0s autopkgtest [04:12:07]: starting date and time: 2026-02-10 04:12:07+0000
  0s autopkgtest [04:12:07]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:12:07]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eexzjscx/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-drimseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-8.secgroup --name adt-resolute-amd64-r-bioc-drimseq-20260210-041207-juju-7f2275-prod-proposed-migration-environment-2-be07dae1-c887-42ee-ad4d-bf723e1bdc9a --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  4s Creating nova instance adt-resolute-amd64-r-bioc-drimseq-20260210-041207-juju-7f2275-prod-proposed-migration-environment-2-be07dae1-c887-42ee-ad4d-bf723e1bdc9a from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 73s autopkgtest [04:13:20]: testbed dpkg architecture: amd64
 73s autopkgtest [04:13:20]: testbed apt version: 3.1.14
 73s autopkgtest [04:13:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 73s autopkgtest [04:13:20]: testbed release detected to be: None
 74s autopkgtest [04:13:21]: updating testbed package index (apt update)
 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 74s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 76s Fetched 5189 kB in 1s (4293 kB/s)
 76s Reading package lists...
 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 78s Reading package lists...
 78s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 78s Calculating upgrade...
 78s The following package was automatically installed and is no longer required:
 78s   libpython3.13
 78s Use 'sudo apt autoremove' to remove it.
 78s The following NEW packages will be installed:
 78s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 78s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 78s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 78s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 78s The following packages will be upgraded:
 78s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 78s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 78s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 78s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 78s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 78s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 78s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 78s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 78s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 78s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 78s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 78s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 78s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 78s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 78s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 78s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 78s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 237 MB of archives.
 78s After this operation, 339 MB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 80s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 80s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 80s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 80s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 80s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 80s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 80s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 80s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 80s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 80s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 80s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 80s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 80s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 80s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 80s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 80s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 80s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 80s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 80s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 80s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 80s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 80s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 80s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 80s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 80s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 80s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 80s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 80s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 80s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 80s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 80s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 80s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 80s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 80s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 80s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 80s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 80s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 80s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 80s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 80s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 80s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 80s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 80s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 80s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 81s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 81s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 81s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 84s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 85s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 85s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 85s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 85s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 85s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 85s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 85s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 85s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 85s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 85s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 85s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 85s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 86s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 86s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 86s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 86s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 86s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 86s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 86s Fetched 237 MB in 7s (32.7 MB/s)
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 86s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 86s Setting up debianutils (5.23.2build1) ...
 86s (Reading database ... 
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 86s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 86s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 86s Setting up dash (0.5.12-12ubuntu3) ...
 86s (Reading database ... 
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 86s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 86s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 86s Setting up findutils (4.10.0-3build2) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 86s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 86s Setting up sed (4.9-2build3) ...
 86s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 86s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 86s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 86s Setting up tar (1.35+dfsg-3.1build2) ...
 86s (Reading database ... 
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 96s man-db.service is a disabled or a static unit not running, not starting it.
 96s Setting up libjansson4:amd64 (2.14-2build4) ...
 96s Setting up libglib2.0-data (2.87.2-2) ...
 96s Setting up pollinate (4.33-4ubuntu5) ...
107s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
107s Setting up libwrap0:amd64 (7.6.q-36build2) ...
107s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
108s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
108s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
108s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
108s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
108s Setting up patch (2.8-2build1) ...
108s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
108s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
108s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
108s Setting up lsof (4.99.4+dfsg-2build2) ...
108s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
108s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
108s Setting up dracut-install (109-11ubuntu1) ...
108s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
108s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
108s Setting up pnp.ids (0.394-1build1) ...
108s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
108s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
108s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
108s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
108s Setting up mawk (1.3.4.20260129-1) ...
108s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
108s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
108s Setting up linux-image-virtual (6.19.0-3.3) ...
108s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
108s Setting up libbsd0:amd64 (0.12.2-2build2) ...
108s Setting up libdrm-common (2.4.131-1) ...
108s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
108s Setting up dbus-bin (1.16.2-2ubuntu3) ...
108s Setting up libonig5:amd64 (6.9.10-1build1) ...
108s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
108s Setting up ethtool (1:6.15-3build1) ...
108s Setting up python3-referencing (0.36.2-1ubuntu2) ...
