0s autopkgtest [12:57:08]: starting date and time: 2025-10-23 12:57:08+0000 0s autopkgtest [12:57:08]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [12:57:08]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dh7b9zyd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu4-ram16-disk100-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-10.secgroup --name adt-resolute-amd64-mdanalysis-20251023-125708-juju-7f2275-prod-proposed-migration-environment-20-3c3902a1-71ad-4893-89bc-ea179bd0ca43 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-mdanalysis-20251023-125708-juju-7f2275-prod-proposed-migration-environment-20-3c3902a1-71ad-4893-89bc-ea179bd0ca43 from image adt/ubuntu-resolute-amd64-server-20251022.img (UUID e0b5cd61-c9ee-4e30-97a7-7c67c05c2ee7)... 37s autopkgtest [12:57:45]: testbed dpkg architecture: amd64 37s autopkgtest [12:57:45]: testbed apt version: 3.1.8ubuntu1 37s autopkgtest [12:57:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 37s autopkgtest [12:57:45]: testbed release detected to be: None 38s autopkgtest [12:57:46]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 38s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 38s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 38s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 38s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 39s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 39s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.9 kB] 39s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [535 kB] 39s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [140 kB] 39s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [89.5 kB] 39s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 39s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 39s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [350 kB] 39s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [128 kB] 39s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 40s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 40s Fetched 1447 kB in 1s (983 kB/s) 40s Reading package lists... 41s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 41s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 41s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 41s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 41s Reading package lists... 41s Reading package lists... 41s Building dependency tree... 41s Reading state information... 41s Calculating upgrade... 41s The following packages will be upgraded: 41s python3-pyparsing python3-yaml 41s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 41s Need to get 275 kB of archives. 41s After this operation, 272 kB of additional disk space will be used. 41s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-yaml amd64 6.0.2-2 [188 kB] 41s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pyparsing all 3.1.3-1 [87.0 kB] 42s dpkg-preconfigure: unable to re-open stdin: No such file or directory 42s Fetched 275 kB in 0s (0 B/s) 42s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78458 files and directories currently installed.) 42s Preparing to unpack .../python3-yaml_6.0.2-2_amd64.deb ... 42s Unpacking python3-yaml (6.0.2-2) over (6.0.2-1build2) ... 42s Preparing to unpack .../python3-pyparsing_3.1.3-1_all.deb ... 42s Unpacking python3-pyparsing (3.1.3-1) over (3.1.2-1) ... 42s Setting up python3-yaml (6.0.2-2) ... 42s Setting up python3-pyparsing (3.1.3-1) ... 42s autopkgtest [12:57:50]: upgrading testbed (apt dist-upgrade and autopurge) 42s Reading package lists... 42s Building dependency tree... 42s Reading state information... 43s Calculating upgrade... 43s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 43s Reading package lists... 43s Building dependency tree... 43s Reading state information... 43s Solving dependencies... 43s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 45s autopkgtest [12:57:53]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 45s autopkgtest [12:57:53]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 105s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (dsc) [2945 B] 105s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (tar) [61.0 MB] 105s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (diff) [13.9 kB] 105s gpgv: Signature made Thu Jul 10 09:20:14 2025 UTC 105s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 105s gpgv: Can't check signature: No public key 105s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.9.0-12.dsc: no acceptable signature found 106s autopkgtest [12:58:54]: testing package mdanalysis version 2.9.0-12 106s autopkgtest [12:58:54]: build not needed 112s autopkgtest [12:59:00]: test test-mdanalysis: preparing testbed 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Solving dependencies... 112s The following NEW packages will be installed: 112s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-15 112s cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 112s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 112s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 112s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-15 112s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 112s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 112s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 112s libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 112s libfontenc1 libgcc-15-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 112s libhdf5-310 libhdf5-hl-310 libhwasan0 libimagequant0 libisl23 libitm1 112s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-mathjax 112s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblcms2-2 liblerc4 112s liblsan0 liblzf1 libmpc3 libnetcdf22 libopenjp2-7 libpixman-1-0 112s libpython3-all-dev libpython3-dev libpython3.13-dev libqhull-r8.0 112s libquadmath0 libraqm0 libsharpyuv0 libstdc++-15-dev libsz2 libtcl8.6 112s libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 112s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 112s libxss1 libzopfli1 m4 po-debconf pybuild-plugin-pyproject 112s python-matplotlib-data python-mdanalysis-doc python3-alabaster python3-all 112s python3-all-dev python3-biopython python3-brotli python3-build python3-cairo 112s python3-cftime python3-charset-normalizer python3-citeproc python3-contourpy 112s python3-cycler python3-dateutil python3-decorator python3-defusedxml 112s python3-dev python3-docutils python3-duecredit python3-fasteners 112s python3-filelock python3-fonttools python3-freetype python3-fs 112s python3-griddataformats python3-gsd python3-h5py python3-h5py-serial 112s python3-hypothesis python3-imagesize python3-iniconfig