0s autopkgtest [01:42:32]: starting date and time: 2026-02-10 01:42:32+0000 0s autopkgtest [01:42:32]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [01:42:32]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jsgos0hy/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-geneplotter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-6.secgroup --name adt-resolute-amd64-r-bioc-geneplotter-20260210-014232-juju-7f2275-prod-proposed-migration-environment-15-c66f8b4e-9c98-439a-8d26-eef1fb79b5a7 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-r-bioc-geneplotter-20260210-014232-juju-7f2275-prod-proposed-migration-environment-15-c66f8b4e-9c98-439a-8d26-eef1fb79b5a7 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 95s autopkgtest [01:44:07]: testbed dpkg architecture: amd64 95s autopkgtest [01:44:07]: testbed apt version: 3.1.14 96s autopkgtest [01:44:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s autopkgtest [01:44:08]: testbed release detected to be: None 96s autopkgtest [01:44:08]: updating testbed package index (apt update) 97s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 97s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 97s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [173 kB] 97s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1637 kB] 98s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 98s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [201 kB] 99s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [253 kB] 99s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5996 B] 99s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [316 B] 99s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1584 kB] 100s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [639 kB] 101s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [33.3 kB] 101s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [25.2 kB] 101s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4320 B] 101s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 101s Fetched 4710 kB in 4s (1130 kB/s) 102s Reading package lists... 103s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade... 104s The following package was automatically installed and is no longer required: 104s libpython3.13 104s Use 'sudo apt autoremove' to remove it. 104s The following NEW packages will be installed: 104s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 104s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 104s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 104s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 104s The following packages will be upgraded: 104s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 104s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 104s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 104s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 104s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 104s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 104s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 104s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 104s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 104s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 104s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 104s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 104s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 104s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 104s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 104s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 104s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 237 MB of archives. 104s After this operation, 339 MB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 104s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 104s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 104s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 104s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 104s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 104s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 104s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 104s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 104s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 104s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 104s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 105s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 105s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 105s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 105s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 105s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 105s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 105s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 105s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 105s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 105s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 105s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 105s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 105s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 105s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 105s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 105s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 105s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 105s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 105s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 105s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 105s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 105s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 105s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 105s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 105s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 105s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 105s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 105s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 105s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 105s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 105s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 105s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 105s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 105s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 105s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 105s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 105s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 105s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 105s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 105s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 105s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 105s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 105s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 105s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 105s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 105s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 105s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 105s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 105s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 105s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 105s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 105s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 105s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 105s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 105s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 105s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 105s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 105s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 105s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 105s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 105s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 105s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 105s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 105s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 105s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 105s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 106s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 106s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 106s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 106s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 115s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 116s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 116s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 116s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 116s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 116s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 116s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 116s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 117s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 117s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 117s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 118s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 118s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 118s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 