .../244-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 180s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 180s Selecting previously unselected package tex-common. 180s Preparing to unpack .../245-tex-common_6.20_all.deb ... 180s Unpacking tex-common (6.20) ... 180s Selecting previously unselected package t1utils. 180s Preparing to unpack .../246-t1utils_1.41-4build4_amd64.deb ... 180s Unpacking t1utils (1.41-4build4) ... 180s Selecting previously unselected package texlive-binaries. 180s Preparing to unpack .../247-texlive-binaries_2025.20250727.75242+ds-5build1_amd64.deb ... 180s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 180s Selecting previously unselected package texlive-base. 180s Preparing to unpack .../248-texlive-base_2025.20260124-1_all.deb ... 180s Unpacking texlive-base (2025.20260124-1) ... 181s Selecting previously unselected package texlive-latex-base. 181s Preparing to unpack .../249-texlive-latex-base_2025.20260124-1_all.deb ... 181s Unpacking texlive-latex-base (2025.20260124-1) ... 181s Selecting previously unselected package texlive-bibtex-extra. 181s Preparing to unpack .../250-texlive-bibtex-extra_2025.20260124-1_all.deb ... 181s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 182s Selecting previously unselected package r-bioc-biocversion. 182s Preparing to unpack .../251-r-bioc-biocversion_3.20.0-2_all.deb ... 182s Unpacking r-bioc-biocversion (3.20.0-2) ... 182s Selecting previously unselected package r-bioc-biocstyle. 182s Preparing to unpack .../252-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 182s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-hms. 182s Preparing to unpack .../253-r-cran-hms_1.1.4-1_all.deb ... 182s Unpacking r-cran-hms (1.1.4-1) ... 182s Selecting previously unselected package r-cran-prettyunits. 182s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 182s Unpacking r-cran-prettyunits (1.2.0-1) ... 182s Selecting previously unselected package r-cran-progress. 182s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 182s Unpacking r-cran-progress (1.2.3-1) ... 182s Selecting previously unselected package r-cran-httr2. 182s Preparing to unpack .../256-r-cran-httr2_1.1.1-2_all.deb ... 182s Unpacking r-cran-httr2 (1.1.1-2) ... 182s Selecting previously unselected package r-cran-xml2. 182s Preparing to unpack .../257-r-cran-xml2_1.4.1-1_amd64.deb ... 182s Unpacking r-cran-xml2 (1.4.1-1) ... 182s Selecting previously unselected package r-bioc-biomart. 182s Preparing to unpack .../258-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 182s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 182s Selecting previously unselected package r-cran-farver. 182s Preparing to unpack .../259-r-cran-farver_2.1.2-1_amd64.deb ... 182s Unpacking r-cran-farver (2.1.2-1) ... 182s Selecting previously unselected package r-cran-labeling. 182s Preparing to unpack .../260-r-cran-labeling_0.4.3-1_all.deb ... 182s Unpacking r-cran-labeling (0.4.3-1) ... 182s Selecting previously unselected package r-cran-rcolorbrewer. 182s Preparing to unpack .../261-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 182s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 182s Selecting previously unselected package r-cran-viridislite. 182s Preparing to unpack .../262-r-cran-viridislite_0.4.3-1_all.deb ... 182s Unpacking r-cran-viridislite (0.4.3-1) ... 182s Selecting previously unselected package r-cran-scales. 182s Preparing to unpack .../263-r-cran-scales_1.4.0-1_all.deb ... 182s Unpacking r-cran-scales (1.4.0-1) ... 182s Selecting previously unselected package r-cran-gtable. 182s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 182s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 182s Selecting previously unselected package r-cran-isoband. 182s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 182s Unpacking r-cran-isoband (0.2.7-1) ... 182s Selecting previously unselected package r-cran-s7. 182s Preparing to unpack .../266-r-cran-s7_0.2.0-1_amd64.deb ... 182s Unpacking r-cran-s7 (0.2.0-1) ... 182s Selecting previously unselected package r-cran-ggplot2. 182s Preparing to unpack .../267-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 182s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 182s Selecting previously unselected package r-cran-cluster. 