0s autopkgtest [07:11:56]: starting date and time: 2025-11-02 07:11:56+0000 0s autopkgtest [07:11:56]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [07:11:56]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xikc00e8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pillow --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pillow/12.0.0-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-4.secgroup --name adt-resolute-amd64-multiqc-20251102-071156-juju-7f2275-prod-proposed-migration-environment-15-b00e320b-86fc-4a26-a61f-f08ac89a721b --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-multiqc-20251102-071156-juju-7f2275-prod-proposed-migration-environment-15-b00e320b-86fc-4a26-a61f-f08ac89a721b from image adt/ubuntu-resolute-amd64-server-20251102.img (UUID 72d7f978-0dad-4e32-88b0-7b530c382de7)... 59s autopkgtest [07:12:55]: testbed dpkg architecture: amd64 59s autopkgtest [07:12:55]: testbed apt version: 3.1.11 59s autopkgtest [07:12:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 59s autopkgtest [07:12:55]: testbed release detected to be: None 61s autopkgtest [07:12:56]: updating testbed package index (apt update) 61s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 61s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [107 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [43.7 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1387 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 61s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [161 kB] 61s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [112 kB] 61s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4440 B] 61s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 61s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 61s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 61s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [390 kB] 61s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1038 kB] 62s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [34.8 kB] 62s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [29.3 kB] 62s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [8844 B] 62s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1672 B] 63s Fetched 3484 kB in 1s (2502 kB/s) 64s Reading package lists... 65s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Reading package lists... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 67s Calculating upgrade... 67s The following packages will be upgraded: 67s apparmor intel-microcode libapparmor1 libexpat1 libffi8 libuv1t64 67s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 12.5 MB of archives. 67s After this operation, 8192 B of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libexpat1 amd64 2.7.3-1 [91.4 kB] 67s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libapparmor1 amd64 5.0.0~alpha1-0ubuntu9 [57.7 kB] 67s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libffi8 amd64 3.5.2-2 [25.6 kB] 67s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 apparmor amd64 5.0.0~alpha1-0ubuntu9 [711 kB] 68s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libuv1t64 amd64 1.51.0-2ubuntu1 [103 kB] 68s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 intel-microcode amd64 3.20250812.1ubuntu1 [11.5 MB] 69s dpkg-preconfigure: unable to re-open stdin: No such file or directory 69s Fetched 12.5 MB in 1s (8613 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78534 files and directories currently installed.) 69s Preparing to unpack .../0-libexpat1_2.7.3-1_amd64.deb ... 69s Unpacking libexpat1:amd64 (2.7.3-1) over (2.7.1-2) ... 69s Preparing to unpack .../1-libapparmor1_5.0.0~alpha1-0ubuntu9_amd64.deb ... 69s Unpacking libapparmor1:amd64 (5.0.0~alpha1-0ubuntu9) over (5.0.0~alpha1-0ubuntu8.1) ... 69s Preparing to unpack .../2-libffi8_3.5.2-2_amd64.deb ... 69s Unpacking libffi8:amd64 (3.5.2-2) over (3.5.2-1build1) ... 69s Preparing to unpack .../3-apparmor_5.0.0~alpha1-0ubuntu9_amd64.deb ... 70s Unpacking apparmor (5.0.0~alpha1-0ubuntu9) over (5.0.0~alpha1-0ubuntu8.1) ... 71s Preparing to unpack .../4-libuv1t64_1.51.0-2ubuntu1_amd64.deb ... 71s Unpacking libuv1t64:amd64 (1.51.0-2ubuntu1) over (1.50.0-2ubuntu1) ... 71s Preparing to unpack .../5-intel-microcode_3.20250812.1ubuntu1_amd64.deb ... 71s Unpacking intel-microcode (3.20250812.1ubuntu1) over (3.20250512.1ubuntu1) ... 71s Setting up libexpat1:amd64 (2.7.3-1) ... 71s Setting up libapparmor1:amd64 (5.0.0~alpha1-0ubuntu9) ... 71s Setting up intel-microcode (3.20250812.1ubuntu1) ... 71s intel-microcode: microcode will be updated at next boot 71s Setting up libuv1t64:amd64 (1.51.0-2ubuntu1) ... 71s Setting up apparmor (5.0.0~alpha1-0ubuntu9) ... 72s Installing new version of config file /etc/apparmor.d/lsblk ... 73s Installing new version of config file /etc/apparmor.d/systemd-detect-virt ... 73s Installing new version of config file /etc/apparmor.d/tnftp ... 74s Reloading AppArmor profiles 76s Setting up libffi8:amd64 (3.5.2-2) ... 76s Processing triggers for libc-bin (2.42-0ubuntu3) ... 76s Processing triggers for systemd (257.9-0ubuntu2) ... 76s Processing triggers for man-db (2.13.1-1) ... 78s Processing triggers for procps (2:4.0.4-8ubuntu3) ... 78s Processing triggers for initramfs-tools (0.150ubuntu4) ... 78s update-initramfs: Generating /boot/initrd.img-6.17.0-5-generic 88s autopkgtest [07:13:24]: upgrading testbed (apt dist-upgrade and autopurge) 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Solving dependencies... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s autopkgtest [07:13:26]: rebooting testbed after setup commands that affected boot 110s autopkgtest [07:13:46]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 113s autopkgtest [07:13:49]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 116s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 116s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 116s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 116s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 116s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 116s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 116s gpgv: issuer "tchet@debian.org" 116s gpgv: Can't check signature: No public key 116s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 117s autopkgtest [07:13:53]: testing package multiqc version 1.21+dfsg-2 117s autopkgtest [07:13:53]: build not needed 119s autopkgtest [07:13:55]: test run-unit-test: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Solving dependencies... 120s The following NEW packages will be installed: 120s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 120s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 120s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 120s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 120s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 120s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 120s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 120s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 120s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 120s python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools 120s python3-fs python3-humanfriendly python3-humanize python3-importlib-metadata 120s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 120s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 120s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 120s python3-packaging python3-pil python3-pil.imagetk python3-platformdirs 120s python3-plotly python3-pyaml-env python3-pytz python3-rich-click 120s python3-scipy python3-spectra python3-sympy python3-tenacity python3-tk 120s python3-traitlets python3-tz python3-ufolib2 python3-unicodedata2 120s python3-zopfli python3.13-tk python3.14-tk tk8.6-blt2.5 unicode-data 120s x11-common 120s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 94.1 MB of archives. 120s After this operation, 480 MB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 120s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 121s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 121s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 122s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 125s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 126s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 126s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 126s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 126s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 126s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 126s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 126s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 126s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 126s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 127s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 127s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 127s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 127s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-2 [171 kB] 127s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 127s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 127s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 127s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 128s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 128s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 128s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 128s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 128s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 128s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 128s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 128s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 128s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 128s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 128s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 128s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 128s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 128s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 128s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 128s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 129s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 129s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 129s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 129s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 129s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 129s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 129s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 129s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanize all 4.12.1-1 [58.3 kB] 129s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 129s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown all 3.8.2-2 [75.2 kB] 129s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 130s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 130s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 130s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 130s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 130s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 130s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 130s Get:57 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 130s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-2 [255 kB] 130s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 130s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 131s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 131s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-8ubuntu1 [91.1 kB] 131s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.1-1build1 [2336 kB] 131s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 131s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 131s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 135s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 135s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 136s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 136s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 136s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.2.3.post1-1 [10.8 kB] 136s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 137s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 137s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 137s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 137s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 138s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 138s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tz all 2025.2-4 [1746 B] 138s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 138s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 138s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 138s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 138s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 138s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 138s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyaml-env all 1.2.1-2 [9090 B] 138s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rich-click all 1.6.0-2 [18.0 kB] 138s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 139s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-colormath all 3.0.0-4 [36.6 kB] 139s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spectra all 0.1.0-1 [17.2 kB] 139s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lzstring all 1.0.4-3 [6262 B] 139s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 multiqc all 1.21+dfsg-2 [733 kB] 139s Fetched 94.1 MB in 19s (4956 kB/s) 139s Selecting previously unselected package python3-numpy-dev:amd64. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78534 files and directories currently installed.) 140s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 140s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 140s Selecting previously unselected package libblas3:amd64. 140s Preparing to unpack .../01-libblas3_3.12.1-6build1_amd64.deb ... 140s Unpacking libblas3:amd64 (3.12.1-6build1) ... 140s Selecting previously unselected package libgfortran5:amd64. 140s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 140s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 140s Selecting previously unselected package liblapack3:amd64. 140s Preparing to unpack .../03-liblapack3_3.12.1-6build1_amd64.deb ... 140s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 140s Selecting previously unselected package python3-numpy. 140s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 140s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 140s Selecting previously unselected package libtcl8.6:amd64. 140s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 140s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 140s Selecting previously unselected package fonts-dejavu-mono. 140s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 140s Unpacking fonts-dejavu-mono (2.37-8) ... 140s Selecting previously unselected package fonts-dejavu-core. 140s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 140s Unpacking fonts-dejavu-core (2.37-8) ... 140s Selecting previously unselected package fontconfig-config. 140s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 141s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 141s Selecting previously unselected package libfontconfig1:amd64. 141s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 141s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 141s Selecting previously unselected package libxrender1:amd64. 141s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_amd64.deb ... 141s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 141s Selecting previously unselected package libxft2:amd64. 141s Preparing to unpack .../11-libxft2_2.3.6-1build1_amd64.deb ... 141s Unpacking libxft2:amd64 (2.3.6-1build1) ... 141s Selecting previously unselected package x11-common. 141s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 141s Unpacking x11-common (1:7.7+24ubuntu1) ... 141s Selecting previously unselected package libxss1:amd64. 141s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_amd64.deb ... 