0s autopkgtest [20:19:50]: starting date and time: 2026-02-06 20:19:50+0000 0s autopkgtest [20:19:50]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:19:50]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e_plipsn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade libssw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-27.secgroup --name adt-resolute-amd64-libssw-20260206-201950-juju-7f2275-prod-proposed-migration-environment-15-f7726268-e9b6-4616-a27e-9f65f15e844c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-libssw-20260206-201950-juju-7f2275-prod-proposed-migration-environment-15-f7726268-e9b6-4616-a27e-9f65f15e844c from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 70s autopkgtest [20:21:00]: testbed dpkg architecture: amd64 70s autopkgtest [20:21:00]: testbed apt version: 3.1.14 70s autopkgtest [20:21:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s autopkgtest [20:21:00]: testbed release detected to be: None 71s autopkgtest [20:21:01]: updating testbed package index (apt update) 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 72s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB] 72s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1528 kB] 72s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [199 kB] 72s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 72s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB] 72s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [265 kB] 72s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 72s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 72s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 72s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 72s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 72s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1432 kB] 72s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 72s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 73s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 73s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 73s Fetched 4492 kB in 1s (4707 kB/s) 74s Reading package lists... 74s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 75s Reading package lists... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade... 75s The following packages will be upgraded: 75s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 75s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 75s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 75s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 75s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 75s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 14.4 MB of archives. 75s After this operation, 270 kB disk space will be freed. 75s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 75s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 76s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 76s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 76s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 76s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 76s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 76s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 76s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 76s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 76s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 76s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 76s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 76s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 76s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 76s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 76s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 76s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 76s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 76s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 76s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 76s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 76s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 76s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 76s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 76s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 76s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 76s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 76s dpkg-preconfigure: unable to re-open stdin: No such file or directory 76s Fetched 14.4 MB in 1s (15.9 MB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 77s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 77s Setting up findutils (4.10.0-3build2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 77s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 77s Setting up sed (4.9-2build3) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 77s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 77s Setting up tar (1.35+dfsg-3.1build2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 77s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 77s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Setting up libc6:amd64 (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 77s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Setting up libc-bin (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 77s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 77s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 77s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 77s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 78s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 78s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 78s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 78s Unpacking apt (3.1.15) over (3.1.14) ... 78s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 78s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 78s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 78s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 78s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 78s Unpacking less (668-1build1) over (668-1) ... 