108s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
108s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
108s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
108s Setting up tcpdump (4.99.5-2ubuntu3) ...
109s Setting up linux-image-generic (6.19.0-3.3) ...
109s Setting up wget (1.25.0-2ubuntu4) ...
109s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
109s Setting up iptables (1.8.11-2ubuntu3) ...
109s Setting up iproute2 (6.18.0-1ubuntu1) ...
109s Setting up linux-headers-generic (6.19.0-3.3) ...
109s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
109s Setting up hwdata (0.394-1build1) ...
109s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
109s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
109s No schema files found: doing nothing.
109s Setting up dbus (1.16.2-2ubuntu3) ...
109s A reboot is required to replace the running dbus-daemon.
109s Please reboot the system when convenient.
109s Setting up shared-mime-info (2.4-5build3) ...
110s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
110s Setting up pciutils (1:3.14.0-1build2) ...
110s Setting up python3-markdown-it (3.0.0-3build1) ...
110s Setting up libdrm2:amd64 (2.4.131-1) ...
110s Setting up libpython3.14:amd64 (3.14.2-1) ...
110s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
110s Setting up linux-tools-common (6.19.0-3.3) ...
110s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
110s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
110s Setting up apt (3.1.15) ...
110s Setting up linux-headers-virtual (6.19.0-3.3) ...
110s Setting up linux-generic (6.19.0-3.3) ...
110s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
110s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
110s Setting up ubuntu-standard (1.564) ...
110s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
110s Setting up linux-virtual (6.19.0-3.3) ...
110s Setting up linux-perf (6.19.0-3.3) ...
110s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
110s Processing triggers for debianutils (5.23.2build1) ...
110s Processing triggers for install-info (7.2-5) ...
111s Processing triggers for initramfs-tools (0.150ubuntu7) ...
111s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
115s Processing triggers for libc-bin (2.42-2ubuntu4) ...
115s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
115s /etc/kernel/postinst.d/initramfs-tools:
115s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
120s /etc/kernel/postinst.d/zz-update-grub:
120s Sourcing file `/etc/default/grub'
120s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
120s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
120s Generating grub configuration file ...
120s Found linux image: /boot/vmlinuz-6.19.0-3-generic
120s Found initrd image: /boot/initrd.img-6.19.0-3-generic
120s Found linux image: /boot/vmlinuz-6.18.0-9-generic
120s Found initrd image: /boot/initrd.img-6.18.0-9-generic
120s Warning: os-prober will not be executed to detect other bootable partitions.
120s Systems on them will not be added to the GRUB boot configuration.
120s Check GRUB_DISABLE_OS_PROBER documentation entry.
120s Adding boot menu entry for UEFI Firmware Settings ...
120s done
120s autopkgtest [04:14:07]: upgrading testbed (apt dist-upgrade and autopurge)
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s Calculating upgrade...
121s The following package was automatically installed and is no longer required:
121s   libpython3.13
121s Use 'sudo apt autoremove' to remove it.
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s Solving dependencies...
122s The following packages will be REMOVED:
122s   libpython3.13*
122s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
122s After this operation, 7599 kB disk space will be freed.
122s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
122s Removing libpython3.13:amd64 (3.13.11-1) ...
122s Processing triggers for libc-bin (2.42-2ubuntu4) ...
122s autopkgtest [04:14:09]: rebooting testbed after setup commands that affected boot
151s autopkgtest [04:14:38]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
154s autopkgtest [04:14:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-drimseq
155s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-drimseq 1.34.0-2 (dsc) [2235 B]
155s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-drimseq 1.34.0-2 (tar) [497 kB]
155s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-drimseq 1.34.0-2 (diff) [2796 B]
156s gpgv: Signature made Sun Jan 12 19:15:16 2025 UTC
156s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
156s gpgv:                issuer "crusoe@debian.org"
156s gpgv: Can't check signature: No public key
156s dpkg-source: warning: cannot verify inline signature for ./r-bioc-drimseq_1.34.0-2.dsc: no acceptable signature found
156s autopkgtest [04:14:43]: testing package r-bioc-drimseq version 1.34.0-2
156s autopkgtest [04:14:43]: build not needed
161s autopkgtest [04:14:48]: test pkg-r-autopkgtest: preparing testbed
161s Reading package lists...
