0s autopkgtest [20:27:59]: starting date and time: 2026-02-06 20:27:59+0000 0s autopkgtest [20:27:59]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:27:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hz1ie0gd/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade libvcflib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-39.secgroup --name adt-resolute-amd64-libvcflib-20260206-202759-juju-7f2275-prod-proposed-migration-environment-15-0da7f455-84bf-4477-8362-046a53646bc5 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-libvcflib-20260206-202759-juju-7f2275-prod-proposed-migration-environment-15-0da7f455-84bf-4477-8362-046a53646bc5 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 77s autopkgtest [20:29:16]: testbed dpkg architecture: amd64 77s autopkgtest [20:29:16]: testbed apt version: 3.1.14 78s autopkgtest [20:29:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 78s autopkgtest [20:29:17]: testbed release detected to be: None 78s autopkgtest [20:29:17]: updating testbed package index (apt update) 79s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 79s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 79s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [199 kB] 79s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB] 79s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 79s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1528 kB] 79s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [265 kB] 79s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB] 79s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 79s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 79s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 80s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 80s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1432 kB] 80s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 80s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 80s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 80s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 80s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 81s Fetched 4492 kB in 1s (3420 kB/s) 81s Reading package lists... 82s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 82s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 83s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 83s The following packages will be upgraded: 83s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 83s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 83s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 83s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 83s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 83s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 14.4 MB of archives. 83s After this operation, 270 kB disk space will be freed. 83s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 84s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 84s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 84s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 84s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 84s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 84s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 84s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 84s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 84s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 84s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 84s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 84s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 84s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 84s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 84s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 84s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 84s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 84s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 84s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 84s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 84s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 84s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 84s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 84s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 84s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 84s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 84s dpkg-preconfigure: unable to re-open stdin: No such file or directory 84s Fetched 14.4 MB in 1s (25.2 MB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 84s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 84s Setting up findutils (4.10.0-3build2) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 84s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 84s Setting up sed (4.9-2build3) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 85s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 85s Setting up tar (1.35+dfsg-3.1build2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 85s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 85s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 85s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 85s Setting up libc6:amd64 (2.42-2ubuntu5) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 85s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 85s Setting up libc-bin (2.42-2ubuntu5) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 85s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 85s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 85s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 85s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 85s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 85s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 85s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 85s Unpacking apt (3.1.15) over (3.1.14) ... 85s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 85s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 85s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 85s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 86s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 86s Unpacking less (668-1build1) over (668-1) ... 