0s autopkgtest [06:02:06]: starting date and time: 2025-10-24 06:02:06+0000 0s autopkgtest [06:02:06]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [06:02:06]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.twwdlex0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade pdb-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-5.secgroup --name adt-resolute-amd64-pdb-tools-20251024-060206-juju-7f2275-prod-proposed-migration-environment-20-faeac250-3526-4fae-ac2a-bf33c7325adf --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-pdb-tools-20251024-060206-juju-7f2275-prod-proposed-migration-environment-20-faeac250-3526-4fae-ac2a-bf33c7325adf from image adt/ubuntu-resolute-amd64-server-20251024.img (UUID 310022dd-8dd9-48c7-a816-c2d8419ef402)... 32s autopkgtest [06:02:38]: testbed dpkg architecture: amd64 32s autopkgtest [06:02:38]: testbed apt version: 3.1.8ubuntu1 33s autopkgtest [06:02:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [06:02:39]: testbed release detected to be: None 33s autopkgtest [06:02:39]: updating testbed package index (apt update) 34s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 34s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 34s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 34s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 34s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [533 kB] 34s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [61.6 kB] 34s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 34s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 34s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [97.2 kB] 34s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [147 kB] 34s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3040 B] 34s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 34s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 34s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 34s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [145 kB] 34s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [385 kB] 34s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [10.8 kB] 34s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 34s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 34s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [492 B] 35s Fetched 1532 kB in 1s (2173 kB/s) 35s Reading package lists... 36s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 36s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 36s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 36s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 36s Reading package lists... 36s Reading package lists... 37s Building dependency tree... 37s Reading state information... 37s Calculating upgrade... 37s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 37s autopkgtest [06:02:43]: upgrading testbed (apt dist-upgrade and autopurge) 37s Reading package lists... 37s Building dependency tree... 37s Reading state information... 37s Calculating upgrade... 37s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 37s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Solving dependencies... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 40s autopkgtest [06:02:46]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 40s autopkgtest [06:02:46]: @@@@@@@@@@@@@@@@@@@@ apt-source pdb-tools 41s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pdb-tools 2.5.1-2 (dsc) [2170 B] 41s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pdb-tools 2.5.1-2 (tar) [182 kB] 41s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pdb-tools 2.5.1-2 (diff) [3404 B] 41s gpgv: Signature made Wed Sep 25 10:45:15 2024 UTC 41s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 41s gpgv: issuer "merkys@debian.org" 41s gpgv: Can't check signature: No public key 41s dpkg-source: warning: cannot verify inline signature for ./pdb-tools_2.5.1-2.dsc: no acceptable signature found 42s autopkgtest [06:02:48]: testing package pdb-tools version 2.5.1-2 42s autopkgtest [06:02:48]: build not needed 42s autopkgtest [06:02:48]: test command1: preparing testbed 42s Reading package lists... 42s Building dependency tree... 42s Reading state information... 42s Solving dependencies... 43s The following NEW packages will be installed: 43s pdb-tools python3-iniconfig python3-packaging python3-pdbtools 43s python3-pluggy python3-pytest 43s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 43s Need to get 409 kB of archives. 