162s Building dependency tree...
162s Reading state information...
162s Solving dependencies...
162s The following NEW packages will be installed:
162s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
162s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
162s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
162s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
162s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
162s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
162s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
162s   libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2
162s   libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
162s   libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3
162s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
162s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
162s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
162s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
162s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
162s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
162s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
162s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
162s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev
162s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
162s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
162s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0
162s   libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6
162s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
162s   libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
162s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev
162s   libzzip-0-13t64 linux-libc-dev node-bootstrap-sass node-html5shiv
162s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
162s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel
162s   r-bioc-biocstyle r-bioc-biocversion r-bioc-drimseq r-bioc-edger
162s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
162s   r-bioc-iranges r-bioc-limma r-bioc-s4vectors r-bioc-ucsc.utils
162s   r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc r-cran-bh
162s   r-cran-biocmanager r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem
162s   r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11
162s   r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj r-cran-digest
162s   r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome
162s   r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options
162s   r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools
162s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
162s   r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
162s   r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass
162s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgbuild r-cran-pkgkitten
162s   r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx r-cran-promises
162s   r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
162s   r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-s7
162s   r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools
162s   r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat
162s   r-cran-tinytex r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr
162s   r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common
162s   texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip
162s   x11-common xdg-utils zip zlib1g-dev
162s 0 upgraded, 256 newly installed, 0 to remove and 0 not upgraded.
162s Need to get 401 MB of archives.
162s After this operation, 1316 MB of additional disk space will be used.
162s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
162s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
162s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
162s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
162s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
162s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
162s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
162s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
162s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
162s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
162s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
162s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
162s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
162s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
162s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
162s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
163s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
163s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
163s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
163s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
163s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
163s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
163s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
163s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
163s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
164s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
164s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
164s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
164s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
164s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
164s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
164s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
164s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
164s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
164s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
164s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
164s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
164s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
164s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
164s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB]
164s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
165s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
165s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
165s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
165s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
165s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
165s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
165s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
165s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
165s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
165s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB]
165s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB]
165s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
165s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
165s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
165s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
165s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
165s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
165s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
165s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
165s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
165s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
165s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
165s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
165s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
165s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
165s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
165s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
165s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
166s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
166s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
166s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
166s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
166s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
166s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
166s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
166s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
166s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
166s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
166s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
166s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
166s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
166s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
166s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
166s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
166s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
166s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
166s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
166s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
166s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
166s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB]
166s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
166s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
166s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
166s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
166s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB]
166s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
166s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
166s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
166s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
166s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
166s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
166s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
166s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
166s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
166s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
166s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
166s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
166s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
166s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
166s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
166s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB]
166s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB]
166s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
166s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
166s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
166s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB]
166s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
167s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB]
167s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB]
167s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
167s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
167s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
167s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
167s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
167s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
167s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
167s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB]
167s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB]
167s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB]
167s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB]
167s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
167s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB]
167s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
167s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
167s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
167s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
167s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
167s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
167s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
167s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
167s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
168s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
168s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
168s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
168s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
168s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
168s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
168s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
168s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
168s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
168s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
168s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
168s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
168s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
168s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
168s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
168s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
168s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
168s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
168s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
168s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
169s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
169s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
169s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
169s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
169s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
169s Get:168 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
169s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
169s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
169s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
169s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
169s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
169s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
169s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
169s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
169s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
169s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
169s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
169s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
169s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
169s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
169s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
169s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
169s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
169s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
169s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
169s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
169s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
169s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
169s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
169s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
169s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
169s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
169s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
169s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
169s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
169s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
169s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
170s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
170s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
170s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
170s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB]
170s Get:204 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB]
170s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB]
170s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB]
170s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB]
171s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB]
173s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
173s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
173s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
173s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
173s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
173s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
173s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
173s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
173s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
173s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
173s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
173s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
173s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
174s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
174s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
174s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
174s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
174s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB]
174s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
174s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB]
174s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB]
174s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
174s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
174s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
174s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
174s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
174s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
174s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
174s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
174s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
174s Get:239 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
174s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
174s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
174s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
175s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
175s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-drimseq all 1.34.0-2 [788 kB]
175s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
175s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
175s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
175s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
175s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
175s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB]
175s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB]
175s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB]
175s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB]
175s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB]
175s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB]
175s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
175s Preconfiguring packages ...
