0s autopkgtest [19:48:27]: starting date and time: 2025-11-15 19:48:27+0000 0s autopkgtest [19:48:27]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [19:48:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f0zhk7p9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:requests --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=requests/2.32.5+dfsg-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-1.secgroup --name adt-resolute-amd64-multiqc-20251115-194827-juju-7f2275-prod-proposed-migration-environment-2-ca2c2d3f-dd67-4266-93b2-a3f185f88477 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-multiqc-20251115-194827-juju-7f2275-prod-proposed-migration-environment-2-ca2c2d3f-dd67-4266-93b2-a3f185f88477 from image adt/ubuntu-resolute-amd64-server-20251115.img (UUID defe59a7-3f6c-4c3e-b6a5-c1b00ec74db3)... 48s autopkgtest [19:49:15]: testbed dpkg architecture: amd64 48s autopkgtest [19:49:15]: testbed apt version: 3.1.11 48s autopkgtest [19:49:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [19:49:15]: testbed release detected to be: None 49s autopkgtest [19:49:16]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 49s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 49s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [78.5 kB] 49s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [821 kB] 50s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 50s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 50s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [154 kB] 50s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [115 kB] 50s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3108 B] 50s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 50s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 50s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 50s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [272 kB] 50s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [581 kB] 50s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [17.0 kB] 50s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [12.9 kB] 50s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5984 B] 50s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 2251 kB in 1s (2146 kB/s) 52s Reading package lists... 53s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 53s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Reading package lists... 53s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s The following packages will be upgraded: 54s python3-requests python3-rpds-py 54s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 420 kB of archives. 54s After this operation, 843 kB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-requests all 2.32.5+dfsg-1ubuntu1 [53.1 kB] 54s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-rpds-py amd64 0.27.1-2ubuntu1 [366 kB] 54s dpkg-preconfigure: unable to re-open stdin: No such file or directory 54s Fetched 420 kB in 0s (25.8 MB/s) 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83371 files and directories currently installed.) 54s Preparing to unpack .../python3-requests_2.32.5+dfsg-1ubuntu1_all.deb ... 54s Unpacking python3-requests (2.32.5+dfsg-1ubuntu1) over (2.32.3+dfsg-5ubuntu2) ... 54s Preparing to unpack .../python3-rpds-py_0.27.1-2ubuntu1_amd64.deb ... 54s Unpacking python3-rpds-py (0.27.1-2ubuntu1) over (0.21.0-2ubuntu2) ... 54s Setting up python3-requests (2.32.5+dfsg-1ubuntu1) ... 54s Setting up python3-rpds-py (0.27.1-2ubuntu1) ... 55s autopkgtest [19:49:22]: upgrading testbed (apt dist-upgrade and autopurge) 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Solving dependencies... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s autopkgtest [19:49:24]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 58s autopkgtest [19:49:25]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 60s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 60s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 60s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 60s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 60s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 60s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 60s gpgv: issuer "tchet@debian.org" 60s gpgv: Can't check signature: No public key 60s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 61s autopkgtest [19:49:28]: testing package multiqc version 1.21+dfsg-2 61s autopkgtest [19:49:28]: build not needed 63s autopkgtest [19:49:30]: test run-unit-test: preparing testbed 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Solving dependencies... 63s The following NEW packages will be installed: 63s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 63s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 63s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 63s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 63s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 63s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 63s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 63s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 63s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 63s python3-decorator python3-fastjsonschema python3-fonttools python3-fs 63s python3-humanfriendly python3-humanize python3-importlib-metadata 63s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 63s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 63s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 63s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 63s python3-pyaml-env python3-pytz python3-rich-click python3-scipy 63s python3-spectra python3-sympy python3-tenacity python3-tk python3-traitlets 63s python3-tz python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 63s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 63s 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 63s Need to get 94.0 MB of archives. 