python3-installer 112s python3-joblib python3-kiwisolver python3-latexcodec python3-looseversion 112s python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib 112s python3-mdanalysis python3-mmtf python3-monotonic python3-mpmath 112s python3-mrcfile python3-msgpack python3-msmb-theme python3-netcdf4 112s python3-networkx python3-numpy python3-numpy-dev python3-packaging 112s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 112s python3-platformdirs python3-pluggy python3-pybtex python3-pybtex-docutils 112s python3-pyproject-hooks python3-pytest python3-pytz python3-reportlab 112s python3-rlpycairo python3-roman python3-scipy python3-seaborn python3-six 112s python3-sklearn python3-sklearn-lib python3-snowballstemmer 112s python3-sortedcontainers python3-sphinx python3-sphinx-rtd-theme 112s python3-sphinx-sitemap python3-sphinxcontrib.bibtex 112s python3-sphinxcontrib.jquery python3-sympy python3-threadpoolctl python3-tk 112s python3-tqdm python3-ufolib2 python3-wheel python3-zopfli python3.13-dev 112s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 112s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 112s zlib1g-dev 112s 0 upgraded, 204 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 237 MB of archives. 112s After this operation, 1000 MB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-lato all 2.015-1 [2781 kB] 115s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 115s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 115s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 115s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 116s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 117s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 m4 amd64 1.4.19-8 [248 kB] 117s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 autoconf all 2.72-3.1ubuntu1 [384 kB] 117s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 autotools-dev all 20240727.1 [43.4 kB] 117s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 automake all 1:1.17-4ubuntu1 [572 kB] 117s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 autopoint all 0.23.1-2build2 [619 kB] 117s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 117s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 117s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 117s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 117s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 117s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 117s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 117s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 118s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 118s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 118s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 118s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 118s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 118s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 118s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 118s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 118s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1 [685 kB] 118s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-1build3 [57.0 kB] 118s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [12.9 MB] 119s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-5ubuntu1 [1028 B] 119s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 119s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 119s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-5ubuntu1 [47.4 kB] 119s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 119s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-5ubuntu1 [29.3 kB] 119s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-5ubuntu1 [3071 kB] 120s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-5ubuntu1 [1360 kB] 120s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-5ubuntu1 [2757 kB] 120s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-5ubuntu1 [1210 kB] 120s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-5ubuntu1 [1685 kB] 121s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-5ubuntu1 [153 kB] 121s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-5ubuntu1 [2863 kB] 121s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [25.4 MB] 123s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-5ubuntu1 [523 kB] 123s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 123s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 123s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-5ubuntu1 [2573 kB] 123s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [14.4 MB] 124s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-5ubuntu1 [23.7 kB] 124s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 124s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 124s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 124s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu5 [3643 kB] 124s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 124s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libtool all 2.5.4-4build1 [169 kB] 124s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 dh-autoreconf all 21 [12.5 kB] 124s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 124s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [20.4 kB] 124s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 dh-strip-nondeterminism all 1.14.2-1 [5098 B] 124s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 debugedit amd64 1:5.2-3 [49.9 kB] 124s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 dwz amd64 0.16-2 [115 kB] 124s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 gettext amd64 0.23.1-2build2 [1043 kB] 124s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 124s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 124s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 debhelper all 13.24.2ubuntu1 [896 kB] 124s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 dh-python all 6.20250414 [119 kB] 124s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 124s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19 [20.3 kB] 124s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 124s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 124s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-1 [171 kB] 124s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 125s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 125s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 125s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 125s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 125s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 