175s Fetched 401 MB in 13s (30.9 MB/s)
175s Selecting previously unselected package libc-dev-bin.
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175s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
175s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
175s Selecting previously unselected package linux-libc-dev:amd64.
175s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
175s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
175s Selecting previously unselected package libcrypt-dev:amd64.
175s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
175s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
175s Selecting previously unselected package rpcsvc-proto.
175s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
175s Unpacking rpcsvc-proto (1.4.3-1build1) ...
175s Selecting previously unselected package libc6-dev:amd64.
175s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
175s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
176s Selecting previously unselected package libisl23:amd64.
176s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
176s Unpacking libisl23:amd64 (0.27-1build1) ...
176s Selecting previously unselected package libmpc3:amd64.
176s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
176s Unpacking libmpc3:amd64 (1.3.1-2) ...
176s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
176s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package cpp-15.
176s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package cpp-x86-64-linux-gnu.
176s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package cpp.
176s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking cpp (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package libcc1-0:amd64.
176s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libgomp1:amd64.
176s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libitm1:amd64.
176s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libasan8:amd64.
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176s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package liblsan0:amd64.
176s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libtsan2:amd64.
176s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libubsan1:amd64.
176s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libhwasan0:amd64.
176s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libquadmath0:amd64.
176s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
176s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
176s Selecting previously unselected package libgcc-15-dev:amd64.
176s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
176s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gcc-15.
176s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package gcc-x86-64-linux-gnu.
176s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package gcc.
176s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
176s Unpacking gcc (4:15.2.0-4ubuntu1) ...
176s Selecting previously unselected package libstdc++-15-dev:amd64.
176s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
176s Selecting previously unselected package g++-15-x86-64-linux-gnu.
176s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
176s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
177s Selecting previously unselected package g++-15.
177s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
177s Unpacking g++-15 (15.2.0-12ubuntu1) ...
177s Selecting previously unselected package g++-x86-64-linux-gnu.
177s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
177s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
177s Selecting previously unselected package g++.
177s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
177s Unpacking g++ (4:15.2.0-4ubuntu1) ...
177s Selecting previously unselected package build-essential.
177s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
177s Unpacking build-essential (12.12ubuntu2) ...
177s Selecting previously unselected package dctrl-tools.
177s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
177s Unpacking dctrl-tools (2.24-3build4) ...
177s Selecting previously unselected package fonts-dejavu-mono.
177s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
177s Unpacking fonts-dejavu-mono (2.37-8build1) ...
177s Selecting previously unselected package fonts-dejavu-core.
177s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
177s Unpacking fonts-dejavu-core (2.37-8build1) ...
177s Selecting previously unselected package fontconfig-config.
177s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
177s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
177s Selecting previously unselected package libfontconfig1:amd64.
177s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
177s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
177s Selecting previously unselected package fontconfig.
177s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
177s Unpacking fontconfig (2.17.1-3ubuntu1) ...
177s Selecting previously unselected package fonts-font-awesome.
177s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
177s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
177s Selecting previously unselected package fonts-glyphicons-halflings.
177s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
177s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
177s Selecting previously unselected package fonts-lmodern.
177s Preparing to unpack .../039-fonts-lmodern_2.005-1build1_all.deb ...
177s Unpacking fonts-lmodern (2.005-1build1) ...
177s Selecting previously unselected package fonts-mathjax.
177s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
177s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
177s Selecting previously unselected package libgfortran5:amd64.
177s Preparing to unpack .../041-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
177s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
177s Selecting previously unselected package libgfortran-15-dev:amd64.
177s Preparing to unpack .../042-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
177s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
177s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
177s Preparing to unpack .../043-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
177s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
177s Selecting previously unselected package gfortran-15.
177s Preparing to unpack .../044-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
177s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
177s Selecting previously unselected package gfortran-x86-64-linux-gnu.
177s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
177s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
177s Selecting previously unselected package gfortran.
177s Preparing to unpack .../046-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
177s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
177s Selecting previously unselected package icu-devtools.
177s Preparing to unpack .../047-icu-devtools_78.2-1ubuntu1_amd64.deb ...
177s Unpacking icu-devtools (78.2-1ubuntu1) ...