118s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 118s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 118s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 118s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 118s dpkg-preconfigure: unable to re-open stdin: No such file or directory 118s Fetched 237 MB in 14s (17.5 MB/s) 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 118s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 118s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 118s Setting up debianutils (5.23.2build1) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 118s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 118s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 119s Setting up dash (0.5.12-12ubuntu3) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 119s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 119s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 119s Setting up findutils (4.10.0-3build2) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 119s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 119s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 119s Setting up sed (4.9-2build3) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 119s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 119s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 119s Setting up tar (1.35+dfsg-3.1build2) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 119s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 119s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 119s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 119s Selecting previously unselected package gcc-16-base:amd64. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 119s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 119s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 119s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 119s (Reading database ... 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Setting up libgpm2:amd64 (1.20.7-12build1) ... 126s Setting up libgdbm6t64:amd64 (1.26-1build1) ... 126s Setting up linux-modules-6.19.0-3-generic (6.19.0-3.3) ... 128s Setting up libgdbm-compat4t64:amd64 (1.26-1build1) ... 128s Setting up bpftool (7.7.0+6.19.0-3.3) ... 128s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 128s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 128s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 128s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 128s Setting up libsensors-config (1:3.6.2-2build1) ... 128s Setting up less (668-1build1) ... 128s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 128s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 128s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 128s amd64-microcode: microcode will be updated at next boot 128s Setting up man-db (2.13.1-1build1) ... 128s Updating database of manual pages ... 129s man-db.service is a disabled or a static unit not running, not starting it. 129s Setting up libjansson4:amd64 (2.14-2build4) ... 129s Setting up libglib2.0-data (2.87.2-2) ... 129s Setting up pollinate (4.33-4ubuntu5) ... 140s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 140s Setting up libwrap0:amd64 (7.6.q-36build2) ... 140s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 141s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 141s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 141s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 141s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 141s Setting up patch (2.8-2build1) ... 141s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 141s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 141s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 141s Setting up lsof (4.99.4+dfsg-2build2) ... 141s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 141s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 141s Setting up dracut-install (109-11ubuntu1) ... 141s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 141s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 141s Setting up pnp.ids (0.394-1build1) ... 141s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 141s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 141s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 141s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 141s Setting up mawk (1.3.4.20260129-1) ... 142s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 142s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 142s Setting up linux-image-virtual (6.19.0-3.3) ... 142s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 142s Setting up libbsd0:amd64 (0.12.2-2build2) ... 142s Setting up libdrm-common (2.4.131-1) ... 142s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 142s Setting up dbus-bin (1.16.2-2ubuntu3) ... 142s Setting up libonig5:amd64 (6.9.10-1build1) ... 142s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 142s Setting up ethtool (1:6.15-3build1) ... 142s Setting up python3-referencing (0.36.2-1ubuntu2) ... 142s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 142s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 142s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 142s Setting up tcpdump (4.99.5-2ubuntu3) ... 142s Setting up linux-image-generic (6.19.0-3.3) ... 142s Setting up wget (1.25.0-2ubuntu4) ... 142s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 142s Setting up iptables (1.8.11-2ubuntu3) ... 142s Setting up iproute2 (6.18.0-1ubuntu1) ... 142s Setting up linux-headers-generic (6.19.0-3.3) ... 142s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 142s Setting up hwdata (0.394-1build1) ... 142s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 142s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 142s No schema files found: doing nothing. 142s Setting up dbus (1.16.2-2ubuntu3) ... 142s A reboot is required to replace the running dbus-daemon. 142s Please reboot the system when convenient. 142s Setting up shared-mime-info (2.4-5build3) ... 143s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 143s Setting up pciutils (1:3.14.0-1build2) ... 143s Setting up python3-markdown-it (3.0.0-3build1) ... 143s Setting up libdrm2:amd64 (2.4.131-1) ... 143s Setting up libpython3.14:amd64 (3.14.2-1) ... 143s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 143s Setting up linux-tools-common (6.19.0-3.3) ... 143s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 143s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 143s Setting up apt (3.1.15) ... 144s Setting up linux-headers-virtual (6.19.0-3.3) ... 144s Setting up linux-generic (6.19.0-3.3) ... 144s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 144s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 144s Setting up ubuntu-standard (1.564) ... 144s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 144s Setting up linux-virtual (6.19.0-3.3) ... 144s Setting up linux-perf (6.19.0-3.3) ... 144s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 144s Processing triggers for debianutils (5.23.2build1) ... 144s Processing triggers for install-info (7.2-5) ... 144s Processing triggers for initramfs-tools (0.150ubuntu7) ... 144s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 149s Processing triggers for libc-bin (2.42-2ubuntu4) ... 149s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 149s /etc/kernel/postinst.d/initramfs-tools: 149s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 154s /etc/kernel/postinst.d/zz-update-grub: 154s Sourcing file `/etc/default/grub' 154s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 154s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 154s Generating grub configuration file ... 154s Found linux image: /boot/vmlinuz-6.19.0-3-generic 154s Found initrd image: /boot/initrd.img-6.19.0-3-generic 154s Found linux image: /boot/vmlinuz-6.18.0-9-generic 154s Found initrd image: /boot/initrd.img-6.18.0-9-generic 154s Warning: os-prober will not be executed to detect other bootable partitions. 154s Systems on them will not be added to the GRUB boot configuration. 154s Check GRUB_DISABLE_OS_PROBER documentation entry. 154s Adding boot menu entry for UEFI Firmware Settings ... 154s done 154s autopkgtest [01:45:06]: upgrading testbed (apt dist-upgrade and autopurge) 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Calculating upgrade... 156s The following package was automatically installed and is no longer required: 156s libpython3.13 156s Use 'sudo apt autoremove' to remove it. 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 158s Solving dependencies...autopkgtest [01:45:09]: rebooting testbed after setup commands that affected boot 158s 158s The following packages will be REMOVED: 158s libpython3.13* 158s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 158s After this operation, 7599 kB disk space will be freed. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 158s Removing libpython3.13:amd64 (3.13.11-1) ... 158s Processing triggers for libc-bin (2.42-2ubuntu4) ... 