0s autopkgtest [21:14:24]: starting date and time: 2026-02-06 21:14:24+0000 0s autopkgtest [21:14:24]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [21:14:24]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zumcc3i1/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pbdagcon --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-9.secgroup --name adt-resolute-amd64-pbdagcon-20260206-211424-juju-7f2275-prod-proposed-migration-environment-20-7e7396f8-bb43-46a1-9baf-db8dad0f4297 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-pbdagcon-20260206-211424-juju-7f2275-prod-proposed-migration-environment-20-7e7396f8-bb43-46a1-9baf-db8dad0f4297 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 89s autopkgtest [21:15:53]: testbed dpkg architecture: amd64 89s autopkgtest [21:15:53]: testbed apt version: 3.1.14 89s autopkgtest [21:15:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s autopkgtest [21:15:53]: testbed release detected to be: None 90s autopkgtest [21:15:54]: updating testbed package index (apt update) 90s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 90s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 90s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1547 kB] 90s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 90s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [201 kB] 90s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.7 kB] 90s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB] 91s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [189 kB] 91s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 91s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 91s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 91s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 91s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 91s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1433 kB] 91s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 91s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 91s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 91s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 91s Fetched 4516 kB in 1s (4705 kB/s) 92s Reading package lists... 93s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 93s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 93s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 93s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 93s Reading package lists... 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 94s The following packages will be upgraded: 94s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 94s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 94s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 94s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 94s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 94s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 14.4 MB of archives. 94s After this operation, 270 kB disk space will be freed. 94s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 94s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 94s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 94s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 94s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 94s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 94s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 94s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 94s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 94s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 94s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 94s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 94s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 94s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 94s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 95s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 95s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 95s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 95s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 95s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 95s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 95s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 95s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 95s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 95s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 95s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 95s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 95s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 95s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 95s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 95s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 96s dpkg-preconfigure: unable to re-open stdin: No such file or directory 96s Fetched 14.4 MB in 2s (8932 kB/s) 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 96s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 96s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 96s Setting up findutils (4.10.0-3build2) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 96s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 96s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 96s Setting up sed (4.9-2build3) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 96s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 96s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 96s Setting up tar (1.35+dfsg-3.1build2) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 96s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 96s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 96s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 96s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 96s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 96s Setting up libc6:amd64 (2.42-2ubuntu5) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 97s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 97s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 97s Setting up libc-bin (2.42-2ubuntu5) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 97s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 97s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 97s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 97s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 97s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 97s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 97s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 97s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 97s Unpacking apt (3.1.15) over (3.1.14) ... 97s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 97s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 97s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 97s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 97s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 97s Unpacking less (668-1build1) over (668-1) ... 97s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 97s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 97s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 97s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 97s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 97s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 97s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 98s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 98s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 98s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 98s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 98s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 98s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 98s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 98s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 98s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 98s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 98s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 98s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 98s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 98s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 98s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 98s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 98s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 98s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 98s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 98s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 98s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 98s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 98s Unpacking patch (2.8-2build1) over (2.8-2) ... 98s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 98s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 98s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 98s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 98s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 98s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 98s Setting up libnpth0t64:amd64 (1.8-3build1) ... 98s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 98s Setting up libgpm2:amd64 (1.20.7-12build1) ... 98s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 98s Setting up libsensors-config (1:3.6.2-2build1) ... 98s Setting up less (668-1build1) ... 98s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 98s amd64-microcode: microcode will be updated at next boot 98s Setting up locales (2.42-2ubuntu5) ... 99s Generating locales (this might take a while)... 100s en_US.UTF-8... done 100s Generation complete. 100s Setting up pollinate (4.33-4ubuntu5) ... 110s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 110s Setting up patch (2.8-2build1) ... 110s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 110s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 110s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 110s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 110s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 110s Setting up mawk (1.3.4.20260129-1) ... 