0s autopkgtest [04:04:21]: starting date and time: 2026-02-10 04:04:21+0000
  0s autopkgtest [04:04:21]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [04:04:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.go06jz_0/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-cummerbund --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-23.secgroup --name adt-resolute-amd64-r-bioc-cummerbund-20260210-040421-juju-7f2275-prod-proposed-migration-environment-2-be265aa6-ca14-4293-a202-f753798d85a0 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  4s Creating nova instance adt-resolute-amd64-r-bioc-cummerbund-20260210-040421-juju-7f2275-prod-proposed-migration-environment-2-be265aa6-ca14-4293-a202-f753798d85a0 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 76s autopkgtest [04:05:37]: testbed dpkg architecture: amd64
 77s autopkgtest [04:05:38]: testbed apt version: 3.1.14
 77s autopkgtest [04:05:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 77s autopkgtest [04:05:38]: testbed release detected to be: None
 78s autopkgtest [04:05:39]: updating testbed package index (apt update)
 78s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 78s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 78s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 78s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1735 kB]
 79s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.1 kB]
 79s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [181 kB]
 79s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [268 kB]
 79s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [220 kB]
 79s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
 79s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B]
 79s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [768 kB]
 79s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1791 kB]
 79s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [32.6 kB]
 79s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5020 B]
 79s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [26.4 kB]
 79s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
 80s Fetched 5189 kB in 2s (3307 kB/s)
 81s Reading package lists...
 81s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 81s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 81s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 81s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 82s Reading package lists...
 82s Reading package lists...
 82s Building dependency tree...
 82s Reading state information...
 82s Calculating upgrade...
 83s The following package was automatically installed and is no longer required:
 83s   libpython3.13
 83s Use 'sudo apt autoremove' to remove it.
 83s The following NEW packages will be installed:
 83s   gcc-16-base libpython3.14 libpython3.14-minimal libpython3.14-stdlib
 83s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
 83s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
 83s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
 83s The following packages will be upgraded:
 83s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
 83s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
 83s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
 83s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
 83s   iptables less libapt-pkg7.0 libatomic1 libattr1 libbpf1 libbsd0
 83s   libcryptsetup12 libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common
 83s   libdrm2 libevent-core-2.1-7t64 libgcc-s1 libgdbm-compat4t64 libgdbm6t64
 83s   libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0
 83s   libidn2-0 libip4tc2 libip6tc2 libjansson4 libkeyutils1 liblsof0
 83s   libmaxminddb0 libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64
 83s   libpci3 libsensors-config libsensors5 libstdc++6 libusb-1.0-0 libwrap0
 83s   libxau6 libxkbcommon0 libxtables12 linux-generic linux-headers-generic
 83s   linux-headers-virtual linux-image-generic linux-image-virtual linux-perf
 83s   linux-tools-common linux-virtual lsof man-db mawk patch pciutils pnp.ids
 83s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed
 83s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
 83s 90 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
 83s Need to get 237 MB of archives.
 83s After this operation, 339 MB of additional disk space will be used.
 83s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
 83s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 83s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 83s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 83s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-16-base amd64 16-20260208-1ubuntu1 [59.7 kB]
 83s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-s1 amd64 16-20260208-1ubuntu1 [80.3 kB]
 83s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
 83s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 83s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++6 amd64 16-20260208-1ubuntu1 [844 kB]
 83s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 83s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 83s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
 83s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
 83s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
 83s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
 83s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
 83s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
 83s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
 83s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 83s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 83s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
 83s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
 83s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
 83s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libatomic1 amd64 16-20260208-1ubuntu1 [11.4 kB]
 83s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
 83s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
 83s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
 83s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 83s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 83s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 83s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
 83s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 83s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
 83s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 83s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
 83s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
 83s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
 83s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 83s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 83s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 83s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
 83s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 83s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 83s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 83s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
 83s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 83s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
 83s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
 83s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
 83s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 83s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
 83s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
 83s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
 83s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 83s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 83s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
 83s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
 83s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
 83s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
 83s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
 83s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
 83s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
 83s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
 83s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 83s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 83s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
 83s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
 83s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
 83s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
 83s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 83s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
 83s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
 83s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
 83s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 83s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
 84s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 84s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 84s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 84s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
 84s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
 86s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
 87s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 87s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
 87s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
 87s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
 87s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
 87s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
 87s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
 87s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
 87s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
 87s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 87s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 87s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
 87s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
 87s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 87s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 87s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 87s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 87s Fetched 237 MB in 4s (55.4 MB/s)
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
 87s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
 87s Setting up debianutils (5.23.2build1) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
 88s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
 88s Setting up dash (0.5.12-12ubuntu3) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 88s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 88s Setting up findutils (4.10.0-3build2) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 88s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 88s Setting up sed (4.9-2build3) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 88s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 88s Setting up tar (1.35+dfsg-3.1build2) ...
 88s (Reading database ... 
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 98s Setting up libjansson4:amd64 (2.14-2build4) ...
 98s Setting up libglib2.0-data (2.87.2-2) ...
 98s Setting up pollinate (4.33-4ubuntu5) ...
108s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
108s Setting up libwrap0:amd64 (7.6.q-36build2) ...
108s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
110s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
110s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
110s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
110s Setting up libatomic1:amd64 (16-20260208-1ubuntu1) ...
110s Setting up patch (2.8-2build1) ...
110s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
110s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
110s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
110s Setting up lsof (4.99.4+dfsg-2build2) ...
110s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
110s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
110s Setting up dracut-install (109-11ubuntu1) ...
110s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
110s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
110s Setting up pnp.ids (0.394-1build1) ...
110s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
110s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
110s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
110s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
110s Setting up mawk (1.3.4.20260129-1) ...
110s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
110s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
110s Setting up linux-image-virtual (6.19.0-3.3) ...
110s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
110s Setting up libbsd0:amd64 (0.12.2-2build2) ...
110s Setting up libdrm-common (2.4.131-1) ...
110s Setting up libstdc++6:amd64 (16-20260208-1ubuntu1) ...
110s Setting up dbus-bin (1.16.2-2ubuntu3) ...
110s Setting up libonig5:amd64 (6.9.10-1build1) ...
110s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
110s Setting up ethtool (1:6.15-3build1) ...
110s Setting up python3-referencing (0.36.2-1ubuntu2) ...
