0s autopkgtest [05:49:21]: starting date and time: 2025-11-14 05:49:21+0000 0s autopkgtest [05:49:21]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [05:49:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q9d11wm4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade presto --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:2.3.4+ds-3ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-5.secgroup --name adt-resolute-amd64-presto-20251114-054921-juju-7f2275-prod-proposed-migration-environment-2-5e2428a2-2f22-4132-ac43-5e09f169d542 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-presto-20251114-054921-juju-7f2275-prod-proposed-migration-environment-2-5e2428a2-2f22-4132-ac43-5e09f169d542 from image adt/ubuntu-resolute-amd64-server-20251113.img (UUID d44790b8-9c68-4bcd-ba8f-9a124f30eed8)... 44s autopkgtest [05:50:05]: testbed dpkg architecture: amd64 44s autopkgtest [05:50:05]: testbed apt version: 3.1.11 44s autopkgtest [05:50:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s autopkgtest [05:50:05]: testbed release detected to be: None 45s autopkgtest [05:50:06]: updating testbed package index (apt update) 45s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 45s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 45s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 45s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 45s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [787 kB] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [83.2 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.4 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [160 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [117 kB] 46s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3120 B] 46s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 46s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 46s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 46s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [477 kB] 46s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [236 kB] 46s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [16.0 kB] 46s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [12.9 kB] 46s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5984 B] 46s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [628 B] 47s Fetched 2088 kB in 1s (2172 kB/s) 47s Reading package lists... 48s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 48s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 49s Reading package lists... 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 49s The following packages will be upgraded: 49s 3cpio cron cron-daemon-common fwupd libcap2 libcap2-bin libfwupd3 libpam-cap 49s liburcu8t64 libxml2-16 lto-disabled-list 49s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 7045 kB of archives. 49s After this operation, 53.2 kB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 cron amd64 3.0pl1-200ubuntu1 [88.6 kB] 49s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libcap2 amd64 1:2.75-10ubuntu1 [31.1 kB] 49s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libpam-cap amd64 1:2.75-10ubuntu1 [12.7 kB] 49s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libcap2-bin amd64 1:2.75-10ubuntu1 [33.5 kB] 49s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [632 kB] 49s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cron-daemon-common all 3.0pl1-200ubuntu1 [15.7 kB] 49s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 liburcu8t64 amd64 0.15.5-1 [64.2 kB] 49s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.12.0-1ubuntu1 [286 kB] 49s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fwupd amd64 2.0.17-6 [5730 kB] 49s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfwupd3 amd64 2.0.17-6 [139 kB] 49s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 lto-disabled-list all 72 [12.4 kB] 50s dpkg-preconfigure: unable to re-open stdin: No such file or directory 50s Fetched 7045 kB in 0s (18.0 MB/s) 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82963 files and directories currently installed.) 50s Preparing to unpack .../cron_3.0pl1-200ubuntu1_amd64.deb ... 50s Unpacking cron (3.0pl1-200ubuntu1) over (3.0pl1-196ubuntu2) ... 50s Preparing to unpack .../libcap2_1%3a2.75-10ubuntu1_amd64.deb ... 50s Unpacking libcap2:amd64 (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 50s Setting up libcap2:amd64 (1:2.75-10ubuntu1) ... 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82963 files and directories currently installed.) 50s Preparing to unpack .../0-libpam-cap_1%3a2.75-10ubuntu1_amd64.deb ... 50s Unpacking libpam-cap:amd64 (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 50s Preparing to unpack .../1-libcap2-bin_1%3a2.75-10ubuntu1_amd64.deb ... 50s Unpacking libcap2-bin (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 50s Preparing to unpack .../2-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... 50s Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) over (2.14.5+dfsg-0.2build1) ... 