141s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 141s Selecting previously unselected package libtk8.6:amd64. 141s Preparing to unpack .../14-libtk8.6_8.6.17-1_amd64.deb ... 141s Unpacking libtk8.6:amd64 (8.6.17-1) ... 141s Selecting previously unselected package tk8.6-blt2.5. 141s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 141s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 141s Selecting previously unselected package blt. 141s Preparing to unpack .../16-blt_2.5.3+dfsg-8_amd64.deb ... 141s Unpacking blt (2.5.3+dfsg-8) ... 141s Selecting previously unselected package fonts-glyphicons-halflings. 141s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 141s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 141s Selecting previously unselected package fonts-lyx. 141s Preparing to unpack .../18-fonts-lyx_2.4.4-2_all.deb ... 141s Unpacking fonts-lyx (2.4.4-2) ... 141s Selecting previously unselected package libdeflate0:amd64. 141s Preparing to unpack .../19-libdeflate0_1.23-2_amd64.deb ... 141s Unpacking libdeflate0:amd64 (1.23-2) ... 141s Selecting previously unselected package libgomp1:amd64. 141s Preparing to unpack .../20-libgomp1_15.2.0-7ubuntu1_amd64.deb ... 141s Unpacking libgomp1:amd64 (15.2.0-7ubuntu1) ... 141s Selecting previously unselected package libgraphite2-3:amd64. 141s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 141s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 141s Selecting previously unselected package libharfbuzz0b:amd64. 141s Preparing to unpack .../22-libharfbuzz0b_12.1.0-1_amd64.deb ... 141s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 141s Selecting previously unselected package libimagequant0:amd64. 141s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_amd64.deb ... 141s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 141s Selecting previously unselected package libjpeg-turbo8:amd64. 141s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 141s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 141s Selecting previously unselected package libjpeg8:amd64. 141s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_amd64.deb ... 141s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 141s Selecting previously unselected package libjs-bootstrap. 141s Preparing to unpack .../26-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 141s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 141s Selecting previously unselected package libjs-jquery. 141s Preparing to unpack .../27-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Selecting previously unselected package libjs-jquery-metadata. 141s Preparing to unpack .../28-libjs-jquery-metadata_12-4_all.deb ... 141s Unpacking libjs-jquery-metadata (12-4) ... 141s Selecting previously unselected package libjs-jquery-tablesorter. 141s Preparing to unpack .../29-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 141s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 141s Selecting previously unselected package libjs-jquery-ui. 141s Preparing to unpack .../30-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 141s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 141s Selecting previously unselected package liblcms2-2:amd64. 141s Preparing to unpack .../31-liblcms2-2_2.16-2_amd64.deb ... 141s Unpacking liblcms2-2:amd64 (2.16-2) ... 141s Selecting previously unselected package liblerc4:amd64. 141s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 141s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 141s Selecting previously unselected package libqhull-r8.0:amd64. 141s Preparing to unpack .../33-libqhull-r8.0_2020.2-6build1_amd64.deb ... 141s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 141s Selecting previously unselected package libraqm0:amd64. 141s Preparing to unpack .../34-libraqm0_0.10.3-1_amd64.deb ... 141s Unpacking libraqm0:amd64 (0.10.3-1) ... 141s Selecting previously unselected package libsharpyuv0:amd64. 141s Preparing to unpack .../35-libsharpyuv0_1.5.0-0.1_amd64.deb ... 141s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 141s Selecting previously unselected package libjbig0:amd64. 141s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 141s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 141s Selecting previously unselected package libwebp7:amd64. 141s Preparing to unpack .../37-libwebp7_1.5.0-0.1_amd64.deb ... 141s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 141s Selecting previously unselected package libtiff6:amd64. 142s Preparing to unpack .../38-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 142s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 142s Selecting previously unselected package libwebpdemux2:amd64. 142s Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_amd64.deb ... 142s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 142s Selecting previously unselected package libwebpmux3:amd64. 142s Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_amd64.deb ... 142s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 142s Selecting previously unselected package libxslt1.1:amd64. 142s Preparing to unpack .../41-libxslt1.1_1.1.43-0.3_amd64.deb ... 142s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 142s Selecting previously unselected package libzopfli1. 142s Preparing to unpack .../42-libzopfli1_1.0.3-3_amd64.deb ... 142s Unpacking libzopfli1 (1.0.3-3) ... 