125s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 125s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libexpat1-dev amd64 2.7.1-2 [1009 kB] 125s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 125s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 125s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 125s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 125s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 125s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 125s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 125s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 125s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 125s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 125s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 125s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 125s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 125s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 125s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 125s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 125s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 125s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 125s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-dev amd64 3.13.9-1 [5821 kB] 126s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3-dev amd64 3.13.7-1 [10.8 kB] 126s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3-all-dev amd64 3.13.7-1 [908 B] 126s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 126s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 126s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 126s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 126s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 126s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 126s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 126s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 126s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.1 [172 kB] 126s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 126s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 126s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 126s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-wheel all 0.46.1-2 [22.1 kB] 126s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-build all 1.2.2-4 [31.0 kB] 126s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 126s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 pybuild-plugin-pyproject all 6.20250414 [1728 B] 126s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2930 kB] 126s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 127s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-mdanalysis-doc all 2.9.0-12 [3459 kB] 128s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.7-1 [884 B] 128s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-dev amd64 3.13.9-1 [508 kB] 128s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dev amd64 3.13.7-1 [26.6 kB] 128s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all-dev amd64 3.13.7-1 [906 B] 128s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.2-1 [129 kB] 128s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 128s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.5-1 [9916 B] 128s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 128s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 128s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 128s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 128s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 128s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-4 [9332 B] 128s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.4-2 [1147 kB] 128s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 128s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.85+dfsg-4 [1719 kB] 129s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 129s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cftime amd64 1.6.4-2build1 [337 kB] 129s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.1-1build1 [2336 kB] 130s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-citeproc all 0.8.2-1 [99.9 kB] 130s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 130s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 130s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 130s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 130s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB] 130s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-roman all 5.1-1 [10.6 kB] 130s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 130s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-looseversion all 1.3.0-3 [8354 B] 130s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-duecredit all 0.10.2-2 [66.0 kB] 130s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-monotonic all 1.6-3 [5344 B] 130s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-fasteners all 0.19-2 [12.7 kB] 130s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-filelock all 3.18.0-1 [13.0 kB] 130s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 130s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 130s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 130s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 157s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 157s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 179s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 179s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.2.3.post1-1 [10.8 kB] 179s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 215s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 219s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 221s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 221s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-griddataformats all 1.0.2-2 [2107 kB] 225s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-gsd amd64 4.0.0-1 [244 kB] 225s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.13.0-1ubuntu1 [1184 kB] 227s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 227s Get:169 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 227s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-hypothesis all 6.130.5-2 [341 kB] 227s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 227s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 227s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.4.2-4 [205 kB] 227s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.7-3build2 [63.0 kB] 227s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 227s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [18.0 MB] 243s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 