50s Preparing to unpack .../3-cron-daemon-common_3.0pl1-200ubuntu1_all.deb ... 50s Unpacking cron-daemon-common (3.0pl1-200ubuntu1) over (3.0pl1-196ubuntu2) ... 50s Preparing to unpack .../4-liburcu8t64_0.15.5-1_amd64.deb ... 50s Unpacking liburcu8t64:amd64 (0.15.5-1) over (0.15.4-1) ... 50s Preparing to unpack .../5-3cpio_0.12.0-1ubuntu1_amd64.deb ... 50s Unpacking 3cpio (0.12.0-1ubuntu1) over (0.11.0-2ubuntu2) ... 50s Preparing to unpack .../6-fwupd_2.0.17-6_amd64.deb ... 50s Unpacking fwupd (2.0.17-6) over (2.0.17-2) ... 51s Preparing to unpack .../7-libfwupd3_2.0.17-6_amd64.deb ... 51s Unpacking libfwupd3:amd64 (2.0.17-6) over (2.0.17-2) ... 51s Preparing to unpack .../8-lto-disabled-list_72_all.deb ... 51s Unpacking lto-disabled-list (72) over (71) ... 51s Setting up liburcu8t64:amd64 (0.15.5-1) ... 51s Setting up 3cpio (0.12.0-1ubuntu1) ... 51s Setting up lto-disabled-list (72) ... 51s Setting up libxml2-16:amd64 (2.15.1+dfsg-0.3) ... 51s Setting up libfwupd3:amd64 (2.0.17-6) ... 51s Setting up libcap2-bin (1:2.75-10ubuntu1) ... 51s Setting up libpam-cap:amd64 (1:2.75-10ubuntu1) ... 51s Setting up fwupd (2.0.17-6) ... 51s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 51s fwupd.service is a disabled or a static unit not running, not starting it. 51s Setting up cron-daemon-common (3.0pl1-200ubuntu1) ... 51s Setting up cron (3.0pl1-200ubuntu1) ... 52s Processing triggers for dbus (1.16.2-2ubuntu2) ... 52s Processing triggers for libc-bin (2.42-2ubuntu2) ... 52s Processing triggers for man-db (2.13.1-1) ... 53s autopkgtest [05:50:14]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Solving dependencies... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s autopkgtest [05:50:15]: rebooting testbed after setup commands that affected boot 82s autopkgtest [05:50:43]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 84s autopkgtest [05:50:45]: @@@@@@@@@@@@@@@@@@@@ apt-source presto 86s Get:1 http://ftpmaster.internal/ubuntu resolute/universe presto 0.7.5-1 (dsc) [2259 B] 86s Get:2 http://ftpmaster.internal/ubuntu resolute/universe presto 0.7.5-1 (tar) [93.2 kB] 86s Get:3 http://ftpmaster.internal/ubuntu resolute/universe presto 0.7.5-1 (diff) [21.9 kB] 86s gpgv: Signature made Sun Aug 17 18:16:35 2025 UTC 86s gpgv: using RSA key DF3E2E424A7E279C2E4B023AB9C29AEEB2F450A7 86s gpgv: issuer "moeller@debian.org" 86s gpgv: Can't check signature: No public key 86s dpkg-source: warning: cannot verify inline signature for ./presto_0.7.5-1.dsc: no acceptable signature found 86s autopkgtest [05:50:47]: testing package presto version 0.7.5-1 86s autopkgtest [05:50:47]: build not needed 87s autopkgtest [05:50:48]: test pybuild-autopkgtest: preparing testbed 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Solving dependencies... 87s The following NEW packages will be installed: 87s autoconf automake autopoint autotools-dev build-essential cd-hit cpp cpp-15 87s cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 87s dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config 87s fonts-urw-base35 g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 87s gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 87s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 87s libdeflate0 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 87s libgcc-15-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 87s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 87s liblcms2-2 liblerc4 liblsan0 libmbedcrypto16 libmbedtls21 libmbedx509-7 87s libmpc3 libncbi-vdb3 libopenjp2-7 libpixman-1-0 libquadmath0 libraqm0 87s libsharpyuv0 libstdc++-15-dev libtiff6 libtool libtsan2 libubsan1 libwebp7 87s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 m4 87s ncbi-blast+ ncbi-data ncbi-vdb-data po-debconf presto 87s pybuild-plugin-autopkgtest python3-all python3-biopython python3-cairo 87s python3-charset-normalizer python3-decorator python3-freetype python3-numpy 87s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 87s python3-presto python3-pytz python3-reportlab python3-rlpycairo 87s python3-scipy sgml-base vsearch w3c-sgml-lib x11-common xfonts-encodings 87s xfonts-utils xml-core 87s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 160 MB of archives. 