182s Preparing to unpack .../268-r-cran-cluster_2.1.8.2-1_amd64.deb ... 182s Unpacking r-cran-cluster (2.1.8.2-1) ... 182s Selecting previously unselected package r-cran-lattice. 182s Preparing to unpack .../269-r-cran-lattice_0.22-7-1_amd64.deb ... 182s Unpacking r-cran-lattice (0.22-7-1) ... 182s Selecting previously unselected package r-cran-matrix. 182s Preparing to unpack .../270-r-cran-matrix_1.7-4-1_amd64.deb ... 182s Unpacking r-cran-matrix (1.7-4-1) ... 182s Selecting previously unselected package r-cran-survival. 182s Preparing to unpack .../271-r-cran-survival_3.8-6-1_amd64.deb ... 182s Unpacking r-cran-survival (3.8-6-1) ... 182s Selecting previously unselected package r-cran-rpart. 183s Preparing to unpack .../272-r-cran-rpart_4.1.24-1build1_amd64.deb ... 183s Unpacking r-cran-rpart (4.1.24-1build1) ... 183s Selecting previously unselected package r-cran-nnet. 183s Preparing to unpack .../273-r-cran-nnet_7.3-20-1_amd64.deb ... 183s Unpacking r-cran-nnet (7.3-20-1) ... 183s Selecting previously unselected package r-cran-foreign. 183s Preparing to unpack .../274-r-cran-foreign_0.8.91-1_amd64.deb ... 183s Unpacking r-cran-foreign (0.8.91-1) ... 183s Selecting previously unselected package r-cran-gridextra. 183s Preparing to unpack .../275-r-cran-gridextra_2.3-3build2_all.deb ... 183s Unpacking r-cran-gridextra (2.3-3build2) ... 183s Selecting previously unselected package r-cran-data.table. 183s Preparing to unpack .../276-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 183s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 183s Selecting previously unselected package r-cran-backports. 183s Preparing to unpack .../277-r-cran-backports_1.5.0-2_amd64.deb ... 183s Unpacking r-cran-backports (1.5.0-2) ... 183s Selecting previously unselected package r-cran-checkmate. 183s Preparing to unpack .../278-r-cran-checkmate_2.3.2-1_amd64.deb ... 183s Unpacking r-cran-checkmate (2.3.2-1) ... 183s Selecting previously unselected package r-cran-htmlwidgets. 183s Preparing to unpack .../279-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 183s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 183s Selecting previously unselected package r-cran-rstudioapi. 183s Preparing to unpack .../280-r-cran-rstudioapi_0.18.0-1_all.deb ... 183s Unpacking r-cran-rstudioapi (0.18.0-1) ... 183s Selecting previously unselected package r-cran-htmltable. 183s Preparing to unpack .../281-r-cran-htmltable_2.4.3-1_all.deb ... 183s Unpacking r-cran-htmltable (2.4.3-1) ... 183s Selecting previously unselected package r-cran-colorspace. 183s Preparing to unpack .../282-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 183s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 183s Selecting previously unselected package r-cran-formula. 183s Preparing to unpack .../283-r-cran-formula_1.2-5-1_all.deb ... 183s Unpacking r-cran-formula (1.2-5-1) ... 183s Selecting previously unselected package r-cran-chron. 183s Preparing to unpack .../284-r-cran-chron_2.3-62-1build1_amd64.deb ... 183s Unpacking r-cran-chron (2.3-62-1build1) ... 183s Selecting previously unselected package r-cran-jpeg. 183s Preparing to unpack .../285-r-cran-jpeg_0.1-10-1_amd64.deb ... 183s Unpacking r-cran-jpeg (0.1-10-1) ... 183s Selecting previously unselected package r-cran-deldir. 183s Preparing to unpack .../286-r-cran-deldir_2.0-4-1build1_amd64.deb ... 183s Unpacking r-cran-deldir (2.0-4-1build1) ... 183s Selecting previously unselected package r-cran-rcppeigen. 183s Preparing to unpack .../287-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 183s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 183s Selecting previously unselected package r-cran-interp. 183s Preparing to unpack .../288-r-cran-interp_1.1-6-1_amd64.deb ... 183s Unpacking r-cran-interp (1.1-6-1) ... 183s Selecting previously unselected package r-cran-mass. 183s Preparing to unpack .../289-r-cran-mass_7.3-65-1_amd64.deb ... 183s Unpacking r-cran-mass (7.3-65-1) ... 183s Selecting previously unselected package r-cran-latticeextra. 183s Preparing to unpack .../290-r-cran-latticeextra_0.6-31-1_all.deb ... 183s Unpacking r-cran-latticeextra (0.6-31-1) ... 183s Selecting previously unselected package r-cran-acepack. 