63s After this operation, 479 MB of additional disk space will be used. 63s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 63s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 63s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 63s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 63s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 64s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 64s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 64s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 64s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 64s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 64s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 64s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 64s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 64s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 64s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 64s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 64s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 64s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 64s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-2 [171 kB] 64s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 64s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 64s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 64s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 64s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 64s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 64s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 64s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 64s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 64s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 64s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 64s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 64s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 64s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 64s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-7 [197 kB] 64s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 64s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 64s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 64s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 64s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 64s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 64s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 64s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 64s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 64s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 64s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 64s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 64s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanize all 4.12.1-1 [58.3 kB] 64s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 64s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown all 3.8.2-2 [75.2 kB] 64s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 64s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 64s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 64s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 64s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 64s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 64s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 64s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-2 [255 kB] 64s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 64s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 64s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 64s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 64s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 64s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 64s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 64s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 64s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 64s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 64s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 64s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 64s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 64s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 65s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 65s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 65s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 65s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 65s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tz all 2025.2-4 [1746 B] 65s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 65s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 65s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 65s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 65s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 65s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 65s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyaml-env all 1.2.1-2 [9090 B] 65s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rich-click all 1.6.0-2 [18.0 kB] 65s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 65s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-colormath all 3.0.0-4 [36.6 kB] 65s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spectra all 0.1.0-1 [17.2 kB] 65s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lzstring all 1.0.4-3 [6262 B] 65s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 multiqc all 1.21+dfsg-2 [733 kB] 66s Fetched 94.0 MB in 2s (41.1 MB/s) 66s Selecting previously unselected package python3-numpy-dev:amd64. 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 66s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 66s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 66s Selecting previously unselected package libblas3:amd64. 66s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 66s Unpacking libblas3:amd64 (3.12.1-7) ... 66s Selecting previously unselected package libgfortran5:amd64. 66s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 66s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 66s Selecting previously unselected package liblapack3:amd64. 66s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 66s Unpacking liblapack3:amd64 (3.12.1-7) ... 66s Selecting previously unselected package python3-numpy. 66s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 66s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 66s Selecting previously unselected package libtcl8.6:amd64. 66s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 66s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 66s Selecting previously unselected package fonts-dejavu-mono. 66s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 66s Unpacking fonts-dejavu-mono (2.37-8) ... 66s Selecting previously unselected package fonts-dejavu-core. 66s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 66s Unpacking fonts-dejavu-core (2.37-8) ... 