87s After this operation, 642 MB of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-numpy-dev amd64 1:2.3.4+ds-3ubuntu1 [147 kB] 87s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 87s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 88s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 88s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-numpy amd64 1:2.3.4+ds-3ubuntu1 [8126 kB] 88s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 m4 amd64 1.4.20-2 [217 kB] 88s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 autoconf all 2.72-3.1ubuntu1 [384 kB] 88s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 autotools-dev all 20240727.1 [43.4 kB] 88s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 automake all 1:1.18.1-2 [581 kB] 88s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 autopoint all 0.23.1-2build2 [619 kB] 88s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1 [685 kB] 88s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 88s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-7ubuntu1 [12.9 MB] 88s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-7ubuntu1 [1026 B] 88s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 88s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 88s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-7ubuntu1 [47.4 kB] 88s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 88s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-7ubuntu1 [29.7 kB] 88s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-7ubuntu1 [3071 kB] 88s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-7ubuntu1 [1360 kB] 88s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-7ubuntu1 [2757 kB] 89s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-7ubuntu1 [1210 kB] 89s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-7ubuntu1 [1685 kB] 89s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-7ubuntu1 [153 kB] 89s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-7ubuntu1 [2864 kB] 89s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-7ubuntu1 [25.4 MB] 89s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-7ubuntu1 [524 kB] 89s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 89s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 89s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-7ubuntu1 [2573 kB] 89s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-7ubuntu1 [14.4 MB] 90s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-7ubuntu1 [23.7 kB] 90s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 90s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 90s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 90s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 cd-hit amd64 4.8.1-4 [521 kB] 90s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 90s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtool all 2.5.4-7 [169 kB] 90s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 dh-autoreconf all 21 [12.5 kB] 90s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 90s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [20.5 kB] 90s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 dh-strip-nondeterminism all 1.15.0-1 [5090 B] 90s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 debugedit amd64 1:5.2-3 [49.9 kB] 90s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 dwz amd64 0.16-2 [115 kB] 90s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gettext amd64 0.23.1-2build2 [1043 kB] 90s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 90s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 90s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 debhelper all 13.24.2ubuntu1 [896 kB] 90s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 dh-python all 6.20250414 [119 kB] 90s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 90s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 90s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 90s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 90s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 90s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 90s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 90s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 90s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 90s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 90s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 90s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 90s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 90s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 90s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 90s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 90s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 90s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 90s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 90s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 90s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedcrypto16 amd64 3.6.2-3ubuntu1 [276 kB] 90s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedx509-7 amd64 3.6.2-3ubuntu1 [37.1 kB] 90s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedtls21 amd64 3.6.2-3ubuntu1 [126 kB] 90s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB] 90s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1376 kB] 90s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 90s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 90s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 90s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 90s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 90s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 90s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 