0s autopkgtest [04:06:12]: starting date and time: 2026-02-10 04:06:12+0000 0s autopkgtest [04:06:12]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:06:12]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7ymeqb_k/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-decontam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-16.secgroup --name adt-resolute-amd64-r-bioc-decontam-20260210-040611-juju-7f2275-prod-proposed-migration-environment-2-83de6c17-610d-45cd-a503-985f6c081d10 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-r-bioc-decontam-20260210-040611-juju-7f2275-prod-proposed-migration-environment-2-83de6c17-610d-45cd-a503-985f6c081d10 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 73s autopkgtest [04:07:25]: testbed dpkg architecture: amd64 73s autopkgtest [04:07:25]: testbed apt version: 3.1.14 74s autopkgtest [04:07:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s autopkgtest [04:07:26]: testbed release detected to be: None 74s autopkgtest [04:07:26]: updating testbed package index (apt update) 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB] 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B] 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB] 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB] 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB] 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB] 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B] 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 76s Fetched 5189 kB in 1s (5973 kB/s) 77s Reading package lists... 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 78s The following package was automatically installed and is no longer required: 78s libpython3.13 78s Use 'sudo apt autoremove' to remove it. 78s The following NEW packages will be installed: 78s gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib 78s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 78s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 78s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 78s The following packages will be upgraded: 78s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 78s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 78s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 78s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 78s iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0 78s libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 78s libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 78s libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 78s libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0 78s libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 78s libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0 78s libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic 78s linux-headers-virtual linux-image-generic linux-image-virtual linux-perf 78s linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids 78s pollinate python3-linkify-it python3-markdown-it python3-referencing sed 78s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 78s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 237 MB of archives. 78s After this operation, 339 MB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 78s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB] 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB] 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB] 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 79s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 79s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 79s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 79s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 79s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 79s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 79s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 79s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 79s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 79s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 79s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 79s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 79s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 79s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 79s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 79s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 79s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 79s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 79s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 79s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 79s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 79s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 79s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 79s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 79s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 79s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 79s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 79s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 79s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 79s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 79s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 79s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 79s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 79s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 79s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 79s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 79s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 79s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 79s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 79s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 79s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 79s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 79s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 79s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 79s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 79s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 82s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 82s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 82s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 82s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 82s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 82s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 82s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 82s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 82s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 82s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 82s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 82s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 82s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 82s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 82s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 82s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 82s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 82s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 82s dpkg-preconfigure: unable to re-open stdin: No such file or directory 82s Fetched 237 MB in 4s (60.8 MB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 83s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 83s Setting up debianutils (5.23.2build1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 83s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 83s Setting up dash (0.5.12-12ubuntu3) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 83s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 83s Setting up findutils (4.10.0-3build2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 83s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 83s Setting up sed (4.9-2build3) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 83s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 83s Setting up tar (1.35+dfsg-3.1build2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 83s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 83s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 83s Selecting previously unselected package gcc-16-base:amd64. 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_amd64.deb ... 83s Unpacking gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 83s Setting up gcc-16-base:amd64 (16-20260208-1ubuntu1) ... 83s (Reading database ... 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(7.7.0+6.19.0-3.3) ... 91s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ... 91s Setting up liblsof0 (4.99.4+dfsg-2build2) ... 91s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 91s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 91s Setting up libsensors-config (1:3.6.2-2build1) ... 91s Setting up less (668-1build1) ... 