86s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 86s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 86s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 86s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 86s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 86s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 86s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 86s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 86s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 86s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 86s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 86s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 86s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 86s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 86s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 86s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 86s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 86s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 86s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 86s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 86s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 86s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 86s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 86s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 86s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 86s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 86s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 86s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 86s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 86s Unpacking patch (2.8-2build1) over (2.8-2) ... 86s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 86s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 86s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 86s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 86s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 86s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 86s Setting up libnpth0t64:amd64 (1.8-3build1) ... 86s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 86s Setting up libgpm2:amd64 (1.20.7-12build1) ... 86s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 86s Setting up libsensors-config (1:3.6.2-2build1) ... 86s Setting up less (668-1build1) ... 86s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 86s amd64-microcode: microcode will be updated at next boot 86s Setting up locales (2.42-2ubuntu5) ... 87s Generating locales (this might take a while)... 88s en_US.UTF-8... done 88s Generation complete. 88s Setting up pollinate (4.33-4ubuntu5) ... 98s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 98s Setting up patch (2.8-2build1) ... 98s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 98s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 98s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 98s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 98s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 98s Setting up mawk (1.3.4.20260129-1) ... 98s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 98s Setting up libdrm-common (2.4.131-1) ... 98s Setting up python3-referencing (0.36.2-1ubuntu2) ... 98s Setting up apt (3.1.15) ... 99s Setting up python3-markdown-it (3.0.0-3build1) ... 99s Setting up libdrm2:amd64 (2.4.131-1) ... 99s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 99s Processing triggers for libc-bin (2.42-2ubuntu5) ... 99s Processing triggers for systemd (259-1ubuntu3) ... 99s Processing triggers for man-db (2.13.1-1) ... 100s Processing triggers for install-info (7.2-5) ... 100s Processing triggers for initramfs-tools (0.150ubuntu7) ... 101s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 105s autopkgtest [20:29:44]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Solving dependencies... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s autopkgtest [20:29:46]: rebooting testbed after setup commands that affected boot 135s autopkgtest [20:30:14]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 137s autopkgtest [20:30:16]: @@@@@@@@@@@@@@@@@@@@ apt-source libvcflib 139s Get:1 http://ftpmaster.internal/ubuntu resolute/universe libvcflib 1.0.12+dfsg-1 (dsc) [2408 B] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/universe libvcflib 1.0.12+dfsg-1 (tar) [9047 kB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/universe libvcflib 1.0.12+dfsg-1 (diff) [74.9 kB] 139s gpgv: Signature made Sun Feb 16 13:58:40 2025 UTC 139s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 139s gpgv: issuer "tille@debian.org" 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./libvcflib_1.0.12+dfsg-1.dsc: no acceptable signature found 140s autopkgtest [20:30:19]: testing package libvcflib version 1.0.12+dfsg-1 140s autopkgtest [20:30:19]: build not needed 144s autopkgtest [20:30:23]: test command1: preparing testbed 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s The following NEW packages will be installed: 144s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 144s libcairo2 libdatrie1 libdeflate0 libdisorder0 libfastahack0 libfontconfig1 144s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 144s libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 144s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 144s libsharpyuv0 libsm6 libsmithwaterman0 libtabixpp0t64 libtcl8.6 libthai-data 144s libthai0 libtiff6 libtk8.6 libvcflib-tools libvcflib2 libwebp7 libwfa2-0 144s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 144s r-cran-cli r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue 144s r-cran-gridbase r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice 144s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 144s r-cran-mgcv r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 144s r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 144s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 144s r-cran-withr unzip x11-common xdg-utils zip 144s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 73.3 MB of archives. 