142s Selecting previously unselected package python3-click. 142s Preparing to unpack .../43-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 142s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 142s Selecting previously unselected package python3-humanfriendly. 142s Preparing to unpack .../44-python3-humanfriendly_10.0-6_all.deb ... 142s Unpacking python3-humanfriendly (10.0-6) ... 142s Selecting previously unselected package python3-coloredlogs. 142s Preparing to unpack .../45-python3-coloredlogs_15.0.1-1_all.deb ... 142s Unpacking python3-coloredlogs (15.0.1-1) ... 142s Selecting previously unselected package python3-humanize. 142s Preparing to unpack .../46-python3-humanize_4.12.1-1_all.deb ... 142s Unpacking python3-humanize (4.12.1-1) ... 142s Selecting previously unselected package python3-importlib-metadata. 142s Preparing to unpack .../47-python3-importlib-metadata_8.7.0-2_all.deb ... 142s Unpacking python3-importlib-metadata (8.7.0-2) ... 142s Selecting previously unselected package python3-markdown. 142s Preparing to unpack .../48-python3-markdown_3.8.2-2_all.deb ... 142s Unpacking python3-markdown (3.8.2-2) ... 142s Selecting previously unselected package python-matplotlib-data. 142s Preparing to unpack .../49-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 142s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 142s Selecting previously unselected package python3-dateutil. 142s Preparing to unpack .../50-python3-dateutil_2.9.0-4_all.deb ... 142s Unpacking python3-dateutil (2.9.0-4) ... 142s Selecting previously unselected package libopenjp2-7:amd64. 142s Preparing to unpack .../51-libopenjp2-7_2.5.3-2.1_amd64.deb ... 142s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 142s Selecting previously unselected package python3-pil:amd64. 142s Preparing to unpack .../52-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 142s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 142s Selecting previously unselected package python3.14-tk. 142s Preparing to unpack .../53-python3.14-tk_3.14.0-4_amd64.deb ... 142s Unpacking python3.14-tk (3.14.0-4) ... 142s Selecting previously unselected package python3.13-tk. 142s Preparing to unpack .../54-python3.13-tk_3.13.9-1_amd64.deb ... 142s Unpacking python3.13-tk (3.13.9-1) ... 142s Selecting previously unselected package python3-tk:amd64. 142s Preparing to unpack .../55-python3-tk_3.13.9-1_amd64.deb ... 142s Unpacking python3-tk:amd64 (3.13.9-1) ... 142s Selecting previously unselected package python3-pil.imagetk:amd64. 142s Preparing to unpack .../56-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 142s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 142s Selecting previously unselected package python3-contourpy. 142s Preparing to unpack .../57-python3-contourpy_1.3.1-2_amd64.deb ... 142s Unpacking python3-contourpy (1.3.1-2) ... 142s Selecting previously unselected package python3-cycler. 142s Preparing to unpack .../58-python3-cycler_0.12.1-2_all.deb ... 142s Unpacking python3-cycler (0.12.1-2) ... 142s Selecting previously unselected package python3-brotli. 142s Preparing to unpack .../59-python3-brotli_1.1.0-2build6_amd64.deb ... 142s Unpacking python3-brotli (1.1.0-2build6) ... 142s Selecting previously unselected package python3-platformdirs. 142s Preparing to unpack .../60-python3-platformdirs_4.3.7-1_all.deb ... 142s Unpacking python3-platformdirs (4.3.7-1) ... 142s Selecting previously unselected package python3-fs. 142s Preparing to unpack .../61-python3-fs_2.4.16-8ubuntu1_all.deb ... 142s Unpacking python3-fs (2.4.16-8ubuntu1) ... 142s Selecting previously unselected package python3-lxml:amd64. 142s Preparing to unpack .../62-python3-lxml_6.0.1-1build1_amd64.deb ... 142s Unpacking python3-lxml:amd64 (6.0.1-1build1) ... 142s Selecting previously unselected package python3-lz4. 142s Preparing to unpack .../63-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 142s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 142s Selecting previously unselected package python3-decorator. 142s Preparing to unpack .../64-python3-decorator_5.2.1-2_all.deb ... 142s Unpacking python3-decorator (5.2.1-2) ... 142s Selecting previously unselected package python3-scipy. 142s Preparing to unpack .../65-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 142s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 143s Selecting previously unselected package python3-mpmath. 143s Preparing to unpack .../66-python3-mpmath_1.3.0-2_all.deb ... 143s Unpacking python3-mpmath (1.3.0-2) ... 143s Selecting previously unselected package python3-sympy. 143s Preparing to unpack .../67-python3-sympy_1.13.3-5_all.deb ... 143s Unpacking python3-sympy (1.13.3-5) ... 143s Selecting previously unselected package python3-ufolib2. 143s Preparing to unpack .../68-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 143s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 143s Selecting previously unselected package python3-unicodedata2. 143s Preparing to unpack .../69-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 143s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 143s Selecting previously unselected package python3-zopfli. 143s Preparing to unpack .../70-python3-zopfli_0.2.3.post1-1_amd64.deb ... 143s Unpacking python3-zopfli (0.2.3.post1-1) ... 143s Selecting previously unselected package unicode-data. 143s Preparing to unpack .../71-unicode-data_16.0.0-1_all.deb ... 