92s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ... 92s Setting up libidn2-0:amd64 (2.3.8-4build1) ... 92s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 92s amd64-microcode: microcode will be updated at next boot 92s Setting up man-db (2.13.1-1build1) ... 92s Updating database of manual pages ... 93s man-db.service is a disabled or a static unit not running, not starting it. 93s Setting up libjansson4:amd64 (2.14-2build4) ... 93s Setting up libglib2.0-data (2.87.2-2) ... 93s Setting up pollinate (4.33-4ubuntu5) ... 104s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 104s Setting up libwrap0:amd64 (7.6.q-36build2) ... 104s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 105s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 105s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 105s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 105s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ... 105s Setting up patch (2.8-2build1) ... 105s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 105s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 105s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 105s Setting up lsof (4.99.4+dfsg-2build2) ... 105s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 105s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 105s Setting up dracut-install (109-11ubuntu1) ... 105s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 105s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 105s Setting up pnp.ids (0.394-1build1) ... 105s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 105s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 105s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 105s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 105s Setting up mawk (1.3.4.20260129-1) ... 105s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 105s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 105s Setting up linux-image-virtual (6.19.0-3.3) ... 105s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 105s Setting up libbsd0:amd64 (0.12.2-2build2) ... 105s Setting up libdrm-common (2.4.131-1) ... 105s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ... 105s Setting up dbus-bin (1.16.2-2ubuntu3) ... 105s Setting up libonig5:amd64 (6.9.10-1build1) ... 105s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 105s Setting up ethtool (1:6.15-3build1) ... 106s Setting up python3-referencing (0.36.2-1ubuntu2) ... 106s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 106s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 106s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 106s Setting up tcpdump (4.99.5-2ubuntu3) ... 106s Setting up linux-image-generic (6.19.0-3.3) ... 106s Setting up wget (1.25.0-2ubuntu4) ... 106s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 106s Setting up iptables (1.8.11-2ubuntu3) ... 106s Setting up iproute2 (6.18.0-1ubuntu1) ... 106s Setting up linux-headers-generic (6.19.0-3.3) ... 106s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 106s Setting up hwdata (0.394-1build1) ... 106s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 106s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ... 106s No schema files found: doing nothing. 106s Setting up dbus (1.16.2-2ubuntu3) ... 106s A reboot is required to replace the running dbus-daemon. 106s Please reboot the system when convenient. 106s Setting up shared-mime-info (2.4-5build3) ... 107s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 107s Setting up pciutils (1:3.14.0-1build2) ... 107s Setting up python3-markdown-it (3.0.0-3build1) ... 107s Setting up libdrm2:amd64 (2.4.131-1) ... 107s Setting up libpython3.14:amd64 (3.14.2-1) ... 107s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 107s Setting up linux-tools-common (6.19.0-3.3) ... 107s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 107s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 107s Setting up apt (3.1.15) ... 107s Setting up linux-headers-virtual (6.19.0-3.3) ... 107s Setting up linux-generic (6.19.0-3.3) ... 107s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 108s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 108s Setting up ubuntu-standard (1.564) ... 108s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 108s Setting up linux-virtual (6.19.0-3.3) ... 108s Setting up linux-perf (6.19.0-3.3) ... 108s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 108s Processing triggers for debianutils (5.23.2build1) ... 108s Processing triggers for install-info (7.2-5) ... 108s Processing triggers for initramfs-tools (0.150ubuntu7) ... 108s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 112s Processing triggers for libc-bin (2.42-2ubuntu4) ... 112s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 112s /etc/kernel/postinst.d/initramfs-tools: 112s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 116s /etc/kernel/postinst.d/zz-update-grub: 116s Sourcing file `/etc/default/grub' 116s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 116s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 116s Generating grub configuration file ... 116s Found linux image: /boot/vmlinuz-6.19.0-3-generic 116s Found initrd image: /boot/initrd.img-6.19.0-3-generic 116s Found linux image: /boot/vmlinuz-6.18.0-9-generic 116s Found initrd image: /boot/initrd.img-6.18.0-9-generic 116s Warning: os-prober will not be executed to detect other bootable partitions. 116s Systems on them will not be added to the GRUB boot configuration. 116s Check GRUB_DISABLE_OS_PROBER documentation entry. 116s Adding boot menu entry for UEFI Firmware Settings ... 116s done 117s autopkgtest [04:08:09]: upgrading testbed (apt dist-upgrade and autopurge) 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 118s The following package was automatically installed and is no longer required: 118s libpython3.13 118s Use 'sudo apt autoremove' to remove it. 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Solving dependencies... 118s The following packages will be REMOVED: 118s libpython3.13* 118s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 118s After this operation, 7599 kB disk space will be freed. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125273 files and directories currently installed.) 119s Removing libpython3.13:amd64 (3.13.11-1) ... 119s Processing triggers for libc-bin (2.42-2ubuntu4) ... 119s autopkgtest [04:08:11]: rebooting testbed after setup commands that affected boot 147s autopkgtest [04:08:39]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 149s autopkgtest [04:08:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-decontam 151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (dsc) [2139 B] 151s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (tar) [161 kB] 151s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (diff) [5176 B] 151s gpgv: Signature made Sat Jan 11 16:30:45 2025 UTC 151s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 151s gpgv: issuer "crusoe@debian.org" 151s gpgv: Can't check signature: No public key 151s dpkg-source: warning: cannot verify inline signature for ./r-bioc-decontam_1.26.0+dfsg-2.dsc: no acceptable signature found 151s autopkgtest [04:08:43]: testing package r-bioc-decontam version 1.26.0+dfsg-2 151s autopkgtest [04:08:43]: build not needed 159s autopkgtest [04:08:51]: test pkg-r-autopkgtest: preparing testbed 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Solving dependencies... 160s The following NEW packages will be installed: 160s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 160s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 160s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 160s g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 160s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 160s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 160s javascript-common libamd3 libasan8 libbibtex-parser-perl libblas-dev 160s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcolamd3 160s libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 160s libgcc-15-dev libgfortran-15-dev libgfortran5 libglpk40 libgomp1 160s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 160s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 160s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 160s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 160s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 160s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 160s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 160s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 160s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 160s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 160s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 160s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 