110s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
110s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
110s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
110s Setting up tcpdump (4.99.5-2ubuntu3) ...
110s Setting up linux-image-generic (6.19.0-3.3) ...
110s Setting up wget (1.25.0-2ubuntu4) ...
110s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
110s Setting up iptables (1.8.11-2ubuntu3) ...
110s Setting up iproute2 (6.18.0-1ubuntu1) ...
110s Setting up linux-headers-generic (6.19.0-3.3) ...
110s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
110s Setting up hwdata (0.394-1build1) ...
110s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
110s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
110s No schema files found: doing nothing.
110s Setting up dbus (1.16.2-2ubuntu3) ...
110s A reboot is required to replace the running dbus-daemon.
110s Please reboot the system when convenient.
110s Setting up shared-mime-info (2.4-5build3) ...
111s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
111s Setting up pciutils (1:3.14.0-1build2) ...
111s Setting up python3-markdown-it (3.0.0-3build1) ...
111s Setting up libdrm2:amd64 (2.4.131-1) ...
111s Setting up libpython3.14:amd64 (3.14.2-1) ...
111s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
111s Setting up linux-tools-common (6.19.0-3.3) ...
111s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
111s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
111s Setting up apt (3.1.15) ...
112s Setting up linux-headers-virtual (6.19.0-3.3) ...
112s Setting up linux-generic (6.19.0-3.3) ...
112s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
112s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
112s Setting up ubuntu-standard (1.564) ...
112s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
112s Setting up linux-virtual (6.19.0-3.3) ...
112s Setting up linux-perf (6.19.0-3.3) ...
112s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
112s Processing triggers for debianutils (5.23.2build1) ...
112s Processing triggers for install-info (7.2-5) ...
112s Processing triggers for initramfs-tools (0.150ubuntu7) ...
112s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
117s Processing triggers for libc-bin (2.42-2ubuntu4) ...
117s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
117s /etc/kernel/postinst.d/initramfs-tools:
117s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
121s /etc/kernel/postinst.d/zz-update-grub:
121s Sourcing file `/etc/default/grub'
121s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
121s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
121s Generating grub configuration file ...
121s Found linux image: /boot/vmlinuz-6.19.0-3-generic
121s Found initrd image: /boot/initrd.img-6.19.0-3-generic
121s Found linux image: /boot/vmlinuz-6.18.0-9-generic
121s Found initrd image: /boot/initrd.img-6.18.0-9-generic
122s Warning: os-prober will not be executed to detect other bootable partitions.
122s Systems on them will not be added to the GRUB boot configuration.
122s Check GRUB_DISABLE_OS_PROBER documentation entry.
122s Adding boot menu entry for UEFI Firmware Settings ...
122s done
122s autopkgtest [04:06:23]: upgrading testbed (apt dist-upgrade and autopurge)
122s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s Calculating upgrade...
123s The following package was automatically installed and is no longer required:
123s   libpython3.13
123s Use 'sudo apt autoremove' to remove it.
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
124s Solving dependencies...
124s The following packages will be REMOVED:
124s   libpython3.13*
124s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
124s After this operation, 7599 kB disk space will be freed.
124s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125273 files and directories currently installed.)
124s Removing libpython3.13:amd64 (3.13.11-1) ...
124s Processing triggers for libc-bin (2.42-2ubuntu4) ...
124s autopkgtest [04:06:25]: rebooting testbed after setup commands that affected boot
152s autopkgtest [04:06:53]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
154s autopkgtest [04:06:55]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cummerbund
156s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-cummerbund 2.48.0-2 (dsc) [2268 B]
156s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-cummerbund 2.48.0-2 (tar) [2736 kB]
156s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-cummerbund 2.48.0-2 (diff) [4540 B]
156s gpgv: Signature made Tue Jan 14 11:32:36 2025 UTC
156s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
156s gpgv:                issuer "crusoe@debian.org"
156s gpgv: Can't check signature: No public key
156s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cummerbund_2.48.0-2.dsc: no acceptable signature found
156s autopkgtest [04:06:57]: testing package r-bioc-cummerbund version 2.48.0-2
156s autopkgtest [04:06:57]: build not needed
157s autopkgtest [04:06:58]: test pkg-r-autopkgtest: preparing testbed
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Solving dependencies...
158s The following NEW packages will be installed:
158s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
158s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
158s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15
158s   g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
158s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
158s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
158s   javascript-common libasan8 libblas-dev libblas3 libboost-dev
158s   libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
158s   libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
158s   libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3
158s   libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0
158s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
158s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
158s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
158s   libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js
158s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
158s   libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4
158s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
158s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
158s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
158s   libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev
158s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
158s   libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
158s   libxt6t64 libzstd-dev linux-libc-dev node-bootstrap-sass node-html5shiv
158s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
158s   r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter
158s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
158s   r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase
158s   r-bioc-bsgenome r-bioc-cummerbund r-bioc-delayedarray r-bioc-ensembldb
158s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
158s   r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges
158s   r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib
158s   r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
158s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils
158s   r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind
158s   r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh
158s   r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem
158s   r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools
158s   r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl
158s   r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat
158s   r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver
158s   r-cran-fastcluster r-cran-fastmap r-cran-filelock r-cran-fontawesome
158s   r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger
158s   r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue
158s   r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms
158s   r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
158s   r-cran-httr r-cran-httr2 r-cran-interp r-cran-isoband r-cran-jpeg
158s   r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
158s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
158s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
158s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-nnet
158s   r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
158s   r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises
158s   r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
158s   r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-restfulr r-cran-rjson
158s   r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite r-cran-rstudioapi
158s   r-cran-s7 r-cran-sass r-cran-scales r-cran-shiny r-cran-snow
158s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys
158s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8
158s   r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun
158s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
158s   x11-common xdg-utils zip zlib1g-dev
158s 0 upgraded, 295 newly installed, 0 to remove and 0 not upgraded.
158s Need to get 382 MB of archives.
158s After this operation, 1212 MB of additional disk space will be used.
