0s autopkgtest [11:41:06]: starting date and time: 2026-01-24 11:41:06+0000 0s autopkgtest [11:41:06]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:41:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jn2d4nt9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-14.secgroup --name adt-resolute-amd64-mcaller-20260124-111819-juju-7f2275-prod-proposed-migration-environment-2-03172cf7-f940-4837-8f13-a13b83aef837 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-mcaller-20260124-111819-juju-7f2275-prod-proposed-migration-environment-2-03172cf7-f940-4837-8f13-a13b83aef837 from image adt/ubuntu-resolute-amd64-server-20260124.img (UUID 46811f22-3700-43f4-953b-ee3c613d71bb)... 77s autopkgtest [11:42:23]: testbed dpkg architecture: amd64 77s autopkgtest [11:42:23]: testbed apt version: 3.1.13 77s autopkgtest [11:42:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 77s autopkgtest [11:42:23]: testbed release detected to be: None 78s autopkgtest [11:42:24]: updating testbed package index (apt update) 78s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 78s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 78s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 78s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [998 kB] 78s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [92.3 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [24.3 kB] 78s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [98.2 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [115 kB] 78s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3712 B] 78s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 78s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 79s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 79s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [385 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [905 kB] 79s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [24.9 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [12.4 kB] 79s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 79s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [824 B] 79s Fetched 2806 kB in 1s (2856 kB/s) 80s Reading package lists... 80s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 81s Reading package lists... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 81s The following packages were automatically installed and are no longer required: 81s python3.13 python3.13-minimal 81s Use 'sudo apt autoremove' to remove them. 81s The following NEW packages will be installed: 81s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 81s The following packages will be upgraded: 81s libpython3-stdlib python3 python3-gdbm python3-minimal rust-coreutils 81s 5 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 10.4 MB of archives. 81s After this operation, 25.2 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 82s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 82s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 82s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 82s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 82s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 82s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 82s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 rust-coreutils amd64 0.5.0-0ubuntu1 [3628 kB] 82s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 82s dpkg-preconfigure: unable to re-open stdin: No such file or directory 82s Fetched 10.4 MB in 1s (20.5 MB/s) 82s Selecting previously unselected package libpython3.14-minimal:amd64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124177 files and directories currently installed.) 82s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 82s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 82s Selecting previously unselected package python3.14-minimal. 82s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 82s Unpacking python3.14-minimal (3.14.2-1) ... 82s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 82s Setting up python3.14-minimal (3.14.2-1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124519 files and directories currently installed.) 83s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 83s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 83s Setting up python3-minimal (3.14.2-1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124519 files and directories currently installed.) 83s Preparing to unpack .../python3_3.14.2-1_amd64.deb ... 83s running python pre-rtupdate hooks for python3.14... 83s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 83s Selecting previously unselected package libpython3.14-stdlib:amd64. 83s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_amd64.deb ... 83s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 83s Selecting previously unselected package python3.14. 83s Preparing to unpack .../python3.14_3.14.2-1_amd64.deb ... 83s Unpacking python3.14 (3.14.2-1) ... 83s Preparing to unpack .../libpython3-stdlib_3.14.2-1_amd64.deb ... 83s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ... 