243s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-msgpack amd64 1.0.3-3build4 [87.7 kB] 243s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mmtf all 1.1.3-1 [16.2 kB] 243s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 243s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-5 [92.1 kB] 243s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mdanalysis amd64 2.9.0-12 [3956 kB] 252s Get:183 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-common all 8.2.3-1ubuntu2 [656 kB] 254s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 254s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 254s Get:186 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-sphinx all 8.2.3-1ubuntu2 [482 kB] 254s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sphinxcontrib.jquery all 4.1-6 [6856 B] 254s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [23.5 kB] 254s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 254s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-netcdf4 amd64 1.7.2-1build4 [667 kB] 257s Get:191 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 311s Get:192 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 311s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4949 kB] 357s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.2.3+dfsg-9 [3112 kB] 371s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 371s Get:196 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-six all 1.17.0-1 [13.2 kB] 371s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 371s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pybtex-docutils all 1.0.3-1 [7374 B] 371s Get:199 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pytest all 8.4.2-1 [268 kB] 371s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-seaborn all 0.13.2-5 [225 kB] 371s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [4359 kB] 372s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 372s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 372s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 372s Fetched 237 MB in 4min 20s (915 kB/s) 372s Selecting previously unselected package fonts-lato. 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78459 files and directories currently installed.) 372s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 372s Unpacking fonts-lato (2.015-1) ... 372s Selecting previously unselected package python3-numpy-dev:amd64. 372s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 372s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 372s Selecting previously unselected package libblas3:amd64. 372s Preparing to unpack .../002-libblas3_3.12.1-6build1_amd64.deb ... 372s Unpacking libblas3:amd64 (3.12.1-6build1) ... 372s Selecting previously unselected package libgfortran5:amd64. 372s Preparing to unpack .../003-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 372s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 372s Selecting previously unselected package liblapack3:amd64. 372s Preparing to unpack .../004-liblapack3_3.12.1-6build1_amd64.deb ... 372s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 372s Selecting previously unselected package python3-numpy. 372s Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 372s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 372s Selecting previously unselected package m4. 372s Preparing to unpack .../006-m4_1.4.19-8_amd64.deb ... 372s Unpacking m4 (1.4.19-8) ... 372s Selecting previously unselected package autoconf. 372s Preparing to unpack .../007-autoconf_2.72-3.1ubuntu1_all.deb ... 372s Unpacking autoconf (2.72-3.1ubuntu1) ... 372s Selecting previously unselected package autotools-dev. 372s Preparing to unpack .../008-autotools-dev_20240727.1_all.deb ... 372s Unpacking autotools-dev (20240727.1) ... 372s Selecting previously unselected package automake. 372s Preparing to unpack .../009-automake_1%3a1.17-4ubuntu1_all.deb ... 372s Unpacking automake (1:1.17-4ubuntu1) ... 372s Selecting previously unselected package autopoint. 372s Preparing to unpack .../010-autopoint_0.23.1-2build2_all.deb ... 372s Unpacking autopoint (0.23.1-2build2) ... 372s Selecting previously unselected package libtcl8.6:amd64. 372s Preparing to unpack .../011-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 372s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 372s Selecting previously unselected package fonts-dejavu-mono. 372s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8_all.deb ... 372s Unpacking fonts-dejavu-mono (2.37-8) ... 372s Selecting previously unselected package fonts-dejavu-core. 372s Preparing to unpack .../013-fonts-dejavu-core_2.37-8_all.deb ... 372s Unpacking fonts-dejavu-core (2.37-8) ... 372s Selecting previously unselected package libfontenc1:amd64. 372s Preparing to unpack .../014-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 372s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 372s Selecting previously unselected package x11-common. 372s Preparing to unpack .../015-x11-common_1%3a7.7+24ubuntu1_all.deb ... 372s Unpacking x11-common (1:7.7+24ubuntu1) ... 372s Selecting previously unselected package xfonts-encodings. 372s Preparing to unpack .../016-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 372s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 372s Selecting previously unselected package xfonts-utils. 372s Preparing to unpack .../017-xfonts-utils_1%3a7.7+7_amd64.deb ... 372s Unpacking xfonts-utils (1:7.7+7) ... 372s Selecting previously unselected package fonts-urw-base35. 372s Preparing to unpack .../018-fonts-urw-base35_20200910-8_all.deb ... 373s Unpacking fonts-urw-base35 (20200910-8) ... 373s Selecting previously unselected package fontconfig-config. 373s Preparing to unpack .../019-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 373s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 373s Selecting previously unselected package libfontconfig1:amd64. 373s Preparing to unpack .../020-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 373s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 373s Selecting previously unselected package libxrender1:amd64. 373s Preparing to unpack .../021-libxrender1_1%3a0.9.12-1_amd64.deb ... 373s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 373s Selecting previously unselected package libxft2:amd64. 373s Preparing to unpack .../022-libxft2_2.3.6-1build1_amd64.deb ... 373s Unpacking libxft2:amd64 (2.3.6-1build1) ... 373s Selecting previously unselected package libxss1:amd64. 373s Preparing to unpack .../023-libxss1_1%3a1.2.3-1build3_amd64.deb ... 