78s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 78s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 78s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 78s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 78s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 78s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 78s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 78s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 78s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 78s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 78s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 78s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 78s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 78s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 78s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 78s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 78s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 78s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 78s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 78s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 78s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 78s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 78s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 78s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 78s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 78s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 78s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 78s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 78s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 78s Unpacking patch (2.8-2build1) over (2.8-2) ... 78s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 78s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 79s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 79s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 79s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 79s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 79s Setting up libnpth0t64:amd64 (1.8-3build1) ... 79s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 79s Setting up libgpm2:amd64 (1.20.7-12build1) ... 79s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 79s Setting up libsensors-config (1:3.6.2-2build1) ... 79s Setting up less (668-1build1) ... 79s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 79s amd64-microcode: microcode will be updated at next boot 79s Setting up locales (2.42-2ubuntu5) ... 79s Generating locales (this might take a while)... 80s en_US.UTF-8... done 80s Generation complete. 80s Setting up pollinate (4.33-4ubuntu5) ... 90s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 90s Setting up patch (2.8-2build1) ... 90s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 90s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 90s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 90s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 90s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 90s Setting up mawk (1.3.4.20260129-1) ... 90s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 90s Setting up libdrm-common (2.4.131-1) ... 90s Setting up python3-referencing (0.36.2-1ubuntu2) ... 91s Setting up apt (3.1.15) ... 91s Setting up python3-markdown-it (3.0.0-3build1) ... 91s Setting up libdrm2:amd64 (2.4.131-1) ... 91s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 91s Processing triggers for libc-bin (2.42-2ubuntu5) ... 91s Processing triggers for systemd (259-1ubuntu3) ... 92s Processing triggers for man-db (2.13.1-1) ... 93s Processing triggers for install-info (7.2-5) ... 93s Processing triggers for initramfs-tools (0.150ubuntu7) ... 93s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 97s autopkgtest [20:21:27]: upgrading testbed (apt dist-upgrade and autopurge) 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Solving dependencies... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [20:21:29]: rebooting testbed after setup commands that affected boot 127s autopkgtest [20:21:57]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 130s autopkgtest [20:22:00]: @@@@@@@@@@@@@@@@@@@@ apt-source libssw 132s Get:1 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (dsc) [2509 B] 132s Get:2 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (tar) [12.3 MB] 132s Get:3 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (diff) [54.3 kB] 132s gpgv: Signature made Tue Jul 23 18:45:44 2024 UTC 132s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 132s gpgv: issuer "emollier@debian.org" 132s gpgv: Can't check signature: No public key 132s dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-15.dsc: no acceptable signature found 133s autopkgtest [20:22:03]: testing package libssw version 1.1-15 134s autopkgtest [20:22:04]: build not needed 136s autopkgtest [20:22:06]: test build-lib: preparing testbed 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Solving dependencies... 136s The following NEW packages will be installed: 136s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 136s g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 136s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libc-dev-bin libc6-dev 136s libcc1-0 libcrypt-dev libgcc-15-dev libgomp1 libhwasan0 libisl23 libitm1 136s liblsan0 libmpc3 libquadmath0 libssw-dev libssw0 libstdc++-15-dev libtsan2 136s libubsan1 linux-libc-dev rpcsvc-proto zlib1g-dev 136s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 75.2 MB of archives. 136s After this operation, 261 MB of additional disk space will be used. 136s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-dev-bin amd64 2.42-2ubuntu5 [23.3 kB] 136s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 136s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 136s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 136s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6-dev amd64 2.42-2ubuntu5 [2206 kB] 136s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 136s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 136s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 137s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 137s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 137s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 137s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 137s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 137s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 137s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 137s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 137s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 137s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 137s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 137s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 137s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 137s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 138s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 138s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 138s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 138s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 138s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 138s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 138s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 138s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 138s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 138s Get:32 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssw0 amd64 1.1-15 [22.5 kB] 138s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssw-dev amd64 1.1-15 [23.8 kB] 138s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 138s Fetched 75.2 MB in 2s (36.6 MB/s) 138s Selecting previously unselected package libc-dev-bin. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 138s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu5_amd64.deb ... 138s Unpacking libc-dev-bin (2.42-2ubuntu5) ... 138s Selecting previously unselected package linux-libc-dev:amd64. 138s Preparing to unpack .../01-linux-libc-dev_6.18.0-9.9_amd64.deb ... 138s Unpacking linux-libc-dev:amd64 (6.18.0-9.9) ... 138s Selecting previously unselected package libcrypt-dev:amd64. 138s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 138s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 138s Selecting previously unselected package rpcsvc-proto. 138s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 138s Unpacking rpcsvc-proto (1.4.3-1build1) ... 138s Selecting previously unselected package libc6-dev:amd64. 138s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu5_amd64.deb ... 138s Unpacking libc6-dev:amd64 (2.42-2ubuntu5) ... 139s Selecting previously unselected package libisl23:amd64. 139s Preparing to unpack .../05-libisl23_0.27-1build1_amd64.deb ... 139s Unpacking libisl23:amd64 (0.27-1build1) ... 139s Selecting previously unselected package libmpc3:amd64. 139s Preparing to unpack .../06-libmpc3_1.3.1-2_amd64.deb ... 139s Unpacking libmpc3:amd64 (1.3.1-2) ... 139s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 139s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package cpp-15. 139s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package cpp-x86-64-linux-gnu. 139s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 139s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 139s Selecting previously unselected package cpp. 139s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 139s Unpacking cpp (4:15.2.0-4ubuntu1) ... 139s Selecting previously unselected package libcc1-0:amd64. 139s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libgomp1:amd64. 139s Preparing to unpack .../12-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libitm1:amd64. 139s Preparing to unpack .../13-libitm1_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libasan8:amd64. 139s Preparing to unpack .../14-libasan8_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package liblsan0:amd64. 139s Preparing to unpack .../15-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libtsan2:amd64. 139s Preparing to unpack .../16-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libubsan1:amd64. 139s Preparing to unpack .../17-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libhwasan0:amd64. 139s Preparing to unpack .../18-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libquadmath0:amd64. 139s Preparing to unpack .../19-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package libgcc-15-dev:amd64. 139s Preparing to unpack .../20-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 139s Preparing to unpack .../21-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package gcc-15. 139s Preparing to unpack .../22-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package gcc-x86-64-linux-gnu. 139s Preparing to unpack .../23-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 139s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 139s Selecting previously unselected package gcc. 139s Preparing to unpack .../24-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 139s Unpacking gcc (4:15.2.0-4ubuntu1) ... 139s Selecting previously unselected package libstdc++-15-dev:amd64. 139s Preparing to unpack .../25-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package g++-15-x86-64-linux-gnu. 139s Preparing to unpack .../26-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package g++-15. 139s Preparing to unpack .../27-g++-15_15.2.0-12ubuntu1_amd64.deb ... 139s Unpacking g++-15 (15.2.0-12ubuntu1) ... 139s Selecting previously unselected package g++-x86-64-linux-gnu. 139s Preparing to unpack .../28-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 139s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 139s Selecting previously unselected package g++. 139s Preparing to unpack .../29-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 139s Unpacking g++ (4:15.2.0-4ubuntu1) ... 139s Selecting previously unselected package build-essential. 139s Preparing to unpack .../30-build-essential_12.12ubuntu2_amd64.deb ... 139s Unpacking build-essential (12.12ubuntu2) ... 140s Selecting previously unselected package libssw0:amd64. 140s Preparing to unpack .../31-libssw0_1.1-15_amd64.deb ... 140s Unpacking libssw0:amd64 (1.1-15) ... 140s Selecting previously unselected package libssw-dev:amd64. 140s Preparing to unpack .../32-libssw-dev_1.1-15_amd64.deb ... 140s Unpacking libssw-dev:amd64 (1.1-15) ... 140s Selecting previously unselected package zlib1g-dev:amd64. 140s Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 140s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 140s Setting up linux-libc-dev:amd64 (6.18.0-9.9) ... 140s Setting up libgomp1:amd64 (15.2.0-12ubuntu1) ... 140s Setting up rpcsvc-proto (1.4.3-1build1) ... 140s Setting up libquadmath0:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libmpc3:amd64 (1.3.1-2) ... 140s Setting up libubsan1:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libhwasan0:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ... 140s Setting up libasan8:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libtsan2:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libisl23:amd64 (0.27-1build1) ... 140s Setting up libc-dev-bin (2.42-2ubuntu5) ... 140s Setting up libssw0:amd64 (1.1-15) ... 140s Setting up libcc1-0:amd64 (15.2.0-12ubuntu1) ... 140s Setting up liblsan0:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libitm1:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 140s Setting up libssw-dev:amd64 (1.1-15) ... 