144s After this operation, 141 MB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 144s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 144s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 144s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 144s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 144s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 144s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 144s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 144s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 144s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 144s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 144s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 144s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 144s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4build2 [4896 B] 144s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfastahack0 amd64 1.0.0+dfsg-11build1 [28.2 kB] 144s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 144s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 144s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 144s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 144s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2build1 [108 kB] 144s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 144s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 144s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 144s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 144s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 144s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 144s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 144s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 144s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 144s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 144s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 144s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 144s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 144s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 144s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 144s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 144s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-12build1 [39.5 kB] 144s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtabixpp0t64 amd64 1.1.2-2.1build2 [10.8 kB] 144s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 144s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 144s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 144s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 144s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 144s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 145s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 145s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwfa2-0 amd64 2.3.3-4build1 [64.8 kB] 145s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvcflib2 amd64 1.0.12+dfsg-1 [263 kB] 145s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 145s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 145s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 145s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 145s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 145s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 145s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 145s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 145s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 145s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 145s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 145s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 145s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 145s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 146s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 146s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 146s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 146s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 146s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 146s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 146s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 146s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 146s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 146s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 146s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 146s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 146s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 146s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 146s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 146s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 146s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 146s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 146s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 146s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 146s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 146s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridbase all 0.4-7-5build2 [162 kB] 146s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvcflib-tools amd64 1.0.12+dfsg-1 [670 kB] 146s Preconfiguring packages ... 147s Fetched 73.3 MB in 2s (32.6 MB/s) 147s Selecting previously unselected package fonts-dejavu-mono. 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 147s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8build1_all.deb ... 147s Unpacking fonts-dejavu-mono (2.37-8build1) ... 147s Selecting previously unselected package fonts-dejavu-core. 147s Preparing to unpack .../01-fonts-dejavu-core_2.37-8build1_all.deb ... 147s Unpacking fonts-dejavu-core (2.37-8build1) ... 147s Selecting previously unselected package fontconfig-config. 147s Preparing to unpack .../02-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 147s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 147s Selecting previously unselected package libfontconfig1:amd64. 147s Preparing to unpack .../03-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 147s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 147s Selecting previously unselected package fontconfig. 147s Preparing to unpack .../04-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 147s Unpacking fontconfig (2.17.1-3ubuntu1) ... 147s Selecting previously unselected package libblas3:amd64. 