373s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 373s Selecting previously unselected package libtk8.6:amd64. 373s Preparing to unpack .../024-libtk8.6_8.6.17-1_amd64.deb ... 373s Unpacking libtk8.6:amd64 (8.6.17-1) ... 373s Selecting previously unselected package tk8.6-blt2.5. 373s Preparing to unpack .../025-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 373s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 373s Selecting previously unselected package blt. 373s Preparing to unpack .../026-blt_2.5.3+dfsg-8_amd64.deb ... 373s Unpacking blt (2.5.3+dfsg-8) ... 373s Selecting previously unselected package libisl23:amd64. 373s Preparing to unpack .../027-libisl23_0.27-1_amd64.deb ... 373s Unpacking libisl23:amd64 (0.27-1) ... 373s Selecting previously unselected package libmpc3:amd64. 373s Preparing to unpack .../028-libmpc3_1.3.1-1build3_amd64.deb ... 373s Unpacking libmpc3:amd64 (1.3.1-1build3) ... 373s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 373s Preparing to unpack .../029-cpp-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package cpp-15. 373s Preparing to unpack .../030-cpp-15_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package cpp-x86-64-linux-gnu. 373s Preparing to unpack .../031-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 373s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 373s Selecting previously unselected package cpp. 373s Preparing to unpack .../032-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 373s Unpacking cpp (4:15.2.0-4ubuntu1) ... 373s Selecting previously unselected package libcc1-0:amd64. 373s Preparing to unpack .../033-libcc1-0_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking libcc1-0:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package libgomp1:amd64. 373s Preparing to unpack .../034-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package libitm1:amd64. 373s Preparing to unpack .../035-libitm1_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking libitm1:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package libasan8:amd64. 373s Preparing to unpack .../036-libasan8_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking libasan8:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package liblsan0:amd64. 373s Preparing to unpack .../037-liblsan0_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking liblsan0:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package libtsan2:amd64. 373s Preparing to unpack .../038-libtsan2_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking libtsan2:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package libubsan1:amd64. 373s Preparing to unpack .../039-libubsan1_15.2.0-5ubuntu1_amd64.deb ... 373s Unpacking libubsan1:amd64 (15.2.0-5ubuntu1) ... 373s Selecting previously unselected package libhwasan0:amd64. 373s Preparing to unpack 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package dwz. 374s Preparing to unpack .../061-dwz_0.16-2_amd64.deb ... 374s Unpacking dwz (0.16-2) ... 374s Selecting previously unselected package gettext. 374s Preparing to unpack .../062-gettext_0.23.1-2build2_amd64.deb ... 374s Unpacking gettext (0.23.1-2build2) ... 374s Selecting previously unselected package intltool-debian. 374s Preparing to unpack .../063-intltool-debian_0.35.0+20060710.6_all.deb ... 374s Unpacking intltool-debian (0.35.0+20060710.6) ... 374s Selecting previously unselected package po-debconf. 374s Preparing to unpack .../064-po-debconf_1.0.21+nmu1_all.deb ... 374s Unpacking po-debconf (1.0.21+nmu1) ... 374s Selecting previously unselected package debhelper. 374s Preparing to unpack .../065-debhelper_13.24.2ubuntu1_all.deb ... 374s Unpacking debhelper (13.24.2ubuntu1) ... 374s Selecting previously unselected package dh-python. 374s Preparing to unpack .../066-dh-python_6.20250414_all.deb ... 374s Unpacking dh-python (6.20250414) ... 374s Selecting previously unselected package sgml-base. 374s Preparing to unpack .../067-sgml-base_1.31+nmu1_all.deb ... 374s Unpacking sgml-base (1.31+nmu1) ... 374s Selecting previously unselected package xml-core. 374s Preparing to unpack .../068-xml-core_0.19_all.deb ... 374s Unpacking xml-core (0.19) ... 374s Selecting previously unselected package docutils-common. 374s Preparing to unpack .../069-docutils-common_0.21.2+dfsg-2_all.deb ... 374s Unpacking docutils-common (0.21.2+dfsg-2) ... 374s Selecting previously unselected package fonts-font-awesome. 374s Preparing to unpack .../070-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 374s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 374s Selecting previously unselected package fonts-lyx. 374s Preparing to unpack .../071-fonts-lyx_2.4.4-1_all.deb ... 374s Unpacking fonts-lyx (2.4.4-1) ... 374s Selecting previously unselected package fonts-mathjax. 374s Preparing to unpack .../072-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 374s 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unselected package libdeflate0:amd64. 374s Preparing to unpack .../078-libdeflate0_1.23-2_amd64.deb ... 374s Unpacking libdeflate0:amd64 (1.23-2) ... 374s Selecting previously unselected package libexpat1-dev:amd64. 374s Preparing to unpack .../079-libexpat1-dev_2.7.1-2_amd64.deb ... 374s Unpacking libexpat1-dev:amd64 (2.7.1-2) ... 374s Selecting previously unselected package libgraphite2-3:amd64. 374s Preparing to unpack .../080-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 374s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 374s Selecting previously unselected package libharfbuzz0b:amd64. 374s Preparing to unpack .../081-libharfbuzz0b_12.1.0-1_amd64.deb ... 374s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 374s Selecting previously unselected package libsz2:amd64. 374s Preparing to unpack .../082-libsz2_1.1.3-1_amd64.deb ... 374s Unpacking libsz2:amd64 (1.1.3-1) ... 374s Selecting previously unselected package libhdf5-310:amd64. 374s Preparing to unpack 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package libjbig0:amd64. 374s Preparing to unpack .../104-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 374s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 374s Selecting previously unselected package libwebp7:amd64. 374s Preparing to unpack .../105-libwebp7_1.5.0-0.1_amd64.deb ... 374s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 375s Selecting previously unselected package libtiff6:amd64. 375s Preparing to unpack .../106-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 375s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 375s Selecting previously unselected package libwebpdemux2:amd64. 375s Preparing to unpack .../107-libwebpdemux2_1.5.0-0.1_amd64.deb ... 