83s Preparing to unpack .../rust-coreutils_0.5.0-0ubuntu1_amd64.deb ... 83s Unpacking rust-coreutils (0.5.0-0ubuntu1) over (0.2.2-0ubuntu2) ... 83s Setting up rust-coreutils (0.5.0-0ubuntu1) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124980 files and directories currently installed.) 84s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 84s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 84s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 84s Setting up python3.14 (3.14.2-1) ... 84s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 84s Setting up python3-gdbm (3.14.2-1) ... 84s Setting up python3 (3.14.2-1) ... 84s running python rtupdate hooks for python3.14... 84s running python post-rtupdate hooks for python3.14... 84s Processing triggers for man-db (2.13.1-1) ... 85s Processing triggers for systemd (259-1ubuntu2) ... 85s autopkgtest [11:42:31]: upgrading testbed (apt dist-upgrade and autopurge) 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Calculating upgrade... 85s The following packages were automatically installed and are no longer required: 85s python3.13 python3.13-minimal 85s Use 'sudo apt autoremove' to remove them. 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Solving dependencies... 86s The following packages will be REMOVED: 86s python3.13* python3.13-minimal* 86s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 86s After this operation, 7860 kB disk space will be freed. 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124978 files and directories currently installed.) 86s Removing python3.13 (3.13.11-1) ... 86s Removing python3.13-minimal (3.13.11-1) ... 86s Processing triggers for man-db (2.13.1-1) ... 87s Processing triggers for systemd (259-1ubuntu2) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124951 files and directories currently installed.) 87s Purging configuration files for python3.13-minimal (3.13.11-1) ... 89s autopkgtest [11:42:35]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 89s autopkgtest [11:42:35]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller 90s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (dsc) [2234 B] 90s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (tar) [6613 kB] 90s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (diff) [7588 B] 90s gpgv: Signature made Tue Dec 16 20:01:30 2025 UTC 90s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 90s gpgv: Can't check signature: No public key 90s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3build1.dsc: no acceptable signature found 90s autopkgtest [11:42:36]: testing package mcaller version 1.0.3+git20210624.b415090-3build1 90s autopkgtest [11:42:36]: build not needed 91s autopkgtest [11:42:37]: test run-unit-test: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Solving dependencies... 92s The following NEW packages will be installed: 92s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 92s fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 92s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 92s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 92s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 92s liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 92s libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 92s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 92s libxss1 libzopfli1 mcaller python-matplotlib-data python3-biopython 92s python3-brotli python3-cairo python3-charset-normalizer python3-contourpy 92s python3-cycler python3-decorator python3-fonttools python3-freetype 92s python3-h5py python3-h5py-serial python3-joblib python3-kiwisolver 92s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 92s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 92s python3-pil.imagetk python3-pysam python3-pytz python3-reportlab 92s python3-rlpycairo python3-scipy python3-seaborn python3-sklearn 92s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 92s python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 92s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 92s xfonts-encodings xfonts-utils xml-core 92s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 121 MB of archives. 92s After this operation, 569 MB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 92s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 92s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build2 [14.1 kB] 92s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 92s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 92s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7build1 [97.1 kB] 92s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8build1 [10.9 MB] 92s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.4ubuntu1 [38.1 kB] 92s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-extra all 2.37-8build1 [1944 kB] 92s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 92s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 92s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.4ubuntu1 [143 kB] 92s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 92s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 