147s Preparing to unpack .../05-libblas3_3.12.1-7ubuntu1_amd64.deb ... 147s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 147s Selecting previously unselected package libpixman-1-0:amd64. 147s Preparing to unpack .../06-libpixman-1-0_0.46.4-1_amd64.deb ... 147s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 147s Selecting previously unselected package libxcb-render0:amd64. 147s Preparing to unpack .../07-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 147s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 147s Selecting previously unselected package libxcb-shm0:amd64. 147s Preparing to unpack .../08-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 147s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 147s Selecting previously unselected package libxrender1:amd64. 147s Preparing to unpack .../09-libxrender1_1%3a0.9.12-1_amd64.deb ... 147s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 147s Selecting previously unselected package libcairo2:amd64. 147s Preparing to unpack .../10-libcairo2_1.18.4-3_amd64.deb ... 147s Unpacking libcairo2:amd64 (1.18.4-3) ... 147s Selecting previously unselected package libdatrie1:amd64. 147s Preparing to unpack .../11-libdatrie1_0.2.14-1_amd64.deb ... 147s Unpacking libdatrie1:amd64 (0.2.14-1) ... 147s Selecting previously unselected package libdeflate0:amd64. 147s Preparing to unpack .../12-libdeflate0_1.23-2_amd64.deb ... 147s Unpacking libdeflate0:amd64 (1.23-2) ... 147s Selecting previously unselected package libdisorder0:amd64. 147s Preparing to unpack .../13-libdisorder0_0.0.2+git20130809.8062ee1-4build2_amd64.deb ... 147s Unpacking libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4build2) ... 147s Selecting previously unselected package libfastahack0:amd64. 147s Preparing to unpack .../14-libfastahack0_1.0.0+dfsg-11build1_amd64.deb ... 147s Unpacking libfastahack0:amd64 (1.0.0+dfsg-11build1) ... 147s Selecting previously unselected package libgfortran5:amd64. 147s Preparing to unpack .../15-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 147s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 147s Selecting previously unselected package libgomp1:amd64. 147s Preparing to unpack .../16-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 147s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 147s Selecting previously unselected package libgraphite2-3:amd64. 147s Preparing to unpack .../17-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 147s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 147s Selecting previously unselected package libharfbuzz0b:amd64. 147s Preparing to unpack .../18-libharfbuzz0b_12.3.2-1_amd64.deb ... 147s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 147s Selecting previously unselected package libhtscodecs2:amd64. 147s Preparing to unpack .../19-libhtscodecs2_1.6.1-2build1_amd64.deb ... 147s Unpacking libhtscodecs2:amd64 (1.6.1-2build1) ... 147s Selecting previously unselected package libhts3t64:amd64. 147s Preparing to unpack .../20-libhts3t64_1.22.1+ds2-1_amd64.deb ... 147s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 147s Selecting previously unselected package x11-common. 147s Preparing to unpack .../21-x11-common_1%3a7.7+24ubuntu1_all.deb ... 147s Unpacking x11-common (1:7.7+24ubuntu1) ... 147s Selecting previously unselected package libice6:amd64. 147s Preparing to unpack .../22-libice6_2%3a1.1.1-1build1_amd64.deb ... 147s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 147s Selecting previously unselected package libjpeg-turbo8:amd64. 147s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 147s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 147s Selecting previously unselected package libjpeg8:amd64. 147s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_amd64.deb ... 147s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 147s Selecting previously unselected package liblapack3:amd64. 147s Preparing to unpack .../25-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 147s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 147s Selecting previously unselected package liblerc4:amd64. 147s Preparing to unpack .../26-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 147s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 147s Selecting previously unselected package libthai-data. 147s Preparing to unpack .../27-libthai-data_0.1.30-1_all.deb ... 147s Unpacking libthai-data (0.1.30-1) ... 147s Selecting previously unselected package libthai0:amd64. 147s Preparing to unpack .../28-libthai0_0.1.30-1_amd64.deb ... 147s Unpacking libthai0:amd64 (0.1.30-1) ... 147s Selecting previously unselected package libpango-1.0-0:amd64. 147s Preparing to unpack .../29-libpango-1.0-0_1.57.0-1_amd64.deb ... 147s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ... 147s Selecting previously unselected package libpangoft2-1.0-0:amd64. 147s Preparing to unpack .../30-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 147s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 147s Selecting previously unselected package libpangocairo-1.0-0:amd64. 147s Preparing to unpack .../31-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 147s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 147s Selecting previously unselected package libpaper2:amd64. 147s Preparing to unpack .../32-libpaper2_2.2.5-0.3build1_amd64.deb ... 147s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 147s Selecting previously unselected package libpaper-utils. 147s Preparing to unpack .../33-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 147s Unpacking libpaper-utils (2.2.5-0.3build1) ... 147s Selecting previously unselected package libsharpyuv0:amd64. 147s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 147s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 147s Selecting previously unselected package libsm6:amd64. 147s Preparing to unpack .../35-libsm6_2%3a1.2.6-1build1_amd64.deb ... 147s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 147s Selecting previously unselected package libsmithwaterman0:amd64. 147s Preparing to unpack .../36-libsmithwaterman0_0.0+git20160702.2610e25-12build1_amd64.deb ... 147s Unpacking libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12build1) ... 