158s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
158s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
158s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
158s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
158s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
159s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
159s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
159s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
159s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
159s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
159s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
159s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 16-20260208-1ubuntu1 [51.2 kB]
159s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 16-20260208-1ubuntu1 [162 kB]
159s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 16-20260208-1ubuntu1 [30.2 kB]
159s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 16-20260208-1ubuntu1 [3182 kB]
159s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 16-20260208-1ubuntu1 [1392 kB]
159s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 16-20260208-1ubuntu1 [2838 kB]
159s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 16-20260208-1ubuntu1 [1238 kB]
159s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 16-20260208-1ubuntu1 [1729 kB]
159s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 16-20260208-1ubuntu1 [155 kB]
159s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
160s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
160s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
160s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
160s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
160s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
160s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
160s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
160s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
160s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
160s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
160s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
160s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
160s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
160s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
160s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
160s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
160s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
160s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
161s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
161s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 16-20260208-1ubuntu1 [957 kB]
161s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
161s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
161s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
161s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
161s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
161s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
161s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
161s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
161s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
161s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB]
161s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B]
161s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
161s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
161s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
161s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
161s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
161s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
161s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
161s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
161s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
161s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
161s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
161s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
161s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
161s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
161s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
161s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
161s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B]
161s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B]
161s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B]
161s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
161s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
161s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
161s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
161s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
161s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
161s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
161s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
161s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
161s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
161s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
161s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
161s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
161s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
161s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
161s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
161s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
161s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
161s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
161s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
161s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
161s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
162s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
162s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
162s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
162s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
162s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
162s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
162s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
162s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
162s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
162s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
162s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
162s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
162s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
162s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
162s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
162s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
162s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
162s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
162s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
162s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
162s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
162s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
162s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
162s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
162s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
162s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
162s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
162s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
162s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
162s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
162s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
162s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
163s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
163s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
163s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
163s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
163s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
163s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
163s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
163s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
163s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
163s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
163s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
163s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
163s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB]
163s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
163s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
163s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
163s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
164s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
164s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB]
164s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
164s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
164s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
164s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
164s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB]
164s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
164s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
164s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
164s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
164s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
164s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
164s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
164s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
164s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
164s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
164s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
164s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
164s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
164s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
164s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
164s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
164s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
164s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
165s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
165s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
165s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB]
165s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB]
165s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB]
165s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB]
165s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
165s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
165s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
165s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB]
165s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
165s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
165s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
165s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
165s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB]
165s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB]
165s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
165s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
165s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB]
165s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB]
165s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
165s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
165s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB]
165s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB]
165s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB]
165s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB]
165s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB]
165s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
165s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
165s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB]
165s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB]
165s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
165s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB]
165s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
165s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB]
165s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
165s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB]
165s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB]
165s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
165s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
165s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
165s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB]
166s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB]
166s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
166s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
166s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s7 amd64 0.2.0-1 [328 kB]
166s Get:214 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB]
166s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB]
166s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
166s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB]
166s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB]
166s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB]
166s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB]
166s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreign amd64 0.8.91-1 [245 kB]
166s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB]
166s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB]
166s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
166s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
166s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
166s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
167s Get:228 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
167s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
167s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
167s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB]
167s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
167s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
167s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
167s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
167s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
167s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
167s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
167s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
167s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
167s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
167s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
167s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
167s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
167s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
167s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
167s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
167s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
167s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
167s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
167s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
167s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
167s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
167s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rstudioapi all 0.18.0-1 [326 kB]
167s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB]
167s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB]
167s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
167s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-chron amd64 2.3-62-1build1 [189 kB]
167s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB]
167s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
168s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB]
168s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB]
168s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
168s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-latticeextra all 0.6-31-1 [2177 kB]
168s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-acepack amd64 1.6.3-1 [86.2 kB]
168s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB]
168s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hmisc amd64 5.2-5-2 [3608 kB]
168s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB]
168s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB]
168s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
168s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
168s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB]
168s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB]
168s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB]
168s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
168s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB]
168s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB]
168s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB]
168s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB]
168s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB]
168s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB]
169s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB]
169s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB]
169s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rtracklayer amd64 1.66.0-3 [5225 kB]
169s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
169s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB]
169s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB]
169s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB]
169s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB]
169s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB]
169s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
169s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-reshape2 amd64 1.4.4-2build2 [123 kB]
169s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastcluster amd64 1.3.0-1build1 [193 kB]
170s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB]
170s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-cummerbund all 2.48.0-2 [2896 kB]
170s Preconfiguring packages ...
170s Fetched 382 MB in 12s (32.7 MB/s)
170s Selecting previously unselected package libc-dev-bin.
170s (Reading database ... 
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170s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
170s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
170s Selecting previously unselected package linux-libc-dev:amd64.
170s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
170s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
170s Selecting previously unselected package libcrypt-dev:amd64.
170s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
170s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
170s Selecting previously unselected package rpcsvc-proto.
170s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
170s Unpacking rpcsvc-proto (1.4.3-1build1) ...
170s Selecting previously unselected package libc6-dev:amd64.
170s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
170s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
171s Selecting previously unselected package libisl23:amd64.
171s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
171s Unpacking libisl23:amd64 (0.27-1build1) ...
171s Selecting previously unselected package libmpc3:amd64.
171s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
171s Unpacking libmpc3:amd64 (1.3.1-2) ...
171s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
171s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
171s Selecting previously unselected package cpp-15.
171s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
171s Selecting previously unselected package cpp-x86-64-linux-gnu.
171s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
171s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
171s Selecting previously unselected package cpp.
171s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
171s Unpacking cpp (4:15.2.0-4ubuntu1) ...
171s Selecting previously unselected package libcc1-0:amd64.
171s Preparing to unpack .../011-libcc1-0_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libcc1-0:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libgomp1:amd64.
171s Preparing to unpack .../012-libgomp1_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libgomp1:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libitm1:amd64.
171s Preparing to unpack .../013-libitm1_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libitm1:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libasan8:amd64.
171s Preparing to unpack .../014-libasan8_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libasan8:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package liblsan0:amd64.
171s Preparing to unpack .../015-liblsan0_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking liblsan0:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libtsan2:amd64.
171s Preparing to unpack .../016-libtsan2_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libtsan2:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libubsan1:amd64.
171s Preparing to unpack .../017-libubsan1_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libubsan1:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libhwasan0:amd64.
171s Preparing to unpack .../018-libhwasan0_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libhwasan0:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libquadmath0:amd64.
171s Preparing to unpack .../019-libquadmath0_16-20260208-1ubuntu1_amd64.deb ...
171s Unpacking libquadmath0:amd64 (16-20260208-1ubuntu1) ...