183s Preparing to unpack .../291-r-cran-acepack_1.6.3-1_amd64.deb ... 183s Unpacking r-cran-acepack (1.6.3-1) ... 183s Selecting previously unselected package r-cran-viridis. 183s Preparing to unpack .../292-r-cran-viridis_0.6.5-1_all.deb ... 183s Unpacking r-cran-viridis (0.6.5-1) ... 183s Selecting previously unselected package r-cran-hmisc. 183s Preparing to unpack .../293-r-cran-hmisc_5.2-5-2_amd64.deb ... 183s Unpacking r-cran-hmisc (5.2-5-2) ... 183s Selecting previously unselected package r-cran-dichromat. 183s Preparing to unpack .../294-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 183s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 183s Selecting previously unselected package r-cran-matrixstats. 183s Preparing to unpack .../295-r-cran-matrixstats_1.5.0-1_amd64.deb ... 183s Unpacking r-cran-matrixstats (1.5.0-1) ... 183s Selecting previously unselected package r-bioc-matrixgenerics. 183s Preparing to unpack .../296-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 183s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 183s Selecting previously unselected package r-cran-abind. 183s Preparing to unpack .../297-r-cran-abind_1.4-8-1build1_all.deb ... 183s Unpacking r-cran-abind (1.4-8-1build1) ... 183s Selecting previously unselected package r-bioc-s4arrays. 183s Preparing to unpack .../298-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 183s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 183s Selecting previously unselected package r-bioc-sparsearray. 183s Preparing to unpack .../299-r-bioc-sparsearray_1.6.2+dfsg-2_amd64.deb ... 183s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 183s Selecting previously unselected package r-bioc-delayedarray. 183s Preparing to unpack .../300-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 183s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 183s Selecting previously unselected package r-bioc-summarizedexperiment. 183s Preparing to unpack .../301-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 183s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 183s Selecting previously unselected package r-cran-bitops. 183s Preparing to unpack .../302-r-cran-bitops_1.0-9-1_amd64.deb ... 183s Unpacking r-cran-bitops (1.0-9-1) ... 183s Selecting previously unselected package r-bioc-rhtslib. 183s Preparing to unpack .../303-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 183s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 183s Selecting previously unselected package r-bioc-rsamtools. 183s Preparing to unpack .../304-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 183s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 183s Selecting previously unselected package r-bioc-genomicalignments. 183s Preparing to unpack .../305-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 183s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 183s Selecting previously unselected package r-cran-xml. 183s Preparing to unpack .../306-r-cran-xml_3.99-0.20-1_amd64.deb ... 183s Unpacking r-cran-xml (3.99-0.20-1) ... 183s Selecting previously unselected package r-cran-rcurl. 183s Preparing to unpack .../307-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 183s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 183s Selecting previously unselected package r-cran-rjson. 183s Preparing to unpack .../308-r-cran-rjson_0.2.23-1_amd64.deb ... 183s Unpacking r-cran-rjson (0.2.23-1) ... 183s Selecting previously unselected package r-cran-restfulr. 183s Preparing to unpack .../309-r-cran-restfulr_0.0.15-1_amd64.deb ... 183s Unpacking r-cran-restfulr (0.0.15-1) ... 183s Selecting previously unselected package r-bioc-rtracklayer. 183s Preparing to unpack .../310-r-bioc-rtracklayer_1.66.0-3_amd64.deb ... 183s Unpacking r-bioc-rtracklayer (1.66.0-3) ... 183s Selecting previously unselected package 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triggers for libc-bin (2.42-2ubuntu4) ... 188s Processing triggers for man-db (2.13.1-1build1) ... 189s Processing triggers for install-info (7.2-5) ... 189s Processing triggers for tex-common (6.20) ... 