140s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 140s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 140s Setting up cpp-15 (15.2.0-12ubuntu1) ... 140s Setting up libc6-dev:amd64 (2.42-2ubuntu5) ... 140s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 140s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 140s Setting up gcc-15 (15.2.0-12ubuntu1) ... 140s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 140s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 140s Setting up cpp (4:15.2.0-4ubuntu1) ... 140s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 140s Setting up gcc (4:15.2.0-4ubuntu1) ... 140s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 140s Setting up g++-15 (15.2.0-12ubuntu1) ... 140s Setting up g++ (4:15.2.0-4ubuntu1) ... 140s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 140s Setting up build-essential (12.12ubuntu2) ... 140s Processing triggers for man-db (2.13.1-1) ... 140s Processing triggers for libc-bin (2.42-2ubuntu5) ... 141s autopkgtest [20:22:11]: test build-lib: [----------------------- 141s optimal_alignment_score: 21 sub-optimal_alignment_score: 8 target_begin: 9 target_end: 22 query_begin: 1 query_end: 15 141s 141s Target: 9 CTGACCCGG-AAATC 22 141s ||||*||||*||||| 141s Query: 1 CTGAGCCGGTAAATC 15 141s 142s ===== SSW result ===== 142s Best Smith-Waterman score: 21 142s Next-best Smith-Waterman score: 8 142s Reference start: 8 142s Reference end: 21 142s Query start: 0 142s Query end: 14 142s Next-best reference end: 4 142s Number of mismatches: 2 142s Cigar: 4=1X4=1I5= 142s ====================== 142s autopkgtest [20:22:12]: test build-lib: -----------------------] 142s build-lib PASS 142s autopkgtest [20:22:12]: test build-lib: - - - - - - - - - - results - - - - - - - - - - 143s autopkgtest [20:22:13]: test build-lib-java: preparing testbed 161s Creating nova instance adt-resolute-amd64-libssw-20260206-201950-juju-7f2275-prod-proposed-migration-environment-15-f7726268-e9b6-4616-a27e-9f65f15e844c from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 234s autopkgtest [20:23:44]: testbed dpkg architecture: amd64 234s autopkgtest [20:23:44]: testbed apt version: 3.1.14 234s autopkgtest [20:23:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 235s autopkgtest [20:23:45]: testbed release detected to be: resolute 235s autopkgtest [20:23:45]: updating testbed package index (apt update) 235s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 236s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 236s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 236s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 236s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB] 236s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 236s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [199 kB] 236s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1528 kB] 236s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [265 kB] 236s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB] 236s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 236s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 236s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 236s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 236s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 236s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1432 kB] 236s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 236s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 236s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 236s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 237s Fetched 4492 kB in 1s (4110 kB/s) 238s Reading package lists... 238s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 238s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 238s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 238s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 239s Reading package lists... 239s Reading package lists... 239s Building dependency tree... 239s Reading state information... 239s Calculating upgrade... 239s The following packages will be upgraded: 239s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 239s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 239s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 239s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 239s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 239s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 239s Need to get 14.4 MB of archives. 239s After this operation, 270 kB disk space will be freed. 239s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 239s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 239s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 239s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 240s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 240s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 240s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 240s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 240s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 240s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 240s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 240s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 240s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 240s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 240s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 240s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 240s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 240s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 240s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 240s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 240s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 240s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 240s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 240s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 240s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 240s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 240s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 240s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 240s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 240s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 240s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 240s dpkg-preconfigure: unable to re-open stdin: No such file or directory 240s Fetched 14.4 MB in 1s (13.2 MB/s) 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 241s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 241s Setting up findutils (4.10.0-3build2) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 241s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 241s Setting up sed (4.9-2build3) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 241s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 241s Setting up tar (1.35+dfsg-3.1build2) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 241s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 241s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 241s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 241s Setting up libc6:amd64 (2.42-2ubuntu5) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 241s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 241s Setting up libc-bin (2.42-2ubuntu5) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 241s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 241s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 241s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 242s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 242s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 242s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 242s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 242s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 242s Unpacking apt (3.1.15) over (3.1.14) ... 242s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 242s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 242s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 242s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 242s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 242s Unpacking less (668-1build1) over (668-1) ... 242s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 242s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 242s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 242s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 242s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 242s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 242s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 242s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 242s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 242s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 242s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 242s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 242s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 242s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 242s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 242s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 242s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 242s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 242s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 242s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 242s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 242s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 242s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 242s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 242s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 242s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 243s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 243s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 243s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 243s Unpacking patch (2.8-2build1) over (2.8-2) ... 243s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 243s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 243s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 243s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 243s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 243s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 243s Setting up libnpth0t64:amd64 (1.8-3build1) ... 243s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 243s Setting up libgpm2:amd64 (1.20.7-12build1) ... 243s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 243s Setting up libsensors-config (1:3.6.2-2build1) ... 243s Setting up less (668-1build1) ... 243s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 243s amd64-microcode: microcode will be updated at next boot 243s Setting up locales (2.42-2ubuntu5) ... 243s Generating locales (this might take a while)... 244s en_US.UTF-8... done 244s Generation complete. 244s Setting up pollinate (4.33-4ubuntu5) ... 255s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 255s Setting up patch (2.8-2build1) ... 255s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 255s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 255s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 255s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 255s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 255s Setting up mawk (1.3.4.20260129-1) ... 255s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 255s Setting up libdrm-common (2.4.131-1) ... 255s Setting up python3-referencing (0.36.2-1ubuntu2) ... 255s Setting up apt (3.1.15) ... 255s Setting up python3-markdown-it (3.0.0-3build1) ... 255s Setting up libdrm2:amd64 (2.4.131-1) ... 255s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 255s Processing triggers for libc-bin (2.42-2ubuntu5) ... 255s Processing triggers for systemd (259-1ubuntu3) ... 256s Processing triggers for man-db (2.13.1-1) ... 257s Processing triggers for install-info (7.2-5) ... 257s Processing triggers for initramfs-tools (0.150ubuntu7) ... 257s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 261s autopkgtest [20:24:11]: upgrading testbed (apt dist-upgrade and autopurge) 262s Reading package lists... 262s Building dependency tree... 262s Reading state information... 262s Calculating upgrade... 262s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 263s Solving dependencies... 263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 263s autopkgtest [20:24:13]: rebooting testbed after setup commands that affected boot 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s Solving dependencies... 298s The following NEW packages will be installed: 298s ca-certificates-java default-jdk-headless default-jre-headless java-common 298s libjpeg-turbo8 libjpeg8 liblcms2-2 libpcsclite1 libssw-java 298s openjdk-21-jdk-headless openjdk-21-jre-headless 298s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 298s Need to get 130 MB of archives. 