110s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 110s Setting up libdrm-common (2.4.131-1) ... 110s Setting up python3-referencing (0.36.2-1ubuntu2) ... 110s Setting up apt (3.1.15) ... 111s Setting up python3-markdown-it (3.0.0-3build1) ... 111s Setting up libdrm2:amd64 (2.4.131-1) ... 111s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 111s Processing triggers for libc-bin (2.42-2ubuntu5) ... 111s Processing triggers for systemd (259-1ubuntu3) ... 112s Processing triggers for man-db (2.13.1-1) ... 113s Processing triggers for install-info (7.2-5) ... 113s Processing triggers for initramfs-tools (0.150ubuntu7) ... 113s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 118s autopkgtest [21:16:22]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [21:16:24]: rebooting testbed after setup commands that affected boot 149s autopkgtest [21:16:53]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 152s autopkgtest [21:16:56]: @@@@@@@@@@@@@@@@@@@@ apt-source pbdagcon 153s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pbdagcon 0.3+git20180411.c14c422+dfsg-9build1 (dsc) [2396 B] 153s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pbdagcon 0.3+git20180411.c14c422+dfsg-9build1 (tar) [79.8 kB] 153s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pbdagcon 0.3+git20180411.c14c422+dfsg-9build1 (diff) [58.2 kB] 153s gpgv: Signature made Tue Jan 27 09:35:53 2026 UTC 153s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./pbdagcon_0.3+git20180411.c14c422+dfsg-9build1.dsc: no acceptable signature found 153s autopkgtest [21:16:57]: testing package pbdagcon version 0.3+git20180411.c14c422+dfsg-9build1 153s autopkgtest [21:16:57]: build not needed 154s autopkgtest [21:16:58]: test run-unit-test: preparing testbed 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Solving dependencies... 154s The following NEW packages will be installed: 154s blasr daligner dazzdb libblasr5.3.5 libdeflate0 libhdf5-310 libhdf5-cpp-310 154s libhts3t64 libhtscodecs2 libpbbam2.4.0 libpbcopper2.3.0 libpbseq libsz2 154s pbdagcon 154s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 5545 kB of archives. 154s After this operation, 16.4 MB of additional disk space will be used. 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-cpp-310 amd64 1.14.6+repack-2 [125 kB] 154s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 154s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2build1 [108 kB] 154s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 155s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpbcopper2.3.0 amd64 2.3.0+dfsg-4 [574 kB] 155s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpbbam2.4.0 amd64 2.4.0+dfsg-1build2 [679 kB] 155s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblasr5.3.5 amd64 5.3.5+dfsg-11 [1275 kB] 155s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpbseq amd64 5.3.5+dfsg-11 [3056 B] 155s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 blasr amd64 5.3.5+dfsg-8 [241 kB] 155s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 daligner amd64 1.0+git20240119.335105d-3build1 [163 kB] 155s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 dazzdb amd64 1.0+git20250217.a3eefd4-1build1 [152 kB] 155s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 pbdagcon amd64 0.3+git20180411.c14c422+dfsg-9build1 [263 kB] 155s Fetched 5545 kB in 1s (7852 kB/s) 155s Selecting previously unselected package libsz2:amd64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 155s Preparing to unpack .../00-libsz2_1.1.5-1_amd64.deb ... 155s Unpacking libsz2:amd64 (1.1.5-1) ... 155s Selecting previously unselected package libhdf5-310:amd64. 155s Preparing to unpack .../01-libhdf5-310_1.14.6+repack-2_amd64.deb ... 155s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 155s Selecting previously unselected package libhdf5-cpp-310:amd64. 155s Preparing to unpack .../02-libhdf5-cpp-310_1.14.6+repack-2_amd64.deb ... 155s Unpacking libhdf5-cpp-310:amd64 (1.14.6+repack-2) ... 155s Selecting previously unselected package libdeflate0:amd64. 155s Preparing to unpack .../03-libdeflate0_1.23-2_amd64.deb ... 155s Unpacking libdeflate0:amd64 (1.23-2) ... 155s Selecting previously unselected package libhtscodecs2:amd64. 155s Preparing to unpack .../04-libhtscodecs2_1.6.1-2build1_amd64.deb ... 155s Unpacking libhtscodecs2:amd64 (1.6.1-2build1) ... 155s Selecting previously unselected package libhts3t64:amd64. 155s Preparing to unpack .../05-libhts3t64_1.22.1+ds2-1_amd64.deb ... 155s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 155s Selecting previously unselected package libpbcopper2.3.0:amd64. 155s Preparing to unpack .../06-libpbcopper2.3.0_2.3.0+dfsg-4_amd64.deb ... 155s Unpacking libpbcopper2.3.0:amd64 (2.3.0+dfsg-4) ... 155s Selecting previously unselected package libpbbam2.4.0:amd64. 155s Preparing to unpack .../07-libpbbam2.4.0_2.4.0+dfsg-1build2_amd64.deb ... 155s Unpacking libpbbam2.4.0:amd64 (2.4.0+dfsg-1build2) ... 155s Selecting previously unselected package libblasr5.3.5:amd64. 