43s After this operation, 2177 kB of additional disk space will be used. 43s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pdbtools all 2.5.1-2 [32.6 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 pdb-tools all 2.5.1-2 [28.1 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 43s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 43s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 43s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pytest all 8.4.2-1 [268 kB] 43s Fetched 409 kB in 0s (3226 kB/s) 43s Selecting previously unselected package python3-pdbtools. 43s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78459 files and directories currently installed.) 43s Preparing to unpack .../0-python3-pdbtools_2.5.1-2_all.deb ... 43s Unpacking python3-pdbtools (2.5.1-2) ... 43s Selecting previously unselected package pdb-tools. 43s Preparing to unpack .../1-pdb-tools_2.5.1-2_all.deb ... 43s Unpacking pdb-tools (2.5.1-2) ... 43s Selecting previously unselected package python3-iniconfig. 43s Preparing to unpack .../2-python3-iniconfig_1.1.1-2_all.deb ... 43s Unpacking python3-iniconfig (1.1.1-2) ... 43s Selecting previously unselected package python3-packaging. 43s Preparing to unpack .../3-python3-packaging_25.0-1_all.deb ... 43s Unpacking python3-packaging (25.0-1) ... 43s Selecting previously unselected package python3-pluggy. 43s Preparing to unpack .../4-python3-pluggy_1.6.0-1_all.deb ... 43s Unpacking python3-pluggy (1.6.0-1) ... 43s Selecting previously unselected package python3-pytest. 43s Preparing to unpack .../5-python3-pytest_8.4.2-1_all.deb ... 43s Unpacking python3-pytest (8.4.2-1) ... 43s Setting up python3-iniconfig (1.1.1-2) ... 43s Setting up python3-pdbtools (2.5.1-2) ... 43s Setting up python3-packaging (25.0-1) ... 43s Setting up python3-pluggy (1.6.0-1) ... 43s Setting up pdb-tools (2.5.1-2) ... 43s Setting up python3-pytest (8.4.2-1) ... 44s Processing triggers for man-db (2.13.1-1) ... 45s autopkgtest [06:02:51]: test command1: PYTHONPATH=tests SKIP_TTY_TESTS=1 pytest-3 45s autopkgtest [06:02:51]: test command1: [----------------------- 45s ============================= test session starts ============================== 45s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 45s rootdir: /tmp/autopkgtest.i1zWUO/build.wtv/src 45s plugins: typeguard-4.4.2 45s collected 362 items 45s 45s tests/test_pdb_b.py .s.s... [ 1%] 45s tests/test_pdb_chain.py .s.s... [ 3%] 45s tests/test_pdb_chainbows.py ..s. [ 4%] 45s tests/test_pdb_chainxseg.py ..s. [ 6%] 45s tests/test_pdb_chkensemble.py .....s.. [ 8%] 45s tests/test_pdb_delchain.py .s.s.... [ 10%] 45s tests/test_pdb_delelem.py .s.s.... [ 12%] 45s tests/test_pdb_delhetatm.py ..s. [ 13%] 45s tests/test_pdb_delinsertion.py .s..... [ 15%] 45s tests/test_pdb_delres.py s.s.......... [ 19%] 45s tests/test_pdb_delresname.py .s.s.... [ 21%] 45s tests/test_pdb_element.py ..s. [ 22%] 45s tests/test_pdb_fixinsert.py .s.s.... [ 24%] 45s tests/test_pdb_fromcif.py ..s. [ 25%] 45s tests/test_pdb_gap.py ..s. [ 27%] 45s tests/test_pdb_head.py s.s... [ 28%] 45s tests/test_pdb_intersect.py ..s [ 29%] 45s tests/test_pdb_keepcoord.py ..s. [ 30%] 45s tests/test_pdb_merge.py ..s [ 31%] 45s tests/test_pdb_mkensemble.py ...s [ 32%] 45s tests/test_pdb_occ.py .s.s... [ 34%] 45s tests/test_pdb_reatom.py .s.s..... [ 37%] 45s tests/test_pdb_reres.py .s.s....... [ 40%] 45s tests/test_pdb_rplchain.py s.s..... [ 42%] 45s tests/test_pdb_rplresname.py s.s..... [ 44%] 45s tests/test_pdb_seg.py .s.s... [ 46%] 45s tests/test_pdb_segxchain.py ..s. [ 47%] 45s tests/test_pdb_selaltloc.py ............s....s..................... [ 58%] 45s tests/test_pdb_selatom.py s.s..... [ 60%] 45s tests/test_pdb_selchain.py s.s........ [ 63%] 45s tests/test_pdb_selelem.py s.s..... [ 65%] 45s tests/test_pdb_selhetatm.py ..s. [ 66%] 45s tests/test_pdb_selmodel.py s.s..... [ 69%] 45s tests/test_pdb_selres.py s.s........... [ 72%] 45s tests/test_pdb_selresname.py .s.s.... [ 75%] 45s tests/test_pdb_selseg.py s.s..... [ 77%] 45s tests/test_pdb_shiftres.py .s.s..... [ 79%] 45s tests/test_pdb_sort.py ..s.. [ 81%] 45s tests/test_pdb_splitchain.py .s.s.... [ 83%] 45s tests/test_pdb_splitmodel.py .s.s.... [ 85%] 45s tests/test_pdb_splitseg.py .s.s.... [ 87%] 45s tests/test_pdb_tidy.py .........s.. [ 91%] 45s tests/test_pdb_tocif.py .s....... [ 93%] 45s tests/test_pdb_tofasta.py ...s.. [ 95%] 45s tests/test_pdb_uniqname.py ..s.s. [ 96%] 45s tests/test_pdb_validate.py .s... [ 98%] 45s tests/test_pdb_wc.py ..s... [100%] 45s 45s ======================= 288 passed, 74 skipped in 0.33s ======================== 46s autopkgtest [06:02:52]: test command1: -----------------------] 46s command1 PASS 46s autopkgtest [06:02:52]: test command1: - - - - - - - - - - results - - - - - - - - - - 46s autopkgtest [06:02:52]: test autodep8-python3: preparing testbed 53s Creating nova instance adt-resolute-amd64-pdb-tools-20251024-060206-juju-7f2275-prod-proposed-migration-environment-20-faeac250-3526-4fae-ac2a-bf33c7325adf from image adt/ubuntu-resolute-amd64-server-20251024.img (UUID 310022dd-8dd9-48c7-a816-c2d8419ef402)... 84s autopkgtest [06:03:30]: testbed dpkg architecture: amd64 84s autopkgtest [06:03:30]: testbed apt version: 3.1.8ubuntu1 85s autopkgtest [06:03:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 85s autopkgtest [06:03:31]: testbed release detected to be: resolute 85s autopkgtest [06:03:31]: updating testbed package index (apt update) 86s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 86s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 86s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 86s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 86s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [533 kB] 86s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [61.6 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 86s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 86s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [147 kB] 86s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [97.2 kB] 86s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3040 B] 86s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 86s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 86s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 86s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [385 kB] 86s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [145 kB] 86s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [10.8 kB] 86s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 86s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 87s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [492 B] 87s Fetched 1532 kB in 1s (1685 kB/s) 88s Reading package lists... 88s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 88s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 89s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 89s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s autopkgtest [06:03:35]: upgrading testbed (apt dist-upgrade and autopurge) 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Solving dependencies... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Solving dependencies... 93s The following NEW packages will be installed: 93s python3-all python3-pdbtools 93s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 33.4 kB of archives. 93s After this operation, 326 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.7-1 [884 B] 93s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pdbtools all 2.5.1-2 [32.6 kB] 93s Fetched 33.4 kB in 0s (0 B/s) 93s Selecting previously unselected package python3-all. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78459 files and directories currently installed.) 93s Preparing to unpack .../python3-all_3.13.7-1_amd64.deb ... 93s Unpacking python3-all (3.13.7-1) ... 93s Selecting previously unselected package python3-pdbtools. 93s Preparing to unpack .../python3-pdbtools_2.5.1-2_all.deb ... 93s Unpacking python3-pdbtools (2.5.1-2) ... 93s Setting up python3-pdbtools (2.5.1-2) ... 93s Setting up python3-all (3.13.7-1) ... 95s autopkgtest [06:03:41]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pdbtools; print(pdbtools)" ; done 95s autopkgtest [06:03:41]: test autodep8-python3: [----------------------- 95s Testing with python3.13: 95s 95s autopkgtest [06:03:41]: test autodep8-python3: -----------------------] 95s autopkgtest [06:03:41]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 95s autodep8-python3 PASS (superficial) 96s autopkgtest [06:03:42]: @@@@@@@@@@@@@@@@@@@@ summary 96s command1 PASS 96s autodep8-python3 PASS (superficial)