185s autopkgtest [01:45:37]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 187s autopkgtest [01:45:39]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geneplotter 188s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (dsc) [2263 B] 188s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (tar) [1377 kB] 188s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (diff) [3976 B] 188s gpgv: Signature made Mon Jan 13 13:50:52 2025 UTC 188s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 188s gpgv: issuer "crusoe@debian.org" 188s gpgv: Can't check signature: No public key 188s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geneplotter_1.84.0+dfsg-2.dsc: no acceptable signature found 188s autopkgtest [01:45:40]: testing package r-bioc-geneplotter version 1.84.0+dfsg-2 191s autopkgtest [01:45:43]: build not needed 196s autopkgtest [01:45:48]: test pkg-r-autopkgtest: preparing testbed 196s Reading package lists... 196s Building dependency tree... 196s Reading state information... 196s Solving dependencies... 197s The following NEW packages will be installed: 197s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 197s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 197s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 197s g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 197s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 197s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 197s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 197s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 197s libdeflate-dev libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev 197s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 197s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 197s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 197s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 197s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 197s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 197s libjs-popper.js libjs-prettify libjs-sifter.js 197s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 197s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 197s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 197s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 197s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 197s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev 197s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 197s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 197s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 197s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 linux-libc-dev 197s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 197s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 197s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 197s r-bioc-biocversion r-bioc-biostrings r-bioc-geneplotter r-bioc-genomeinfodb 197s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors 197s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 197s r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-blob 197s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark 197s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest 197s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 197s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib 197s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle 197s r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime r-cran-openssl 197s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises 197s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 197s r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-sourcetools 197s r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 197s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 197s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 197s xdg-utils zip zlib1g-dev 197s 0 upgraded, 230 newly installed, 0 to remove and 0 not upgraded. 197s Need to get 391 MB of archives. 197s After this operation, 1150 MB of additional disk space will be used. 197s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 197s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 197s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 197s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 197s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 198s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 198s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 198s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 199s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 199s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 199s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 199s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 199s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 199s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 199s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 199s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 199s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 199s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 199s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 199s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 199s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 199s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 200s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 200s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 200s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 200s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 200s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 200s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 200s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 200s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 200s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 200s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 200s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 200s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 200s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 200s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 200s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 200s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 200s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 200s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB] 200s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 200s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 200s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 201s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 201s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 201s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 201s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 201s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 201s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 201s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 201s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 201s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 201s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 201s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 201s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 201s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 201s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 201s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 201s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 201s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 201s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 201s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 201s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 201s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 201s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 201s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 201s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 201s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 201s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 201s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 201s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 201s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 201s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 201s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 201s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 201s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 202s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 202s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 202s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 202s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 202s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 202s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 202s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 202s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 202s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 202s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 202s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 202s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 202s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB] 202s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 202s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 202s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 202s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 202s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB] 