298s After this operation, 301 MB of additional disk space will be used. 298s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 ca-certificates-java all 20240118build1 [11.7 kB] 298s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 java-common all 0.76build1 [6956 B] 298s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 298s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 298s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 298s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcsclite1 amd64 2.4.1-1 [24.6 kB] 298s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 openjdk-21-jre-headless amd64 21.0.10+7-1 [46.5 MB] 299s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 default-jre-headless amd64 2:1.21-76build1 [3266 B] 299s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 openjdk-21-jdk-headless amd64 21.0.10+7-1 [83.0 MB] 300s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 default-jdk-headless amd64 2:1.21-76build1 [964 B] 300s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssw-java amd64 1.1-15 [18.9 kB] 300s Fetched 130 MB in 2s (72.6 MB/s) 300s Selecting previously unselected package ca-certificates-java. 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 300s Preparing to unpack .../00-ca-certificates-java_20240118build1_all.deb ... 300s Unpacking ca-certificates-java (20240118build1) ... 300s Selecting previously unselected package java-common. 300s Preparing to unpack .../01-java-common_0.76build1_all.deb ... 300s Unpacking java-common (0.76build1) ... 300s Selecting previously unselected package liblcms2-2:amd64. 300s Preparing to unpack .../02-liblcms2-2_2.17-1_amd64.deb ... 300s Unpacking liblcms2-2:amd64 (2.17-1) ... 300s Selecting previously unselected package libjpeg-turbo8:amd64. 300s Preparing to unpack .../03-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 300s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 300s Selecting previously unselected package libjpeg8:amd64. 300s Preparing to unpack .../04-libjpeg8_8c-2ubuntu11_amd64.deb ... 300s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 300s Selecting previously unselected package libpcsclite1:amd64. 300s Preparing to unpack .../05-libpcsclite1_2.4.1-1_amd64.deb ... 300s Unpacking libpcsclite1:amd64 (2.4.1-1) ... 300s Selecting previously unselected package openjdk-21-jre-headless:amd64. 300s Preparing to unpack .../06-openjdk-21-jre-headless_21.0.10+7-1_amd64.deb ... 300s Unpacking openjdk-21-jre-headless:amd64 (21.0.10+7-1) ... 301s Selecting previously unselected package default-jre-headless. 301s Preparing to unpack .../07-default-jre-headless_2%3a1.21-76build1_amd64.deb ... 301s Unpacking default-jre-headless (2:1.21-76build1) ... 301s Selecting previously unselected package openjdk-21-jdk-headless:amd64. 301s Preparing to unpack .../08-openjdk-21-jdk-headless_21.0.10+7-1_amd64.deb ... 301s Unpacking openjdk-21-jdk-headless:amd64 (21.0.10+7-1) ... 301s Selecting previously unselected package default-jdk-headless. 301s Preparing to unpack .../09-default-jdk-headless_2%3a1.21-76build1_amd64.deb ... 301s Unpacking default-jdk-headless (2:1.21-76build1) ... 301s Selecting previously unselected package libssw-java. 301s Preparing to unpack .../10-libssw-java_1.1-15_amd64.deb ... 301s Unpacking libssw-java (1.1-15) ... 301s Setting up liblcms2-2:amd64 (2.17-1) ... 301s Setting up java-common (0.76build1) ... 301s Setting up libssw-java (1.1-15) ... 301s Setting up libpcsclite1:amd64 (2.4.1-1) ... 301s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 301s Setting up ca-certificates-java (20240118build1) ... 301s No JRE found. Skipping Java certificates setup. 301s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 301s Setting up openjdk-21-jre-headless:amd64 (21.0.10+7-1) ... 301s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode 301s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 301s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 301s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 301s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 301s Processing triggers for libc-bin (2.42-2ubuntu5) ... 301s Processing triggers for man-db (2.13.1-1) ... 301s Processing triggers for ca-certificates-java (20240118build1) ... 302s Adding debian:ACCVRAIZ1.pem 302s Adding debian:AC_RAIZ_FNMT-RCM.pem 302s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 302s Adding debian:ANF_Secure_Server_Root_CA.pem 302s Adding debian:Actalis_Authentication_Root_CA.pem 302s Adding debian:AffirmTrust_Commercial.pem 302s Adding debian:AffirmTrust_Networking.pem 302s Adding debian:AffirmTrust_Premium.pem 302s Adding debian:AffirmTrust_Premium_ECC.pem 302s Adding debian:Amazon_Root_CA_1.pem 302s Adding debian:Amazon_Root_CA_2.pem 302s Adding debian:Amazon_Root_CA_3.pem 302s Adding debian:Amazon_Root_CA_4.pem 302s Adding debian:Atos_TrustedRoot_2011.pem 302s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 302s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 302s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 302s Adding debian:BJCA_Global_Root_CA1.pem 302s Adding debian:BJCA_Global_Root_CA2.pem 302s Adding debian:Baltimore_CyberTrust_Root.pem 302s Adding debian:Buypass_Class_2_Root_CA.pem 302s Adding debian:Buypass_Class_3_Root_CA.pem 302s Adding debian:CA_Disig_Root_R2.pem 302s Adding debian:CFCA_EV_ROOT.pem 302s Adding debian:COMODO_Certification_Authority.pem 302s Adding debian:COMODO_ECC_Certification_Authority.pem 302s Adding debian:COMODO_RSA_Certification_Authority.pem 302s Adding debian:Certainly_Root_E1.pem 302s Adding debian:Certainly_Root_R1.pem 302s Adding debian:Certigna.pem 302s Adding debian:Certigna_Root_CA.pem 302s Adding debian:Certum_EC-384_CA.pem 302s Adding debian:Certum_Trusted_Network_CA.pem 302s Adding debian:Certum_Trusted_Network_CA_2.pem 302s Adding debian:Certum_Trusted_Root_CA.pem 302s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 302s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 302s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 302s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 302s Adding debian:Comodo_AAA_Services_root.pem 302s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 302s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem 302s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 302s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem 302s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 302s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 302s Adding debian:DigiCert_Assured_ID_Root_CA.pem 302s Adding debian:DigiCert_Assured_ID_Root_G2.pem 302s Adding debian:DigiCert_Assured_ID_Root_G3.pem 302s Adding debian:DigiCert_Global_Root_CA.pem 302s Adding debian:DigiCert_Global_Root_G2.pem 302s Adding