177s Selecting previously unselected package javascript-common.
177s Preparing to unpack .../048-javascript-common_12+nmu1build1_all.deb ...
177s Unpacking javascript-common (12+nmu1build1) ...
177s Selecting previously unselected package libio-string-perl.
177s Preparing to unpack .../049-libio-string-perl_1.08-4_all.deb ...
177s Unpacking libio-string-perl (1.08-4) ...
177s Selecting previously unselected package liblatex-tounicode-perl.
177s Preparing to unpack .../050-liblatex-tounicode-perl_1.93-1_all.deb ...
177s Unpacking liblatex-tounicode-perl (1.93-1) ...
177s Selecting previously unselected package libbibtex-parser-perl.
177s Preparing to unpack .../051-libbibtex-parser-perl_1.93+dfsg-1_all.deb ...
177s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ...
177s Selecting previously unselected package libblas3:amd64.
177s Preparing to unpack .../052-libblas3_3.12.1-7ubuntu1_amd64.deb ...
177s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
177s Selecting previously unselected package libblas-dev:amd64.
177s Preparing to unpack .../053-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
177s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
177s Selecting previously unselected package libboost1.90-dev:amd64.
177s Preparing to unpack .../054-libboost1.90-dev_1.90.0-2ubuntu1_amd64.deb ...
177s Unpacking libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ...
178s Selecting previously unselected package libboost-dev:amd64.
178s Preparing to unpack .../055-libboost-dev_1.90.0.0ubuntu3_amd64.deb ...
178s Unpacking libboost-dev:amd64 (1.90.0.0ubuntu3) ...
178s Selecting previously unselected package libbz2-dev:amd64.
178s Preparing to unpack .../056-libbz2-dev_1.0.8-6build2_amd64.deb ...
178s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
178s Selecting previously unselected package libpixman-1-0:amd64.
178s Preparing to unpack .../057-libpixman-1-0_0.46.4-1_amd64.deb ...
178s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
178s Selecting previously unselected package libxcb-render0:amd64.
178s Preparing to unpack .../058-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
178s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
178s Selecting previously unselected package libxcb-shm0:amd64.
178s Preparing to unpack .../059-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
178s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
178s Selecting previously unselected package libxrender1:amd64.
178s Preparing to unpack .../060-libxrender1_1%3a0.9.12-1_amd64.deb ...
178s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
178s Selecting previously unselected package libcairo2:amd64.
178s Preparing to unpack .../061-libcairo2_1.18.4-3_amd64.deb ...
178s Unpacking libcairo2:amd64 (1.18.4-3) ...
178s Selecting previously unselected package libdatrie1:amd64.
178s Preparing to unpack .../062-libdatrie1_0.2.14-1_amd64.deb ...
178s Unpacking libdatrie1:amd64 (0.2.14-1) ...
178s Selecting previously unselected package libdeflate0:amd64.
178s Preparing to unpack .../063-libdeflate0_1.23-2build1_amd64.deb ...
178s Unpacking libdeflate0:amd64 (1.23-2build1) ...
178s Selecting previously unselected package libdeflate-dev:amd64.
178s Preparing to unpack .../064-libdeflate-dev_1.23-2build1_amd64.deb ...
178s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
178s Selecting previously unselected package libgraphite2-3:amd64.
178s Preparing to unpack .../065-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
178s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
178s Selecting previously unselected package libharfbuzz0b:amd64.
178s Preparing to unpack .../066-libharfbuzz0b_12.3.2-1_amd64.deb ...
178s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
178s Selecting previously unselected package x11-common.
178s Preparing to unpack .../067-x11-common_1%3a7.7+24ubuntu1_all.deb ...
178s Unpacking x11-common (1:7.7+24ubuntu1) ...
178s Selecting previously unselected package libice6:amd64.
178s Preparing to unpack .../068-libice6_2%3a1.1.1-1build1_amd64.deb ...
178s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
178s Selecting previously unselected package libicu-dev:amd64.
178s Preparing to unpack .../069-libicu-dev_78.2-1ubuntu1_amd64.deb ...
178s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
178s Selecting previously unselected package libjpeg-turbo8:amd64.
178s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
178s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
178s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
178s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ...
178s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
178s Selecting previously unselected package libjpeg8:amd64.