375s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 375s Selecting previously unselected package libwebpmux3:amd64. 375s Preparing to unpack .../108-libwebpmux3_1.5.0-0.1_amd64.deb ... 375s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 375s Selecting previously unselected package libxslt1.1:amd64. 375s Preparing to unpack .../109-libxslt1.1_1.1.43-0.1_amd64.deb 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python3-installer. 375s Preparing to unpack .../115-python3-installer_0.7.0+dfsg1-3_all.deb ... 375s Unpacking python3-installer (0.7.0+dfsg1-3) ... 375s Selecting previously unselected package pybuild-plugin-pyproject. 375s Preparing to unpack .../116-pybuild-plugin-pyproject_6.20250414_all.deb ... 375s Unpacking pybuild-plugin-pyproject (6.20250414) ... 375s Selecting previously unselected package python-matplotlib-data. 375s Preparing to unpack .../117-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... 375s Unpacking python-matplotlib-data (3.10.1+dfsg1-4) ... 375s Selecting previously unselected package libjs-mathjax. 375s Preparing to unpack .../118-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 375s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 375s Selecting previously unselected package python-mdanalysis-doc. 375s Preparing to unpack .../119-python-mdanalysis-doc_2.9.0-12_all.deb ... 375s Unpacking python-mdanalysis-doc (2.9.0-12) ... 375s Selecting previously unselected package python3-all. 375s Preparing to unpack .../120-python3-all_3.13.7-1_amd64.deb ... 375s Unpacking python3-all (3.13.7-1) ... 375s Selecting previously unselected package python3.13-dev. 375s Preparing to unpack .../121-python3.13-dev_3.13.9-1_amd64.deb ... 375s Unpacking python3.13-dev (3.13.9-1) ... 375s Selecting previously unselected package python3-dev. 375s Preparing to unpack .../122-python3-dev_3.13.7-1_amd64.deb ... 375s Unpacking python3-dev (3.13.7-1) ... 375s Selecting previously unselected package python3-all-dev. 375s Preparing to unpack .../123-python3-all-dev_3.13.7-1_amd64.deb ... 375s Unpacking python3-all-dev (3.13.7-1) ... 375s Selecting previously unselected package python3-charset-normalizer. 375s Preparing to unpack .../124-python3-charset-normalizer_3.4.2-1_amd64.deb ... 375s Unpacking python3-charset-normalizer (3.4.2-1) ... 375s Selecting previously unselected package python3.13-tk. 375s Preparing to unpack .../125-python3.13-tk_3.13.9-1_amd64.deb ... 375s Unpacking python3.13-tk (3.13.9-1) ... 375s Selecting previously unselected package python3-tk:amd64. 375s Preparing to unpack .../126-python3-tk_3.13.5-1_amd64.deb ... 375s Unpacking python3-tk:amd64 (3.13.5-1) ... 375s Selecting previously unselected package python3-pil.imagetk:amd64. 375s Preparing to unpack .../127-python3-pil.imagetk_11.3.0-1ubuntu2_amd64.deb ... 375s Unpacking python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 375s Selecting previously unselected package libopenjp2-7:amd64. 375s Preparing to unpack .../128-libopenjp2-7_2.5.3-2.1_amd64.deb ... 375s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 375s Selecting previously unselected package python3-pil:amd64. 375s Preparing to unpack .../129-python3-pil_11.3.0-1ubuntu2_amd64.deb ... 375s Unpacking python3-pil:amd64 (11.3.0-1ubuntu2) ... 375s Selecting previously unselected package python3-cairo. 375s Preparing to unpack .../130-python3-cairo_1.27.0-2build1_amd64.deb ... 375s Unpacking python3-cairo (1.27.0-2build1) ... 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python3-cycler (0.12.1-2) ... 375s Selecting previously unselected package python3-dateutil. 375s Preparing to unpack .../142-python3-dateutil_2.9.0-4_all.deb ... 375s Unpacking python3-dateutil (2.9.0-4) ... 375s Selecting previously unselected package python3-decorator. 375s Preparing to unpack .../143-python3-decorator_5.2.1-2_all.deb ... 375s Unpacking python3-decorator (5.2.1-2) ... 375s Selecting previously unselected package python3-defusedxml. 375s Preparing to unpack .../144-python3-defusedxml_0.7.1-3_all.deb ... 375s Unpacking python3-defusedxml (0.7.1-3) ... 375s Selecting previously unselected package python3-roman. 375s Preparing to unpack .../145-python3-roman_5.1-1_all.deb ... 375s Unpacking python3-roman (5.1-1) ... 375s Selecting previously unselected package python3-docutils. 375s Preparing to unpack .../146-python3-docutils_0.21.2+dfsg-2_all.deb ... 375s Unpacking python3-docutils (0.21.2+dfsg-2) ... 375s Selecting previously unselected package python3-looseversion. 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Unpacking python3-platformdirs (4.3.7-1) ... 375s Selecting previously unselected package python3-fs. 375s Preparing to unpack .../153-python3-fs_2.4.16-7_all.deb ... 375s Unpacking python3-fs (2.4.16-7) ... 375s Selecting previously unselected package python3-lz4. 375s Preparing to unpack .../154-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 375s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 375s Selecting previously unselected package python3-scipy. 375s Preparing to unpack .../155-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 375s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 376s Selecting previously unselected package python3-mpmath. 376s Preparing to unpack .../156-python3-mpmath_1.3.0-1_all.deb ... 376s Unpacking python3-mpmath (1.3.0-1) ... 376s Selecting previously unselected package python3-sympy. 376s Preparing to unpack .../157-python3-sympy_1.13.3-5_all.deb ... 376s Unpacking python3-sympy (1.13.3-5) ... 376s Selecting previously unselected package python3-ufolib2. 376s Preparing to unpack .../158-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 376s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 376s Selecting previously unselected package python3-zopfli. 376s Preparing to unpack .../159-python3-zopfli_0.2.3.post1-1_amd64.deb ... 376s Unpacking python3-zopfli (0.2.3.post1-1) ... 376s Selecting previously unselected package unicode-data. 376s Preparing to unpack .../160-unicode-data_16.0.0-1_all.deb ... 376s Unpacking unicode-data (16.0.0-1) ... 376s Selecting previously unselected package python3-fonttools. 376s Preparing to unpack .../161-python3-fonttools_4.57.0-2build1_amd64.deb ... 376s Unpacking python3-fonttools (4.57.0-2build1) ... 376s Selecting previously unselected package sphinx-rtd-theme-common. 376s Preparing to unpack .../162-sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb ... 376s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 376s Selecting previously unselected package python3-mrcfile. 376s Preparing to unpack .../163-python3-mrcfile_1.5.4-2_all.deb 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(2.4.0-2) ... 