0s autopkgtest [11:17:26]: starting date and time: 2025-11-04 11:17:26+0000 0s autopkgtest [11:17:26]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:17:26]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qhijj4ki/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-gffutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-1.secgroup --name adt-resolute-amd64-python-gffutils-20251104-111725-juju-7f2275-prod-proposed-migration-environment-15-4a7bd5c6-5a90-4e3e-9c8c-50b6d86ff025 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-python-gffutils-20251104-111725-juju-7f2275-prod-proposed-migration-environment-15-4a7bd5c6-5a90-4e3e-9c8c-50b6d86ff025 from image adt/ubuntu-resolute-amd64-server-20251104.img (UUID e329c678-0fca-4d10-9e41-bfeb59fd2b3a)... 31s autopkgtest [11:17:57]: testbed dpkg architecture: amd64 31s autopkgtest [11:17:57]: testbed apt version: 3.1.11 32s autopkgtest [11:17:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 32s autopkgtest [11:17:58]: testbed release detected to be: None 32s autopkgtest [11:17:58]: updating testbed package index (apt update) 32s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 33s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 33s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 33s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 33s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 33s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1009 kB] 33s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [79.5 kB] 33s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.7 kB] 33s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [89.8 kB] 33s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [130 kB] 33s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [2980 B] 33s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 33s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 33s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 33s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [249 kB] 33s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [632 kB] 33s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [18.5 kB] 33s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [14.9 kB] 33s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [7180 B] 33s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [628 B] 34s Fetched 2423 kB in 1s (2687 kB/s) 34s Reading package lists... 35s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 35s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 35s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 35s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 36s Reading package lists... 36s Reading package lists... 36s Building dependency tree... 36s Reading state information... 36s Calculating upgrade... 36s The following packages will be upgraded: 36s base-passwd bash-completion iputils-tracepath liblz4-1 36s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 36s Need to get 358 kB of archives. 36s After this operation, 10.2 kB of additional disk space will be used. 36s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 base-passwd amd64 3.6.8 [54.9 kB] 36s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 liblz4-1 amd64 1.10.0-6 [74.2 kB] 36s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 bash-completion all 1:2.16.0-8 [214 kB] 36s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 iputils-tracepath amd64 3:20250605-1ubuntu1 [14.8 kB] 36s dpkg-preconfigure: unable to re-open stdin: No such file or directory 36s Fetched 358 kB in 0s (0 B/s) 36s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78551 files and directories currently installed.) 36s Preparing to unpack .../base-passwd_3.6.8_amd64.deb ... 36s Unpacking base-passwd (3.6.8) over (3.6.7) ... 36s Setting up base-passwd (3.6.8) ... 36s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78551 files and directories currently installed.) 36s Preparing to unpack .../liblz4-1_1.10.0-6_amd64.deb ... 36s Unpacking liblz4-1:amd64 (1.10.0-6) over (1.10.0-4build1) ... 36s Preparing to unpack .../bash-completion_1%3a2.16.0-8_all.deb ... 36s Unpacking bash-completion (1:2.16.0-8) over (1:2.16.0-7) ... 37s Preparing to unpack .../iputils-tracepath_3%3a20250605-1ubuntu1_amd64.deb ... 37s Unpacking iputils-tracepath (3:20250605-1ubuntu1) over (3:20240905-3ubuntu3) ... 37s Setting up liblz4-1:amd64 (1.10.0-6) ... 37s Setting up bash-completion (1:2.16.0-8) ... 37s Setting up iputils-tracepath (3:20250605-1ubuntu1) ... 37s Processing triggers for man-db (2.13.1-1) ... 37s Processing triggers for libc-bin (2.42-0ubuntu3) ... 37s autopkgtest [11:18:03]: upgrading testbed (apt dist-upgrade and autopurge) 37s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Calculating upgrade... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Solving dependencies... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 40s autopkgtest [11:18:06]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 40s autopkgtest [11:18:06]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gffutils 42s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (dsc) [2331 B] 42s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (tar) [1560 kB] 42s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (diff) [5460 B] 42s gpgv: Signature made Sat Aug 23 17:09:16 2025 UTC 42s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 42s gpgv: issuer "tchet@debian.org" 42s gpgv: Can't check signature: No public key 42s dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-3.dsc: no acceptable signature found 42s autopkgtest [11:18:08]: testing package python-gffutils version 0.13-3 42s autopkgtest [11:18:08]: build not needed 43s autopkgtest [11:18:09]: test run-unit-test: preparing testbed 43s Reading package lists... 43s Building dependency tree... 43s Reading state information... 43s Solving dependencies... 43s The following NEW packages will be installed: 43s fontconfig-config fonts-urw-base35 libblas3 libcairo2 libdeflate0 43s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 43s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 43s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 43s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 43s libxrender1 python3-argcomplete python3-argh python3-biopython python3-cairo 43s python3-charset-normalizer python3-freetype python3-gffutils 43s python3-iniconfig python3-numpy python3-numpy-dev python3-packaging 43s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 43s python3-rlpycairo sgml-base w3c-sgml-lib x11-common xfonts-encodings 43s xfonts-utils xml-core 43s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 43s Need to get 30.2 MB of archives. 