147s Selecting previously unselected package libtabixpp0t64:amd64. 147s Preparing to unpack .../37-libtabixpp0t64_1.1.2-2.1build2_amd64.deb ... 147s Unpacking libtabixpp0t64:amd64 (1.1.2-2.1build2) ... 147s Selecting previously unselected package libtcl8.6:amd64. 147s Preparing to unpack .../38-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 147s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 147s Selecting previously unselected package libjbig0:amd64. 147s Preparing to unpack .../39-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 147s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 147s Selecting previously unselected package libwebp7:amd64. 147s Preparing to unpack .../40-libwebp7_1.5.0-0.1build1_amd64.deb ... 147s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 147s Selecting previously unselected package libtiff6:amd64. 147s Preparing to unpack .../41-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 147s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 147s Selecting previously unselected package libxft2:amd64. 147s Preparing to unpack .../42-libxft2_2.3.6-1build2_amd64.deb ... 147s Unpacking libxft2:amd64 (2.3.6-1build2) ... 147s Selecting previously unselected package libxss1:amd64. 147s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build4_amd64.deb ... 147s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 147s Selecting previously unselected package libtk8.6:amd64. 147s Preparing to unpack .../44-libtk8.6_8.6.17-1_amd64.deb ... 147s Unpacking libtk8.6:amd64 (8.6.17-1) ... 147s Selecting previously unselected package libwfa2-0:amd64. 147s Preparing to unpack .../45-libwfa2-0_2.3.3-4build1_amd64.deb ... 147s Unpacking libwfa2-0:amd64 (2.3.3-4build1) ... 147s Selecting previously unselected package libvcflib2:amd64. 147s Preparing to unpack .../46-libvcflib2_1.0.12+dfsg-1_amd64.deb ... 147s Unpacking libvcflib2:amd64 (1.0.12+dfsg-1) ... 147s Selecting previously unselected package zip. 147s Preparing to unpack .../47-zip_3.0-15ubuntu2_amd64.deb ... 147s Unpacking zip (3.0-15ubuntu2) ... 148s Selecting previously unselected package unzip. 148s Preparing to unpack .../48-unzip_6.0-29ubuntu1_amd64.deb ... 148s Unpacking unzip (6.0-29ubuntu1) ... 148s Selecting previously unselected package xdg-utils. 148s Preparing to unpack .../49-xdg-utils_1.2.1-2ubuntu2_all.deb ... 148s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 148s Selecting previously unselected package libxt6t64:amd64. 148s Preparing to unpack .../50-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 148s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 148s Selecting previously unselected package r-base-core. 148s Preparing to unpack .../51-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 148s Unpacking r-base-core (4.5.2-1ubuntu2) ... 148s Selecting previously unselected package r-cran-littler. 148s Preparing to unpack .../52-r-cran-littler_0.3.22-1_amd64.deb ... 148s Unpacking r-cran-littler (0.3.22-1) ... 148s Selecting previously unselected package r-cran-pkgkitten. 148s Preparing to unpack .../53-r-cran-pkgkitten_0.2.4-1_all.deb ... 148s Unpacking r-cran-pkgkitten (0.2.4-1) ... 148s Selecting previously unselected package r-cran-rcpp. 148s Preparing to unpack .../54-r-cran-rcpp_1.1.0-1_amd64.deb ... 148s Unpacking r-cran-rcpp (1.1.0-1) ... 148s Selecting previously unselected package r-cran-plyr. 148s Preparing to unpack .../55-r-cran-plyr_1.8.9-1_amd64.deb ... 148s Unpacking r-cran-plyr (1.8.9-1) ... 148s Selecting previously unselected package r-cran-cli. 148s Preparing to unpack .../56-r-cran-cli_3.6.4-1_amd64.deb ... 148s Unpacking r-cran-cli (3.6.4-1) ... 148s Selecting previously unselected package r-cran-glue. 148s Preparing to unpack .../57-r-cran-glue_1.8.0-1_amd64.deb ... 148s Unpacking r-cran-glue (1.8.0-1) ... 148s Selecting previously unselected package r-cran-rlang. 148s Preparing to unpack .../58-r-cran-rlang_1.1.5-3_amd64.deb ... 148s Unpacking r-cran-rlang (1.1.5-3) ... 148s Selecting previously unselected package r-cran-lifecycle. 148s Preparing to unpack .../59-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 148s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 148s Selecting previously unselected package r-cran-gtable. 148s Preparing to unpack .../60-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 148s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 148s Selecting previously unselected package r-cran-isoband. 148s Preparing to unpack .../61-r-cran-isoband_0.2.7-1_amd64.deb ... 148s Unpacking r-cran-isoband (0.2.7-1) ... 148s Selecting previously unselected package r-cran-mass. 148s Preparing to unpack .../62-r-cran-mass_7.3-65-1_amd64.deb ... 148s Unpacking r-cran-mass (7.3-65-1) ... 148s Selecting previously unselected package r-cran-lattice. 148s Preparing to unpack .../63-r-cran-lattice_0.22-7-1_amd64.deb ... 148s Unpacking r-cran-lattice (0.22-7-1) ... 148s Selecting previously unselected package r-cran-nlme. 148s Preparing to unpack .../64-r-cran-nlme_3.1.168-1_amd64.deb ... 148s Unpacking r-cran-nlme (3.1.168-1) ... 148s Selecting previously unselected package r-cran-matrix. 148s Preparing to unpack .../65-r-cran-matrix_1.7-4-1_amd64.deb ... 148s Unpacking r-cran-matrix (1.7-4-1) ... 148s Selecting previously unselected package r-cran-mgcv. 148s Preparing to unpack .../66-r-cran-mgcv_1.9-4-1_amd64.deb ... 148s Unpacking r-cran-mgcv (1.9-4-1) ... 148s Selecting previously unselected package r-cran-farver. 148s Preparing to unpack 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unselected package r-cran-fansi. 148s Preparing to unpack .../73-r-cran-fansi_1.0.6-2_amd64.deb ... 148s Unpacking r-cran-fansi (1.0.6-2) ... 148s Selecting previously unselected package r-cran-magrittr. 148s Preparing to unpack .../74-r-cran-magrittr_2.0.3-1_amd64.deb ... 148s Unpacking r-cran-magrittr (2.0.3-1) ... 148s Selecting previously unselected package r-cran-utf8. 148s Preparing to unpack .../75-r-cran-utf8_1.2.4-1_amd64.deb ... 148s Unpacking r-cran-utf8 (1.2.4-1) ... 148s Selecting previously unselected package r-cran-vctrs. 148s Preparing to unpack .../76-r-cran-vctrs_0.6.5-1_amd64.deb ... 