92s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 92s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 92s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 92s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 92s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 92s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 92s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 92s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 92s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 92s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 92s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2build1 [108 kB] 92s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 92s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 92s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 92s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 92s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 92s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 92s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 92s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 92s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 92s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 92s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 92s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 92s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 92s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 92s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 92s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 92s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 92s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 92s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 92s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 92s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 92s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn-lib amd64 1.7.2+dfsg-4 [4339 kB] 93s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.5.2-1 [210 kB] 93s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 93s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-3 [18.8 MB] 93s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-threadpoolctl all 3.1.0-1build1 [20.7 kB] 93s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn all 1.7.2+dfsg-4 [2616 kB] 93s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 93s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 93s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.4-2 [173 kB] 93s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 93s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 93s Get:63 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-tk amd64 3.14.2-1 [11.2 kB] 93s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 93s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 93s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 93s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 93s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-2 [92.2 kB] 93s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-4 [9332 B] 93s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.9-1 [1149 kB] 93s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 93s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19build1 [20.3 kB] 93s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3build1 [278 kB] 93s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.86+dfsg-1 [1682 kB] 93s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 93s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 93s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 93s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 93s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 93s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 93s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 93s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 93s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 93s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 93s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 93s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 93s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 93s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 94s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 94s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 94s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 94s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 94s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-seaborn all 0.13.2-6 [225 kB] 94s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pysam amd64 0.23.3+ds-2 [4536 kB] 94s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 mcaller all 1.0.3+git20210624.b415090-3build1 [19.5 kB] 95s Fetched 121 MB in 3s (45.1 MB/s) 95s Selecting previously unselected package python3-numpy-dev:amd64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124953 files and directories currently installed.) 95s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 95s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 95s Selecting previously unselected package libblas3:amd64. 