171s Selecting previously unselected package libgcc-15-dev:amd64.
171s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
171s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
171s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
171s Selecting previously unselected package gcc-15.
171s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
171s Selecting previously unselected package gcc-x86-64-linux-gnu.
171s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
171s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
171s Selecting previously unselected package gcc.
171s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
171s Unpacking gcc (4:15.2.0-4ubuntu1) ...
171s Selecting previously unselected package libstdc++-15-dev:amd64.
171s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
171s Selecting previously unselected package g++-15-x86-64-linux-gnu.
171s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
171s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
172s Selecting previously unselected package g++-15.
172s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
172s Unpacking g++-15 (15.2.0-12ubuntu1) ...
172s Selecting previously unselected package g++-x86-64-linux-gnu.
172s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
172s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
172s Selecting previously unselected package g++.
172s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
172s Unpacking g++ (4:15.2.0-4ubuntu1) ...
172s Selecting previously unselected package build-essential.
172s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
172s Unpacking build-essential (12.12ubuntu2) ...
172s Selecting previously unselected package dctrl-tools.
172s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
172s Unpacking dctrl-tools (2.24-3build4) ...
172s Selecting previously unselected package fonts-dejavu-mono.
172s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
172s Unpacking fonts-dejavu-mono (2.37-8build1) ...
172s Selecting previously unselected package fonts-dejavu-core.
172s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
172s Unpacking fonts-dejavu-core (2.37-8build1) ...
172s Selecting previously unselected package fontconfig-config.
172s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
172s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
172s Selecting previously unselected package libfontconfig1:amd64.
172s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
172s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
172s Selecting previously unselected package fontconfig.
172s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
172s Unpacking fontconfig (2.17.1-3ubuntu1) ...
172s Selecting previously unselected package fonts-font-awesome.
172s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
172s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
172s Selecting previously unselected package fonts-glyphicons-halflings.
172s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
172s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
172s Selecting previously unselected package fonts-mathjax.
172s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
172s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
172s Selecting previously unselected package libgfortran5:amd64.
172s Preparing to unpack .../040-libgfortran5_16-20260208-1ubuntu1_amd64.deb ...
172s Unpacking libgfortran5:amd64 (16-20260208-1ubuntu1) ...
172s Selecting previously unselected package libgfortran-15-dev:amd64.
172s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
172s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
172s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
172s Preparing to unpack .../042-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
172s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
172s Selecting previously unselected package gfortran-15.
172s Preparing to unpack .../043-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
172s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
172s Selecting previously unselected package gfortran-x86-64-linux-gnu.
172s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
172s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
172s Selecting previously unselected package gfortran.
172s Preparing to unpack .../045-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
172s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
172s Selecting previously unselected package icu-devtools.
172s Preparing to unpack .../046-icu-devtools_78.2-1ubuntu1_amd64.deb ...
172s Unpacking icu-devtools (78.2-1ubuntu1) ...
172s Selecting previously unselected package javascript-common.
172s Preparing to unpack .../047-javascript-common_12+nmu1build1_all.deb ...
172s Unpacking javascript-common (12+nmu1build1) ...
172s Selecting previously unselected package libblas3:amd64.
172s Preparing to unpack .../048-libblas3_3.12.1-7ubuntu1_amd64.deb ...
172s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
172s Selecting previously unselected package libblas-dev:amd64.
172s Preparing to unpack .../049-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
172s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
172s Selecting previously unselected package libboost1.90-dev:amd64.
172s Preparing to unpack .../050-libboost1.90-dev_1.90.0-2ubuntu1_amd64.deb ...
172s Unpacking libboost1.90-dev:amd64 (1.90.0-2ubuntu1) ...
173s Selecting previously unselected package libboost-dev:amd64.
173s Preparing to unpack .../051-libboost-dev_1.90.0.0ubuntu3_amd64.deb ...
173s Unpacking libboost-dev:amd64 (1.90.0.0ubuntu3) ...
173s Selecting previously unselected package libbz2-dev:amd64.
173s Preparing to unpack .../052-libbz2-dev_1.0.8-6build2_amd64.deb ...
173s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
173s Selecting previously unselected package libpixman-1-0:amd64.
173s Preparing to unpack .../053-libpixman-1-0_0.46.4-1_amd64.deb ...
173s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
173s Selecting previously unselected package libxcb-render0:amd64.
173s Preparing to unpack .../054-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
173s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
173s Selecting previously unselected package libxcb-shm0:amd64.
173s Preparing to unpack .../055-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
173s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
173s Selecting previously unselected package libxrender1:amd64.
173s Preparing to unpack .../056-libxrender1_1%3a0.9.12-1_amd64.deb ...
173s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
173s Selecting previously unselected package libcairo2:amd64.
173s Preparing to unpack .../057-libcairo2_1.18.4-3_amd64.deb ...
173s Unpacking libcairo2:amd64 (1.18.4-3) ...
173s Selecting previously unselected package libdatrie1:amd64.
173s Preparing to unpack .../058-libdatrie1_0.2.14-1_amd64.deb ...
173s Unpacking libdatrie1:amd64 (0.2.14-1) ...
173s Selecting previously unselected package libdeflate0:amd64.
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176s Selecting previously unselected package r-bioc-genomeinfodbdata.
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176s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
176s Selecting previously unselected package r-bioc-genomeinfodb.
176s Preparing to unpack .../164-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
176s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
177s Selecting previously unselected package r-cran-crayon.
177s Preparing to unpack .../165-r-cran-crayon_1.5.3-1_all.deb ...
177s Unpacking r-cran-crayon (1.5.3-1) ...
177s Selecting previously unselected package r-bioc-biostrings.
177s Preparing to unpack .../166-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ...
177s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
177s Selecting previously unselected package r-bioc-keggrest.
177s Preparing to unpack .../167-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ...
177s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ...
177s Selecting previously unselected package r-bioc-annotationdbi.
177s Preparing to unpack .../168-r-bioc-annotationdbi_1.68.0-2_all.deb ...
177s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
177s Selecting previously unselected package r-bioc-genomicranges.
177s Preparing to unpack .../169-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ...
177s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
177s Selecting previously unselected package r-cran-lazyeval.
177s Preparing to unpack .../170-r-cran-lazyeval_0.2.2-1build2_amd64.deb ...
177s Unpacking r-cran-lazyeval (0.2.2-1build2) ...
177s Selecting previously unselected package r-bioc-annotationfilter.