90s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB] 90s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] 90s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.3-1 [174 kB] 90s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 90s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 90s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 90s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-2 [92.2 kB] 90s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-4 [9332 B] 90s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.4-2 [1147 kB] 90s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 90s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19 [20.3 kB] 90s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 91s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.85+dfsg-4 [1719 kB] 91s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 91s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-1ubuntu1 [7668 kB] 91s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 91s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 91s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 91s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 vsearch amd64 2.30.0-1 [471 kB] 91s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-presto amd64 0.7.5-1 [81.3 kB] 91s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 presto all 0.7.5-1 [66.2 kB] 91s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 pybuild-plugin-autopkgtest all 6.20250414 [1746 B] 91s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.7-1 [884 B] 91s Fetched 160 MB in 4s (41.1 MB/s) 91s Selecting previously unselected package python3-numpy-dev:amd64. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82962 files and directories currently installed.) 92s Preparing to unpack .../000-python3-numpy-dev_1%3a2.3.4+ds-3ubuntu1_amd64.deb ... 92s Unpacking python3-numpy-dev:amd64 (1:2.3.4+ds-3ubuntu1) ... 92s Selecting previously unselected package libblas3:amd64. 92s Preparing to unpack .../001-libblas3_3.12.1-7_amd64.deb ... 92s Unpacking libblas3:amd64 (3.12.1-7) ... 92s Selecting previously unselected package libgfortran5:amd64. 92s Preparing to unpack .../002-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package liblapack3:amd64. 92s Preparing to unpack .../003-liblapack3_3.12.1-7_amd64.deb ... 92s Unpacking liblapack3:amd64 (3.12.1-7) ... 92s Selecting previously unselected package python3-numpy. 92s Preparing to unpack .../004-python3-numpy_1%3a2.3.4+ds-3ubuntu1_amd64.deb ... 92s Unpacking python3-numpy (1:2.3.4+ds-3ubuntu1) ... 92s Selecting previously unselected package m4. 92s Preparing to unpack .../005-m4_1.4.20-2_amd64.deb ... 92s Unpacking m4 (1.4.20-2) ... 92s Selecting previously unselected package autoconf. 92s Preparing to unpack .../006-autoconf_2.72-3.1ubuntu1_all.deb ... 92s Unpacking autoconf (2.72-3.1ubuntu1) ... 92s Selecting previously unselected package autotools-dev. 92s Preparing to unpack .../007-autotools-dev_20240727.1_all.deb ... 92s Unpacking autotools-dev (20240727.1) ... 92s Selecting previously unselected package automake. 92s Preparing to unpack .../008-automake_1%3a1.18.1-2_all.deb ... 92s Unpacking automake (1:1.18.1-2) ... 92s Selecting previously unselected package autopoint. 92s Preparing to unpack .../009-autopoint_0.23.1-2build2_all.deb ... 92s Unpacking autopoint (0.23.1-2build2) ... 92s Selecting previously unselected package libisl23:amd64. 92s Preparing to unpack .../010-libisl23_0.27-1_amd64.deb ... 92s Unpacking libisl23:amd64 (0.27-1) ... 92s Selecting previously unselected package libmpc3:amd64. 92s Preparing to unpack .../011-libmpc3_1.3.1-2_amd64.deb ... 92s Unpacking libmpc3:amd64 (1.3.1-2) ... 92s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 92s Preparing to unpack .../012-cpp-15-x86-64-linux-gnu_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package cpp-15. 92s Preparing to unpack .../013-cpp-15_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking cpp-15 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package cpp-x86-64-linux-gnu. 92s Preparing to unpack .../014-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 92s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 92s Selecting previously unselected package cpp. 92s Preparing to unpack .../015-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 92s Unpacking cpp (4:15.2.0-4ubuntu1) ... 92s Selecting previously unselected package libcc1-0:amd64. 92s Preparing to unpack .../016-libcc1-0_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libcc1-0:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libgomp1:amd64. 92s Preparing to unpack .../017-libgomp1_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libgomp1:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libitm1:amd64. 92s Preparing to unpack .../018-libitm1_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libitm1:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libasan8:amd64. 