66s Selecting previously unselected package fontconfig-config. 66s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 66s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 66s Selecting previously unselected package libfontconfig1:amd64. 66s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 66s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 66s Selecting previously unselected package libxrender1:amd64. 66s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_amd64.deb ... 66s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 66s Selecting previously unselected package libxft2:amd64. 66s Preparing to unpack .../11-libxft2_2.3.6-1build1_amd64.deb ... 66s Unpacking libxft2:amd64 (2.3.6-1build1) ... 66s Selecting previously unselected package x11-common. 66s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 66s Unpacking x11-common (1:7.7+24ubuntu1) ... 66s Selecting previously unselected package libxss1:amd64. 66s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_amd64.deb ... 66s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 66s Selecting previously unselected package libtk8.6:amd64. 66s Preparing to unpack .../14-libtk8.6_8.6.17-1_amd64.deb ... 66s Unpacking libtk8.6:amd64 (8.6.17-1) ... 66s Selecting previously unselected package tk8.6-blt2.5. 66s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 66s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 66s Selecting previously unselected package blt. 66s Preparing to unpack .../16-blt_2.5.3+dfsg-8_amd64.deb ... 66s Unpacking blt (2.5.3+dfsg-8) ... 66s Selecting previously unselected package fonts-glyphicons-halflings. 66s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 66s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 66s Selecting previously unselected package fonts-lyx. 66s Preparing to unpack .../18-fonts-lyx_2.4.4-2_all.deb ... 66s Unpacking fonts-lyx (2.4.4-2) ... 66s 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python3-pil:amd64. 67s Preparing to unpack .../51-python3-pil_11.3.0-1ubuntu2_amd64.deb ... 67s Unpacking python3-pil:amd64 (11.3.0-1ubuntu2) ... 67s Selecting previously unselected package python3.14-tk. 67s Preparing to unpack .../52-python3.14-tk_3.14.0-4_amd64.deb ... 67s Unpacking python3.14-tk (3.14.0-4) ... 67s Selecting previously unselected package python3.13-tk. 67s Preparing to unpack .../53-python3.13-tk_3.13.9-1_amd64.deb ... 67s Unpacking python3.13-tk (3.13.9-1) ... 67s Selecting previously unselected package python3-tk:amd64. 67s Preparing to unpack .../54-python3-tk_3.13.9-1_amd64.deb ... 67s Unpacking python3-tk:amd64 (3.13.9-1) ... 67s Selecting previously unselected package python3-pil.imagetk:amd64. 67s Preparing to unpack .../55-python3-pil.imagetk_11.3.0-1ubuntu2_amd64.deb ... 67s Unpacking python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 67s Selecting previously unselected package python3-contourpy. 67s Preparing to unpack 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previously unselected package python3-lz4. 67s Preparing to unpack .../62-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 67s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 67s Selecting previously unselected package python3-decorator. 67s Preparing to unpack .../63-python3-decorator_5.2.1-2_all.deb ... 67s Unpacking python3-decorator (5.2.1-2) ... 67s Selecting previously unselected package python3-scipy. 67s Preparing to unpack .../64-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 67s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 67s Selecting previously unselected package python3-mpmath. 67s Preparing to unpack .../65-python3-mpmath_1.3.0-2_all.deb ... 67s Unpacking python3-mpmath (1.3.0-2) ... 67s Selecting previously unselected package python3-sympy. 67s Preparing to unpack .../66-python3-sympy_1.14.0-2_all.deb ... 67s Unpacking python3-sympy (1.14.0-2) ... 67s Selecting previously unselected package python3-ufolib2. 67s Preparing to unpack .../67-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 67s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 67s Selecting previously unselected package python3-unicodedata2. 67s Preparing to unpack .../68-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 67s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 67s Selecting previously unselected package python3-zopfli. 67s Preparing to unpack .../69-python3-zopfli_0.4.0-1_amd64.deb ... 67s Unpacking python3-zopfli (0.4.0-1) ... 67s Selecting previously unselected package unicode-data. 67s Preparing to unpack .../70-unicode-data_16.0.0-1_all.deb ... 67s Unpacking unicode-data (16.0.0-1) ... 67s Selecting previously unselected package python3-fonttools. 67s Preparing to unpack .../71-python3-fonttools_4.57.0-2build1_amd64.deb ... 67s Unpacking python3-fonttools (4.57.0-2build1) ... 67s Selecting previously unselected package python3-kiwisolver. 67s Preparing to unpack .../72-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 67s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 67s Selecting previously unselected package python3-matplotlib. 67s Preparing to unpack .../73-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 67s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 68s Selecting previously unselected package python3-pytz. 68s Preparing to unpack .../74-python3-pytz_2025.2-4_all.deb ... 68s Unpacking python3-pytz (2025.2-4) ... 68s Selecting previously unselected package python3-tz. 68s Preparing to unpack .../75-python3-tz_2025.2-4_all.deb ... 68s Unpacking python3-tz (2025.2-4) ... 68s Selecting previously unselected package python3-fastjsonschema. 68s Preparing to unpack .../76-python3-fastjsonschema_2.21.1-1_all.deb ... 68s Unpacking python3-fastjsonschema (2.21.1-1) ... 68s Selecting previously unselected package python3-traitlets. 68s Preparing to unpack .../77-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 68s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 68s Selecting previously unselected package python3-jupyter-core. 68s Preparing to unpack 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68s Selecting previously unselected package python3-networkx. 68s Preparing to unpack .../84-python3-networkx_3.2.1-4ubuntu1_all.deb ... 68s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 68s Selecting previously unselected package python3-colormath. 