177s Preparing to unpack .../171-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ...
177s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ...
177s Selecting previously unselected package r-cran-generics.
177s Preparing to unpack .../172-r-cran-generics_0.1.4-1_all.deb ...
177s Unpacking r-cran-generics (0.1.4-1) ...
177s Selecting previously unselected package r-cran-magrittr.
177s Preparing to unpack .../173-r-cran-magrittr_2.0.3-1_amd64.deb ...
177s Unpacking r-cran-magrittr (2.0.3-1) ...
177s Selecting previously unselected package r-cran-utf8.
177s Preparing to unpack .../174-r-cran-utf8_1.2.4-1_amd64.deb ...
177s Unpacking r-cran-utf8 (1.2.4-1) ...
177s Selecting previously unselected package r-cran-pillar.
177s Preparing to unpack .../175-r-cran-pillar_1.11.1+dfsg-1_all.deb ...
177s Unpacking r-cran-pillar (1.11.1+dfsg-1) ...
177s Selecting previously unselected package r-cran-fansi.
177s Preparing to unpack .../176-r-cran-fansi_1.0.6-2_amd64.deb ...
177s Unpacking r-cran-fansi (1.0.6-2) ...
177s Selecting previously unselected package r-cran-tibble.
177s Preparing to unpack .../177-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
177s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
177s Selecting previously unselected package r-cran-withr.
177s Preparing to unpack .../178-r-cran-withr_3.0.2+dfsg-1_all.deb ...
177s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
177s Selecting previously unselected package r-cran-tidyselect.
177s Preparing to unpack .../179-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ...
177s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
177s Selecting previously unselected package r-cran-dplyr.
177s Preparing to unpack .../180-r-cran-dplyr_1.1.4-4_amd64.deb ...
177s Unpacking r-cran-dplyr (1.1.4-4) ...
177s Selecting previously unselected package r-cran-purrr.
177s Preparing to unpack .../181-r-cran-purrr_1.0.4-1_amd64.deb ...
177s Unpacking r-cran-purrr (1.0.4-1) ...
177s Selecting previously unselected package r-cran-stringi.
177s Preparing to unpack .../182-r-cran-stringi_1.8.4-1build2_amd64.deb ...
177s Unpacking r-cran-stringi (1.8.4-1build2) ...
177s Selecting previously unselected package r-cran-stringr.
177s Preparing to unpack .../183-r-cran-stringr_1.5.1-1_all.deb ...
177s Unpacking r-cran-stringr (1.5.1-1) ...
177s Selecting previously unselected package r-cran-tidyr.
177s Preparing to unpack .../184-r-cran-tidyr_1.3.1-1_amd64.deb ...
177s Unpacking r-cran-tidyr (1.3.1-1) ...
177s Selecting previously unselected package r-cran-dbplyr.
177s Preparing to unpack .../185-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ...
177s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ...
177s Selecting previously unselected package r-cran-filelock.
177s Preparing to unpack .../186-r-cran-filelock_1.0.3-1_amd64.deb ...
177s Unpacking r-cran-filelock (1.0.3-1) ...
177s Selecting previously unselected package r-bioc-biocfilecache.
177s Preparing to unpack .../187-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
177s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ...
177s Selecting previously unselected package r-bioc-biocio.
177s Preparing to unpack .../188-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
177s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
177s Selecting previously unselected package r-cran-formatr.
177s Preparing to unpack .../189-r-cran-formatr_1.14-2_all.deb ...
177s Unpacking r-cran-formatr (1.14-2) ...
177s Selecting previously unselected package r-cran-lambda.r.
177s Preparing to unpack .../190-r-cran-lambda.r_1.2.4-2build2_all.deb ...
177s Unpacking r-cran-lambda.r (1.2.4-2build2) ...
177s Selecting previously unselected package r-cran-futile.options.
177s Preparing to unpack .../191-r-cran-futile.options_1.0.1-3build2_all.deb ...
177s Unpacking r-cran-futile.options (1.0.1-3build2) ...
177s Selecting previously unselected package r-cran-futile.logger.
177s Preparing to unpack .../192-r-cran-futile.logger_1.4.3-4build2_all.deb ...
177s Unpacking r-cran-futile.logger (1.4.3-4build2) ...
177s Selecting previously unselected package r-cran-snow.
177s Preparing to unpack .../193-r-cran-snow_1%3a0.4.4-2build1_all.deb ...
177s Unpacking r-cran-snow (1:0.4.4-2build1) ...
177s Selecting previously unselected package r-cran-codetools.
177s Preparing to unpack .../194-r-cran-codetools_0.2-20-1build1_all.deb ...
177s Unpacking r-cran-codetools (0.2-20-1build1) ...
177s Selecting previously unselected package r-cran-bh.
177s Preparing to unpack .../195-r-cran-bh_1.84.0-1_all.deb ...
177s Unpacking r-cran-bh (1.84.0-1) ...
177s Selecting previously unselected package r-bioc-biocparallel.
177s Preparing to unpack .../196-r-bioc-biocparallel_1.40.0-2_amd64.deb ...
177s Unpacking r-bioc-biocparallel (1.40.0-2) ...
177s Selecting previously unselected package r-cran-hms.
177s Preparing to unpack .../197-r-cran-hms_1.1.4-1_all.deb ...
177s Unpacking r-cran-hms (1.1.4-1) ...
177s Selecting previously unselected package r-cran-prettyunits.
177s Preparing to unpack .../198-r-cran-prettyunits_1.2.0-1_all.deb ...
177s Unpacking r-cran-prettyunits (1.2.0-1) ...
177s Selecting previously unselected package r-cran-progress.
177s Preparing to unpack .../199-r-cran-progress_1.2.3-1_all.deb ...
177s Unpacking r-cran-progress (1.2.3-1) ...
177s Selecting previously unselected package r-cran-rappdirs.
177s Preparing to unpack .../200-r-cran-rappdirs_0.3.3-1build1_amd64.deb ...
177s Unpacking r-cran-rappdirs (0.3.3-1build1) ...
177s Selecting previously unselected package r-cran-httr2.
177s Preparing to unpack .../201-r-cran-httr2_1.1.1-2_all.deb ...
177s Unpacking r-cran-httr2 (1.1.1-2) ...
177s Selecting previously unselected package r-cran-digest.
177s Preparing to unpack .../202-r-cran-digest_0.6.39-1_amd64.deb ...