202s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 202s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 202s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 202s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 202s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 202s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 202s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 202s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 202s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 202s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 202s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 202s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 202s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 202s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 202s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 202s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB] 202s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB] 202s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 202s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 202s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 202s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB] 202s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 202s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB] 202s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB] 202s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 202s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 202s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 202s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 202s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 202s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 202s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 202s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB] 202s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 202s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB] 202s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 202s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 202s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB] 202s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 202s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 202s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 202s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 202s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 203s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 203s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 203s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 203s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 203s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 203s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 203s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 203s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 203s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 203s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 203s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 203s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 203s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 203s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 203s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 203s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 203s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB] 203s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 204s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 204s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 204s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 204s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 204s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB] 204s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 204s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 204s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 204s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 204s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 204s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 204s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 204s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 204s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 204s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 204s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 204s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 204s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 204s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 204s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 204s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 204s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 204s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 204s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 204s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 204s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 204s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 204s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 204s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 204s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 205s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB] 205s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 205s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 205s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 205s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 205s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 205s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 205s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 205s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 205s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 205s Get:195 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 205s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 205s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 205s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 205s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 205s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 205s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 205s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 205s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 205s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 205s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 205s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 205s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 205s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 205s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 205s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 205s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 205s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 205s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 205s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 205s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 205s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 205s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 205s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 205s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 205s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB] 205s Get:221 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB] 205s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB] 206s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB] 206s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB] 206s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 208s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 208s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 208s Get:228 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB] 208s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 208s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB] 208s Preconfiguring packages ... 208s Fetched 391 MB in 11s (34.4 MB/s) 208s Selecting previously unselected package libc-dev-bin. 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 209s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 209s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 209s Selecting previously unselected package linux-libc-dev:amd64. 209s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ... 209s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 209s Selecting previously unselected package libcrypt-dev:amd64. 209s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 209s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 209s Selecting previously unselected package rpcsvc-proto. 209s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 209s Unpacking rpcsvc-proto (1.4.3-1build1) ... 209s Selecting previously unselected package libc6-dev:amd64. 209s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ... 209s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 209s Selecting previously unselected package libisl23:amd64. 209s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ... 209s Unpacking libisl23:amd64 (0.27-1build1) ... 209s Selecting previously unselected package libmpc3:amd64. 209s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ... 