190s Running updmap-sys. This may take some time... done. 190s Running mktexlsr /var/lib/texmf ... done. 190s Building format(s) --all. 204s This may take some time... done. 204s autopkgtest [04:15:50]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 204s autopkgtest [04:15:50]: test pkg-r-autopkgtest: [----------------------- 205s Test: Try to load the R library ggbio 205s 205s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 205s Copyright (C) 2025 The R Foundation for Statistical Computing 205s Platform: x86_64-pc-linux-gnu 205s 205s R is free software and comes with ABSOLUTELY NO WARRANTY. 205s You are welcome to redistribute it under certain conditions. 205s Type 'license()' or 'licence()' for distribution details. 205s 205s R is a collaborative project with many contributors. 205s Type 'contributors()' for more information and 205s 'citation()' on how to cite R or R packages in publications. 205s 205s Type 'demo()' for some demos, 'help()' for on-line help, or 205s 'help.start()' for an HTML browser interface to help. 205s Type 'q()' to quit R. 205s 205s > library('ggbio') 205s Loading required package: BiocGenerics 205s 205s Attaching package: ‘BiocGenerics’ 205s 205s The following objects are masked from ‘package:stats’: 205s 205s IQR, mad, sd, var, xtabs 205s 205s The following objects are masked from ‘package:base’: 205s 205s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 205s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 205s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 205s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 205s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 205s table, tapply, union, unique, unsplit, which.max, which.min 205s 205s Loading required package: ggplot2 205s Registered S3 method overwritten by 'GGally': 205s method from 205s +.gg ggplot2 214s > 214s Need specific help about ggbio? try mailing 214s the maintainer or visit https://lawremi.github.io/ggbio/ 214s 214s Attaching package: 'ggbio' 214s 214s The following objects are masked from 'package:ggplot2': 214s 214s geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, 214s xlim 214s 214s Test: Run tests for ggbio 214s Start: test-all.R 215s 215s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 215s Copyright (C) 2025 The R Foundation for Statistical Computing 215s Platform: x86_64-pc-linux-gnu 215s 215s R is free software and comes with ABSOLUTELY NO WARRANTY. 215s You are welcome to redistribute it under certain conditions. 215s Type 'license()' or 'licence()' for distribution details. 215s 215s R is a collaborative project with many contributors. 215s Type 'contributors()' for more information and 215s 'citation()' on how to cite R or R packages in publications. 215s 215s Type 'demo()' for some demos, 'help()' for on-line help, or 215s 'help.start()' for an HTML browser interface to help. 215s Type 'q()' to quit R. 215s 215s > library(testthat) 215s > test_check("ggbio") 215s Loading required package: ggbio 215s Loading required package: BiocGenerics 215s 215s Attaching package: ‘BiocGenerics’ 215s 215s The following objects are masked from ‘package:stats’: 215s 215s IQR, mad, sd, var, xtabs 215s 215s The following objects are masked from ‘package:base’: 215s 215s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 215s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 215s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 215s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 215s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 215s table, tapply, union, unique, unsplit, which.max, which.min 215s 215s Loading required package: ggplot2 215s Registered S3 method overwritten by 'GGally': 215s method from 215s +.gg ggplot2 224s Need specific help about ggbio? try mailing 224s the maintainer or visit https://lawremi.github.io/ggbio/ 224s 224s Attaching package: 'ggbio' 224s 224s The following objects are masked from 'package:ggplot2': 224s 224s geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, 224s xlim 224s 224s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] 224s > 225s autopkgtest [04:16:11]: test pkg-r-autopkgtest: -----------------------] 225s pkg-r-autopkgtest PASS 225s autopkgtest [04:16:11]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 225s autopkgtest [04:16:11]: @@@@@@@@@@@@@@@@@@@@ summary 225s pkg-r-autopkgtest PASS