92s Preparing to unpack .../019-libasan8_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libasan8:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package liblsan0:amd64. 92s Preparing to unpack .../020-liblsan0_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking liblsan0:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libtsan2:amd64. 92s Preparing to unpack .../021-libtsan2_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libtsan2:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libubsan1:amd64. 92s Preparing to unpack .../022-libubsan1_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libubsan1:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libhwasan0:amd64. 92s Preparing to unpack .../023-libhwasan0_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libhwasan0:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libquadmath0:amd64. 92s Preparing to unpack .../024-libquadmath0_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libquadmath0:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package libgcc-15-dev:amd64. 92s Preparing to unpack .../025-libgcc-15-dev_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking libgcc-15-dev:amd64 (15.2.0-7ubuntu1) ... 92s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 92s Preparing to unpack .../026-gcc-15-x86-64-linux-gnu_15.2.0-7ubuntu1_amd64.deb ... 92s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-7ubuntu1) ... 93s Selecting previously unselected package gcc-15. 93s Preparing to unpack .../027-gcc-15_15.2.0-7ubuntu1_amd64.deb ... 93s Unpacking gcc-15 (15.2.0-7ubuntu1) ... 93s Selecting previously unselected package gcc-x86-64-linux-gnu. 93s Preparing to unpack .../028-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 93s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 93s Selecting previously unselected package gcc. 93s Preparing to unpack .../029-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 93s Unpacking gcc (4:15.2.0-4ubuntu1) ... 93s Selecting previously unselected package libstdc++-15-dev:amd64. 93s Preparing to unpack .../030-libstdc++-15-dev_15.2.0-7ubuntu1_amd64.deb ... 93s Unpacking libstdc++-15-dev:amd64 (15.2.0-7ubuntu1) ... 93s Selecting previously unselected package g++-15-x86-64-linux-gnu. 93s Preparing to unpack .../031-g++-15-x86-64-linux-gnu_15.2.0-7ubuntu1_amd64.deb ... 93s Unpacking g++-15-x86-64-linux-gnu (15.2.0-7ubuntu1) ... 93s Selecting previously unselected package g++-15. 93s Preparing to unpack .../032-g++-15_15.2.0-7ubuntu1_amd64.deb ... 93s Unpacking g++-15 (15.2.0-7ubuntu1) ... 93s Selecting previously unselected package g++-x86-64-linux-gnu. 93s Preparing to unpack .../033-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 93s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 93s Selecting previously unselected package g++. 93s Preparing to unpack .../034-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 93s Unpacking g++ (4:15.2.0-4ubuntu1) ... 93s Selecting previously unselected package build-essential. 93s Preparing to unpack .../035-build-essential_12.12ubuntu1_amd64.deb ... 93s Unpacking build-essential (12.12ubuntu1) ... 93s Selecting previously unselected package cd-hit. 93s Preparing to unpack .../036-cd-hit_4.8.1-4_amd64.deb ... 93s Unpacking cd-hit (4.8.1-4) ... 93s Selecting previously unselected package libdebhelper-perl. 93s Preparing to unpack .../037-libdebhelper-perl_13.24.2ubuntu1_all.deb ... 93s Unpacking libdebhelper-perl (13.24.2ubuntu1) ... 93s Selecting previously unselected package libtool. 93s Preparing to unpack .../038-libtool_2.5.4-7_all.deb ... 93s Unpacking libtool (2.5.4-7) ... 93s Selecting previously unselected package dh-autoreconf. 93s Preparing to unpack .../039-dh-autoreconf_21_all.deb ... 93s Unpacking dh-autoreconf (21) ... 93s Selecting previously unselected package libarchive-zip-perl. 93s Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... 93s Unpacking libarchive-zip-perl (1.68-1) ... 93s Selecting previously unselected package libfile-stripnondeterminism-perl. 93s Preparing to unpack .../041-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... 93s Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... 93s Selecting previously unselected package dh-strip-nondeterminism. 93s Preparing to unpack .../042-dh-strip-nondeterminism_1.15.0-1_all.deb ... 93s Unpacking dh-strip-nondeterminism (1.15.0-1) ... 93s Selecting previously unselected package debugedit. 93s Preparing to unpack .../043-debugedit_1%3a5.2-3_amd64.deb ... 93s Unpacking debugedit (1:5.2-3) ... 93s Selecting previously unselected package dwz. 93s Preparing to unpack .../044-dwz_0.16-2_amd64.deb ... 93s Unpacking dwz (0.16-2) ... 93s Selecting previously unselected package gettext. 93s Preparing to unpack .../045-gettext_0.23.1-2build2_amd64.deb ... 93s Unpacking gettext (0.23.1-2build2) ... 93s Selecting previously unselected package intltool-debian. 93s Preparing to unpack .../046-intltool-debian_0.35.0+20060710.6_all.deb ... 