209s Unpacking libmpc3:amd64 (1.3.1-2) ... 209s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 209s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 209s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 209s Selecting previously unselected package cpp-15. 209s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 209s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 209s Selecting previously unselected package cpp-x86-64-linux-gnu. 209s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 209s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 209s Selecting previously unselected package cpp. 209s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 209s Unpacking cpp (4:15.2.0-4ubuntu1) ... 209s Selecting previously unselected package libcc1-0:amd64. 209s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libgomp1:amd64. 209s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libitm1:amd64. 209s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libasan8:amd64. 209s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package liblsan0:amd64. 209s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libtsan2:amd64. 209s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libubsan1:amd64. 209s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libhwasan0:amd64. 209s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libquadmath0:amd64. 209s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 209s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 209s Selecting previously unselected package libgcc-15-dev:amd64. 209s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 209s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 209s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 209s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 209s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 209s Selecting previously unselected package gcc-15. 209s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 209s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 209s Selecting previously unselected package gcc-x86-64-linux-gnu. 209s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 209s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 209s Selecting previously unselected package gcc. 209s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 209s Unpacking gcc (4:15.2.0-4ubuntu1) ... 209s Selecting previously unselected package libstdc++-15-dev:amd64. 209s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 209s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 210s Selecting previously unselected package g++-15-x86-64-linux-gnu. 210s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 210s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 210s Selecting previously unselected package g++-15. 210s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ... 210s Unpacking g++-15 (15.2.0-12ubuntu1) ... 210s Selecting previously unselected package g++-x86-64-linux-gnu. 210s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 210s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 210s Selecting previously unselected package g++. 210s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 210s Unpacking g++ (4:15.2.0-4ubuntu1) ... 210s Selecting previously unselected package build-essential. 210s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ... 210s Unpacking build-essential (12.12ubuntu2) ... 210s Selecting previously unselected package dctrl-tools. 210s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ... 210s Unpacking dctrl-tools (2.24-3build4) ... 210s Selecting previously unselected package fonts-dejavu-mono. 210s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 210s Unpacking fonts-dejavu-mono (2.37-8build1) ... 210s Selecting previously unselected package fonts-dejavu-core. 210s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ... 210s Unpacking fonts-dejavu-core (2.37-8build1) ... 210s Selecting previously unselected package fontconfig-config. 210s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 210s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 210s Selecting previously unselected package libfontconfig1:amd64. 210s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 210s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 210s Selecting previously unselected package fontconfig. 210s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 210s Unpacking fontconfig (2.17.1-3ubuntu1) ... 210s Selecting previously unselected package fonts-font-awesome. 210s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 210s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 210s Selecting previously unselected package fonts-glyphicons-halflings. 210s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 210s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 210s Selecting previously unselected package fonts-lmodern. 210s Preparing to unpack .../039-fonts-lmodern_2.005-1build1_all.deb ... 210s Unpacking fonts-lmodern (2.005-1build1) ... 210s Selecting previously unselected package fonts-mathjax. 210s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 210s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 210s Selecting previously unselected package libgfortran5:amd64. 210s Preparing to unpack .../041-libgfortran5_16-20260208-1ubuntu1_amd64.deb ... 210s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ... 210s Selecting previously unselected package libgfortran-15-dev:amd64. 210s Preparing to unpack .../042-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 210s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 210s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 210s Preparing to unpack .../043-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 210s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 210s Selecting previously unselected package gfortran-15. 210s Preparing to unpack .../044-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 210s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 210s Selecting previously unselected package gfortran-x86-64-linux-gnu. 210s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 210s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 210s Selecting previously unselected package gfortran. 210s Preparing to unpack .../046-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 210s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 210s Selecting previously unselected package icu-devtools. 210s Preparing to unpack .../047-icu-devtools_78.2-1ubuntu1_amd64.deb ... 210s Unpacking icu-devtools (78.2-1ubuntu1) ... 210s Selecting previously unselected package javascript-common. 210s Preparing to unpack .../048-javascript-common_12+nmu1build1_all.deb ... 210s Unpacking javascript-common (12+nmu1build1) ... 210s Selecting previously unselected package libio-string-perl. 210s Preparing to unpack .../049-libio-string-perl_1.08-4_all.deb ... 210s Unpacking libio-string-perl (1.08-4) ... 210s Selecting previously unselected package liblatex-tounicode-perl. 210s Preparing to unpack .../050-liblatex-tounicode-perl_1.93-1_all.deb ... 210s Unpacking liblatex-tounicode-perl (1.93-1) ... 210s Selecting previously unselected package libbibtex-parser-perl. 210s Preparing to unpack .../051-libbibtex-parser-perl_1.93+dfsg-1_all.deb ... 210s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ... 210s Selecting previously unselected package libblas3:amd64. 210s Preparing to unpack .../052-libblas3_3.12.1-7ubuntu1_amd64.deb ... 210s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 210s Selecting previously unselected package libblas-dev:amd64. 210s Preparing to unpack .../053-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 210s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 210s Selecting previously unselected package libbz2-dev:amd64. 210s Preparing to unpack .../054-libbz2-dev_1.0.8-6build2_amd64.deb ... 210s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 210s Selecting previously unselected package libpixman-1-0:amd64. 210s Preparing to unpack .../055-libpixman-1-0_0.46.4-1_amd64.deb ... 210s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 210s Selecting previously unselected package libxcb-render0:amd64. 211s Preparing to unpack .../056-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 211s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 211s Selecting previously unselected package libxcb-shm0:amd64. 211s Preparing to unpack .../057-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 211s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 211s Selecting previously unselected package libxrender1:amd64. 211s Preparing to unpack .../058-libxrender1_1%3a0.9.12-1_amd64.deb ... 211s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 211s Selecting previously unselected package libcairo2:amd64. 211s Preparing to unpack .../059-libcairo2_1.18.4-3_amd64.deb ... 211s Unpacking libcairo2:amd64 (1.18.4-3) ... 211s Selecting previously unselected package libdatrie1:amd64. 211s Preparing to unpack .../060-libdatrie1_0.2.14-1_amd64.deb ... 211s Unpacking libdatrie1:amd64 (0.2.14-1) ... 211s Selecting previously unselected package libdeflate0:amd64. 211s Preparing to unpack .../061-libdeflate0_1.23-2build1_amd64.deb ... 