160s libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsuitesparseconfig7 160s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 160s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 160s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 160s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 linux-libc-dev 160s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 160s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 160s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-biomformat 160s r-bioc-biostrings r-bioc-decontam r-bioc-genomeinfodb 160s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-multtest r-bioc-phyloseq 160s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 160s r-cran-ade4 r-cran-ape r-cran-askpass r-cran-base64enc r-cran-biocmanager 160s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-cluster 160s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 160s r-cran-data.table r-cran-digest r-cran-evaluate r-cran-farver r-cran-fastmap 160s r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-ggplot2 r-cran-glue 160s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 160s r-cran-igraph r-cran-isoband r-cran-iterators r-cran-jquerylib 160s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 160s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 160s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl 160s r-cran-permute r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 160s r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 160s r-cran-rcpparmadillo r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-s7 160s r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-sp 160s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tinytex 160s r-cran-vctrs r-cran-vegan r-cran-viridislite r-cran-withr r-cran-xfun 160s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 160s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 160s xdg-utils zip zlib1g-dev 160s 0 upgraded, 257 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 436 MB of archives. 160s After this operation, 1225 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 160s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 160s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 160s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 160s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 160s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 160s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 160s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 161s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 161s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 161s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 161s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB] 161s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB] 161s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB] 161s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB] 161s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB] 161s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB] 161s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB] 161s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB] 161s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB] 161s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 161s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 162s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 162s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 162s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 162s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 162s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 162s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 162s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 162s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 162s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 162s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 162s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 162s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 162s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 162s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 162s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 162s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 162s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 162s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB] 162s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 162s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB] 162s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 162s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 163s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 163s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 163s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 163s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 163s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 163s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB] 163s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB] 163s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 163s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 163s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 163s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 163s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 163s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 163s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 163s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 163s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 163s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 163s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 163s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB] 163s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 163s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 163s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 163s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 163s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB] 163s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 163s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 163s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 163s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 163s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 163s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 163s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 163s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 163s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 163s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 163s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 163s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 163s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 163s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 163s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 163s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 163s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 163s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 163s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 163s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 163s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 163s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 163s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 163s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 163s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 163s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB] 163s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 163s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 163s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 163s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 163s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB] 163s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 163s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 163s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 163s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 163s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 163s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 163s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 163s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 163s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 163s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 163s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 164s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 164s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 164s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 164s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 164s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB] 