143s Unpacking unicode-data (16.0.0-1) ... 143s Selecting previously unselected package python3-fonttools. 143s Preparing to unpack .../72-python3-fonttools_4.57.0-2build1_amd64.deb ... 143s Unpacking python3-fonttools (4.57.0-2build1) ... 143s Selecting previously unselected package python3-kiwisolver. 143s Preparing to unpack .../73-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 143s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 143s Selecting previously unselected package python3-packaging. 143s Preparing to unpack .../74-python3-packaging_25.0-1_all.deb ... 143s Unpacking python3-packaging (25.0-1) ... 143s Selecting previously unselected package python3-matplotlib. 143s Preparing to unpack .../75-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 143s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 144s Selecting previously unselected package python3-pytz. 144s Preparing to unpack .../76-python3-pytz_2025.2-4_all.deb ... 144s Unpacking python3-pytz (2025.2-4) ... 144s Selecting previously unselected package python3-tz. 144s Preparing to unpack .../77-python3-tz_2025.2-4_all.deb ... 144s Unpacking python3-tz (2025.2-4) ... 144s Selecting previously unselected package python3-fastjsonschema. 144s Preparing to unpack .../78-python3-fastjsonschema_2.21.1-1_all.deb ... 144s Unpacking python3-fastjsonschema (2.21.1-1) ... 144s Selecting previously unselected package python3-traitlets. 144s Preparing to unpack .../79-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 144s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 144s Selecting previously unselected package python3-jupyter-core. 144s Preparing to unpack .../80-python3-jupyter-core_5.7.2-5_all.deb ... 144s Unpacking python3-jupyter-core (5.7.2-5) ... 144s Selecting previously unselected package python3-nbformat. 144s Preparing to unpack .../81-python3-nbformat_5.9.1-1_all.deb ... 144s Unpacking python3-nbformat (5.9.1-1) ... 144s Selecting previously unselected package python3-tenacity. 144s Preparing to unpack .../82-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 144s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 144s Selecting previously unselected package python3-plotly. 144s Preparing to unpack .../83-python3-plotly_5.20.0+dfsg-1_all.deb ... 144s Unpacking python3-plotly (5.20.0+dfsg-1) ... 145s Selecting previously unselected package python3-pyaml-env. 145s Preparing to unpack .../84-python3-pyaml-env_1.2.1-2_all.deb ... 145s Unpacking python3-pyaml-env (1.2.1-2) ... 145s Selecting previously unselected package python3-rich-click. 145s Preparing to unpack .../85-python3-rich-click_1.6.0-2_all.deb ... 145s Unpacking python3-rich-click (1.6.0-2) ... 145s Selecting previously unselected package python3-networkx. 145s Preparing to unpack .../86-python3-networkx_3.2.1-4ubuntu1_all.deb ... 145s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 145s Selecting previously unselected package python3-colormath. 145s Preparing to unpack .../87-python3-colormath_3.0.0-4_all.deb ... 145s Unpacking python3-colormath (3.0.0-4) ... 145s Selecting previously unselected package python3-spectra. 145s Preparing to unpack .../88-python3-spectra_0.1.0-1_all.deb ... 145s Unpacking python3-spectra (0.1.0-1) ... 145s Selecting previously unselected package python3-lzstring. 145s Preparing to unpack .../89-python3-lzstring_1.0.4-3_all.deb ... 145s Unpacking python3-lzstring (1.0.4-3) ... 145s Selecting previously unselected package multiqc. 145s Preparing to unpack .../90-multiqc_1.21+dfsg-2_all.deb ... 145s Unpacking multiqc (1.21+dfsg-2) ... 145s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 145s Setting up liblcms2-2:amd64 (2.16-2) ... 145s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 145s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 145s Setting up python3-importlib-metadata (8.7.0-2) ... 146s Setting up libxrender1:amd64 (1:0.9.12-1) ... 146s Setting up python3-lz4 (4.4.4+dfsg-3) ... 146s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 146s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 146s Setting up fonts-lyx (2.4.4-2) ... 146s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 146s Setting up x11-common (1:7.7+24ubuntu1) ... 146s Setting up libdeflate0:amd64 (1.23-2) ... 146s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 146s Setting up python3-pytz (2025.2-4) ... 146s Setting up libgomp1:amd64 (15.2.0-7ubuntu1) ... 146s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 147s Setting up python3-networkx (3.2.1-4ubuntu1) ... 148s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 148s Setting up python3-platformdirs (4.3.7-1) ... 148s Setting up python3-tz (2025.2-4) ... 148s Setting up python3-fs (2.4.16-8ubuntu1) ... 148s Setting up unicode-data (16.0.0-1) ... 148s Setting up python3-decorator (5.2.1-2) ... 148s Setting up libblas3:amd64 (3.12.1-6build1) ... 148s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 148s Setting up python3-pyaml-env (1.2.1-2) ... 148s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 148s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 148s Setting up python3-packaging (25.0-1) ... 149s Setting up libzopfli1 (1.0.3-3) ... 149s Setting up python3-humanfriendly (10.0-6) ... 149s Setting up python3-brotli (1.1.0-2build6) ... 149s Setting up python3-cycler (0.12.1-2) ... 