68s Preparing to unpack .../85-python3-colormath_3.0.0-4_all.deb ... 68s Unpacking python3-colormath (3.0.0-4) ... 68s Selecting previously unselected package python3-spectra. 68s Preparing to unpack .../86-python3-spectra_0.1.0-1_all.deb ... 68s Unpacking python3-spectra (0.1.0-1) ... 68s Selecting previously unselected package python3-lzstring. 68s Preparing to unpack .../87-python3-lzstring_1.0.4-3_all.deb ... 68s Unpacking python3-lzstring (1.0.4-3) ... 68s Selecting previously unselected package multiqc. 68s Preparing to unpack .../88-multiqc_1.21+dfsg-2_all.deb ... 68s Unpacking multiqc (1.21+dfsg-2) ... 69s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 69s Setting up liblcms2-2:amd64 (2.16-2) ... 69s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 69s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 69s Setting up python3-importlib-metadata (8.7.0-2) ... 69s Setting up libxrender1:amd64 (1:0.9.12-1) ... 69s Setting up python3-lz4 (4.4.4+dfsg-3) ... 69s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 69s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 69s Setting up fonts-lyx (2.4.4-2) ... 69s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 69s Setting up x11-common (1:7.7+24ubuntu1) ... 69s Setting up libdeflate0:amd64 (1.23-2) ... 69s Setting up libqhull-r8.0:amd64 (2020.2-7) ... 69s Setting up python3-pytz (2025.2-4) ... 69s Setting up libgomp1:amd64 (15.2.0-7ubuntu1) ... 69s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 69s Setting up python3-networkx (3.2.1-4ubuntu1) ... 70s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 70s Setting up python3-platformdirs (4.3.7-1) ... 70s Setting up python3-tz (2025.2-4) ... 70s Setting up python3-fs (2.4.16-9ubuntu1) ... 70s Setting up unicode-data (16.0.0-1) ... 70s Setting up python3-decorator (5.2.1-2) ... 70s Setting up libblas3:amd64 (3.12.1-7) ... 70s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 70s Setting up python3-pyaml-env (1.2.1-2) ... 70s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 70s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 70s Setting up libzopfli1 (1.0.3-3) ... 70s Setting up python3-humanfriendly (10.0-6) ... 71s Setting up python3-brotli (1.1.0-2build6) ... 71s Setting up python3-cycler (0.12.1-2) ... 71s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 71s Setting up fonts-dejavu-mono (2.37-8) ... 71s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 71s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 71s Setting up python3-markdown (3.8.2-2) ... 71s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 71s Setting up fonts-dejavu-core (2.37-8) ... 71s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 71s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 71s Setting up libwebp7:amd64 (1.5.0-0.1) ... 71s Setting up python3-rich-click (1.6.0-2) ... 71s Setting up python3-fastjsonschema (2.21.1-1) ... 71s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 71s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 71s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 71s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 71s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 71s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 71s Setting up python3-mpmath (1.3.0-2) ... 71s Setting up python3-lzstring (1.0.4-3) ... 72s Setting up python3-humanize (4.12.1-1) ... 72s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 72s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 72s Setting up python3-coloredlogs (15.0.1-1) ... 72s Setting up python3-jupyter-core (5.7.2-5) ... 72s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 72s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 72s Setting up python3-sympy (1.14.0-2) ... 76s Setting up liblapack3:amd64 (3.12.1-7) ... 76s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 76s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 76s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 76s Setting up python3-nbformat (5.9.1-1) ... 76s Setting up python3-zopfli (0.4.0-1) ... 76s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 76s Setting up libjs-jquery-metadata (12-4) ... 76s Setting up libraqm0:amd64 (0.10.3-1) ... 76s Setting up python3-plotly (5.20.0+dfsg-1) ... 80s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 81s Setting up python3-colormath (3.0.0-4) ... 81s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 81s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 81s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 81s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 81s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 81s :param sigma: :math:`\sigma` 81s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 81s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 81s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 81s logger.debug(" \- Target RGB space: %s", target_rgb) 81s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 81s logger.debug(" \- Target native illuminant: %s", target_illum) 81s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 81s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 81s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 81s logger.debug(" \* Applying transformation from %s to %s ", 81s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 81s logger.debug(" \* New values: %.3f, %.3f, %.3f", 81s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 81s logger.debug(" \- Original illuminant: %s", self.illuminant) 81s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 81s logger.debug(" \- Target illuminant: %s", target_illuminant) 81s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 81s logger.debug(" \* Applying transformation from %s to %s ", 81s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 81s Setting up python3-lxml:amd64 (6.0.2-1) ... 81s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 81s Setting up python3-contourpy (1.3.1-2) ... 81s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 81s Setting up libxft2:amd64 (2.3.6-1build1) ... 81s Setting up python3-scipy (1.15.3-1ubuntu1) ... 84s Setting up python3-spectra (0.1.0-1) ... 84s Setting up libtk8.6:amd64 (8.6.17-1) ... 84s Setting up python3.13-tk (3.13.9-1) ... 84s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 84s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 84s Setting up python3.14-tk (3.14.0-4) ... 