164s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB] 164s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 164s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 164s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 164s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB] 164s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 164s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB] 164s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB] 164s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 164s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 164s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 164s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 164s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 164s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 164s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 164s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB] 164s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 164s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB] 164s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 164s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 164s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB] 164s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 164s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 164s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 164s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 164s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 164s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 164s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 164s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 164s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 165s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 165s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 165s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 165s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 165s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 165s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 165s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 165s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 165s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 165s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 165s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 165s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 165s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 165s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 165s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 165s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 165s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 165s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 165s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 165s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 165s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 165s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 165s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 165s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 165s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 165s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 165s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 165s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 165s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 165s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 165s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 165s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 165s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 165s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 165s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 165s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 165s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 165s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 165s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 165s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 165s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 165s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 165s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 165s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 165s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 165s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 165s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 165s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 166s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 166s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 166s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 166s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 166s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB] 166s Get:199 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB] 166s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB] 166s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB] 166s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB] 166s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 168s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 168s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 168s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 169s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 169s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 169s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomformat all 1.34.0+dfsg-2 [229 kB] 169s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 169s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 169s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 169s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 169s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 169s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 169s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 169s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 169s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 169s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 169s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 170s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 170s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 171s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 171s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 171s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB] 171s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 171s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 171s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 171s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 171s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 171s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 171s Get:232 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 171s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 171s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 171s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB] 171s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-decontam all 1.26.0+dfsg-2 [212 kB] 171s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 172s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 172s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 172s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pixmap all 0.4-14-1 [217 kB] 172s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 172s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpparmadillo amd64 15.2.3-1-1 [919 kB] 172s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ade4 amd64 1.7-23-1 [5414 kB] 172s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 172s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ape amd64 5.8-1-1 [2918 kB] 173s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB] 173s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 173s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 173s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-iterators all 1.0.14-1build1 [336 kB] 173s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreach all 1.5.2-1build1 [124 kB] 173s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 173s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 173s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-igraph amd64 2.1.4-1build1 [5218 kB] 173s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-permute all 0.9-8-1 [237 kB] 173s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 173s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vegan amd64 2.6-10+dfsg-3 [3137 kB] 173s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-phyloseq all 1.50.0+dfsg-2 [2205 kB] 174s Preconfiguring packages ... 174s Fetched 436 MB in 14s (31.5 MB/s) 174s Selecting previously unselected package libc-dev-bin. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125269 files and directories currently installed.) 174s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 174s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 174s Selecting previously unselected package linux-libc-dev:amd64. 174s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ... 174s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 174s Selecting previously unselected package libcrypt-dev:amd64. 174s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 174s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 174s Selecting previously unselected package rpcsvc-proto. 174s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 174s Unpacking rpcsvc-proto (1.4.3-1build1) ... 174s Selecting previously unselected package libc6-dev:amd64. 174s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ... 174s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 174s Selecting previously unselected package libisl23:amd64. 174s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ... 174s Unpacking libisl23:amd64 (0.27-1build1) ... 174s Selecting previously unselected package libmpc3:amd64. 174s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ... 174s Unpacking libmpc3:amd64 (1.3.1-2) ... 174s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 174s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package cpp-15. 174s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 174s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 174s Selecting previously unselected package cpp-x86-64-linux-gnu. 174s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 174s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 174s Selecting previously unselected package cpp. 174s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 174s Unpacking cpp (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package libcc1-0:amd64. 175s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libgomp1:amd64. 175s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libitm1:amd64. 175s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libasan8:amd64. 175s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package liblsan0:amd64. 175s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libtsan2:amd64. 175s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libubsan1:amd64. 175s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libhwasan0:amd64. 175s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libquadmath0:amd64. 175s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ... 175s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ... 175s Selecting previously unselected package libgcc-15-dev:amd64. 175s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 175s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package gcc-15. 175s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package gcc-x86-64-linux-gnu. 175s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 175s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package gcc. 175s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 175s Unpacking gcc (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package libstdc++-15-dev:amd64. 175s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package g++-15-x86-64-linux-gnu. 175s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package g++-15. 175s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ... 175s Unpacking g++-15 (15.2.0-12ubuntu1) ... 175s Selecting previously unselected package g++-x86-64-linux-gnu. 175s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 175s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package g++. 175s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 175s Unpacking g++ (4:15.2.0-4ubuntu1) ... 175s Selecting previously unselected package build-essential. 175s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ... 175s Unpacking build-essential (12.12ubuntu2) ... 175s Selecting previously unselected package dctrl-tools. 175s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ... 175s Unpacking dctrl-tools (2.24-3build4) ... 175s Selecting previously unselected package fonts-dejavu-mono. 175s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 175s Unpacking fonts-dejavu-mono (2.37-8build1) ... 175s Selecting previously unselected package fonts-dejavu-core. 175s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ... 175s Unpacking fonts-dejavu-core (2.37-8build1) ... 175s Selecting previously unselected package fontconfig-config. 175s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 176s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 176s Selecting previously unselected package libfontconfig1:amd64. 176s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 176s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 176s Selecting previously unselected package fontconfig. 176s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 176s Unpacking fontconfig (2.17.1-3ubuntu1) ... 176s Selecting previously unselected package fonts-font-awesome. 176s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 176s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 176s Selecting previously unselected package fonts-glyphicons-halflings. 176s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 176s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 176s Selecting previously unselected package fonts-lmodern. 176s Preparing to unpack .../039-fonts-lmodern_2.005-1build1_all.deb ... 176s Unpacking fonts-lmodern (2.005-1build1) ... 176s Selecting previously unselected package fonts-mathjax. 176s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 176s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 176s Selecting previously unselected package libgfortran5:amd64. 176s Preparing to unpack .../041-libgfortran5_16-20260208-1ubuntu1_amd64.deb ... 176s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ... 176s Selecting previously unselected package libgfortran-15-dev:amd64. 176s Preparing to unpack .../042-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 176s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 176s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 176s Preparing to unpack .../043-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 176s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 176s Selecting previously unselected package gfortran-15. 176s Preparing to unpack .../044-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 176s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 176s Selecting previously unselected package gfortran-x86-64-linux-gnu. 176s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 176s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 176s Selecting previously unselected package gfortran. 176s Preparing to unpack .../046-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 176s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 176s Selecting previously unselected package icu-devtools. 176s Preparing to unpack .../047-icu-devtools_78.2-1ubuntu1_amd64.deb ... 176s Unpacking icu-devtools (78.2-1ubuntu1) ... 176s Selecting previously unselected package javascript-common. 176s Preparing to unpack .../048-javascript-common_12+nmu1build1_all.deb ... 176s Unpacking javascript-common (12+nmu1build1) ... 176s Selecting previously unselected package libsuitesparseconfig7:amd64. 176s Preparing to unpack .../049-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_amd64.deb ... 176s Unpacking libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ... 176s Selecting previously unselected package libamd3:amd64. 176s Preparing to unpack .../050-libamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 176s Unpacking libamd3:amd64 (1:7.12.1+dfsg-1) ... 176s Selecting previously unselected package libio-string-perl. 176s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 176s Unpacking libio-string-perl (1.08-4) ... 176s Selecting previously unselected package liblatex-tounicode-perl. 176s Preparing to unpack .../052-liblatex-tounicode-perl_1.93-1_all.deb ... 176s Unpacking liblatex-tounicode-perl (1.93-1) ... 176s Selecting previously unselected package libbibtex-parser-perl. 176s Preparing to unpack .../053-libbibtex-parser-perl_1.93+dfsg-1_all.deb ... 176s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ... 176s Selecting previously unselected package libblas3:amd64. 176s Preparing to unpack .../054-libblas3_3.12.1-7ubuntu1_amd64.deb ... 176s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 176s Selecting previously unselected package libblas-dev:amd64. 176s Preparing to unpack .../055-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 176s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 176s Selecting previously unselected package libbz2-dev:amd64. 