95s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_amd64.deb ... 95s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 95s Selecting previously unselected package libgfortran5:amd64. 95s Preparing to unpack .../02-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 95s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 95s Selecting previously unselected package liblapack3:amd64. 95s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 95s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 95s Selecting previously unselected package python3-numpy. 95s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 95s Unpacking python3-numpy (1:2.3.5+ds-3) ... 95s Selecting previously unselected package fonts-dejavu-mono. 95s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8build1) ... 95s Selecting previously unselected package fonts-dejavu-core. 95s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 95s Unpacking fonts-dejavu-core (2.37-8build1) ... 95s Selecting previously unselected package libfontenc1:amd64. 95s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1build2_amd64.deb ... 95s Unpacking libfontenc1:amd64 (1:1.1.8-1build2) ... 95s Selecting previously unselected package x11-common. 95s Preparing to unpack .../08-x11-common_1%3a7.7+24ubuntu1_all.deb ... 95s Unpacking x11-common (1:7.7+24ubuntu1) ... 95s Selecting previously unselected package xfonts-encodings. 95s Preparing to unpack .../09-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 95s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 95s Selecting previously unselected package xfonts-utils. 95s Preparing to unpack .../10-xfonts-utils_1%3a7.7+7build1_amd64.deb ... 95s Unpacking xfonts-utils (1:7.7+7build1) ... 95s Selecting previously unselected package fonts-urw-base35. 95s Preparing to unpack .../11-fonts-urw-base35_20200910-8build1_all.deb ... 95s Unpacking fonts-urw-base35 (20200910-8build1) ... 95s Selecting previously unselected package fontconfig-config. 95s Preparing to unpack .../12-fontconfig-config_2.15.0-2.4ubuntu1_amd64.deb ... 95s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 95s Selecting previously unselected package fonts-dejavu-extra. 95s Preparing to unpack .../13-fonts-dejavu-extra_2.37-8build1_all.deb ... 95s Unpacking fonts-dejavu-extra (2.37-8build1) ... 95s Selecting previously unselected package fonts-lyx. 95s Preparing to unpack .../14-fonts-lyx_2.5.0~RC2-3_all.deb ... 95s Unpacking fonts-lyx (2.5.0~RC2-3) ... 95s Selecting previously unselected package libaec0:amd64. 95s Preparing to unpack .../15-libaec0_1.1.4-2_amd64.deb ... 95s Unpacking libaec0:amd64 (1.1.4-2) ... 95s Selecting previously unselected package libfontconfig1:amd64. 95s Preparing to unpack .../16-libfontconfig1_2.15.0-2.4ubuntu1_amd64.deb ... 95s Unpacking libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 95s Selecting previously unselected package libpixman-1-0:amd64. 95s Preparing to unpack .../17-libpixman-1-0_0.46.4-1_amd64.deb ... 95s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 95s Selecting previously unselected package libxcb-render0:amd64. 95s Preparing to unpack .../18-libxcb-render0_1.17.0-2build1_amd64.deb ... 95s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 95s Selecting previously unselected package libxcb-shm0:amd64. 95s Preparing to unpack .../19-libxcb-shm0_1.17.0-2build1_amd64.deb ... 95s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 95s Selecting previously unselected package libxrender1:amd64. 95s Preparing to unpack .../20-libxrender1_1%3a0.9.12-1_amd64.deb ... 95s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 95s Selecting previously unselected package libcairo2:amd64. 95s Preparing to unpack .../21-libcairo2_1.18.4-3_amd64.deb ... 95s Unpacking libcairo2:amd64 (1.18.4-3) ... 95s Selecting previously unselected package libdeflate0:amd64. 95s Preparing to unpack .../22-libdeflate0_1.23-2_amd64.deb ... 95s Unpacking libdeflate0:amd64 (1.23-2) ... 95s Selecting previously unselected package libgomp1:amd64. 95s Preparing to unpack .../23-libgomp1_15.2.0-11ubuntu1_amd64.deb ... 95s Unpacking libgomp1:amd64 (15.2.0-11ubuntu1) ... 95s Selecting previously unselected package libgraphite2-3:amd64. 95s Preparing to unpack .../24-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 95s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 95s Selecting previously unselected package libharfbuzz0b:amd64. 95s Preparing to unpack .../25-libharfbuzz0b_12.3.0-4_amd64.deb ... 95s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 95s Selecting previously unselected package libsz2:amd64. 95s Preparing to unpack .../26-libsz2_1.1.4-2_amd64.deb ... 95s Unpacking libsz2:amd64 (1.1.4-2) ... 95s Selecting previously unselected package libhdf5-310:amd64. 95s Preparing to unpack .../27-libhdf5-310_1.14.6+repack-2_amd64.deb ... 95s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 95s Selecting previously unselected package libhdf5-hl-310:amd64. 