376s Selecting previously unselected package python3-hypothesis. 376s Preparing to unpack .../169-python3-hypothesis_6.130.5-2_all.deb ... 376s Unpacking python3-hypothesis (6.130.5-2) ... 376s Selecting previously unselected package python3-imagesize. 376s Preparing to unpack .../170-python3-imagesize_1.4.1-1_all.deb ... 376s Unpacking python3-imagesize (1.4.1-1) ... 376s Selecting previously unselected package python3-iniconfig. 376s Preparing to unpack .../171-python3-iniconfig_1.1.1-2_all.deb ... 376s Unpacking python3-iniconfig (1.1.1-2) ... 376s Selecting previously unselected package python3-joblib. 376s Preparing to unpack .../172-python3-joblib_1.4.2-4_all.deb ... 376s Unpacking python3-joblib (1.4.2-4) ... 376s Selecting previously unselected package python3-kiwisolver. 376s Preparing to unpack .../173-python3-kiwisolver_1.4.7-3build2_amd64.deb ... 376s Unpacking python3-kiwisolver (1.4.7-3build2) ... 376s Selecting previously unselected package python3-latexcodec. 376s Preparing to unpack .../174-python3-latexcodec_3.0.0-1_all.deb ... 376s Unpacking python3-latexcodec (3.0.0-1) ... 376s Selecting previously unselected package python3-matplotlib. 376s Preparing to unpack .../175-python3-matplotlib_3.10.1+dfsg1-4_amd64.deb ... 376s Unpacking python3-matplotlib (3.10.1+dfsg1-4) ... 376s Selecting previously unselected package python3-mda-xdrlib. 376s Preparing to unpack .../176-python3-mda-xdrlib_0.2.0-3_all.deb ... 376s Unpacking python3-mda-xdrlib (0.2.0-3) ... 376s Selecting previously unselected package python3-msgpack. 376s Preparing to unpack .../177-python3-msgpack_1.0.3-3build4_amd64.deb ... 376s Unpacking python3-msgpack (1.0.3-3build4) ... 376s Selecting previously unselected package python3-mmtf. 376s Preparing to unpack .../178-python3-mmtf_1.1.3-1_all.deb ... 376s Unpacking python3-mmtf (1.1.3-1) ... 376s Selecting previously unselected package python3-threadpoolctl. 376s Preparing to unpack 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python3-snowballstemmer (2.2.0-4build1) ... 377s Selecting previously unselected package python3-sphinx. 377s Preparing to unpack .../185-python3-sphinx_8.2.3-1ubuntu2_all.deb ... 377s Unpacking python3-sphinx (8.2.3-1ubuntu2) ... 377s Selecting previously unselected package python3-sphinxcontrib.jquery. 377s Preparing to unpack .../186-python3-sphinxcontrib.jquery_4.1-6_all.deb ... 377s Unpacking python3-sphinxcontrib.jquery (4.1-6) ... 377s Selecting previously unselected package python3-sphinx-rtd-theme. 377s Preparing to unpack .../187-python3-sphinx-rtd-theme_3.0.2+dfsg-3_all.deb ... 377s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 377s Selecting previously unselected package python3-msmb-theme. 377s Preparing to unpack .../188-python3-msmb-theme_1.2.0-4_all.deb ... 377s Unpacking python3-msmb-theme (1.2.0-4) ... 377s Selecting previously unselected package python3-netcdf4. 377s Preparing to unpack .../189-python3-netcdf4_1.7.2-1build4_amd64.deb ... 377s Unpacking 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up python3-latexcodec (3.0.0-1) ... 378s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 378s Setting up python3-all (3.13.7-1) ... 378s Setting up python3-pytz (2025.2-4) ... 378s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 378s Setting up python3-sortedcontainers (2.4.0-2) ... 378s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 378s Setting up python3-freetype (2.5.1-1) ... 379s Setting up python3-networkx (3.2.1-4ubuntu1) ... 379s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 379s Setting up python3-mda-xdrlib (0.2.0-3) ... 380s Setting up libaec0:amd64 (1.1.3-1) ... 380s Setting up python3-platformdirs (4.3.7-1) ... 380s Setting up python3-monotonic (1.6-3) ... 380s Setting up python3-fs (2.4.16-7) ... 380s Setting up unicode-data (16.0.0-1) ... 380s Setting up python3-six (1.17.0-1) ... 380s Setting up python3-roman (5.1-1) ... 380s Setting up python3-decorator (5.2.1-2) ... 380s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 380s Setting up autotools-dev (20240727.1) ... 380s Setting up libblas3:amd64 (3.12.1-6build1) ... 380s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 380s Setting up python3-packaging (25.0-1) ... 380s Setting up libexpat1-dev:amd64 (2.7.1-2) ... 380s Setting up python3-pyproject-hooks (1.2.0-1) ... 380s Setting up libzopfli1 (1.0.3-3) ... 380s Setting up python3-snowballstemmer (2.2.0-4build1) ... 380s Setting up python3-brotli (1.1.0-2build6) ... 380s Setting up liblzf1:amd64 (3.6-4) ... 380s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 380s Setting up libquadmath0:amd64 (15.2.0-5ubuntu1) ... 380s Setting up python3-cycler (0.12.1-2) ... 380s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 380s Setting up fonts-dejavu-mono (2.37-8) ... 380s Setting up python3-kiwisolver (1.4.7-3build2) ... 380s Setting up libmpc3:amd64 (1.3.1-1build3) ... 380s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 380s Setting up cython3 (3.0.11+dfsg-2ubuntu5) ... 381s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 381s Setting up autopoint (0.23.1-2build2) ... 381s Setting up fonts-dejavu-core (2.37-8) ... 381s Setting up python3-fasteners (0.19-2) ... 381s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 381s Setting up python3-installer (0.7.0+dfsg1-3) ... 381s Setting up libgfortran5:amd64 (15.2.0-5ubuntu1) ... 381s Setting up autoconf (2.72-3.1ubuntu1) ... 381s Setting up python3-pluggy (1.6.0-1) ... 381s Setting up libwebp7:amd64 (1.5.0-0.1) ... 381s Setting up python3-pybtex (0.24.0-4) ... 381s Setting up libubsan1:amd64 (15.2.0-5ubuntu1) ... 381s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 381s Setting up dwz (0.16-2) ... 381s Setting up python3-looseversion (1.3.0-3) ... 381s Setting up libhwasan0:amd64 (15.2.0-5ubuntu1) ... 381s Setting up libasan8:amd64 (15.2.0-5ubuntu1) ... 381s Setting up libjson-perl (4.10000-1) ... 381s Setting up libxslt1.1:amd64 (1.1.43-0.1) ... 381s Setting up debugedit (1:5.2-3) ... 381s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 381s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 381s Setting up python3-dateutil (2.9.0-4) ... 381s Setting up sgml-base (1.31+nmu1) ... 381s Setting up python3-msgpack (1.0.3-3build4) ... 381s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 381s Setting up libtsan2:amd64 (15.2.0-5ubuntu1) ... 381s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 381s Setting up python3-mpmath (1.3.0-1) ... 381s Setting up libisl23:amd64 (0.27-1) ... 381s Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... 