178s Preparing to unpack .../072-libjpeg8_8c-2ubuntu12_amd64.deb ...
178s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ...
178s Selecting previously unselected package libjpeg8-dev:amd64.
179s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu12_amd64.deb ...
179s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu12) ...
179s Selecting previously unselected package libjpeg-dev:amd64.
179s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu12_amd64.deb ...
179s Unpacking libjpeg-dev:amd64 (8c-2ubuntu12) ...
179s Selecting previously unselected package libjs-bootstrap.
179s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-6_all.deb ...
179s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ...
179s Selecting previously unselected package libjs-popper.js.
179s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6build1_all.deb ...
179s Unpacking libjs-popper.js (1.16.1+ds-6build1) ...
179s Selecting previously unselected package libjs-bootstrap4.
179s Preparing to unpack .../077-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ...
179s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ...
179s Selecting previously unselected package libjs-d3.
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179s Unpacking libjs-d3 (3.5.17-4build1) ...
179s Selecting previously unselected package libjs-es5-shim.
179s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ...
179s Unpacking libjs-es5-shim (4.6.7-2) ...
179s Selecting previously unselected package libjs-highlight.js.
179s Preparing to unpack .../080-libjs-highlight.js_10.7.3+dfsg-2_all.deb ...
179s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ...
179s Selecting previously unselected package libjs-jquery.
179s Preparing to unpack .../081-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ...
179s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ...
179s Selecting previously unselected package libjs-jquery-datatables.
179s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ...
179s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
179s Selecting previously unselected package libjs-sifter.js.
179s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
179s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
179s Selecting previously unselected package libjs-microplugin.js.
179s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ...
179s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ...
179s Selecting previously unselected package libjs-jquery-selectize.js.
179s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
179s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
179s Selecting previously unselected package libjs-jquery-ui.
179s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ...
179s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ...
179s Selecting previously unselected package libjs-json.
179s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1build1_all.deb ...
179s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ...
179s Selecting previously unselected package libjs-lunr.
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182s Selecting previously unselected package r-cran-littler.
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182s Selecting previously unselected package r-cran-shiny.
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184s Selecting previously unselected package r-cran-curl.
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186s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
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186s Setting up fontconfig (2.17.1-3ubuntu1) ...
188s Regenerating fonts cache... done.
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188s Setting up libxft2:amd64 (2.3.6-1build2) ...
188s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
188s Setting up libpcre2-dev:amd64 (10.46-1) ...
188s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
188s Setting up libtk8.6:amd64 (8.6.17-1) ...
188s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
188s Setting up libreadline-dev:amd64 (8.3-3) ...
188s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
188s Setting up libcairo2:amd64 (1.18.4-3) ...
188s Setting up gcc-15 (15.2.0-12ubuntu1) ...
188s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
188s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
188s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
188s Setting up cpp (4:15.2.0-4ubuntu1) ...
188s Setting up libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ...
188s Setting up libboost-dev:amd64 (1.90.0.0ubuntu3) ...
188s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
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188s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
188s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
188s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
188s Setting up libxmu6:amd64 (2:1.1.3-4) ...
188s Setting up libpng-dev:amd64 (1.6.54-1) ...
188s Setting up libjpeg-dev:amd64 (8c-2ubuntu12) ...
188s Setting up libxaw7:amd64 (2:1.0.16-1build1) ...
188s Setting up gcc (4:15.2.0-4ubuntu1) ...
188s Setting up r-base-core (4.5.2-1ubuntu2) ...
188s Creating config file /etc/R/Renviron with new version
188s Setting up r-cran-crayon (1.5.3-1) ...
188s Setting up r-cran-labeling (0.4.3-1) ...
188s Setting up r-cran-sourcetools (0.1.7-1-1) ...
188s Setting up r-cran-futile.options (1.0.1-3build2) ...
188s Setting up r-cran-lattice (0.22-7-1) ...
188s Setting up r-cran-ps (1.9.0-1) ...
188s Setting up r-cran-farver (2.1.2-1) ...
188s Setting up r-cran-formatr (1.14-2) ...
188s Setting up r-cran-viridislite (0.4.3-1) ...
188s Setting up r-cran-locfit (1.5-9.12-1) ...
188s Setting up texlive-binaries (2025.20250727.75242+ds-5build1) ...