149s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 149s Setting up fonts-dejavu-mono (2.37-8) ... 149s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 149s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 149s Setting up python3-markdown (3.8.2-2) ... 149s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 149s Setting up fonts-dejavu-core (2.37-8) ... 149s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 149s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 149s Setting up libwebp7:amd64 (1.5.0-0.1) ... 149s Setting up python3-rich-click (1.6.0-2) ... 149s Setting up python3-fastjsonschema (2.21.1-1) ... 150s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 150s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 150s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 150s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 150s Setting up python3-dateutil (2.9.0-4) ... 150s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 150s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 150s Setting up python3-mpmath (1.3.0-2) ... 150s Setting up python3-lzstring (1.0.4-3) ... 150s Setting up python3-humanize (4.12.1-1) ... 151s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 151s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 151s Setting up python3-coloredlogs (15.0.1-1) ... 151s Setting up python3-jupyter-core (5.7.2-5) ... 151s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 151s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 151s Setting up python3-sympy (1.13.3-5) ... 158s Setting up liblapack3:amd64 (3.12.1-6build1) ... 158s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 158s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 158s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 158s Setting up python3-nbformat (5.9.1-1) ... 158s Setting up python3-zopfli (0.2.3.post1-1) ... 158s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 158s Setting up libjs-jquery-metadata (12-4) ... 158s Setting up libraqm0:amd64 (0.10.3-1) ... 158s Setting up python3-plotly (5.20.0+dfsg-1) ... 165s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 167s Setting up python3-colormath (3.0.0-4) ... 167s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 167s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 167s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 167s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 167s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 167s :param sigma: :math:`\sigma` 167s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 167s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 167s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 167s logger.debug(" \- Target RGB space: %s", target_rgb) 167s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 167s logger.debug(" \- Target native illuminant: %s", target_illum) 167s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 167s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 167s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 167s logger.debug(" \* Applying transformation from %s to %s ", 167s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 167s logger.debug(" \* New values: %.3f, %.3f, %.3f", 167s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 167s logger.debug(" \- Original illuminant: %s", self.illuminant) 167s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 167s logger.debug(" \- Target illuminant: %s", target_illuminant) 167s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 167s logger.debug(" \* Applying transformation from %s to %s ", 167s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 167s Setting up python3-lxml:amd64 (6.0.1-1build1) ... 167s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 167s Setting up python3-contourpy (1.3.1-2) ... 167s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 167s Setting up libxft2:amd64 (2.3.6-1build1) ... 167s Setting up python3-scipy (1.15.3-1ubuntu1) ... 171s Setting up python3-spectra (0.1.0-1) ... 171s Setting up libtk8.6:amd64 (8.6.17-1) ... 171s Setting up python3.13-tk (3.13.9-1) ... 171s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 172s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 172s Setting up python3.14-tk (3.14.0-4) ... 172s Setting up blt (2.5.3+dfsg-8) ... 172s Setting up python3-tk:amd64 (3.13.9-1) ... 172s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 172s Setting up python3-fonttools (4.57.0-2build1) ... 173s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 173s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 174s Setting up multiqc (1.21+dfsg-2) ... 175s Processing triggers for libc-bin (2.42-0ubuntu3) ... 175s Processing triggers for man-db (2.13.1-1) ... 177s autopkgtest [07:14:53]: test run-unit-test: [----------------------- 178s 178s /// MultiQC 🔍 | v1.21 178s 178s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 178s 178s MultiQC aggregates results from bioinformatics analyses across many samples 178s into a single report. 178s It searches a given directory for analysis logs and compiles a HTML report. 178s It's a general use tool, perfect for summarising the output from numerous 178s bioinformatics tools. 178s To run, supply with one or more directory to scan for analysis results. For 178s example, to run in the current working directory, use 'multiqc .' 