177s Unpacking r-cran-digest (0.6.39-1) ...
177s Selecting previously unselected package r-cran-xml2.
177s Preparing to unpack .../203-r-cran-xml2_1.4.1-1_amd64.deb ...
177s Unpacking r-cran-xml2 (1.4.1-1) ...
177s Selecting previously unselected package r-bioc-biomart.
177s Preparing to unpack .../204-r-bioc-biomart_2.62.1+dfsg-1_all.deb ...
177s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ...
177s Selecting previously unselected package r-cran-farver.
177s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ...
177s Unpacking r-cran-farver (2.1.2-1) ...
177s Selecting previously unselected package r-cran-labeling.
177s Preparing to unpack .../206-r-cran-labeling_0.4.3-1_all.deb ...
177s Unpacking r-cran-labeling (0.4.3-1) ...
177s Selecting previously unselected package r-cran-rcolorbrewer.
177s Preparing to unpack .../207-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ...
177s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ...
177s Selecting previously unselected package r-cran-viridislite.
177s Preparing to unpack .../208-r-cran-viridislite_0.4.3-1_all.deb ...
177s Unpacking r-cran-viridislite (0.4.3-1) ...
177s Selecting previously unselected package r-cran-scales.
177s Preparing to unpack .../209-r-cran-scales_1.4.0-1_all.deb ...
177s Unpacking r-cran-scales (1.4.0-1) ...
177s Selecting previously unselected package r-cran-gtable.
177s Preparing to unpack .../210-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
177s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
178s Selecting previously unselected package r-cran-isoband.
178s Preparing to unpack .../211-r-cran-isoband_0.2.7-1_amd64.deb ...
178s Unpacking r-cran-isoband (0.2.7-1) ...
178s Selecting previously unselected package r-cran-s7.
178s Preparing to unpack .../212-r-cran-s7_0.2.0-1_amd64.deb ...
178s Unpacking r-cran-s7 (0.2.0-1) ...
178s Selecting previously unselected package r-cran-ggplot2.
178s Preparing to unpack .../213-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ...
178s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ...
178s Selecting previously unselected package r-cran-cluster.
178s Preparing to unpack .../214-r-cran-cluster_2.1.8.2-1_amd64.deb ...
178s Unpacking r-cran-cluster (2.1.8.2-1) ...
178s Selecting previously unselected package r-cran-lattice.
178s Preparing to unpack .../215-r-cran-lattice_0.22-7-1_amd64.deb ...
178s Unpacking r-cran-lattice (0.22-7-1) ...
178s Selecting previously unselected package r-cran-matrix.
178s Preparing to unpack .../216-r-cran-matrix_1.7-4-1_amd64.deb ...
178s Unpacking r-cran-matrix (1.7-4-1) ...
178s Selecting previously unselected package r-cran-survival.
178s Preparing to unpack .../217-r-cran-survival_3.8-6-1_amd64.deb ...
178s Unpacking r-cran-survival (3.8-6-1) ...
178s Selecting previously unselected package r-cran-rpart.
178s Preparing to unpack .../218-r-cran-rpart_4.1.24-1build1_amd64.deb ...
178s Unpacking r-cran-rpart (4.1.24-1build1) ...
178s Selecting previously unselected package r-cran-nnet.
178s Preparing to unpack .../219-r-cran-nnet_7.3-20-1_amd64.deb ...
178s Unpacking r-cran-nnet (7.3-20-1) ...
178s Selecting previously unselected package r-cran-foreign.
178s Preparing to unpack .../220-r-cran-foreign_0.8.91-1_amd64.deb ...
178s Unpacking r-cran-foreign (0.8.91-1) ...
178s Selecting previously unselected package r-cran-gridextra.
178s Preparing to unpack .../221-r-cran-gridextra_2.3-3build2_all.deb ...
178s Unpacking r-cran-gridextra (2.3-3build2) ...
178s Selecting previously unselected package r-cran-data.table.
178s Preparing to unpack .../222-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ...
178s Unpacking r-cran-data.table (1.17.0+dfsg-1) ...
178s Selecting previously unselected package r-cran-evaluate.
178s Preparing to unpack .../223-r-cran-evaluate_1.0.5-1_all.deb ...
178s Unpacking r-cran-evaluate (1.0.5-1) ...
178s Selecting previously unselected package r-cran-xfun.
178s Preparing to unpack .../224-r-cran-xfun_0.55+dfsg-1_amd64.deb ...
178s Unpacking r-cran-xfun (0.55+dfsg-1) ...
178s Selecting previously unselected package r-cran-highr.
178s Preparing to unpack .../225-r-cran-highr_0.11+dfsg-1_all.deb ...
178s Unpacking r-cran-highr (0.11+dfsg-1) ...
178s Selecting previously unselected package r-cran-yaml.
178s Preparing to unpack .../226-r-cran-yaml_2.3.10-1_amd64.deb ...
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178s Selecting previously unselected package libjs-mathjax.
178s Preparing to unpack .../227-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ...
178s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ...
178s Selecting previously unselected package r-cran-knitr.
178s Preparing to unpack .../228-r-cran-knitr_1.51+dfsg-1_all.deb ...
178s Unpacking r-cran-knitr (1.51+dfsg-1) ...
178s Selecting previously unselected package r-cran-backports.
178s Preparing to unpack .../229-r-cran-backports_1.5.0-2_amd64.deb ...
178s Unpacking r-cran-backports (1.5.0-2) ...
178s Selecting previously unselected package r-cran-checkmate.
178s Preparing to unpack .../230-r-cran-checkmate_2.3.2-1_amd64.deb ...
178s Unpacking r-cran-checkmate (2.3.2-1) ...
178s Selecting previously unselected package r-cran-base64enc.
178s Preparing to unpack .../231-r-cran-base64enc_0.1-3-3build1_amd64.deb ...
178s Unpacking r-cran-base64enc (0.1-3-3build1) ...
178s Selecting previously unselected package r-cran-htmltools.
178s Preparing to unpack .../232-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
178s Unpacking r-cran-htmltools (0.5.8.1-1) ...
178s Selecting previously unselected package r-cran-jquerylib.
178s Preparing to unpack .../233-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ...
178s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ...
178s Selecting previously unselected package r-cran-fs.
178s Preparing to unpack .../234-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
178s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
178s Selecting previously unselected package r-cran-sass.