176s Preparing to unpack .../056-libbz2-dev_1.0.8-6build2_amd64.deb ... 176s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 176s Selecting previously unselected package libpixman-1-0:amd64. 176s Preparing to unpack .../057-libpixman-1-0_0.46.4-1_amd64.deb ... 176s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 176s Selecting previously unselected package libxcb-render0:amd64. 176s Preparing to unpack .../058-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 176s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 176s Selecting previously unselected package libxcb-shm0:amd64. 176s Preparing to unpack .../059-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 176s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 176s Selecting previously unselected package libxrender1:amd64. 176s Preparing to unpack .../060-libxrender1_1%3a0.9.12-1_amd64.deb ... 176s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 176s Selecting previously unselected package libcairo2:amd64. 176s Preparing to unpack .../061-libcairo2_1.18.4-3_amd64.deb ... 176s Unpacking libcairo2:amd64 (1.18.4-3) ... 176s Selecting previously unselected package libcolamd3:amd64. 176s Preparing to unpack .../062-libcolamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 176s Unpacking libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 176s Selecting previously unselected package libdatrie1:amd64. 176s Preparing to unpack .../063-libdatrie1_0.2.14-1_amd64.deb ... 176s Unpacking libdatrie1:amd64 (0.2.14-1) ... 176s Selecting previously unselected package libdeflate0:amd64. 176s Preparing to unpack .../064-libdeflate0_1.23-2build1_amd64.deb ... 176s Unpacking libdeflate0:amd64 (1.23-2build1) ... 176s Selecting previously unselected package libdeflate-dev:amd64. 176s Preparing to unpack .../065-libdeflate-dev_1.23-2build1_amd64.deb ... 176s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 176s Selecting previously unselected package libltdl7:amd64. 176s Preparing to unpack .../066-libltdl7_2.5.4-9_amd64.deb ... 176s Unpacking libltdl7:amd64 (2.5.4-9) ... 176s Selecting previously unselected package libglpk40:amd64. 176s Preparing to unpack .../067-libglpk40_5.0-2_amd64.deb ... 176s Unpacking libglpk40:amd64 (5.0-2) ... 176s Selecting previously unselected package libgraphite2-3:amd64. 176s Preparing to unpack .../068-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 176s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 176s Selecting previously unselected package libharfbuzz0b:amd64. 176s Preparing to unpack .../069-libharfbuzz0b_12.3.2-1_amd64.deb ... 176s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 176s Selecting previously unselected package x11-common. 176s Preparing to unpack .../070-x11-common_1%3a7.7+24ubuntu1_all.deb ... 176s Unpacking x11-common (1:7.7+24ubuntu1) ... 176s Selecting previously unselected package libice6:amd64. 176s Preparing to unpack .../071-libice6_2%3a1.1.1-1build1_amd64.deb ... 176s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 176s Selecting previously unselected package libicu-dev:amd64. 176s Preparing to unpack .../072-libicu-dev_78.2-1ubuntu1_amd64.deb ... 176s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 177s Selecting previously unselected package libjpeg-turbo8:amd64. 177s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 177s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 177s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 177s Preparing to 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Selecting previously unselected package libpaper2:amd64. 177s Preparing to unpack .../105-libpaper2_2.2.5-0.3build1_amd64.deb ... 177s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 177s Selecting previously unselected package libpaper-utils. 177s Preparing to unpack .../106-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 177s Unpacking libpaper-utils (2.2.5-0.3build1) ... 177s Selecting previously unselected package libpcre2-16-0:amd64. 177s Preparing to unpack .../107-libpcre2-16-0_10.46-1_amd64.deb ... 177s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 177s Selecting previously unselected package libpcre2-32-0:amd64. 177s Preparing to unpack .../108-libpcre2-32-0_10.46-1_amd64.deb ... 177s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 177s Selecting previously unselected package libpcre2-posix3:amd64. 177s Preparing to unpack .../109-libpcre2-posix3_10.46-1_amd64.deb ... 177s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 177s Selecting previously unselected package libpcre2-dev:amd64. 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to unpack .../120-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 178s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 178s Selecting previously unselected package libteckit0:amd64. 178s Preparing to unpack .../121-libteckit0_2.5.13+ds-1_amd64.deb ... 178s Unpacking libteckit0:amd64 (2.5.13+ds-1) ... 178s Selecting previously unselected package libtexlua53-5:amd64. 178s Preparing to unpack .../122-libtexlua53-5_2025.20250727.75242+ds-5build1_amd64.deb ... 178s Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-5build1) ... 178s Selecting previously unselected package libjbig0:amd64. 178s Preparing to unpack .../123-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 178s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 178s Selecting previously unselected package libwebp7:amd64. 178s Preparing to unpack .../124-libwebp7_1.5.0-0.1build1_amd64.deb ... 178s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 178s Selecting previously unselected package libtiff6:amd64. 178s Preparing to unpack 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previously unselected package libxpm4:amd64. 178s Preparing to unpack .../131-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 178s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 178s Selecting previously unselected package libxaw7:amd64. 178s Preparing to unpack .../132-libxaw7_2%3a1.0.16-1build1_amd64.deb ... 178s Unpacking libxaw7:amd64 (2:1.0.16-1build1) ... 178s Selecting previously unselected package libxi6:amd64. 178s Preparing to unpack .../133-libxi6_2%3a1.8.2-2_amd64.deb ... 178s Unpacking libxi6:amd64 (2:1.8.2-2) ... 178s Selecting previously unselected package libzstd-dev:amd64. 178s Preparing to unpack .../134-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 178s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 178s Selecting previously unselected package libzzip-0-13t64:amd64. 178s Preparing to unpack .../135-libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb ... 178s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... 178s Selecting previously unselected package node-bootstrap-sass. 178s 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Selecting previously unselected package unzip. 178s Preparing to unpack .../142-unzip_6.0-29ubuntu1_amd64.deb ... 178s Unpacking unzip (6.0-29ubuntu1) ... 178s Selecting previously unselected package xdg-utils. 178s Preparing to unpack .../143-xdg-utils_1.2.1-2ubuntu2_all.deb ... 178s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 178s Selecting previously unselected package r-base-core. 178s Preparing to unpack .../144-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 178s Unpacking r-base-core (4.5.2-1ubuntu2) ... 179s Selecting previously unselected package liblzma-dev:amd64. 179s Preparing to unpack .../145-liblzma-dev_5.8.2-2_amd64.deb ... 179s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 179s Selecting previously unselected package pkgconf-bin. 179s Preparing to unpack .../146-pkgconf-bin_1.8.1-4build1_amd64.deb ... 179s Unpacking pkgconf-bin (1.8.1-4build1) ... 179s Selecting previously unselected package pkgconf:amd64. 179s Preparing to unpack .../147-pkgconf_1.8.1-4build1_amd64.deb ... 179s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 179s Selecting previously unselected package libtirpc-dev:amd64. 179s Preparing to unpack .../148-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 179s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 179s Selecting previously unselected package r-base-dev. 179s Preparing to unpack .../149-r-base-dev_4.5.2-1ubuntu2_all.deb ... 179s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 179s Selecting previously unselected package pkg-r-autopkgtest. 179s Preparing to unpack .../150-pkg-r-autopkgtest_20250812_all.deb ... 179s Unpacking pkg-r-autopkgtest (20250812) ... 179s Selecting previously unselected package r-bioc-biocgenerics. 179s Preparing to unpack .../151-r-bioc-biocgenerics_0.52.0-2_all.deb ... 179s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 179s Selecting previously unselected package r-bioc-biobase. 179s Preparing to unpack .../152-r-bioc-biobase_2.66.0-2_amd64.deb ... 179s Unpacking r-bioc-biobase (2.66.0-2) ... 