93s Unpacking intltool-debian (0.35.0+20060710.6) ... 93s Selecting previously unselected package po-debconf. 93s Preparing to unpack .../047-po-debconf_1.0.21+nmu1_all.deb ... 93s Unpacking po-debconf (1.0.21+nmu1) ... 93s Selecting previously unselected package debhelper. 93s Preparing to unpack .../048-debhelper_13.24.2ubuntu1_all.deb ... 93s Unpacking debhelper (13.24.2ubuntu1) ... 93s Selecting previously unselected package dh-python. 93s Preparing to unpack .../049-dh-python_6.20250414_all.deb ... 93s Unpacking dh-python (6.20250414) ... 93s Selecting previously unselected package libfontenc1:amd64. 93s Preparing to unpack .../050-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 93s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 93s Selecting previously unselected package x11-common. 93s Preparing to unpack .../051-x11-common_1%3a7.7+24ubuntu1_all.deb ... 93s Unpacking x11-common (1:7.7+24ubuntu1) ... 93s Selecting previously unselected package xfonts-encodings. 93s Preparing to unpack .../052-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 93s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 93s Selecting previously unselected package xfonts-utils. 93s Preparing to unpack .../053-xfonts-utils_1%3a7.7+7_amd64.deb ... 93s Unpacking xfonts-utils (1:7.7+7) ... 93s Selecting previously unselected package fonts-urw-base35. 93s Preparing to unpack .../054-fonts-urw-base35_20200910-8_all.deb ... 93s Unpacking fonts-urw-base35 (20200910-8) ... 93s Selecting previously unselected package fontconfig-config. 93s Preparing to unpack .../055-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 94s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 94s Selecting previously unselected package libfontconfig1:amd64. 94s Preparing to unpack .../056-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 94s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 94s Selecting previously unselected package libpixman-1-0:amd64. 94s Preparing to unpack .../057-libpixman-1-0_0.46.4-1_amd64.deb ... 94s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 94s Selecting previously unselected package libxcb-render0:amd64. 94s Preparing to unpack .../058-libxcb-render0_1.17.0-2build1_amd64.deb ... 94s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 94s Selecting previously unselected package libxcb-shm0:amd64. 94s Preparing to unpack .../059-libxcb-shm0_1.17.0-2build1_amd64.deb ... 94s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 94s Selecting previously unselected package libxrender1:amd64. 94s Preparing to unpack .../060-libxrender1_1%3a0.9.12-1_amd64.deb ... 94s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 94s Selecting previously unselected package libcairo2:amd64. 94s Preparing to unpack .../061-libcairo2_1.18.4-1build1_amd64.deb ... 94s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 94s Selecting previously unselected package libdeflate0:amd64. 94s Preparing to unpack .../062-libdeflate0_1.23-2_amd64.deb ... 94s Unpacking libdeflate0:amd64 (1.23-2) ... 94s Selecting previously unselected package libgraphite2-3:amd64. 94s Preparing to unpack .../063-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 94s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 94s Selecting previously unselected package libharfbuzz0b:amd64. 94s Preparing to unpack .../064-libharfbuzz0b_12.1.0-1_amd64.deb ... 94s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 94s Selecting previously unselected package libimagequant0:amd64. 94s Preparing to unpack .../065-libimagequant0_2.18.0-1build1_amd64.deb ... 94s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 94s Selecting previously unselected package libjpeg-turbo8:amd64. 94s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 94s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 94s Selecting previously unselected package libjpeg8:amd64. 94s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 94s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 94s Selecting previously unselected package liblcms2-2:amd64. 94s Preparing to unpack .../068-liblcms2-2_2.16-2_amd64.deb ... 94s Unpacking liblcms2-2:amd64 (2.16-2) ... 94s Selecting previously unselected package liblerc4:amd64. 94s Preparing to unpack .../069-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 94s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 94s Selecting previously unselected package libmbedcrypto16:amd64. 94s Preparing to unpack .../070-libmbedcrypto16_3.6.2-3ubuntu1_amd64.deb ... 94s Unpacking libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 94s Selecting previously unselected package libmbedx509-7:amd64. 94s Preparing to unpack .../071-libmbedx509-7_3.6.2-3ubuntu1_amd64.deb ... 94s Unpacking libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 94s Selecting previously unselected package libmbedtls21:amd64. 94s Preparing to unpack .../072-libmbedtls21_3.6.2-3ubuntu1_amd64.deb ... 