debian:DigiCert_Global_Root_G3.pem 302s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 302s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 302s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 302s Adding debian:DigiCert_Trusted_Root_G4.pem 302s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 302s Adding debian:Entrust_Root_Certification_Authority.pem 302s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 302s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 302s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem 302s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 302s Adding debian:GLOBALTRUST_2020.pem 302s Adding debian:GTS_Root_R1.pem 302s Adding debian:GTS_Root_R2.pem 302s Adding debian:GTS_Root_R3.pem 302s Adding debian:GTS_Root_R4.pem 302s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 302s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 302s Adding debian:GlobalSign_Root_CA.pem 302s Adding debian:GlobalSign_Root_CA_-_R3.pem 302s Adding debian:GlobalSign_Root_CA_-_R6.pem 302s Adding debian:GlobalSign_Root_E46.pem 302s Adding debian:GlobalSign_Root_R46.pem 302s Adding debian:Go_Daddy_Class_2_CA.pem 302s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 302s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 302s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 302s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 302s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 302s Adding debian:HiPKI_Root_CA_-_G1.pem 302s Adding debian:Hongkong_Post_Root_CA_3.pem 302s Adding debian:ISRG_Root_X1.pem 302s Adding debian:ISRG_Root_X2.pem 302s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 302s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 302s Adding debian:Izenpe.com.pem 302s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 302s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 302s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 302s Adding debian:NAVER_Global_Root_Certification_Authority.pem 302s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 302s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 302s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 302s Adding debian:QuoVadis_Root_CA_1_G3.pem 302s Adding debian:QuoVadis_Root_CA_2.pem 302s Adding debian:QuoVadis_Root_CA_2_G3.pem 302s Adding debian:QuoVadis_Root_CA_3.pem 302s Adding debian:QuoVadis_Root_CA_3_G3.pem 302s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 302s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 302s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 302s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 302s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 302s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 302s Adding debian:SZAFIR_ROOT_CA2.pem 302s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 302s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 302s Adding debian:SecureSign_Root_CA12.pem 302s Adding debian:SecureSign_Root_CA14.pem 302s Adding debian:SecureSign_Root_CA15.pem 302s Adding debian:SecureTrust_CA.pem 302s Adding debian:Secure_Global_CA.pem 302s Adding debian:Security_Communication_ECC_RootCA1.pem 302s Adding debian:Security_Communication_RootCA2.pem 302s Adding debian:Starfield_Class_2_CA.pem 302s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 302s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 302s Adding debian:SwissSign_Gold_CA_-_G2.pem 302s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 302s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 302s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 302s Adding debian:TWCA_CYBER_Root_CA.pem 302s Adding debian:TWCA_Global_Root_CA.pem 302s Adding debian:TWCA_Root_Certification_Authority.pem 302s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem 302s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem 302s Adding debian:TeliaSonera_Root_CA_v1.pem 302s Adding debian:Telia_Root_CA_v2.pem 302s Adding debian:TrustAsia_Global_Root_CA_G3.pem 302s Adding debian:TrustAsia_Global_Root_CA_G4.pem 302s Adding debian:Trustwave_Global_Certification_Authority.pem 302s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 302s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 302s Adding debian:TunTrust_Root_CA.pem 302s Adding debian:UCA_Extended_Validation_Root.pem 302s Adding debian:UCA_Global_G2_Root.pem 302s Adding debian:USERTrust_ECC_Certification_Authority.pem 302s Adding debian:USERTrust_RSA_Certification_Authority.pem 302s Adding debian:XRamp_Global_CA_Root.pem 302s Adding debian:certSIGN_ROOT_CA.pem 302s Adding debian:certSIGN_Root_CA_G2.pem 302s Adding debian:e-Szigno_Root_CA_2017.pem 302s Adding debian:ePKI_Root_Certification_Authority.pem 302s Adding debian:emSign_ECC_Root_CA_-_C3.pem 302s Adding debian:emSign_ECC_Root_CA_-_G3.pem 302s Adding debian:emSign_Root_CA_-_C1.pem 302s Adding debian:emSign_Root_CA_-_G1.pem 302s Adding debian:vTrus_ECC_Root_CA.pem 302s Adding debian:vTrus_Root_CA.pem 302s done. 302s Setting up openjdk-21-jdk-headless:amd64 (21.0.10+7-1) ... 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 302s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode 302s Setting up default-jre-headless (2:1.21-76build1) ... 302s Setting up default-jdk-headless (2:1.21-76build1) ... 304s autopkgtest [20:24:54]: test build-lib-java: [----------------------- 305s Aligning nucleotides 305s score1=21 score2=8 ref_begin1=8 ref_end1=21 read_begin1=0 read_end1=14 ref_end2=4 cigar=9M1I5M 305s autopkgtest [20:24:55]: test build-lib-java: -----------------------] 305s autopkgtest [20:24:55]: test build-lib-java: - - - - - - - - - - results - - - - - - - - - - 305s build-lib-java PASS 306s autopkgtest [20:24:56]: test run-example: preparing testbed 324s Creating nova instance adt-resolute-amd64-libssw-20260206-201950-juju-7f2275-prod-proposed-migration-environment-15-f7726268-e9b6-4616-a27e-9f65f15e844c from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 395s autopkgtest [20:26:25]: testbed dpkg architecture: amd64 395s autopkgtest [20:26:25]: testbed apt version: 3.1.14 395s autopkgtest [20:26:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 395s autopkgtest [20:26:25]: testbed release detected to be: resolute 396s autopkgtest [20:26:26]: updating testbed package index (apt update) 396s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 396s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 396s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 396s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 