179s Selecting previously unselected package r-cran-base64enc. 179s Preparing to unpack .../153-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 179s Unpacking r-cran-base64enc (0.1-3-3build1) ... 179s Selecting previously unselected package r-cran-digest. 179s Preparing to unpack .../154-r-cran-digest_0.6.39-1_amd64.deb ... 179s Unpacking r-cran-digest (0.6.39-1) ... 179s Selecting previously unselected package r-cran-fastmap. 179s Preparing to unpack .../155-r-cran-fastmap_1.2.0-1_amd64.deb ... 179s Unpacking r-cran-fastmap (1.2.0-1) ... 179s Selecting previously unselected package r-cran-rlang. 179s Preparing to unpack .../156-r-cran-rlang_1.1.5-3_amd64.deb ... 179s Unpacking r-cran-rlang (1.1.5-3) ... 179s Selecting previously unselected package r-cran-htmltools. 179s Preparing to unpack .../157-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 179s Unpacking r-cran-htmltools (0.5.8.1-1) ... 179s Selecting previously unselected package r-cran-evaluate. 179s Preparing to unpack .../158-r-cran-evaluate_1.0.5-1_all.deb ... 179s Unpacking r-cran-evaluate (1.0.5-1) ... 179s Selecting previously unselected package r-cran-xfun. 179s Preparing to unpack .../159-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 179s Unpacking r-cran-xfun (0.55+dfsg-1) ... 179s Selecting previously unselected package r-cran-highr. 179s Preparing to unpack .../160-r-cran-highr_0.11+dfsg-1_all.deb ... 179s Unpacking r-cran-highr (0.11+dfsg-1) ... 179s Selecting previously unselected package r-cran-yaml. 179s Preparing to unpack .../161-r-cran-yaml_2.3.10-1_amd64.deb ... 179s Unpacking r-cran-yaml (2.3.10-1) ... 179s Selecting previously unselected package libjs-mathjax. 179s Preparing to unpack .../162-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 179s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 179s Selecting previously unselected package r-cran-knitr. 179s Preparing to unpack .../163-r-cran-knitr_1.51+dfsg-1_all.deb ... 179s Unpacking r-cran-knitr (1.51+dfsg-1) ... 179s Selecting previously unselected package r-cran-cachem. 179s Preparing to unpack .../164-r-cran-cachem_1.1.0-1_amd64.deb ... 179s Unpacking r-cran-cachem (1.1.0-1) ... 179s Selecting previously unselected package r-cran-jquerylib. 179s Preparing to unpack .../165-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 179s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 179s Selecting previously unselected package r-cran-jsonlite. 179s Preparing to unpack .../166-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 179s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-cli. 179s Preparing to unpack .../167-r-cran-cli_3.6.4-1_amd64.deb ... 179s Unpacking r-cran-cli (3.6.4-1) ... 179s Selecting previously unselected package r-cran-lifecycle. 179s Preparing to unpack .../168-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 179s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 179s Selecting previously unselected package r-cran-memoise. 179s Preparing to unpack .../169-r-cran-memoise_2.0.1-1build1_all.deb ... 179s Unpacking r-cran-memoise (2.0.1-1build1) ... 179s Selecting previously unselected package r-cran-mime. 179s Preparing to unpack .../170-r-cran-mime_0.12-2_amd64.deb ... 179s Unpacking r-cran-mime (0.12-2) ... 179s Selecting previously unselected package r-cran-fs. 179s Preparing to unpack .../171-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 179s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 179s Selecting previously unselected package r-cran-r6. 179s Preparing to unpack .../172-r-cran-r6_2.6.1-1_all.deb ... 179s Unpacking r-cran-r6 (2.6.1-1) ... 179s Selecting previously unselected package r-cran-rappdirs. 179s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 179s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 179s Selecting previously unselected package r-cran-sass. 179s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 179s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 179s Selecting previously unselected package r-cran-bslib. 179s Preparing to unpack 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(0.2.4-1) ... 180s Selecting previously unselected package r-cran-rcpp. 180s Preparing to unpack .../181-r-cran-rcpp_1.1.0-1_amd64.deb ... 180s Unpacking r-cran-rcpp (1.1.0-1) ... 180s Selecting previously unselected package r-cran-later. 180s Preparing to unpack .../182-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 180s Unpacking r-cran-later (1.4.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-magrittr. 180s Preparing to unpack .../183-r-cran-magrittr_2.0.3-1_amd64.deb ... 180s Unpacking r-cran-magrittr (2.0.3-1) ... 180s Selecting previously unselected package r-cran-promises. 180s Preparing to unpack .../184-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 180s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 180s Selecting previously unselected package r-cran-httpuv. 180s Preparing to unpack .../185-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 180s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 180s Selecting previously unselected package r-cran-xtable. 180s Preparing to unpack .../186-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 180s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 180s Selecting previously unselected package r-cran-sourcetools. 180s Preparing to unpack .../187-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 180s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 180s Selecting previously unselected package r-cran-crayon. 180s Preparing to unpack .../188-r-cran-crayon_1.5.3-1_all.deb ... 180s Unpacking r-cran-crayon (1.5.3-1) ... 180s Selecting previously unselected package r-cran-withr. 180s Preparing to unpack .../189-r-cran-withr_3.0.2+dfsg-1_all.deb ... 180s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 180s Selecting previously unselected package r-cran-commonmark. 180s Preparing to unpack .../190-r-cran-commonmark_1.9.5-1_amd64.deb ... 180s Unpacking r-cran-commonmark (1.9.5-1) ... 180s Selecting previously unselected package r-cran-glue. 180s Preparing to unpack .../191-r-cran-glue_1.8.0-1_amd64.deb ... 180s Unpacking r-cran-glue (1.8.0-1) ... 180s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 180s Preparing to unpack .../192-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 180s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 180s Selecting previously unselected package r-cran-shiny. 180s Preparing to unpack .../193-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 180s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 180s Selecting previously unselected package r-cran-rmarkdown. 180s Preparing to unpack .../194-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 180s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 180s Selecting previously unselected package r-cran-bookdown. 180s Preparing to unpack .../195-r-cran-bookdown_0.42+dfsg-1_all.deb ... 180s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 180s Selecting previously unselected package r-cran-biocmanager. 180s Preparing to unpack .../196-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 180s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 180s Selecting previously unselected package tex-common. 180s Preparing to unpack .../197-tex-common_6.20_all.deb ... 180s Unpacking tex-common (6.20) ... 180s Selecting previously unselected package t1utils. 180s Preparing to unpack .../198-t1utils_1.41-4build4_amd64.deb ... 180s Unpacking t1utils (1.41-4build4) ... 180s Selecting previously unselected package texlive-binaries. 180s Preparing to unpack .../199-texlive-binaries_2025.20250727.75242+ds-5build1_amd64.deb ... 180s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 180s Selecting previously unselected package texlive-base. 180s Preparing to unpack .../200-texlive-base_2025.20260124-1_all.deb ... 180s Unpacking texlive-base (2025.20260124-1) ... 181s Selecting previously unselected package texlive-latex-base. 181s Preparing to unpack .../201-texlive-latex-base_2025.20260124-1_all.deb ... 181s Unpacking texlive-latex-base (2025.20260124-1) ... 181s Selecting previously unselected package texlive-bibtex-extra. 181s Preparing to unpack .../202-texlive-bibtex-extra_2025.20260124-1_all.deb ... 181s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 182s Selecting previously unselected package r-bioc-biocversion. 182s Preparing to unpack .../203-r-bioc-biocversion_3.20.0-2_all.deb ... 182s Unpacking r-bioc-biocversion (3.20.0-2) ... 182s Selecting previously unselected package r-bioc-biocstyle. 182s Preparing to unpack .../204-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 182s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-plyr. 182s Preparing to unpack .../205-r-cran-plyr_1.8.9-1_amd64.deb ... 