95s Preparing to unpack .../28-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 95s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 95s Selecting previously unselected package libhtscodecs2:amd64. 95s Preparing to unpack .../29-libhtscodecs2_1.6.1-2build1_amd64.deb ... 95s Unpacking libhtscodecs2:amd64 (1.6.1-2build1) ... 95s Selecting previously unselected package libhts3t64:amd64. 95s Preparing to unpack .../30-libhts3t64_1.22.1+ds2-1_amd64.deb ... 95s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 95s Selecting previously unselected package libimagequant0:amd64. 95s Preparing to unpack .../31-libimagequant0_2.18.0-1build1_amd64.deb ... 95s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 95s Selecting previously unselected package libjpeg-turbo8:amd64. 95s Preparing to unpack .../32-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 95s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 95s Selecting previously unselected package libjpeg8:amd64. 95s Preparing to unpack .../33-libjpeg8_8c-2ubuntu11_amd64.deb ... 95s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 95s Selecting previously unselected package liblcms2-2:amd64. 96s Preparing to unpack .../34-liblcms2-2_2.17-1_amd64.deb ... 96s Unpacking liblcms2-2:amd64 (2.17-1) ... 96s Selecting previously unselected package liblerc4:amd64. 96s Preparing to unpack .../35-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 96s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 96s Selecting previously unselected package liblzf1:amd64. 96s Preparing to unpack .../36-liblzf1_3.6-4build1_amd64.deb ... 96s Unpacking liblzf1:amd64 (3.6-4build1) ... 96s Selecting previously unselected package libqhull-r8.0:amd64. 96s Preparing to unpack .../37-libqhull-r8.0_2020.2-8_amd64.deb ... 96s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 96s Selecting previously unselected package libraqm0:amd64. 96s Preparing to unpack .../38-libraqm0_0.10.3-1_amd64.deb ... 96s Unpacking libraqm0:amd64 (0.10.3-1) ... 96s Selecting previously unselected package libsharpyuv0:amd64. 96s Preparing to unpack .../39-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 96s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 96s Selecting previously unselected package libtcl8.6:amd64. 96s Preparing to unpack .../40-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 96s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 96s Selecting previously unselected package libjbig0:amd64. 96s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 96s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 96s Selecting previously unselected package libwebp7:amd64. 96s Preparing to unpack .../42-libwebp7_1.5.0-0.1build1_amd64.deb ... 96s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 96s Selecting previously unselected package libtiff6:amd64. 96s Preparing to unpack .../43-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 96s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 96s Selecting previously unselected package libxft2:amd64. 96s Preparing to unpack .../44-libxft2_2.3.6-1build2_amd64.deb ... 96s Unpacking libxft2:amd64 (2.3.6-1build2) ... 96s Selecting previously unselected package libxss1:amd64. 96s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build4_amd64.deb ... 96s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 96s Selecting previously unselected package libtk8.6:amd64. 96s Preparing to unpack .../46-libtk8.6_8.6.17-1_amd64.deb ... 96s Unpacking libtk8.6:amd64 (8.6.17-1) ... 96s Selecting previously unselected package libwebpdemux2:amd64. 96s Preparing to unpack .../47-libwebpdemux2_1.5.0-0.1build1_amd64.deb ... 96s Unpacking libwebpdemux2:amd64 (1.5.0-0.1build1) ... 96s Selecting previously unselected package libwebpmux3:amd64. 96s Preparing to unpack .../48-libwebpmux3_1.5.0-0.1build1_amd64.deb ... 96s Unpacking libwebpmux3:amd64 (1.5.0-0.1build1) ... 96s Selecting previously unselected package libxslt1.1:amd64. 96s Preparing to unpack .../49-libxslt1.1_1.1.43-0.3_amd64.deb ... 96s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 96s Selecting previously unselected package libzopfli1. 96s Preparing to unpack .../50-libzopfli1_1.0.3-3_amd64.deb ... 96s Unpacking libzopfli1 (1.0.3-3) ... 96s Selecting previously unselected package python3-sklearn-lib:amd64. 96s Preparing to unpack .../51-python3-sklearn-lib_1.7.2+dfsg-4_amd64.deb ... 96s Unpacking python3-sklearn-lib:amd64 (1.7.2+dfsg-4) ... 96s Selecting previously unselected package python3-joblib. 96s Preparing to unpack .../52-python3-joblib_1.5.2-1_all.deb ... 96s Unpacking python3-joblib (1.5.2-1) ... 96s Selecting previously unselected package python3-decorator. 96s Preparing to unpack .../53-python3-decorator_5.2.1-2_all.deb ... 96s Unpacking python3-decorator (5.2.1-2) ... 96s Selecting previously unselected package python3-scipy. 96s Preparing to unpack .../54-python3-scipy_1.16.3-3_amd64.deb ... 96s Unpacking python3-scipy (1.16.3-3) ... 96s Selecting previously unselected package python3-threadpoolctl. 96s Preparing to unpack .../55-python3-threadpoolctl_3.1.0-1build1_all.deb ... 96s Unpacking python3-threadpoolctl (3.1.0-1build1) ... 