211s Unpacking libdeflate0:amd64 (1.23-2build1) ... 211s Selecting previously unselected package libdeflate-dev:amd64. 211s Preparing to unpack .../062-libdeflate-dev_1.23-2build1_amd64.deb ... 211s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 211s Selecting previously unselected package libgraphite2-3:amd64. 211s Preparing to unpack .../063-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 211s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 211s Selecting previously unselected package libharfbuzz0b:amd64. 211s Preparing to unpack .../064-libharfbuzz0b_12.3.2-1_amd64.deb ... 211s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 211s Selecting previously unselected package x11-common. 211s Preparing to unpack .../065-x11-common_1%3a7.7+24ubuntu1_all.deb ... 211s Unpacking x11-common (1:7.7+24ubuntu1) ... 211s Selecting previously unselected package libice6:amd64. 211s Preparing to unpack .../066-libice6_2%3a1.1.1-1build1_amd64.deb ... 211s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 211s Selecting previously unselected package libicu-dev:amd64. 211s Preparing to unpack .../067-libicu-dev_78.2-1ubuntu1_amd64.deb ... 211s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 211s Selecting previously unselected package libjpeg-turbo8:amd64. 211s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 211s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 211s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 211s Preparing to unpack .../069-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ... 211s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ... 211s Selecting previously unselected package libjpeg8:amd64. 211s Preparing to unpack .../070-libjpeg8_8c-2ubuntu12_amd64.deb ... 211s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 211s Selecting previously unselected package libjpeg8-dev:amd64. 211s Preparing to unpack .../071-libjpeg8-dev_8c-2ubuntu12_amd64.deb ... 211s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ... 211s Selecting previously unselected package libjpeg-dev:amd64. 211s Preparing to unpack .../072-libjpeg-dev_8c-2ubuntu12_amd64.deb ... 211s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ... 211s Selecting previously unselected package libjs-bootstrap. 211s Preparing to unpack .../073-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 211s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 211s Selecting previously unselected package libjs-popper.js. 211s Preparing to unpack .../074-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 211s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 211s Selecting previously unselected package libjs-bootstrap4. 211s Preparing to unpack .../075-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 211s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 211s Selecting previously unselected package libjs-d3. 211s Preparing to unpack .../076-libjs-d3_3.5.17-4build1_all.deb ... 211s Unpacking libjs-d3 (3.5.17-4build1) ... 211s Selecting previously unselected package libjs-es5-shim. 211s Preparing to unpack .../077-libjs-es5-shim_4.6.7-2_all.deb ... 211s Unpacking libjs-es5-shim (4.6.7-2) ... 211s Selecting previously unselected package libjs-highlight.js. 211s Preparing to unpack .../078-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 211s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 211s Selecting previously unselected package libjs-jquery. 211s Preparing to unpack .../079-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 211s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 211s Selecting previously unselected package libjs-jquery-datatables. 211s Preparing to unpack .../080-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 211s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 211s Selecting previously unselected package libjs-sifter.js. 211s Preparing to unpack .../081-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 211s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 211s Selecting previously unselected package libjs-microplugin.js. 211s Preparing to unpack .../082-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ... 211s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 211s Selecting previously unselected package libjs-jquery-selectize.js. 211s Preparing to unpack .../083-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 211s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 211s Selecting previously unselected package libjs-jquery-ui. 211s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 211s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 211s Selecting previously unselected package libjs-json. 211s Preparing to unpack .../085-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 211s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 211s Selecting previously unselected package libjs-lunr. 211s Preparing to unpack .../086-libjs-lunr_2.3.9~dfsg-2_all.deb ... 211s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 211s Selecting previously unselected package libjs-prettify. 211s Preparing to unpack .../087-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 211s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 211s Selecting previously unselected package libkpathsea6:amd64. 211s Preparing to unpack .../088-libkpathsea6_2025.20250727.75242+ds-5build1_amd64.deb ... 211s Unpacking libkpathsea6:amd64 (2025.20250727.75242+ds-5build1) ... 211s Selecting previously unselected package liblapack3:amd64. 211s Preparing to unpack .../089-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 211s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 211s Selecting previously unselected package liblapack-dev:amd64. 211s Preparing to unpack .../090-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 211s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 211s Selecting previously unselected package liblerc4:amd64. 211s Preparing to unpack .../091-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 211s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 211s Selecting previously unselected package liblua5.4-0:amd64. 211s Preparing to unpack .../092-liblua5.4-0_5.4.8-1_amd64.deb ... 211s Unpacking liblua5.4-0:amd64 (5.4.8-1) ... 211s Selecting previously unselected package libmpfi0:amd64. 211s Preparing to unpack .../093-libmpfi0_1.5.4+ds-4build1_amd64.deb ... 211s Unpacking libmpfi0:amd64 (1.5.4+ds-4build1) ... 211s Selecting previously unselected package libncurses-dev:amd64. 211s Preparing to unpack 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libpangocairo-1.0-0:amd64 (1.57.0-1) ... 211s Selecting previously unselected package libpaper2:amd64. 211s Preparing to unpack .../100-libpaper2_2.2.5-0.3build1_amd64.deb ... 211s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 211s Selecting previously unselected package libpaper-utils. 211s Preparing to unpack .../101-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 211s Unpacking libpaper-utils (2.2.5-0.3build1) ... 211s Selecting previously unselected package libpcre2-16-0:amd64. 211s Preparing to unpack .../102-libpcre2-16-0_10.46-1_amd64.deb ... 211s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 211s Selecting previously unselected package libpcre2-32-0:amd64. 211s Preparing to unpack .../103-libpcre2-32-0_10.46-1_amd64.deb ... 211s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 212s Selecting previously unselected package libpcre2-posix3:amd64. 212s Preparing to unpack .../104-libpcre2-posix3_10.46-1_amd64.deb ... 212s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 212s Selecting previously unselected package libpcre2-dev:amd64. 212s Preparing to unpack .../105-libpcre2-dev_10.46-1_amd64.deb ... 212s Unpacking libpcre2-dev:amd64 (10.46-1) ... 212s Selecting previously unselected package libpkgconf3:amd64. 212s Preparing to unpack .../106-libpkgconf3_1.8.1-4build1_amd64.deb ... 212s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 212s Selecting previously unselected package zlib1g-dev:amd64. 212s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 212s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 212s Selecting previously unselected package libpng-dev:amd64. 212s Preparing to unpack .../108-libpng-dev_1.6.54-1_amd64.deb ... 212s Unpacking libpng-dev:amd64 (1.6.54-1) ... 212s Selecting previously unselected package libpotrace0:amd64. 212s Preparing to unpack .../109-libpotrace0_1.16-2build2_amd64.deb ... 212s Unpacking libpotrace0:amd64 (1.16-2build2) ... 212s Selecting previously unselected package libptexenc1:amd64. 212s Preparing to unpack .../110-libptexenc1_2025.20250727.75242+ds-5build1_amd64.deb ... 212s Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-5build1) ... 212s Selecting previously unselected package libreadline-dev:amd64. 212s Preparing to unpack .../111-libreadline-dev_8.3-3_amd64.deb ... 212s Unpacking libreadline-dev:amd64 (8.3-3) ... 212s Selecting previously unselected package libsharpyuv0:amd64. 212s Preparing to unpack .../112-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 212s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 212s Selecting previously unselected package libsm6:amd64. 212s Preparing to unpack .../113-libsm6_2%3a1.2.6-1build1_amd64.deb ... 