148s Unpacking r-cran-vctrs (0.6.5-1) ... 148s Selecting previously unselected package r-cran-pillar. 148s Preparing to unpack .../77-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 148s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 148s Selecting previously unselected package r-cran-pkgconfig. 148s Preparing to unpack .../78-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 148s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 148s Selecting previously unselected package r-cran-tibble. 148s Preparing to unpack .../79-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 148s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 148s Selecting previously unselected package r-cran-withr. 148s Preparing to unpack .../80-r-cran-withr_3.0.2+dfsg-1_all.deb ... 148s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 148s Selecting previously unselected package r-cran-ggplot2. 148s Preparing to unpack .../81-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 148s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 148s Selecting previously unselected package r-cran-gridbase. 148s Preparing to unpack .../82-r-cran-gridbase_0.4-7-5build2_all.deb ... 148s Unpacking r-cran-gridbase (0.4-7-5build2) ... 148s Selecting previously unselected package libvcflib-tools. 148s Preparing to unpack .../83-libvcflib-tools_1.0.12+dfsg-1_amd64.deb ... 148s Unpacking libvcflib-tools (1.0.12+dfsg-1) ... 148s Setting up libhtscodecs2:amd64 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(3.0-15ubuntu2) ... 149s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 149s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 149s Setting up fonts-dejavu-mono (2.37-8build1) ... 149s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 149s Setting up fonts-dejavu-core (2.37-8build1) ... 149s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 149s Setting up libgfortran5:amd64 (15.2.0-12ubuntu1) ... 149s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 149s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 149s Setting up libharfbuzz0b:amd64 (12.3.2-1) ... 149s Setting up libthai-data (0.1.30-1) ... 149s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 149s Setting up libpaper2:amd64 (2.2.5-0.3build1) ... 149s Setting up xdg-utils (1.2.1-2ubuntu2) ... 149s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 149s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 149s Setting up libice6:amd64 (2:1.1.1-1build1) ... 149s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 149s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 149s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 149s Setting up libpaper-utils (2.2.5-0.3build1) ... 149s Setting up libthai0:amd64 (0.1.30-1) ... 149s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 149s Setting up libtabixpp0t64:amd64 (1.1.2-2.1build2) ... 149s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 149s Setting up libsm6:amd64 (2:1.2.6-1build1) ... 149s Setting up fontconfig (2.17.1-3ubuntu1) ... 151s Regenerating fonts cache... done. 151s Setting up libxft2:amd64 (2.3.6-1build2) ... 151s Setting up libtk8.6:amd64 (8.6.17-1) ... 151s Setting up libpango-1.0-0:amd64 (1.57.0-1) ... 151s Setting up libcairo2:amd64 (1.18.4-3) ... 151s Setting up libvcflib2:amd64 (1.0.12+dfsg-1) ... 151s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... 151s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ... 151s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ... 151s Setting up r-base-core (4.5.2-1ubuntu2) ... 151s Creating config file /etc/R/Renviron with new version 151s Setting up r-cran-labeling (0.4.3-1) ... 151s Setting up r-cran-lattice (0.22-7-1) ... 151s Setting up r-cran-nlme (3.1.168-1) ... 151s Setting up r-cran-farver (2.1.2-1) ... 151s Setting up r-cran-viridislite (0.4.2-2) ... 151s Setting up r-cran-r6 (2.6.1-1) ... 151s Setting up r-cran-pkgkitten (0.2.4-1) ... 151s Setting up r-cran-magrittr (2.0.3-1) ... 151s Setting up r-cran-littler (0.3.22-1) ... 151s Setting up r-cran-rcpp (1.1.0-1) ... 151s Setting up r-cran-rlang (1.1.5-3) ... 151s Setting up r-cran-gridbase (0.4-7-5build2) ... 151s Setting up r-cran-withr (3.0.2+dfsg-1) ... 151s Setting up r-cran-fansi (1.0.6-2) ... 151s Setting up r-cran-mass (7.3-65-1) ... 151s Setting up r-cran-glue (1.8.0-1) ... 151s Setting up r-cran-cli (3.6.4-1) ... 151s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 151s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 151s Setting up r-cran-utf8 (1.2.4-1) ... 151s Setting up r-cran-plyr (1.8.9-1) ... 151s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 151s Setting up r-cran-isoband (0.2.7-1) ... 151s Setting up r-cran-scales (1.4.0-1) ... 151s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 151s Setting up r-cran-matrix (1.7-4-1) ... 151s Setting up r-cran-mgcv (1.9-4-1) ... 151s Setting up r-cran-vctrs (0.6.5-1) ... 151s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 151s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 151s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 151s Setting up libvcflib-tools (1.0.12+dfsg-1) ... 151s Processing triggers for install-info (7.2-5) ... 151s Processing triggers for libc-bin (2.42-2ubuntu5) ... 151s Processing triggers for man-db (2.13.1-1) ... 153s autopkgtest [20:30:32]: test command1: vcffilter -f 'AC > 10' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 1471 153s autopkgtest [20:30:32]: test command1: [----------------------- 157s 1471 157s autopkgtest [20:30:36]: test command1: -----------------------] 158s autopkgtest [20:30:37]: test command1: - - - - - - - - - - results - - - - - - - - - - 158s command1 PASS 158s autopkgtest [20:30:37]: test command2: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [20:30:38]: test command2: vcffilter -f 'AC > 100' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 748 159s autopkgtest [20:30:38]: test command2: [----------------------- 163s 748 163s autopkgtest [20:30:42]: test command2: -----------------------] 164s command2 PASS 164s autopkgtest [20:30:43]: test command2: - - - - - - - - - - results - - - - - - - - - - 164s autopkgtest [20:30:43]: @@@@@@@@@@@@@@@@@@@@ summary 164s command1 PASS 164s command2 PASS