96s Selecting previously unselected package python3-sklearn. 96s Preparing to unpack .../56-python3-sklearn_1.7.2+dfsg-4_all.deb ... 96s Unpacking python3-sklearn (1.7.2+dfsg-4) ... 96s Selecting previously unselected package python3-h5py-serial. 96s Preparing to unpack .../57-python3-h5py-serial_3.15.1-4_amd64.deb ... 96s Unpacking python3-h5py-serial (3.15.1-4) ... 96s Selecting previously unselected package python3-h5py. 96s Preparing to unpack .../58-python3-h5py_3.15.1-4_all.deb ... 96s Unpacking python3-h5py (3.15.1-4) ... 96s Selecting previously unselected package python3-charset-normalizer. 96s Preparing to unpack .../59-python3-charset-normalizer_3.4.4-2_amd64.deb ... 96s Unpacking python3-charset-normalizer (3.4.4-2) ... 96s Selecting previously unselected package python3.13-tk. 96s Preparing to unpack .../60-python3.13-tk_3.13.11-1_amd64.deb ... 96s Unpacking python3.13-tk (3.13.11-1) ... 96s Selecting previously unselected package python3.14-tk. 96s Preparing to unpack .../61-python3.14-tk_3.14.2-1_amd64.deb ... 96s Unpacking python3.14-tk (3.14.2-1) ... 96s Selecting previously unselected package python3-tk. 96s Preparing to unpack .../62-python3-tk_3.14.2-1_amd64.deb ... 96s Unpacking python3-tk (3.14.2-1) ... 96s Selecting previously unselected package python3-pil.imagetk:amd64. 96s Preparing to unpack .../63-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 96s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 96s Selecting previously unselected package libopenjp2-7:amd64. 96s Preparing to unpack .../64-libopenjp2-7_2.5.4-1_amd64.deb ... 96s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 96s Selecting previously unselected package python3-pil:amd64. 96s Preparing to unpack .../65-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 96s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 96s Selecting previously unselected package python3-cairo. 96s Preparing to unpack .../66-python3-cairo_1.27.0-2build1_amd64.deb ... 96s Unpacking python3-cairo (1.27.0-2build1) ... 96s Selecting previously unselected package python3-freetype. 96s Preparing to unpack .../67-python3-freetype_2.5.1-2_all.deb ... 96s Unpacking python3-freetype (2.5.1-2) ... 96s Selecting previously unselected package python3-rlpycairo. 96s Preparing to unpack .../68-python3-rlpycairo_0.3.0-4_all.deb ... 96s Unpacking python3-rlpycairo (0.3.0-4) ... 96s Selecting previously unselected package python3-reportlab. 96s Preparing to unpack .../69-python3-reportlab_4.4.9-1_all.deb ... 96s Unpacking python3-reportlab (4.4.9-1) ... 97s Selecting previously unselected package sgml-base. 97s Preparing to unpack .../70-sgml-base_1.31+nmu1_all.deb ... 97s Unpacking sgml-base (1.31+nmu1) ... 97s Selecting previously unselected package xml-core. 97s Preparing to unpack .../71-xml-core_0.19build1_all.deb ... 97s Unpacking xml-core (0.19build1) ... 97s Selecting previously unselected package w3c-sgml-lib. 97s Preparing to unpack .../72-w3c-sgml-lib_1.3-3build1_all.deb ... 97s Unpacking w3c-sgml-lib (1.3-3build1) ... 97s Selecting previously unselected package python3-biopython. 97s Preparing to unpack .../73-python3-biopython_1.86+dfsg-1_amd64.deb ... 97s Unpacking python3-biopython (1.86+dfsg-1) ... 97s Selecting previously unselected package python-matplotlib-data. 97s Preparing to unpack .../74-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 97s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 97s Selecting previously unselected package python3-contourpy. 97s Preparing to unpack .../75-python3-contourpy_1.3.3-1_amd64.deb ... 97s Unpacking python3-contourpy (1.3.3-1) ... 97s Selecting previously unselected package python3-cycler. 97s Preparing to unpack .../76-python3-cycler_0.12.1-2_all.deb ... 97s Unpacking python3-cycler (0.12.1-2) ... 97s Selecting previously unselected package python3-brotli. 97s Preparing to unpack .../77-python3-brotli_1.1.0-2build6_amd64.deb ... 97s Unpacking python3-brotli (1.1.0-2build6) ... 97s Selecting previously unselected package python3-lxml:amd64. 97s Preparing to unpack .../78-python3-lxml_6.0.2-1_amd64.deb ... 97s Unpacking python3-lxml:amd64 (6.0.2-1) ... 97s Selecting previously unselected package python3-lz4. 97s Preparing to unpack .../79-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 97s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 97s Selecting previously unselected package python3-mpmath. 97s Preparing to unpack .../80-python3-mpmath_1.3.0-2_all.deb ... 97s Unpacking python3-mpmath (1.3.0-2) ... 97s Selecting previously unselected package python3-sympy. 97s Preparing to unpack .../81-python3-sympy_1.14.0-2_all.deb ... 97s Unpacking python3-sympy (1.14.0-2) ... 97s Selecting previously unselected package python3-ufolib2. 97s Preparing to unpack .../82-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 97s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 97s Selecting previously unselected package python3-unicodedata2. 97s Preparing to unpack .../83-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 97s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 97s Selecting previously unselected package python3-zopfli. 