188s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
188s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
188s Setting up r-cran-statmod (1.5.0-1) ...
188s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
188s Setting up r-cran-commonmark (1.9.5-1) ...
188s Setting up r-cran-r6 (2.6.1-1) ...
188s Setting up r-cran-pkgkitten (0.2.4-1) ...
188s Setting up texlive-base (2025.20260124-1) ...
188s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
189s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
189s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
189s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
189s Setting up g++-15 (15.2.0-12ubuntu1) ...
189s Setting up r-cran-magrittr (2.0.3-1) ...
189s Setting up r-cran-rappdirs (0.3.3-1build1) ...
189s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
189s Setting up r-cran-littler (0.3.22-1) ...
189s Setting up r-cran-bh (1.84.0-1) ...
189s Setting up r-cran-fs (1.6.5+dfsg-1) ...
189s Setting up r-cran-rcpp (1.1.0-1) ...
189s Setting up r-cran-curl (7.0.0+dfsg-1) ...
189s Setting up r-cran-codetools (0.2-20-1build1) ...
189s Setting up r-cran-brio (1.1.5-1) ...
189s Setting up r-cran-diffobj (0.3.5-1build1) ...
189s Setting up r-bioc-biocgenerics (0.52.0-2) ...
189s Setting up r-cran-rlang (1.1.5-3) ...
189s Setting up r-cran-xfun (0.55+dfsg-1) ...
189s Setting up r-cran-sys (3.4.3-1) ...
189s Setting up r-cran-withr (3.0.2+dfsg-1) ...
189s Setting up r-cran-processx (3.8.6-1) ...
189s Setting up r-cran-mime (0.12-2) ...
189s Setting up r-cran-praise (1.0.0-4build2) ...
189s Setting up r-cran-base64enc (0.1-3-3build1) ...
189s Setting up r-cran-digest (0.6.39-1) ...
189s Setting up r-cran-yaml (2.3.10-1) ...
189s Setting up r-cran-lambda.r (1.2.4-2build2) ...
189s Setting up r-cran-evaluate (1.0.5-1) ...
189s Setting up r-cran-highr (0.11+dfsg-1) ...
189s Setting up r-cran-mass (7.3-65-1) ...
189s Setting up r-cran-snow (1:0.4.4-2build1) ...
189s Setting up r-cran-glue (1.8.0-1) ...
189s Setting up r-cran-xtable (1:1.8-4-2build1) ...
189s Setting up r-cran-cli (3.6.4-1) ...
189s Setting up gfortran (4:15.2.0-4ubuntu1) ...
189s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
189s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
189s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
189s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
189s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
189s Setting up r-bioc-biocversion (3.20.0-2) ...
189s Setting up r-cran-rprojroot (2.1.1-1) ...
189s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
189s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
189s Setting up r-cran-askpass (1.2.1-1) ...
189s Setting up r-cran-fastmap (1.2.0-1) ...
189s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
189s Setting up r-cran-stringi (1.8.4-1build2) ...
189s Setting up texlive-latex-base (2025.20260124-1) ...
189s Setting up r-cran-s7 (0.2.0-1) ...
189s Setting up r-cran-cpp11 (0.5.3-1) ...
189s Setting up r-cran-plyr (1.8.9-1) ...
189s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
189s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
189s Setting up r-cran-isoband (0.2.7-1) ...
189s Setting up r-cran-futile.logger (1.4.3-4build2) ...
189s Setting up r-cran-waldo (0.6.2-1) ...
189s Setting up r-cran-scales (1.4.0-1) ...
189s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
189s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
189s Setting up r-cran-later (1.4.1+dfsg-1) ...
189s Setting up r-cran-htmltools (0.5.8.1-1) ...
189s Setting up r-cran-tinytex (0.58-1) ...
189s Setting up r-cran-knitr (1.51+dfsg-1) ...
189s Setting up g++ (4:15.2.0-4ubuntu1) ...
189s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
189s Setting up r-cran-cachem (1.1.0-1) ...
189s Setting up r-cran-sass (0.4.9+dfsg-1) ...
189s Setting up build-essential (12.12ubuntu2) ...
189s Setting up r-bioc-iranges (2.40.1-3) ...
189s Setting up r-cran-vctrs (0.6.5-1) ...