178s Preparing to unpack .../235-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
178s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
178s Selecting previously unselected package r-cran-bslib.
178s Preparing to unpack .../236-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ...
178s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ...
178s Selecting previously unselected package r-cran-fontawesome.
178s Preparing to unpack .../237-r-cran-fontawesome_0.5.3-1_all.deb ...
178s Unpacking r-cran-fontawesome (0.5.3-1) ...
179s Selecting previously unselected package r-cran-tinytex.
179s Preparing to unpack .../238-r-cran-tinytex_0.58-1_all.deb ...
179s Unpacking r-cran-tinytex (0.58-1) ...
179s Selecting previously unselected package libjs-modernizr.
179s Preparing to unpack .../239-libjs-modernizr_3.13.0-0.1build1_all.deb ...
179s Unpacking libjs-modernizr (3.13.0-0.1build1) ...
179s Selecting previously unselected package r-cran-littler.
179s Preparing to unpack .../240-r-cran-littler_0.3.22-1_amd64.deb ...
179s Unpacking r-cran-littler (0.3.22-1) ...
179s Selecting previously unselected package r-cran-pkgkitten.
179s Preparing to unpack .../241-r-cran-pkgkitten_0.2.4-1_all.deb ...
179s Unpacking r-cran-pkgkitten (0.2.4-1) ...
179s Selecting previously unselected package r-cran-rcpp.
179s Preparing to unpack .../242-r-cran-rcpp_1.1.0-1_amd64.deb ...
179s Unpacking r-cran-rcpp (1.1.0-1) ...
179s Selecting previously unselected package r-cran-later.
179s Preparing to unpack .../243-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
179s Unpacking r-cran-later (1.4.1+dfsg-1) ...
179s Selecting previously unselected package r-cran-promises.
179s Preparing to unpack .../244-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
179s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
179s Selecting previously unselected package r-cran-httpuv.
179s Preparing to unpack .../245-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
179s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
179s Selecting previously unselected package r-cran-xtable.
179s Preparing to unpack .../246-r-cran-xtable_1%3a1.8-4-2build1_all.deb ...
179s Unpacking r-cran-xtable (1:1.8-4-2build1) ...
179s Selecting previously unselected package r-cran-sourcetools.
179s Preparing to unpack .../247-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
179s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
179s Selecting previously unselected package r-cran-commonmark.
179s Preparing to unpack .../248-r-cran-commonmark_1.9.5-1_amd64.deb ...
179s Unpacking r-cran-commonmark (1.9.5-1) ...
179s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
179s Preparing to unpack .../249-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
179s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
179s Selecting previously unselected package r-cran-shiny.
179s Preparing to unpack .../250-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
179s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
179s Selecting previously unselected package r-cran-rmarkdown.
179s Preparing to unpack .../251-r-cran-rmarkdown_2.30+dfsg-1_all.deb ...
179s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ...
179s Selecting previously unselected package r-cran-htmlwidgets.
179s Preparing to unpack .../252-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
179s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
179s Selecting previously unselected package r-cran-rstudioapi.
179s Preparing to unpack .../253-r-cran-rstudioapi_0.18.0-1_all.deb ...
179s Unpacking r-cran-rstudioapi (0.18.0-1) ...
179s Selecting previously unselected package r-cran-htmltable.
179s Preparing to unpack .../254-r-cran-htmltable_2.4.3-1_all.deb ...
179s Unpacking r-cran-htmltable (2.4.3-1) ...
179s Selecting previously unselected package r-cran-colorspace.
179s Preparing to unpack .../255-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ...
179s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
179s Selecting previously unselected package r-cran-formula.
179s Preparing to unpack .../256-r-cran-formula_1.2-5-1_all.deb ...
179s Unpacking r-cran-formula (1.2-5-1) ...
179s Selecting previously unselected package r-cran-chron.
179s Preparing to unpack .../257-r-cran-chron_2.3-62-1build1_amd64.deb ...
179s Unpacking r-cran-chron (2.3-62-1build1) ...
179s Selecting previously unselected package r-cran-jpeg.
179s Preparing to unpack .../258-r-cran-jpeg_0.1-10-1_amd64.deb ...
179s Unpacking r-cran-jpeg (0.1-10-1) ...
179s Selecting previously unselected package r-cran-deldir.
179s Preparing to unpack .../259-r-cran-deldir_2.0-4-1build1_amd64.deb ...
179s Unpacking r-cran-deldir (2.0-4-1build1) ...
179s Selecting previously unselected package r-cran-rcppeigen.
179s Preparing to unpack .../260-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ...
179s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
179s Selecting previously unselected package r-cran-interp.
179s Preparing to unpack .../261-r-cran-interp_1.1-6-1_amd64.deb ...
179s Unpacking r-cran-interp (1.1-6-1) ...
179s Selecting previously unselected package r-cran-mass.
179s Preparing to unpack .../262-r-cran-mass_7.3-65-1_amd64.deb ...
179s Unpacking r-cran-mass (7.3-65-1) ...
179s Selecting previously unselected package r-cran-latticeextra.
179s Preparing to unpack .../263-r-cran-latticeextra_0.6-31-1_all.deb ...
179s Unpacking r-cran-latticeextra (0.6-31-1) ...
179s Selecting previously unselected package r-cran-acepack.
179s Preparing to unpack .../264-r-cran-acepack_1.6.3-1_amd64.deb ...
179s Unpacking r-cran-acepack (1.6.3-1) ...
179s Selecting previously unselected package r-cran-viridis.
179s Preparing to unpack .../265-r-cran-viridis_0.6.5-1_all.deb ...
179s Unpacking r-cran-viridis (0.6.5-1) ...
179s Selecting previously unselected package r-cran-hmisc.
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183s Setting up r-cran-cpp11 (0.5.3-1) ...
183s Setting up r-cran-plyr (1.8.9-1) ...
183s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
183s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
183s Setting up r-cran-isoband (0.2.7-1) ...
183s Setting up r-cran-futile.logger (1.4.3-4build2) ...
183s Setting up r-cran-scales (1.4.0-1) ...
183s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
183s Setting up r-cran-later (1.4.1+dfsg-1) ...
183s Setting up r-cran-matrix (1.7-4-1) ...
183s Setting up r-cran-htmltools (0.5.8.1-1) ...
183s Setting up r-cran-tinytex (0.58-1) ...
183s Setting up r-cran-knitr (1.51+dfsg-1) ...