97s Preparing to unpack .../84-python3-zopfli_0.4.0-1_amd64.deb ... 97s Unpacking python3-zopfli (0.4.0-1) ... 97s Selecting previously unselected package unicode-data. 97s Preparing to unpack .../85-unicode-data_16.0.0-1build1_all.deb ... 97s Unpacking unicode-data (16.0.0-1build1) ... 97s Selecting previously unselected package python3-fonttools. 97s Preparing to unpack .../86-python3-fonttools_4.61.1-3_amd64.deb ... 97s Unpacking python3-fonttools (4.61.1-3) ... 97s Selecting previously unselected package python3-kiwisolver. 97s Preparing to unpack .../87-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 97s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 97s Selecting previously unselected package python3-matplotlib. 97s Preparing to unpack .../88-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 97s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 97s Selecting previously unselected package python3-pytz. 97s Preparing to unpack .../89-python3-pytz_2025.2-5_all.deb ... 97s Unpacking python3-pytz (2025.2-5) ... 97s Selecting previously unselected package python3-pandas-lib:amd64. 97s Preparing to unpack .../90-python3-pandas-lib_2.3.3+dfsg-3_amd64.deb ... 97s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 98s Selecting previously unselected package python3-pandas. 98s Preparing to unpack .../91-python3-pandas_2.3.3+dfsg-3_all.deb ... 98s Unpacking python3-pandas (2.3.3+dfsg-3) ... 98s Selecting previously unselected package python3-seaborn. 98s Preparing to unpack .../92-python3-seaborn_0.13.2-6_all.deb ... 98s Unpacking python3-seaborn (0.13.2-6) ... 98s Selecting previously unselected package python3-pysam. 98s Preparing to unpack .../93-python3-pysam_0.23.3+ds-2_amd64.deb ... 98s Unpacking python3-pysam (0.23.3+ds-2) ... 98s Selecting previously unselected package mcaller. 98s Preparing to unpack .../94-mcaller_1.0.3+git20210624.b415090-3build1_all.deb ... 98s Unpacking mcaller (1.0.3+git20210624.b415090-3build1) ... 98s Setting up libhtscodecs2:amd64 (1.6.1-2build1) ... 98s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 98s Setting up liblcms2-2:amd64 (2.17-1) ... 98s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 98s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 98s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 98s Setting up libxrender1:amd64 (1:0.9.12-1) ... 98s Setting up python3-joblib (1.5.2-1) ... 98s Setting up python3-lz4 (4.4.5+dfsg-1) ... 98s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 98s Setting up python3-charset-normalizer (3.4.4-2) ... 98s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 98s Setting up fonts-lyx (2.5.0~RC2-3) ... 98s Setting up python3-threadpoolctl (3.1.0-1build1) ... 98s Setting up x11-common (1:7.7+24ubuntu1) ... 98s Setting up libdeflate0:amd64 (1.23-2) ... 98s Setting up libqhull-r8.0:amd64 (2020.2-8) ... 98s Setting up python3-pytz (2025.2-5) ... 99s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 99s Setting up libgomp1:amd64 (15.2.0-11ubuntu1) ... 99s Setting up python3-freetype (2.5.1-2) ... 99s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 99s Setting up libaec0:amd64 (1.1.4-2) ... 99s Setting up unicode-data (16.0.0-1build1) ... 99s Setting up python3-decorator (5.2.1-2) ... 99s Setting up libfontenc1:amd64 (1:1.1.8-1build2) ... 99s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 99s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 99s Setting up libzopfli1 (1.0.3-3) ... 99s Setting up python3-brotli (1.1.0-2build6) ... 99s Setting up liblzf1:amd64 (3.6-4build1) ... 99s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 99s Setting up python3-cycler (0.12.1-2) ... 99s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 99s Setting up fonts-dejavu-mono (2.37-8build1) ... 99s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 99s Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 99s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 99s Setting up fonts-dejavu-core (2.37-8build1) ... 99s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 99s Setting up libgfortran5:amd64 (15.2.0-11ubuntu1) ... 99s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 99s Setting up fonts-dejavu-extra (2.37-8build1) ... 99s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 99s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 99s Setting up libopenjp2-7:amd64 (2.5.4-1) ... 99s Setting up libharfbuzz0b:amd64 (12.3.0-4) ... 99s Setting up sgml-base (1.31+nmu1) ... 99s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 99s Setting up python3-mpmath (1.3.0-2) ... 99s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 99s Setting up libwebpmux3:amd64 (1.5.0-0.1build1) ... 99s Setting up libsz2:amd64 (1.1.4-2) ... 99s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 99s Setting up python3-sympy (1.14.0-2) ... 103s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 103s return p.returncode 103s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 103s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 103s Setting up python3-pysam (0.23.3+ds-2) ... 