212s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 212s Selecting previously unselected package libsynctex2:amd64. 212s Preparing to unpack .../114-libsynctex2_2025.20250727.75242+ds-5build1_amd64.deb ... 212s Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-5build1) ... 212s Selecting previously unselected package libtcl8.6:amd64. 212s Preparing to unpack .../115-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 212s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 212s Selecting previously unselected package libteckit0:amd64. 212s Preparing to unpack .../116-libteckit0_2.5.13+ds-1_amd64.deb ... 212s Unpacking libteckit0:amd64 (2.5.13+ds-1) ... 212s Selecting previously unselected package libtexlua53-5:amd64. 212s Preparing to unpack .../117-libtexlua53-5_2025.20250727.75242+ds-5build1_amd64.deb ... 212s Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-5build1) ... 212s Selecting previously unselected package libjbig0:amd64. 212s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 212s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 212s Selecting previously unselected package libwebp7:amd64. 212s Preparing to unpack .../119-libwebp7_1.5.0-0.1build1_amd64.deb ... 212s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 212s Selecting previously unselected package libtiff6:amd64. 212s Preparing to unpack .../120-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 212s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 212s Selecting previously unselected package libxft2:amd64. 212s Preparing to unpack .../121-libxft2_2.3.6-1build2_amd64.deb ... 212s Unpacking libxft2:amd64 (2.3.6-1build2) ... 212s Selecting previously unselected package libxss1:amd64. 212s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build4_amd64.deb ... 212s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 212s Selecting previously unselected package libtk8.6:amd64. 212s Preparing to unpack .../123-libtk8.6_8.6.17-1_amd64.deb ... 212s Unpacking libtk8.6:amd64 (8.6.17-1) ... 212s Selecting previously unselected package libxt6t64:amd64. 212s Preparing to unpack .../124-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 212s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 212s Selecting previously unselected package libxmu6:amd64. 212s Preparing to unpack .../125-libxmu6_2%3a1.1.3-4_amd64.deb ... 212s Unpacking libxmu6:amd64 (2:1.1.3-4) ... 212s Selecting previously unselected package libxpm4:amd64. 212s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 212s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 212s Selecting previously unselected package libxaw7:amd64. 212s Preparing to unpack .../127-libxaw7_2%3a1.0.16-1build1_amd64.deb ... 212s Unpacking libxaw7:amd64 (2:1.0.16-1build1) ... 212s Selecting previously unselected package libxi6:amd64. 212s Preparing to unpack .../128-libxi6_2%3a1.8.2-2_amd64.deb ... 212s Unpacking libxi6:amd64 (2:1.8.2-2) ... 212s Selecting previously unselected package libzstd-dev:amd64. 212s Preparing to unpack .../129-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 212s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 212s Selecting previously unselected package libzzip-0-13t64:amd64. 212s Preparing to unpack .../130-libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb ... 212s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... 212s Selecting previously unselected package node-bootstrap-sass. 212s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 212s Unpacking node-bootstrap-sass (3.4.3-2) ... 212s Selecting previously unselected package node-html5shiv. 212s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 212s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 212s Selecting previously unselected package node-normalize.css. 212s Preparing to unpack .../133-node-normalize.css_8.0.1-5.1_all.deb ... 212s Unpacking node-normalize.css (8.0.1-5.1) ... 212s Selecting previously unselected package pandoc-data. 212s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ... 212s Unpacking pandoc-data (3.1.11.1-3build1) ... 212s Selecting previously unselected package pandoc. 212s Preparing to unpack .../135-pandoc_3.1.11.1+ds-4_amd64.deb ... 212s Unpacking pandoc (3.1.11.1+ds-4) ... 212s Selecting previously unselected package zip. 212s Preparing to unpack .../136-zip_3.0-15ubuntu3_amd64.deb ... 212s Unpacking zip (3.0-15ubuntu3) ... 212s Selecting previously unselected package unzip. 212s Preparing to unpack .../137-unzip_6.0-29ubuntu1_amd64.deb ... 212s Unpacking unzip (6.0-29ubuntu1) ... 213s Selecting previously unselected package xdg-utils. 213s Preparing to unpack .../138-xdg-utils_1.2.1-2ubuntu2_all.deb ... 213s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 213s Selecting previously unselected package r-base-core. 213s Preparing to unpack .../139-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 213s Unpacking r-base-core (4.5.2-1ubuntu2) ... 213s Selecting previously unselected package liblzma-dev:amd64. 213s Preparing to unpack .../140-liblzma-dev_5.8.2-2_amd64.deb ... 213s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 213s Selecting previously unselected package pkgconf-bin. 213s Preparing to unpack .../141-pkgconf-bin_1.8.1-4build1_amd64.deb ... 213s Unpacking pkgconf-bin (1.8.1-4build1) ... 213s Selecting previously unselected package pkgconf:amd64. 213s Preparing to unpack .../142-pkgconf_1.8.1-4build1_amd64.deb ... 213s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 213s Selecting previously unselected package libtirpc-dev:amd64. 213s Preparing to unpack .../143-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 213s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 213s Selecting previously unselected package r-base-dev. 213s Preparing to unpack .../144-r-base-dev_4.5.2-1ubuntu2_all.deb ... 213s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 213s Selecting previously unselected package pkg-r-autopkgtest. 213s Preparing to unpack .../145-pkg-r-autopkgtest_20250812_all.deb ... 213s Unpacking pkg-r-autopkgtest (20250812) ... 213s Selecting previously unselected package r-bioc-biocgenerics. 213s Preparing to unpack .../146-r-bioc-biocgenerics_0.52.0-2_all.deb ... 213s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 213s Selecting previously unselected package r-bioc-biobase. 213s Preparing to unpack .../147-r-bioc-biobase_2.66.0-2_amd64.deb ... 213s Unpacking r-bioc-biobase (2.66.0-2) ... 213s Selecting previously unselected package r-bioc-s4vectors. 213s Preparing to unpack .../148-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 213s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 213s Selecting previously unselected package r-bioc-iranges. 213s Preparing to unpack .../149-r-bioc-iranges_2.40.1-3_amd64.deb ... 213s Unpacking r-bioc-iranges (2.40.1-3) ... 213s Selecting previously unselected package r-cran-dbi. 213s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ... 213s Unpacking r-cran-dbi (1.2.3-1build1) ... 213s Selecting previously unselected package r-cran-bit. 213s Preparing to unpack .../151-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 213s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-bit64. 213s Preparing to unpack .../152-r-cran-bit64_4.6.0-1-4_amd64.deb ... 213s Unpacking r-cran-bit64 (4.6.0-1-4) ... 213s Selecting previously unselected package r-cran-rlang. 213s Preparing to unpack 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213s Preparing to unpack .../159-r-cran-fastmap_1.2.0-1_amd64.deb ... 213s Unpacking r-cran-fastmap (1.2.0-1) ... 213s Selecting previously unselected package r-cran-cachem. 213s Preparing to unpack .../160-r-cran-cachem_1.1.0-1_amd64.deb ... 213s Unpacking r-cran-cachem (1.1.0-1) ... 213s Selecting previously unselected package r-cran-memoise. 213s Preparing to unpack .../161-r-cran-memoise_2.0.1-1build1_all.deb ... 213s Unpacking r-cran-memoise (2.0.1-1build1) ... 213s Selecting previously unselected package r-cran-pkgconfig. 213s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 213s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 213s Selecting previously unselected package r-cran-plogr. 213s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build2_all.deb ... 213s Unpacking r-cran-plogr (0.2.0-3build2) ... 213s Selecting previously unselected package r-cran-cpp11. 213s Preparing to unpack .../164-r-cran-cpp11_0.5.3-1_all.deb ... 213s Unpacking r-cran-cpp11 (0.5.3-1) ... 213s Selecting previously unselected package r-cran-rsqlite. 213s Preparing to unpack .../165-r-cran-rsqlite_2.3.9-1_amd64.deb ... 213s Unpacking r-cran-rsqlite (2.3.9-1) ... 213s Selecting previously unselected package r-cran-curl. 213s Preparing to unpack .../166-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 213s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-jsonlite. 213s Preparing to unpack .../167-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 213s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 213s Selecting previously unselected package r-cran-mime. 213s Preparing to unpack .../168-r-cran-mime_0.12-2_amd64.deb ... 213s Unpacking r-cran-mime (0.12-2) ... 213s Selecting previously unselected package r-cran-sys. 213s Preparing to unpack .../169-r-cran-sys_3.4.3-1_amd64.deb ... 