43s After this operation, 105 MB of additional disk space will be used. 43s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 43s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 43s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 43s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 43s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 43s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 43s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 43s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 44s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 44s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 44s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 44s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 44s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 44s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 44s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 44s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 44s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 44s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 44s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 44s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 44s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 44s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 44s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 44s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 44s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 44s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 44s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 44s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 44s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 44s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 44s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 44s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-argcomplete all 3.6.2-1 [35.8 kB] 44s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.2-1 [129 kB] 44s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 44s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 44s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 44s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-2 [92.2 kB] 44s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-4 [9332 B] 44s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.4-2 [1147 kB] 44s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 44s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19 [20.3 kB] 44s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 44s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.85+dfsg-4 [1719 kB] 44s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-argh all 0.31.3-1 [27.0 kB] 44s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 44s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyfaidx all 0.8.1.3-2 [29.7 kB] 44s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-gffutils all 0.13-3 [1080 kB] 44s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-1 [6840 B] 44s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 44s Get:52 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pytest all 8.4.2-1 [268 kB] 44s Fetched 30.2 MB in 1s (34.6 MB/s) 44s Selecting previously unselected package python3-numpy-dev:amd64. 44s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78551 files and directories currently installed.) 44s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 44s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 44s Selecting previously unselected package libblas3:amd64. 44s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 44s Unpacking libblas3:amd64 (3.12.1-7) ... 44s Selecting previously unselected package libgfortran5:amd64. 44s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 44s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 44s Selecting previously unselected package liblapack3:amd64. 44s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 44s Unpacking liblapack3:amd64 (3.12.1-7) ... 44s Selecting previously unselected package python3-numpy. 44s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 44s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 44s Selecting previously unselected package libfontenc1:amd64. 44s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 44s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 44s Selecting previously unselected package x11-common. 44s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 44s Unpacking x11-common (1:7.7+24ubuntu1) ... 44s Selecting previously unselected package xfonts-encodings. 44s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 44s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 44s Selecting previously unselected package xfonts-utils. 44s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_amd64.deb ... 44s Unpacking xfonts-utils (1:7.7+7) ... 44s Selecting previously unselected package fonts-urw-base35. 44s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 44s Unpacking fonts-urw-base35 (20200910-8) ... 44s Selecting previously unselected package fontconfig-config. 44s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 45s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 45s Selecting previously unselected package libfontconfig1:amd64. 45s Preparing to unpack .../11-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 45s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 45s Selecting previously unselected package libpixman-1-0:amd64. 45s Preparing to unpack .../12-libpixman-1-0_0.46.4-1_amd64.deb ... 45s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 45s Selecting previously unselected package libxcb-render0:amd64. 45s Preparing to unpack .../13-libxcb-render0_1.17.0-2build1_amd64.deb ... 45s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 45s Selecting previously unselected package libxcb-shm0:amd64. 45s Preparing to unpack .../14-libxcb-shm0_1.17.0-2build1_amd64.deb ... 45s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 45s Selecting previously unselected package libxrender1:amd64. 45s Preparing to unpack .../15-libxrender1_1%3a0.9.12-1_amd64.deb ... 45s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 45s Selecting previously unselected package libcairo2:amd64. 45s Preparing to unpack .../16-libcairo2_1.18.4-1build1_amd64.deb ... 45s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 45s Selecting previously unselected package libdeflate0:amd64. 45s Preparing to unpack .../17-libdeflate0_1.23-2_amd64.deb ... 45s Unpacking libdeflate0:amd64 (1.23-2) ... 45s Selecting previously unselected package libgomp1:amd64. 45s Preparing to unpack .../18-libgomp1_15.2.0-7ubuntu1_amd64.deb ... 45s Unpacking libgomp1:amd64 (15.2.0-7ubuntu1) ... 45s Selecting previously unselected package libgraphite2-3:amd64. 