182s Unpacking r-cran-plyr (1.8.9-1) ... 182s Selecting previously unselected package r-cran-lattice. 182s Preparing to unpack .../206-r-cran-lattice_0.22-7-1_amd64.deb ... 182s Unpacking r-cran-lattice (0.22-7-1) ... 182s Selecting previously unselected package r-cran-matrix. 182s Preparing to unpack .../207-r-cran-matrix_1.7-4-1_amd64.deb ... 182s Unpacking r-cran-matrix (1.7-4-1) ... 182s Selecting previously unselected package r-bioc-biomformat. 182s Preparing to unpack .../208-r-bioc-biomformat_1.34.0+dfsg-2_all.deb ... 182s Unpacking r-bioc-biomformat (1.34.0+dfsg-2) ... 182s Selecting previously unselected package r-bioc-s4vectors. 182s Preparing to unpack .../209-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 182s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 182s Selecting previously unselected package r-bioc-iranges. 182s Preparing to unpack .../210-r-bioc-iranges_2.40.1-3_amd64.deb ... 182s Unpacking r-bioc-iranges (2.40.1-3) ... 182s Selecting previously unselected package r-bioc-zlibbioc. 182s Preparing to unpack .../211-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 182s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 182s Selecting previously unselected package r-bioc-xvector. 182s Preparing to unpack .../212-r-bioc-xvector_0.46.0-2_amd64.deb ... 182s Unpacking r-bioc-xvector (0.46.0-2) ... 182s Selecting previously unselected package r-cran-curl. 182s Preparing to unpack .../213-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 182s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-sys. 182s Preparing to unpack .../214-r-cran-sys_3.4.3-1_amd64.deb ... 182s Unpacking r-cran-sys (3.4.3-1) ... 182s Selecting previously unselected package r-cran-askpass. 182s Preparing to unpack .../215-r-cran-askpass_1.2.1-1_amd64.deb ... 182s Unpacking r-cran-askpass (1.2.1-1) ... 182s Selecting previously unselected package r-cran-openssl. 182s Preparing to unpack .../216-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 182s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 182s Selecting previously unselected package r-cran-httr. 182s Preparing to unpack .../217-r-cran-httr_1.4.7+dfsg-1_all.deb ... 182s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 182s Selecting previously unselected package r-bioc-ucsc.utils. 182s Preparing to unpack .../218-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 182s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 182s Selecting previously unselected package r-bioc-genomeinfodbdata. 182s Preparing to unpack .../219-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 182s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 182s Selecting previously unselected package r-bioc-genomeinfodb. 182s Preparing to unpack .../220-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 182s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 182s Selecting previously unselected package r-bioc-biostrings. 182s Preparing to unpack .../221-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 182s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 182s Selecting previously unselected package r-cran-gtable. 182s Preparing to unpack .../222-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 182s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 182s Selecting previously unselected package r-cran-isoband. 182s Preparing to unpack .../223-r-cran-isoband_0.2.7-1_amd64.deb ... 182s Unpacking r-cran-isoband (0.2.7-1) ... 182s Selecting previously unselected package r-cran-s7. 182s Preparing to unpack .../224-r-cran-s7_0.2.0-1_amd64.deb ... 182s Unpacking r-cran-s7 (0.2.0-1) ... 182s Selecting previously unselected package r-cran-farver. 182s Preparing to unpack .../225-r-cran-farver_2.1.2-1_amd64.deb ... 182s Unpacking r-cran-farver (2.1.2-1) ... 182s Selecting previously unselected package r-cran-labeling. 182s Preparing to unpack .../226-r-cran-labeling_0.4.3-1_all.deb ... 182s Unpacking r-cran-labeling (0.4.3-1) ... 183s Selecting previously unselected package r-cran-rcolorbrewer. 183s Preparing to unpack .../227-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 183s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 183s Selecting previously unselected package r-cran-viridislite. 183s Preparing to unpack .../228-r-cran-viridislite_0.4.3-1_all.deb ... 183s Unpacking r-cran-viridislite (0.4.3-1) ... 183s Selecting previously unselected package r-cran-scales. 183s Preparing to unpack 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Selecting previously unselected package r-bioc-decontam. 183s Preparing to unpack .../235-r-bioc-decontam_1.26.0+dfsg-2_all.deb ... 183s Unpacking r-bioc-decontam (1.26.0+dfsg-2) ... 183s Selecting previously unselected package r-cran-survival. 183s Preparing to unpack .../236-r-cran-survival_3.8-6-1_amd64.deb ... 183s Unpacking r-cran-survival (3.8-6-1) ... 183s Selecting previously unselected package r-cran-mass. 183s Preparing to unpack .../237-r-cran-mass_7.3-65-1_amd64.deb ... 183s Unpacking r-cran-mass (7.3-65-1) ... 183s Selecting previously unselected package r-bioc-multtest. 183s Preparing to unpack .../238-r-bioc-multtest_2.62.0-2_amd64.deb ... 183s Unpacking r-bioc-multtest (2.62.0-2) ... 183s Selecting previously unselected package r-cran-pixmap. 183s Preparing to unpack .../239-r-cran-pixmap_0.4-14-1_all.deb ... 183s Unpacking r-cran-pixmap (0.4-14-1) ... 183s Selecting previously unselected package r-cran-sp. 183s Preparing to unpack .../240-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 183s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 183s Selecting previously unselected package r-cran-rcpparmadillo. 183s Preparing to unpack .../241-r-cran-rcpparmadillo_15.2.3-1-1_amd64.deb ... 183s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ... 183s Selecting previously unselected package r-cran-ade4. 183s Preparing to unpack .../242-r-cran-ade4_1.7-23-1_amd64.deb ... 183s Unpacking r-cran-ade4 (1.7-23-1) ... 183s Selecting previously unselected package r-cran-nlme. 183s Preparing to unpack .../243-r-cran-nlme_3.1.168-1_amd64.deb ... 183s Unpacking r-cran-nlme (3.1.168-1) ... 183s Selecting previously unselected package r-cran-ape. 183s Preparing to unpack .../244-r-cran-ape_5.8-1-1_amd64.deb ... 183s Unpacking r-cran-ape (5.8-1-1) ... 183s Selecting previously unselected package r-cran-cluster. 183s Preparing to unpack .../245-r-cran-cluster_2.1.8.2-1_amd64.deb ... 183s Unpacking r-cran-cluster (2.1.8.2-1) ... 183s Selecting previously 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188s Setting up r-bioc-multtest (2.62.0-2) ... 188s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 188s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 188s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 188s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 188s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 188s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 188s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 188s Setting up r-cran-bookdown (0.42+dfsg-1) ... 188s Setting up r-bioc-phyloseq (1.50.0+dfsg-2) ... 188s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 188s Processing triggers for libc-bin (2.42-2ubuntu4) ... 188s Processing triggers for man-db (2.13.1-1build1) ... 189s Processing triggers for install-info (7.2-5) ... 189s Processing triggers for tex-common (6.20) ... 189s Running updmap-sys. This may take some time... done. 189s Running mktexlsr /var/lib/texmf ... done. 189s Building format(s) --all. 203s This may take some time... done. 204s autopkgtest [04:09:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 204s autopkgtest [04:09:36]: test pkg-r-autopkgtest: [----------------------- 204s Test: Try to load the R library decontam 204s 204s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 204s Copyright (C) 2025 The R Foundation for Statistical Computing 204s Platform: x86_64-pc-linux-gnu 204s 204s R is free software and comes with ABSOLUTELY NO WARRANTY. 204s You are welcome to redistribute it under certain conditions. 204s Type 'license()' or 'licence()' for distribution details. 204s 204s R is a collaborative project with many contributors. 204s Type 'contributors()' for more information and 204s 'citation()' on how to cite R or R packages in publications. 204s 204s Type 'demo()' for some demos, 'help()' for on-line help, or 204s 'help.start()' for an HTML browser interface to help. 204s Type 'q()' to quit R. 204s 204s > library('decontam') 205s > 205s find: ‘tests’: No such file or directory 205s autopkgtest [04:09:37]: test pkg-r-autopkgtest: -----------------------] 206s pkg-r-autopkgtest PASS 206s autopkgtest [04:09:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 206s autopkgtest [04:09:38]: @@@@@@@@@@@@@@@@@@@@ summary 206s pkg-r-autopkgtest PASS