84s Setting up blt (2.5.3+dfsg-8) ... 84s Setting up python3-tk:amd64 (3.13.9-1) ... 84s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 84s Setting up python3-fonttools (4.57.0-2build1) ... 85s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 85s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 86s Setting up multiqc (1.21+dfsg-2) ... 86s Processing triggers for libc-bin (2.42-2ubuntu2) ... 86s Processing triggers for man-db (2.13.1-1) ... 88s autopkgtest [19:49:55]: test run-unit-test: [----------------------- 88s 88s /// MultiQC 🔍 | v1.21 88s 88s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 88s 88s MultiQC aggregates results from bioinformatics analyses across many samples 88s into a single report. 88s It searches a given directory for analysis logs and compiles a HTML report. 88s It's a general use tool, perfect for summarising the output from numerous 88s bioinformatics tools. 88s To run, supply with one or more directory to scan for analysis results. For 88s example, to run in the current working directory, use 'multiqc .' 88s 88s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 88s │ --force -f Overwrite any existing reports │ 88s │ --config -c Specific config file to load, after those in MultiQC │ 88s │ dir / home dir / working dir. │ 88s │ (PATH) │ 88s │ --cl-config Specify MultiQC config YAML on the command line │ 88s │ (TEXT) │ 88s │ --filename -n Report filename. Use 'stdout' to print to standard │ 88s │ out. │ 88s │ (TEXT) │ 88s │ --outdir -o Create report in the specified output directory. │ 88s │ (TEXT) │ 88s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 88s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 88s │ --ignore-symlinks Ignore symlinked directories and files │ 88s │ --file-list -l Supply a file containing a list of file paths to be │ 88s │ searched, one per row │ 88s ╰──────────────────────────────────────────────────────────────────────────────╯ 88s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 88s │ --module -m Use only this module. Can specify multiple times. │ 88s │ (MODULE NAME) │ 88s │ --exclude -e Do not use this module. Can specify multiple times. │ 88s │ (MODULE NAME) │ 88s ╰──────────────────────────────────────────────────────────────────────────────╯ 88s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 88s │ --dirs -d Prepend directory to sample names │ 88s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 88s │ to take from start of path. │ 88s │ (INTEGER) │ 88s │ --fullnames -s Do not clean the sample names (leave as full file │ 88s │ name) │ 88s │ --fn_as_s_name Use the log filename as the sample name │ 88s │ --replace-names TSV file to rename sample names during report │ 88s │ generation │ 88s │ (PATH) │ 88s ╰──────────────────────────────────────────────────────────────────────────────╯ 88s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 88s │ --title -i Report title. Printed as page header, used for │ 88s │ filename if not otherwise specified. │ 88s │ (TEXT) │ 88s │ --comment -b Custom comment, will be printed at the top of the │ 88s │ report. │ 88s │ (TEXT) │ 88s │ --template -t Report template to use. │ 88s │ (default|gathered|geo|highcharts|sections|simple) │ 88s │ --sample-names TSV file containing alternative sample names for │ 88s │ renaming buttons in the report │ 88s │ (PATH) │ 88s │ --sample-filters TSV file containing show/hide patterns for the report │ 88s │ (PATH) │ 88s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 88s ╰──────────────────────────────────────────────────────────────────────────────╯ 88s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 88s │ --flat -fp Use only flat plots (static images) │ 88s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 88s │ --export -p Export plots as static images in addition to the report │ 88s │ --data-dir Force the parsed data directory to be created. │ 88s │ --no-data-dir Prevent the parsed data directory from being created. │ 88s │ --data-format -k Output parsed data in a different format. │ 88s │ (tsv|csv|json|yaml) │ 88s │ --zip-data-dir -z Compress the data directory. │ 88s │ --no-report Do not generate a report, only export data and plots │ 88s │ --pdf Creates PDF report with the 'simple' template. Requires │ 88s │ Pandoc to be installed. │ 88s ╰──────────────────────────────────────────────────────────────────────────────╯ 88s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 88s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 88s │ --quiet -q Only show log warnings │ 88s │ --strict Don't catch exceptions, run additional code checks │ 88s │ to help development. │ 88s │ --development,--dev Development mode. Do not compress and minimise JS, │ 88s │ export uncompressed plot data │ 88s │ --require-logs Require all explicitly requested modules to have │ 88s │ log files. If not, MultiQC will exit with an error. │ 88s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 88s │ the report │ 88s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 88s │ MegaQC options are found │ 88s │ --no-ansi Disable coloured log output │ 88s │ --version Show the version and exit. │ 88s │ --help -h Show this message and exit. │ 88s ╰──────────────────────────────────────────────────────────────────────────────╯ 88s 88s See http://multiqc.info for more details. 88s 88s FIXME: The test data should be delivered in a separate binary package once freeze is over 89s 89s /// MultiQC 🔍 | v1.21 89s 89s | multiqc | MultiQC Version v1.32 now available! 89s | multiqc | Search path : /tmp/autopkgtest.C81Gch/autopkgtest_tmp/data 89s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 89s | feature_counts | Found 8 reports 89s | star | Found 8 reports 89s | cutadapt | Found 16 reports 89s | fastqc | Found 32 reports 90s | multiqc | Report : multiqc_report.html 90s | multiqc | Data : multiqc_data 90s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpr61y8vdx/assets/js/packages/jszip.min.js' 90s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpr61y8vdx/assets/js/packages/plotly-2.27.0.min.js' 90s | multiqc | MultiQC complete 90s -e 90s PASS 90s 90s autopkgtest [19:49:57]: test run-unit-test: -----------------------] 91s run-unit-test PASS 91s autopkgtest [19:49:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 91s autopkgtest [19:49:58]: @@@@@@@@@@@@@@@@@@@@ summary 91s run-unit-test PASS