155s Preparing to unpack .../08-libblasr5.3.5_5.3.5+dfsg-11_amd64.deb ... 155s Unpacking libblasr5.3.5:amd64 (5.3.5+dfsg-11) ... 155s Selecting previously unselected package libpbseq:amd64. 155s Preparing to unpack .../09-libpbseq_5.3.5+dfsg-11_amd64.deb ... 155s Unpacking libpbseq:amd64 (5.3.5+dfsg-11) ... 155s Selecting previously unselected package blasr. 155s Preparing to unpack .../10-blasr_5.3.5+dfsg-8_amd64.deb ... 155s Unpacking blasr (5.3.5+dfsg-8) ... 155s Selecting previously unselected package daligner. 155s Preparing to unpack .../11-daligner_1.0+git20240119.335105d-3build1_amd64.deb ... 155s Unpacking daligner (1.0+git20240119.335105d-3build1) ... 155s Selecting previously unselected package dazzdb. 155s Preparing to unpack .../12-dazzdb_1.0+git20250217.a3eefd4-1build1_amd64.deb ... 155s Unpacking dazzdb (1.0+git20250217.a3eefd4-1build1) ... 155s Selecting previously unselected package pbdagcon. 155s Preparing to unpack .../13-pbdagcon_0.3+git20180411.c14c422+dfsg-9build1_amd64.deb ... 155s Unpacking pbdagcon (0.3+git20180411.c14c422+dfsg-9build1) ... 155s Setting up libhtscodecs2:amd64 (1.6.1-2build1) ... 155s Setting up libdeflate0:amd64 (1.23-2) ... 155s Setting up dazzdb (1.0+git20250217.a3eefd4-1build1) ... 155s Setting up daligner (1.0+git20240119.335105d-3build1) ... 155s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 155s Setting up libsz2:amd64 (1.1.5-1) ... 155s Setting up libpbcopper2.3.0:amd64 (2.3.0+dfsg-4) ... 155s Setting up libpbbam2.4.0:amd64 (2.4.0+dfsg-1build2) ... 155s Setting up libhdf5-310:amd64 (1.14.6+repack-2) ... 155s Setting up libhdf5-cpp-310:amd64 (1.14.6+repack-2) ... 155s Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-11) ... 155s Setting up libpbseq:amd64 (5.3.5+dfsg-11) ... 155s Setting up blasr (5.3.5+dfsg-8) ... 155s Setting up pbdagcon (0.3+git20180411.c14c422+dfsg-9build1) ... 155s Processing triggers for man-db (2.13.1-1) ... 156s Processing triggers for libc-bin (2.42-2ubuntu5) ... 157s autopkgtest [21:17:01]: test run-unit-test: [----------------------- 157s Test 1 157s [INFO] 2026-02-06T21:17:00 [blasr] started. 157s [INFO] 2026-02-06T21:17:00 [blasr] ended. 157s 2026-02-06 21:17:00,656 INFO [default] Multi-threaded. Input: mapped.m5, Threads: 4 157s 2026-02-06 21:17:00,658 DEBUG [Reader] [ubuntu@unknown-host] [FUNCTION] [FILE:0] Consensus candidate: random 157s 2026-02-06 21:17:00,658 INFO [Consensus] Consensus calling: random Alignments: 21 157s consensus.fasta: OK 157s mapped.m5: OK 157s queries.fasta: OK 157s target.dam: OK 157s target.fasta: OK 157s Passed 157s Test 2 157s You are about to overwrite the current partition settings. This 157s will invalidate any tracks, overlaps, and other derivative files. 157s Are you sure you want to proceed? [Y/N] # Daligner jobs (2) 157s daligner -t5 -mdust G.1 G.@1-1 157s daligner -t5 -mdust G.2 G.@1-2 157s # Check initial .las files jobs (2) (optional but recommended) 157s LAcheck -vS G G.1.G.@ 157s G.1.G.1: 190 all OK 157s G.1.G.2: 173 all OK 157s LAcheck -vS G G.2.G.@ 157s G.2.G.1: 173 all OK 157s G.2.G.2: 140 all OK 157s G.1: 363 all OK 157s # Merge jobs (2) 157s LAmerge G.1 G.1.G.@ && LAcheck -vS G G.1 157s LAmerge G.2 G.2.G.@ && LAcheck -vS G G.2 157s G.2: 313 all OK 157s # Remove block .las files (optional) 157s rm G.1.G.*.las 157s rm G.2.G.*.las 157s 2026-02-06 21:17:00,797 INFO [default] Initializing alignment provider 157s 2026-02-06 21:17:00,802 INFO [Consensus] (0) calling: 1 Alignments: 26 157s 2026-02-06 21:17:00,812 INFO [Consensus] (1) calling: 2 Alignments: 27 157s 2026-02-06 21:17:00,823 INFO [Consensus] (2) calling: 3 Alignments: 22 157s 2026-02-06 21:17:00,833 INFO [Consensus] (3) calling: 4 Alignments: 20 157s 2026-02-06 21:17:00,861 INFO [Consensus] (0) calling: 5 Alignments: 27 157s 2026-02-06 21:17:00,921 INFO [Consensus] (3) calling: 6 Alignments: 23 157s 2026-02-06 21:17:01,009 INFO [Consensus] (2) calling: 7 Alignments: 22 157s 2026-02-06 21:17:01,019 INFO [Consensus] (1) calling: 9 Alignments: 27 157s 2026-02-06 21:17:01,021 INFO [Consensus] (0) calling: 8 Alignments: 19 157s 2026-02-06 21:17:01,062 INFO [Consensus] (3) calling: 10 Alignments: 27 157s 2026-02-06 21:17:01,089 INFO [Consensus] (0) calling: 11 Alignments: 26 157s 2026-02-06 21:17:01,111 INFO [Consensus] (2) calling: 12 Alignments: 21 157s 2026-02-06 21:17:01,136 INFO [Consensus] (1) calling: 13 Alignments: 27 157s 2026-02-06 21:17:01,181 INFO [Consensus] (3) calling: 14 Alignments: 22 157s 2026-02-06 21:17:01,191 INFO [Consensus] (2) ending ... 157s 2026-02-06 21:17:01,194 INFO [Consensus] (0) calling: 15 Alignments: 27 158s 2026-02-06 21:17:01,263 INFO [Consensus] (0) ending ... 158s 2026-02-06 21:17:01,266 INFO [Consensus] (3) ending ... 158s 2026-02-06 21:17:01,275 INFO [Consensus] (1) ending ... 158s Passed 158s autopkgtest [21:17:02]: test run-unit-test: -----------------------] 158s autopkgtest [21:17:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 158s run-unit-test PASS 159s autopkgtest [21:17:02]: @@@@@@@@@@@@@@@@@@@@ summary 159s run-unit-test PASS