381s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 381s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 381s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 381s Setting up libcc1-0:amd64 (15.2.0-5ubuntu1) ... 381s Setting up liblsan0:amd64 (15.2.0-5ubuntu1) ... 381s Setting up libsz2:amd64 (1.1.3-1) ... 381s Setting up libitm1:amd64 (15.2.0-5ubuntu1) ... 381s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 381s Setting up python3-imagesize (1.4.1-1) ... 382s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 382s Setting up automake (1:1.17-4ubuntu1) ... 382s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 382s Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... 382s Setting up python3-sympy (1.13.3-5) ... 385s Setting up liblapack3:amd64 (3.12.1-6build1) ... 385s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 385s Setting up gettext (0.23.1-2build2) ... 385s Setting up libgcc-15-dev:amd64 (15.2.0-5ubuntu1) ... 385s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 385s Setting up python3-pytest (8.4.2-1) ... 385s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 385s Setting up python3-hypothesis (6.130.5-2) ... 385s Setting up cpp-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 385s Setting up xfonts-utils (1:7.7+7) ... 385s Setting up python3-wheel (0.46.1-2) ... 386s Setting up python3-zopfli (0.2.3.post1-1) ... 386s Setting up intltool-debian (0.35.0+20060710.6) ... 386s Setting up gcc-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 386s Setting up libstdc++-15-dev:amd64 (15.2.0-5ubuntu1) ... 386s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 386s Setting up libraqm0:amd64 (0.10.3-1) ... 386s Setting up libpython3.13-dev:amd64 (3.13.9-1) ... 386s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 387s Setting up libjs-sphinxdoc (8.2.3-1ubuntu2) ... 387s Setting up dh-strip-nondeterminism (1.14.2-1) ... 387s Setting up libhdf5-310:amd64 (1.14.5+repack-3build1) ... 387s Setting up cpp-15 (15.2.0-5ubuntu1) ... 387s Setting up python3-lxml:amd64 (6.0.1-1build1) ... 387s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 387s Setting up xml-core (0.19) ... 387s Setting up python3-contourpy (1.3.1-1build1) ... 387s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 387s Setting up python3-build (1.2.2-4) ... 387s Setting up python3-mrcfile (1.5.4-2) ... 387s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 387s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 387s Setting up g++-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 387s Setting up libxft2:amd64 (2.3.6-1build1) ... 387s Setting up python3-scipy (1.15.3-1ubuntu1) ... 389s Setting up libpython3-dev:amd64 (3.13.7-1) ... 389s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 389s Setting up python3-citeproc (0.8.2-1) ... 389s Setting up pybuild-plugin-pyproject (6.20250414) ... 389s Setting up python3.13-dev (3.13.9-1) ... 389s Setting up po-debconf (1.0.21+nmu1) ... 389s Setting up libtk8.6:amd64 (8.6.17-1) ... 389s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... 389s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ... 389s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ... 389s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 389s Setting up python3-gsd (4.0.0-1) ... 389s Setting up python3-mmtf (1.1.3-1) ... 389s Setting up fonts-urw-base35 (20200910-8) ... 390s Setting up libcairo2:amd64 (1.18.4-1build1) ... 390s Setting up python3.13-tk (3.13.9-1) ... 390s Setting up python-mdanalysis-doc (2.9.0-12) ... 390s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 390s Setting up gcc-15 (15.2.0-5ubuntu1) ... 390s Setting up python3-griddataformats (1.0.2-2) ... 390s Setting up python3-pandas (2.2.3+dfsg-9) ... 392s Setting up libpython3-all-dev:amd64 (3.13.7-1) ... 392s Setting up sphinx-common (8.2.3-1ubuntu2) ... 392s Setting up python3-dev (3.13.7-1) ... 392s Setting up python3-h5py (3.13.0-1ubuntu1) ... 392s Setting up python3-sklearn (1.4.2+dfsg-8) ... 394s Setting up python3-cftime (1.6.4-2build1) ... 394s Setting up cpp (4:15.2.0-4ubuntu1) ... 394s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 394s Setting up g++-15 (15.2.0-5ubuntu1) ... 394s Setting up python3-netcdf4 (1.7.2-1build4) ... 394s Setting up python3-all-dev (3.13.7-1) ... 394s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 394s Setting up python3-cairo (1.27.0-2build1) ... 394s Setting up python3-duecredit (0.10.2-2) ... 394s Setting up libtool (2.5.4-4build1) ... 394s Setting up blt (2.5.3+dfsg-8) ... 394s Setting up python3-tk:amd64 (3.13.5-1) ... 394s Setting up gcc (4:15.2.0-4ubuntu1) ... 394s Setting up dh-autoreconf (21) ... 394s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 394s Setting up python3-rlpycairo (0.3.0-4) ... 394s Setting up python3-reportlab (4.4.4-2) ... 394s Setting up g++ (4:15.2.0-4ubuntu1) ... 394s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 394s Setting up build-essential (12.12ubuntu1) ... 394s Setting up debhelper (13.24.2ubuntu1) ... 394s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 394s Setting up python3-fonttools (4.57.0-2build1) ... 395s Setting up python3-matplotlib (3.10.1+dfsg1-4) ... 396s Setting up python3-seaborn (0.13.2-5) ... 396s Processing triggers for man-db (2.13.1-1) ... 397s Processing triggers for install-info (7.1.1-1ubuntu1) ... 397s Processing triggers for libc-bin (2.42-0ubuntu3) ... 397s Processing triggers for sgml-base (1.31+nmu1) ... 397s Setting up docutils-common (0.21.2+dfsg-2) ... 397s Setting up w3c-sgml-lib (1.3-3) ... 412s Setting up python3-biopython (1.85+dfsg-4) ... 413s Setting up python3-mdanalysis (2.9.0-12) ... 413s Processing triggers for sgml-base (1.31+nmu1) ... 413s Setting up python3-docutils (0.21.2+dfsg-2) ... 414s Setting up python3-pybtex-docutils (1.0.3-1) ... 414s Setting up python3-sphinx (8.2.3-1ubuntu2) ... 414s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 414s Setting up python3-sphinx-sitemap (2.6.0-1) ... 414s Setting up python3-sphinxcontrib.jquery (4.1-6) ... 414s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 414s Setting up python3-msmb-theme (1.2.0-4) ... 415s autopkgtest [13:04:03]: test test-mdanalysis: [----------------------- 415s mdanalysis tests are not stable, see Bug#1108309 and https://github.com/MDAnalysis/mdanalysis/issues/5078 415s hence skipping tests 416s autopkgtest [13:04:04]: test test-mdanalysis: -----------------------] 416s test-mdanalysis FLAKY non-zero exit status 2 416s autopkgtest [13:04:04]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 416s autopkgtest [13:04:04]: @@@@@@@@@@@@@@@@@@@@ summary 416s test-mdanalysis FLAKY non-zero exit status 2