103s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 103s Setting up libwebpdemux2:amd64 (1.5.0-0.1build1) ... 103s Setting up xfonts-utils (1:7.7+7build1) ... 103s Setting up python3-zopfli (0.4.0-1) ... 103s Setting up libraqm0:amd64 (0.10.3-1) ... 103s Setting up python3-numpy (1:2.3.5+ds-3) ... 104s Setting up libhdf5-310:amd64 (1.14.6+repack-2) ... 104s Setting up python3-lxml:amd64 (6.0.2-1) ... 104s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 104s Setting up xml-core (0.19build1) ... 105s Setting up python3-contourpy (1.3.3-1) ... 105s Setting up libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 105s Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 105s Setting up libxft2:amd64 (2.3.6-1build2) ... 105s Setting up python3-scipy (1.16.3-3) ... 107s Setting up libtk8.6:amd64 (8.6.17-1) ... 107s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 107s Setting up python3-sklearn-lib:amd64 (1.7.2+dfsg-4) ... 107s Setting up python3-h5py-serial (3.15.1-4) ... 107s Setting up fonts-urw-base35 (20200910-8build1) ... 107s Setting up libcairo2:amd64 (1.18.4-3) ... 107s Setting up python3.13-tk (3.13.11-1) ... 107s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 107s Setting up python3-pandas (2.3.3+dfsg-3) ... 110s Setting up python3-h5py (3.15.1-4) ... 110s Setting up python3-sklearn (1.7.2+dfsg-4) ... 112s Setting up python3.14-tk (3.14.2-1) ... 112s Setting up python3-cairo (1.27.0-2build1) ... 112s Setting up python3-tk (3.14.2-1) ... 112s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 112s Setting up python3-rlpycairo (0.3.0-4) ... 112s Setting up python3-reportlab (4.4.9-1) ... 112s Setting up python3-fonttools (4.61.1-3) ... 113s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 113s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 114s Setting up python3-seaborn (0.13.2-6) ... 114s Processing triggers for man-db (2.13.1-1) ... 115s Processing triggers for libc-bin (2.42-2ubuntu4) ... 115s Processing triggers for sgml-base (1.31+nmu1) ... 115s Setting up w3c-sgml-lib (1.3-3build1) ... 130s Setting up python3-biopython (1.86+dfsg-1) ... 131s Setting up mcaller (1.0.3+git20210624.b415090-3build1) ... 131s autopkgtest [11:43:17]: test run-unit-test: [----------------------- 132s testdata/ 132s 1 contigs 132s 1 threads 132s thread finished processing...: 132s 35 observations 132s 35 positions 132s 0 regions with multiple methylated bases 132s 0 observations with skips included 132s 8 observations with too many skips 132s Finished extracting signals 133s testdata/ 133s 1 contigs 133s 1 threads 133s thread finished processing...: 133s 9 observations 133s 9 positions 133s 0 regions with multiple methylated bases 133s 0 observations with skips included 133s 2 observations with too many skips 133s Finished extracting signals 134s testdata/ 134s 1 contigs 134s 4 threads 135s Traceback (most recent call last): 135s File "/usr/bin/mCaller", line 187, in 135s main() 135s ~~~~^^ 135s File "/usr/bin/mCaller", line 183, in main 135s distribute_threads(args.positions,args.motif,args.tsv,read2qual,args.reference,num_refs,base,mod,args.threads,args.num_variables, 135s ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 135s args.train,modelfile,args.skip_thresh,args.qual_thresh,args.classifier,training_tsv,args.plot_training) 135s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 135s File "/usr/bin/mCaller", line 70, in distribute_threads 135s p.start() 135s ~~~~~~~^^ 135s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 135s self._popen = self._Popen(self) 135s ~~~~~~~~~~~^^^^^^ 135s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 135s return _default_context.get_context().Process._Popen(process_obj) 135s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 135s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 135s return Popen(process_obj) 135s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 135s super().__init__(process_obj) 135s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 135s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 135s self._launch(process_obj) 135s ~~~~~~~~~~~~^^^^^^^^^^^^^ 135s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 47, in _launch 135s reduction.dump(process_obj, buf) 135s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ 135s File "/usr/lib/python3.14/multiprocessing/reduction.py", line 60, in dump 135s ForkingPickler(file, protocol).dump(obj) 135s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ 135s _pickle.PicklingError: Can't pickle local object .worker at 0x75d1bf50d010> 135s when serializing dict item '_target' 135s when serializing multiprocessing.context.Process state 135s when serializing multiprocessing.context.Process object 135s autopkgtest [11:43:21]: test run-unit-test: -----------------------] 136s run-unit-test FAIL non-zero exit status 1 136s autopkgtest [11:43:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 136s autopkgtest [11:43:22]: @@@@@@@@@@@@@@@@@@@@ summary 136s run-unit-test FAIL non-zero exit status 1