45s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 45s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 45s Selecting previously unselected package libharfbuzz0b:amd64. 45s Preparing to unpack .../20-libharfbuzz0b_12.1.0-1_amd64.deb ... 45s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 45s Selecting previously unselected package libimagequant0:amd64. 45s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_amd64.deb ... 45s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 45s Selecting previously unselected package libjpeg-turbo8:amd64. 45s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 45s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 45s Selecting previously unselected package libjpeg8:amd64. 45s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_amd64.deb ... 45s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 45s Selecting previously unselected package liblcms2-2:amd64. 45s Preparing to unpack .../24-liblcms2-2_2.16-2_amd64.deb ... 45s Unpacking liblcms2-2:amd64 (2.16-2) ... 45s Selecting previously unselected package liblerc4:amd64. 45s Preparing to unpack .../25-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 45s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 45s Selecting previously unselected package libraqm0:amd64. 45s Preparing to unpack .../26-libraqm0_0.10.3-1_amd64.deb ... 45s Unpacking libraqm0:amd64 (0.10.3-1) ... 45s Selecting previously unselected package libsharpyuv0:amd64. 45s Preparing to unpack .../27-libsharpyuv0_1.5.0-0.1_amd64.deb ... 45s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 45s Selecting previously unselected package libjbig0:amd64. 45s Preparing to unpack .../28-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 45s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 45s Selecting previously unselected package libwebp7:amd64. 45s Preparing to unpack .../29-libwebp7_1.5.0-0.1_amd64.deb ... 45s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 45s Selecting previously unselected package libtiff6:amd64. 45s Preparing to unpack .../30-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 45s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 45s Selecting previously unselected package libwebpdemux2:amd64. 45s Preparing to unpack .../31-libwebpdemux2_1.5.0-0.1_amd64.deb ... 45s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 45s Selecting previously unselected package libwebpmux3:amd64. 45s Preparing to unpack .../32-libwebpmux3_1.5.0-0.1_amd64.deb ... 45s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 45s Selecting previously unselected package python3-argcomplete. 45s Preparing to unpack .../33-python3-argcomplete_3.6.2-1_all.deb ... 45s Unpacking python3-argcomplete (3.6.2-1) ... 45s Selecting previously unselected package python3-charset-normalizer. 45s Preparing to unpack .../34-python3-charset-normalizer_3.4.2-1_amd64.deb ... 45s Unpacking 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/usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 46s Setting up python3-pytest (8.4.2-1) ... 46s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 46s Setting up xfonts-utils (1:7.7+7) ... 46s Setting up libraqm0:amd64 (0.10.3-1) ... 46s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 47s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 47s Setting up xml-core (0.19) ... 47s Setting up fonts-urw-base35 (20200910-8) ... 47s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 47s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 48s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 48s Setting up libcairo2:amd64 (1.18.4-1build1) ... 48s Setting up python3-cairo (1.27.0-2build1) ... 48s Setting up python3-rlpycairo (0.3.0-4) ... 48s Setting up python3-reportlab (4.4.4-2) ... 48s Processing triggers for libc-bin (2.42-0ubuntu3) ... 48s Processing triggers for man-db (2.13.1-1) ... 48s Processing triggers for sgml-base (1.31+nmu1) ... 48s Setting up w3c-sgml-lib (1.3-3) ... 64s Setting up python3-biopython (1.85+dfsg-4) ... 64s Setting up python3-gffutils (0.13-3) ... 65s autopkgtest [11:18:31]: test run-unit-test: [----------------------- 66s + pkg=python-gffutils 66s + [ /tmp/autopkgtest.wBLEom/autopkgtest_tmp = ] 66s + cd /tmp/autopkgtest.wBLEom/autopkgtest_tmp 66s + export HOME=/tmp/autopkgtest.wBLEom/autopkgtest_tmp 66s + cp -r /usr/lib/python3/dist-packages/gffutils/test ./ 66s + pytest --doctest-modules -m not slow test 66s ============================= test session starts ============================== 66s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 66s rootdir: /tmp/autopkgtest.wBLEom/autopkgtest_tmp 66s plugins: typeguard-4.4.2 66s collected 110 items 66s 66s test/feature_test.py ........... [ 10%] 66s test/helpers_test.py .. [ 11%] 66s test/parser_test.py .................. [ 28%] 66s test/test_1.py ......................s........... [ 59%] 66s test/test_biopython_integration.py . [ 60%] 67s test/test_cli.py . [ 60%] 67s test/test_issues.py ........................ [ 82%] 67s test/test_iterators.py .... [ 86%] 67s test/test_merge.py ......... [ 94%] 67s test/test_merge_all.py ...... [100%] 67s 67s =============================== warnings summary =============================== 67s test/performance_evaluation.py:190 67s /tmp/autopkgtest.wBLEom/autopkgtest_tmp/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 67s @pytest.mark.slow 67s 67s test/performance_evaluation.py:208 67s /tmp/autopkgtest.wBLEom/autopkgtest_tmp/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 67s @pytest.mark.slow 67s 67s test/parser_test.py::test_parser_from_string 67s /usr/lib/python3/dist-packages/_pytest/python.py:161: PytestReturnNotNoneWarning: Test functions should return None, but test/parser_test.py::test_parser_from_string returned . 67s Did you mean to use `assert` instead of `return`? 67s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 67s warnings.warn( 67s 67s test/parser_test.py::test_inconsistent_dialect 67s test/test_1.py::test_disable_infer 67s test/test_issues.py::test_pr_172 67s /usr/lib/python3/dist-packages/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation 67s warnings.warn( 67s 67s test/test_1.py::test_disable_infer 67s /usr/lib/python3/dist-packages/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation 67s warnings.warn( 67s 67s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 67s ================== 109 passed, 1 skipped, 7 warnings in 1.24s ================== 67s autopkgtest [11:18:33]: test run-unit-test: -----------------------] 67s autopkgtest [11:18:33]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 67s run-unit-test PASS 68s autopkgtest [11:18:34]: @@@@@@@@@@@@@@@@@@@@ summary 68s run-unit-test PASS