213s Unpacking r-cran-sys (3.4.3-1) ... 213s Selecting previously unselected package r-cran-askpass. 213s Preparing to unpack .../170-r-cran-askpass_1.2.1-1_amd64.deb ... 213s Unpacking r-cran-askpass (1.2.1-1) ... 213s Selecting previously unselected package r-cran-openssl. 213s Preparing to unpack .../171-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 213s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 213s Selecting previously unselected package r-cran-r6. 213s Preparing to unpack .../172-r-cran-r6_2.6.1-1_all.deb ... 213s Unpacking r-cran-r6 (2.6.1-1) ... 213s Selecting previously unselected package r-cran-httr. 213s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ... 213s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 213s Selecting previously unselected package r-cran-png. 213s Preparing to unpack .../174-r-cran-png_0.1-8-1build2_amd64.deb ... 213s Unpacking r-cran-png (0.1-8-1build2) ... 213s Selecting previously unselected package r-bioc-zlibbioc. 213s Preparing to unpack .../175-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 213s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 213s Selecting previously unselected package r-bioc-xvector. 213s Preparing to unpack .../176-r-bioc-xvector_0.46.0-2_amd64.deb ... 213s Unpacking r-bioc-xvector (0.46.0-2) ... 213s Selecting previously unselected package r-bioc-ucsc.utils. 213s Preparing to unpack .../177-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 213s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 213s Selecting previously unselected package r-bioc-genomeinfodbdata. 213s Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 213s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 213s Selecting previously unselected package r-bioc-genomeinfodb. 213s Preparing to unpack .../179-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 213s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 213s Selecting previously unselected package r-cran-crayon. 213s Preparing to unpack .../180-r-cran-crayon_1.5.3-1_all.deb ... 213s Unpacking r-cran-crayon (1.5.3-1) ... 214s Selecting previously unselected package r-bioc-biostrings. 214s Preparing to unpack .../181-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 214s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 214s Selecting previously unselected package r-bioc-keggrest. 214s Preparing to unpack .../182-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 214s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 214s Selecting previously unselected package r-bioc-annotationdbi. 214s Preparing to unpack .../183-r-bioc-annotationdbi_1.68.0-2_all.deb ... 214s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 214s Selecting previously unselected package r-cran-xml. 214s Preparing to unpack .../184-r-cran-xml_3.99-0.20-1_amd64.deb ... 214s Unpacking r-cran-xml (3.99-0.20-1) ... 214s Selecting previously unselected package r-cran-xtable. 214s Preparing to unpack .../185-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 214s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 214s Selecting previously unselected package r-bioc-annotate. 214s Preparing to unpack .../186-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 214s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 214s Selecting previously unselected package r-cran-base64enc. 214s Preparing to unpack .../187-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 214s Unpacking r-cran-base64enc (0.1-3-3build1) ... 214s Selecting previously unselected package r-cran-digest. 214s Preparing to unpack .../188-r-cran-digest_0.6.39-1_amd64.deb ... 214s Unpacking r-cran-digest (0.6.39-1) ... 214s Selecting previously unselected package r-cran-htmltools. 214s Preparing to unpack .../189-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 214s Unpacking r-cran-htmltools (0.5.8.1-1) ... 214s Selecting previously unselected package r-cran-evaluate. 214s Preparing to unpack .../190-r-cran-evaluate_1.0.5-1_all.deb ... 214s Unpacking r-cran-evaluate (1.0.5-1) ... 214s Selecting previously unselected package r-cran-xfun. 214s Preparing to unpack .../191-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 214s Unpacking r-cran-xfun (0.55+dfsg-1) ... 214s Selecting previously unselected package r-cran-highr. 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(2.0.3-1) ... 215s Selecting previously unselected package r-cran-promises. 215s Preparing to unpack .../209-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 215s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 215s Selecting previously unselected package r-cran-httpuv. 215s Preparing to unpack .../210-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 215s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 215s Selecting previously unselected package r-cran-sourcetools. 215s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 215s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 215s Selecting previously unselected package r-cran-withr. 215s Preparing to unpack .../212-r-cran-withr_3.0.2+dfsg-1_all.deb ... 215s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 215s Selecting previously unselected package r-cran-commonmark. 215s Preparing to unpack .../213-r-cran-commonmark_1.9.5-1_amd64.deb ... 215s Unpacking r-cran-commonmark (1.9.5-1) ... 215s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 215s Preparing to unpack .../214-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 215s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 215s Selecting previously unselected package r-cran-shiny. 215s Preparing to unpack .../215-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 215s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 215s Selecting previously unselected package r-cran-rmarkdown. 215s Preparing to unpack .../216-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 215s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 215s Selecting previously unselected package r-cran-bookdown. 215s Preparing to unpack .../217-r-cran-bookdown_0.42+dfsg-1_all.deb ... 215s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 215s Selecting previously unselected package r-cran-biocmanager. 215s Preparing to unpack .../218-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 215s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 215s Selecting previously unselected package 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This may take some time... done. 223s Running mktexlsr /var/lib/texmf ... done. 223s Building format(s) --all. 237s This may take some time... done. 237s autopkgtest [01:46:29]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 237s autopkgtest [01:46:29]: test pkg-r-autopkgtest: [----------------------- 237s Test: Try to load the R library geneplotter 238s 238s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 238s Copyright (C) 2025 The R Foundation for Statistical Computing 238s Platform: x86_64-pc-linux-gnu 238s 238s R is free software and comes with ABSOLUTELY NO WARRANTY. 238s You are welcome to redistribute it under certain conditions. 238s Type 'license()' or 'licence()' for distribution details. 238s 238s R is a collaborative project with many contributors. 238s Type 'contributors()' for more information and 238s 'citation()' on how to cite R or R packages in publications. 238s 238s Type 'demo()' for some demos, 'help()' for on-line help, or 238s 'help.start()' for an HTML browser interface to help. 238s Type 'q()' to quit R. 238s 238s > library('geneplotter') 238s Loading required package: Biobase 238s Loading required package: BiocGenerics 238s 238s Attaching package: ‘BiocGenerics’ 238s 238s The following objects are masked from ‘package:stats’: 238s 238s IQR, mad, sd, var, xtabs 238s 238s The following objects are masked from ‘package:base’: 238s 238s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 238s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 238s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 238s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 238s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 238s table, tapply, union, unique, unsplit, which.max, which.min 238s 238s Welcome to Bioconductor 238s 238s Vignettes contain introductory material; view with 238s 'browseVignettes()'. To cite Bioconductor, see 238s 'citation("Biobase")', and for packages 'citation("pkgname")'. 238s 238s Loading required package: lattice 238s Loading required package: annotate 238s Loading required package: AnnotationDbi 238s Loading required package: stats4 238s Loading required package: IRanges 238s Loading required package: S4Vectors 238s 238s Attaching package: ‘S4Vectors’ 238s 238s The following object is masked from ‘package:utils’: 238s 238s findMatches 238s 238s The following objects are masked from ‘package:base’: 238s 238s expand.grid, I, unname 238s 240s Loading required package: XML 240s > 240s find: ‘tests’: No such file or directory 240s autopkgtest [01:46:32]: test pkg-r-autopkgtest: -----------------------] 241s pkg-r-autopkgtest PASS 241s autopkgtest [01:46:33]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 241s autopkgtest [01:46:33]: @@@@@@@@@@@@@@@@@@@@ summary 241s pkg-r-autopkgtest PASS