189s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
189s Setting up r-base-dev (4.5.2-1ubuntu2) ...
189s Setting up r-cran-stringr (1.5.1-1) ...
189s Setting up r-bioc-biocparallel (1.40.0-2) ...
189s Setting up r-cran-callr (3.7.6-1) ...
189s Setting up r-bioc-edger (4.4.2+dfsg-1) ...
189s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
189s Setting up r-cran-desc (1.4.3-1) ...
189s Setting up r-cran-fontawesome (0.5.3-1) ...
189s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
189s Setting up texlive-bibtex-extra (2025.20260124-1) ...
189s Setting up r-cran-reshape2 (1.4.4-2build2) ...
189s Setting up r-cran-httr (1.4.7+dfsg-1) ...
189s Setting up r-cran-memoise (2.0.1-1build1) ...
189s Setting up r-cran-promises (1.3.2+dfsg-1) ...
189s Setting up pkg-r-autopkgtest (20250812) ...
189s Setting up r-bioc-xvector (0.46.0-2) ...
189s Setting up r-cran-pkgbuild (1.4.8-1) ...
189s Setting up r-cran-pkgload (1.4.1-1) ...
189s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
189s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
189s Setting up r-cran-testthat (3.2.3-1) ...
189s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
189s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
189s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
189s Setting up r-bioc-drimseq (1.34.0-2) ...
189s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
189s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
189s Setting up r-cran-bookdown (0.42+dfsg-1) ...
189s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
189s Processing triggers for libc-bin (2.42-2ubuntu4) ...
189s Processing triggers for man-db (2.13.1-1build1) ...
190s Processing triggers for install-info (7.2-5) ...
190s Processing triggers for tex-common (6.20) ...
190s Running updmap-sys. This may take some time... done.
191s Running mktexlsr /var/lib/texmf ... done.
191s Building format(s) --all.
205s 	This may take some time... done.
206s autopkgtest [04:15:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
206s autopkgtest [04:15:33]: test pkg-r-autopkgtest: [-----------------------
206s Test: Try to load the R library DRIMSeq
206s 
206s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
206s Copyright (C) 2025 The R Foundation for Statistical Computing
206s Platform: x86_64-pc-linux-gnu
206s 
206s R is free software and comes with ABSOLUTELY NO WARRANTY.
206s You are welcome to redistribute it under certain conditions.
206s Type 'license()' or 'licence()' for distribution details.
206s 
206s R is a collaborative project with many contributors.
206s Type 'contributors()' for more information and
206s 'citation()' on how to cite R or R packages in publications.
206s 
206s Type 'demo()' for some demos, 'help()' for on-line help, or
206s 'help.start()' for an HTML browser interface to help.
206s Type 'q()' to quit R.
206s 
206s > library('DRIMSeq')
208s 
208s Attaching package: ‘DRIMSeq’
208s 
208s The following object is masked from ‘package:base’:
208s 
208s     proportions
208s 
208s > 
208s Test: Run tests for DRIMSeq
208s Start: testthat.R
208s 
208s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
208s Copyright (C) 2025 The R Foundation for Statistical Computing
208s Platform: x86_64-pc-linux-gnu
208s 
208s R is free software and comes with ABSOLUTELY NO WARRANTY.
208s You are welcome to redistribute it under certain conditions.
208s Type 'license()' or 'licence()' for distribution details.
208s 
208s R is a collaborative project with many contributors.
208s Type 'contributors()' for more information and
208s 'citation()' on how to cite R or R packages in publications.
208s 
208s Type 'demo()' for some demos, 'help()' for on-line help, or
208s 'help.start()' for an HTML browser interface to help.
208s Type 'q()' to quit R.
208s 
208s > library(testthat)
208s > library(DRIMSeq)
210s 
210s Attaching package: ‘DRIMSeq’
210s 
210s The following object is masked from ‘package:base’:
210s 
210s     proportions
210s 
210s > 
210s > test_check("DRIMSeq")
212s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
212s > 
212s autopkgtest [04:15:39]: test pkg-r-autopkgtest: -----------------------]
213s autopkgtest [04:15:40]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
213s pkg-r-autopkgtest    PASS
213s autopkgtest [04:15:40]: @@@@@@@@@@@@@@@@@@@@ summary
213s pkg-r-autopkgtest    PASS