178s 178s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 178s │ --force -f Overwrite any existing reports │ 178s │ --config -c Specific config file to load, after those in MultiQC │ 178s │ dir / home dir / working dir. │ 178s │ (PATH) │ 178s │ --cl-config Specify MultiQC config YAML on the command line │ 178s │ (TEXT) │ 178s │ --filename -n Report filename. Use 'stdout' to print to standard │ 178s │ out. │ 178s │ (TEXT) │ 178s │ --outdir -o Create report in the specified output directory. │ 178s │ (TEXT) │ 178s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 178s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 178s │ --ignore-symlinks Ignore symlinked directories and files │ 178s │ --file-list -l Supply a file containing a list of file paths to be │ 178s │ searched, one per row │ 178s ╰──────────────────────────────────────────────────────────────────────────────╯ 178s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 178s │ --module -m Use only this module. Can specify multiple times. │ 178s │ (MODULE NAME) │ 178s │ --exclude -e Do not use this module. Can specify multiple times. │ 178s │ (MODULE NAME) │ 178s ╰──────────────────────────────────────────────────────────────────────────────╯ 178s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 178s │ --dirs -d Prepend directory to sample names │ 178s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 178s │ to take from start of path. │ 178s │ (INTEGER) │ 178s │ --fullnames -s Do not clean the sample names (leave as full file │ 178s │ name) │ 178s │ --fn_as_s_name Use the log filename as the sample name │ 178s │ --replace-names TSV file to rename sample names during report │ 178s │ generation │ 178s │ (PATH) │ 178s ╰──────────────────────────────────────────────────────────────────────────────╯ 178s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 178s │ --title -i Report title. Printed as page header, used for │ 178s │ filename if not otherwise specified. │ 178s │ (TEXT) │ 178s │ --comment -b Custom comment, will be printed at the top of the │ 178s │ report. │ 178s │ (TEXT) │ 178s │ --template -t Report template to use. │ 178s │ (default|gathered|geo|highcharts|sections|simple) │ 178s │ --sample-names TSV file containing alternative sample names for │ 178s │ renaming buttons in the report │ 178s │ (PATH) │ 178s │ --sample-filters TSV file containing show/hide patterns for the report │ 178s │ (PATH) │ 178s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 178s ╰──────────────────────────────────────────────────────────────────────────────╯ 178s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 178s │ --flat -fp Use only flat plots (static images) │ 178s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 178s │ --export -p Export plots as static images in addition to the report │ 178s │ --data-dir Force the parsed data directory to be created. │ 178s │ --no-data-dir Prevent the parsed data directory from being created. │ 178s │ --data-format -k Output parsed data in a different format. │ 178s │ (tsv|csv|json|yaml) │ 178s │ --zip-data-dir -z Compress the data directory. │ 178s │ --no-report Do not generate a report, only export data and plots │ 178s │ --pdf Creates PDF report with the 'simple' template. Requires │ 178s │ Pandoc to be installed. │ 178s ╰──────────────────────────────────────────────────────────────────────────────╯ 178s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 178s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 178s │ --quiet -q Only show log warnings │ 178s │ --strict Don't catch exceptions, run additional code checks │ 178s │ to help development. │ 178s │ --development,--dev Development mode. Do not compress and minimise JS, │ 178s │ export uncompressed plot data │ 178s │ --require-logs Require all explicitly requested modules to have │ 178s │ log files. If not, MultiQC will exit with an error. │ 178s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 178s │ the report │ 178s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 178s │ MegaQC options are found │ 178s │ --no-ansi Disable coloured log output │ 178s │ --version Show the version and exit. │ 178s │ --help -h Show this message and exit. │ 178s ╰──────────────────────────────────────────────────────────────────────────────╯ 178s 178s See http://multiqc.info for more details. 178s 178s FIXME: The test data should be delivered in a separate binary package once freeze is over 179s 179s /// MultiQC 🔍 | v1.21 179s 179s | multiqc | MultiQC Version v1.32 now available! 179s | multiqc | Search path : /tmp/autopkgtest.Lb4pw6/autopkgtest_tmp/data 180s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 180s | feature_counts | Found 8 reports 180s | star | Found 8 reports 180s | cutadapt | Found 16 reports 180s | fastqc | Found 32 reports 181s | multiqc | Report : multiqc_report.html 181s | multiqc | Data : multiqc_data 181s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpioz1c6ce/assets/js/packages/jszip.min.js' 181s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpioz1c6ce/assets/js/packages/plotly-2.27.0.min.js' 181s | multiqc | MultiQC complete 181s -e 181s PASS 181s 181s autopkgtest [07:14:57]: test run-unit-test: -----------------------] 182s run-unit-test PASS 182s autopkgtest [07:14:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 182s autopkgtest [07:14:58]: @@@@@@@@@@@@@@@@@@@@ summary 182s run-unit-test PASS