183s Setting up g++ (4:15.2.0-4ubuntu1) ...
183s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
183s Setting up r-cran-cachem (1.1.0-1) ...
183s Setting up r-cran-sass (0.4.9+dfsg-1) ...
183s Setting up build-essential (12.12ubuntu2) ...
183s Setting up r-bioc-iranges (2.40.1-3) ...
183s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
183s Setting up r-cran-restfulr (0.0.15-1) ...
183s Setting up r-cran-vctrs (0.6.5-1) ...
183s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
183s Setting up r-cran-pillar (1.11.1+dfsg-1) ...
183s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
183s Setting up r-base-dev (4.5.2-1ubuntu2) ...
183s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
183s Setting up r-cran-stringr (1.5.1-1) ...
183s Setting up r-bioc-biocparallel (1.40.0-2) ...
183s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ...
183s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
183s Setting up r-cran-xml2 (1.4.1-1) ...
183s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
183s Setting up r-cran-fontawesome (0.5.3-1) ...
183s Setting up r-cran-survival (3.8-6-1) ...
183s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
183s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
183s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
183s Setting up r-cran-reshape2 (1.4.4-2build2) ...
183s Setting up r-cran-interp (1.1-6-1) ...
183s Setting up r-cran-httr2 (1.1.1-2) ...
183s Setting up r-cran-httr (1.4.7+dfsg-1) ...
183s Setting up r-cran-gridextra (2.3-3build2) ...
183s Setting up r-cran-hms (1.1.4-1) ...
183s Setting up r-cran-memoise (2.0.1-1build1) ...
183s Setting up r-cran-promises (1.3.2+dfsg-1) ...
183s Setting up r-cran-purrr (1.0.4-1) ...
183s Setting up r-cran-blob (1.3.0-1) ...
183s Setting up pkg-r-autopkgtest (20250812) ...
183s Setting up r-bioc-xvector (0.46.0-2) ...
183s Setting up r-cran-dplyr (1.1.4-4) ...
183s Setting up r-cran-rsqlite (2.3.9-1) ...
183s Setting up r-cran-progress (1.2.3-1) ...
183s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
183s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
183s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
183s Setting up r-cran-rpart (4.1.24-1build1) ...
183s Setting up r-cran-latticeextra (0.6-31-1) ...
183s Setting up r-cran-viridis (0.6.5-1) ...
183s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
183s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
183s Setting up r-cran-tidyr (1.3.1-1) ...
183s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ...
183s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
183s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
183s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
183s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
183s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ...
183s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
183s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
183s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
183s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
183s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
183s Setting up r-bioc-annotationdbi (1.68.0-2) ...
183s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
183s Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
183s Setting up r-bioc-genomicalignments (1.42.0-2) ...
183s Setting up r-bioc-rtracklayer (1.66.0-3) ...
183s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
183s Setting up r-cran-htmltable (2.4.3-1) ...
183s Setting up r-bioc-bsgenome (1.74.0-2) ...
183s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ...
183s Setting up r-cran-hmisc (5.2-5-2) ...
183s Setting up r-bioc-variantannotation (1.52.0-2) ...
183s Setting up r-bioc-biovizbase (1.54.0-2) ...
183s Setting up r-bioc-gviz (1.50.0+dfsg-2) ...
183s Setting up r-bioc-cummerbund (2.48.0-2) ...
183s Processing triggers for install-info (7.2-5) ...
183s Processing triggers for libc-bin (2.42-2ubuntu4) ...
183s Processing triggers for man-db (2.13.1-1build1) ...
185s autopkgtest [04:07:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
185s autopkgtest [04:07:26]: test pkg-r-autopkgtest: [-----------------------
185s Test: Try to load the R library cummeRbund
185s 
185s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
185s Copyright (C) 2025 The R Foundation for Statistical Computing
185s Platform: x86_64-pc-linux-gnu
185s 
185s R is free software and comes with ABSOLUTELY NO WARRANTY.
185s You are welcome to redistribute it under certain conditions.
185s Type 'license()' or 'licence()' for distribution details.
185s 
185s R is a collaborative project with many contributors.
185s Type 'contributors()' for more information and
185s 'citation()' on how to cite R or R packages in publications.
185s 
185s Type 'demo()' for some demos, 'help()' for on-line help, or
185s 'help.start()' for an HTML browser interface to help.
185s Type 'q()' to quit R.
185s 
185s > library('cummeRbund')
185s Loading required package: BiocGenerics
185s 
185s Attaching package: ‘BiocGenerics’
185s 
185s The following objects are masked from ‘package:stats’:
185s 
185s     IQR, mad, sd, var, xtabs
185s 
185s The following objects are masked from ‘package:base’:
185s 
185s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
185s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
185s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
185s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
185s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
185s     table, tapply, union, unique, unsplit, which.max, which.min
185s 
185s Loading required package: RSQLite
185s Loading required package: ggplot2
186s Loading required package: reshape2
186s Loading required package: fastcluster
186s 
186s Attaching package: ‘fastcluster’
186s 
186s The following object is masked from ‘package:stats’:
186s 
186s     hclust
186s 
186s Loading required package: rtracklayer
186s Loading required package: GenomicRanges
186s Loading required package: stats4
186s Loading required package: S4Vectors
186s 
186s Attaching package: ‘S4Vectors’
186s 
186s The following object is masked from ‘package:utils’:
186s 
186s     findMatches
186s 
186s The following objects are masked from ‘package:base’:
186s 
186s     expand.grid, I, unname
186s 
186s Loading required package: IRanges
187s Loading required package: GenomeInfoDb
191s Loading required package: Gviz
191s Loading required package: grid
195s > 
195s 
195s Attaching package: 'cummeRbund'
195s 
195s The following object is masked from 'package:GenomicRanges':
195s 
195s     promoters
195s 
195s The following object is masked from 'package:IRanges':
195s 
195s     promoters
195s 
195s The following object is masked from 'package:BiocGenerics':
195s 
195s     conditions
195s 
195s find: ‘tests’: No such file or directory
195s autopkgtest [04:07:36]: test pkg-r-autopkgtest: -----------------------]
196s pkg-r-autopkgtest    PASS
196s autopkgtest [04:07:37]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
196s autopkgtest [04:07:37]: @@@@@@@@@@@@@@@@@@@@ summary
196s pkg-r-autopkgtest    PASS