94s Unpacking libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 94s Selecting previously unselected package ncbi-vdb-data. 94s Preparing to unpack .../073-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... 94s Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... 94s Selecting previously unselected package libncbi-vdb3:amd64. 94s Preparing to unpack .../074-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... 94s Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... 94s Selecting previously unselected package libraqm0:amd64. 94s Preparing to unpack .../075-libraqm0_0.10.3-1_amd64.deb ... 94s Unpacking libraqm0:amd64 (0.10.3-1) ... 94s Selecting previously unselected package libsharpyuv0:amd64. 94s Preparing to unpack .../076-libsharpyuv0_1.5.0-0.1_amd64.deb ... 94s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 94s Selecting previously unselected package libjbig0:amd64. 94s Preparing to unpack .../077-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 94s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 94s Selecting previously unselected package libwebp7:amd64. 94s Preparing to unpack .../078-libwebp7_1.5.0-0.1_amd64.deb ... 94s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 94s Selecting previously unselected package libtiff6:amd64. 94s Preparing to unpack .../079-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 94s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 94s Selecting previously unselected package libwebpdemux2:amd64. 94s Preparing to unpack .../080-libwebpdemux2_1.5.0-0.1_amd64.deb ... 94s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 94s Selecting previously unselected package libwebpmux3:amd64. 94s Preparing to unpack .../081-libwebpmux3_1.5.0-0.1_amd64.deb ... 94s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 94s Selecting previously unselected package ncbi-data. 94s Preparing to unpack .../082-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... 94s Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... 94s Selecting previously unselected package ncbi-blast+. 94s Preparing to unpack .../083-ncbi-blast+_2.16.0+ds-7_amd64.deb ... 94s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 94s Selecting previously unselected package python3-charset-normalizer. 94s Preparing to unpack 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gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 100s Setting up po-debconf (1.0.21+nmu1) ... 100s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-1ubuntu1) ... 100s Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... 100s Setting up fonts-urw-base35 (20200910-8) ... 100s Setting up ncbi-blast+ (2.16.0+ds-7) ... 100s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 100s Setting up gcc-15 (15.2.0-7ubuntu1) ... 100s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 103s Setting up cpp (4:15.2.0-4ubuntu1) ... 103s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 103s Setting up g++-15 (15.2.0-7ubuntu1) ... 103s Setting up libtool (2.5.4-7) ... 103s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 103s Setting up gcc (4:15.2.0-4ubuntu1) ... 103s Setting up dh-autoreconf (21) ... 103s Setting up g++ (4:15.2.0-4ubuntu1) ... 103s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 103s Setting up build-essential (12.12ubuntu1) ... 104s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 104s Setting up debhelper (13.24.2ubuntu1) ... 104s Setting up libcairo2:amd64 (1.18.4-1build1) ... 104s Setting up python3-cairo (1.27.0-2build1) ... 104s Setting up pybuild-plugin-autopkgtest (6.20250414) ... 104s Setting up python3-rlpycairo (0.3.0-4) ... 104s Setting up python3-reportlab (4.4.4-2) ... 104s Processing triggers for libc-bin (2.42-2ubuntu2) ... 104s Processing triggers for man-db (2.13.1-1) ... 105s Processing triggers for install-info (7.2-5) ... 105s Processing triggers for sgml-base (1.31+nmu1) ... 105s Setting up w3c-sgml-lib (1.3-3) ... 124s Setting up python3-biopython (1.85+dfsg-4) ... 125s Setting up python3-presto (0.7.5-1) ... 125s Setting up presto (0.7.5-1) ... 126s autopkgtest [05:51:27]: test pybuild-autopkgtest: pybuild-autopkgtest 126s autopkgtest [05:51:27]: test pybuild-autopkgtest: [----------------------- 126s pybuild-autopkgtest 126s I: pybuild pybuild:308: cp -r /tmp/autopkgtest.JvVfM3/build.pfh/src/bin /tmp/autopkgtest.JvVfM3/autopkgtest_tmp/build; rm /tmp/autopkgtest.JvVfM3/build.pfh/src/tests/test_ClusterSets.py || echo "Test file already removed or moved"; 126s I: pybuild base:311: cd /tmp/autopkgtest.JvVfM3/autopkgtest_tmp/build; python3.13 -m unittest discover -v 126s 126s ---------------------------------------------------------------------- 126s Ran 0 tests in 0.000s 126s 126s NO TESTS RAN 127s autopkgtest [05:51:28]: test pybuild-autopkgtest: -----------------------] 127s pybuild-autopkgtest PASS 127s autopkgtest [05:51:28]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 127s autopkgtest [05:51:28]: @@@@@@@@@@@@@@@@@@@@ summary 127s pybuild-autopkgtest PASS