396s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1528 kB] 396s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 396s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB] 396s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [199 kB] 396s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [265 kB] 396s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB] 396s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 396s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 396s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 396s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 396s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 396s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1432 kB] 397s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 397s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 397s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 397s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 397s Fetched 4492 kB in 1s (5418 kB/s) 398s Reading package lists... 398s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 398s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 398s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 398s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 399s Reading package lists... 399s Reading package lists... 399s Building dependency tree... 399s Reading state information... 399s Calculating upgrade... 399s The following packages will be upgraded: 399s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 399s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 399s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 399s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 399s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 399s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 399s Need to get 14.4 MB of archives. 399s After this operation, 270 kB disk space will be freed. 399s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 399s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 399s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 399s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 400s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 400s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 400s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 400s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 400s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 400s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 400s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 400s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 400s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 400s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 400s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 400s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 400s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 400s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 400s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 400s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 400s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 400s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 400s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 400s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 400s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 400s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 400s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 400s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 400s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 400s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 400s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 400s dpkg-preconfigure: unable to re-open stdin: No such file or directory 400s Fetched 14.4 MB in 1s (24.5 MB/s) 400s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 400s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 400s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 400s Setting up findutils (4.10.0-3build2) ... 400s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 400s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 400s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 400s Setting up sed (4.9-2build3) ... 400s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 401s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 401s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 401s Setting up tar (1.35+dfsg-3.1build2) ... 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 401s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 401s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 401s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 401s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 401s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 401s Setting up libc6:amd64 (2.42-2ubuntu5) ... 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 401s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 401s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 401s Setting up libc-bin (2.42-2ubuntu5) ... 401s (Reading database ... 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over (3.20250708.1ubuntu1) ... 402s Setting up libnpth0t64:amd64 (1.8-3build1) ... 402s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 402s Setting up libgpm2:amd64 (1.20.7-12build1) ... 402s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 402s Setting up libsensors-config (1:3.6.2-2build1) ... 402s Setting up less (668-1build1) ... 402s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 402s amd64-microcode: microcode will be updated at next boot 402s Setting up locales (2.42-2ubuntu5) ... 403s Generating locales (this might take a while)... 404s en_US.UTF-8... done 404s Generation complete. 404s Setting up pollinate (4.33-4ubuntu5) ... 414s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 414s Setting up patch (2.8-2build1) ... 414s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 414s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 414s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 414s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 414s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 414s Setting up mawk (1.3.4.20260129-1) ... 414s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 414s Setting up libdrm-common (2.4.131-1) ... 414s Setting up python3-referencing (0.36.2-1ubuntu2) ... 414s Setting up apt (3.1.15) ... 415s Setting up python3-markdown-it (3.0.0-3build1) ... 415s Setting up libdrm2:amd64 (2.4.131-1) ... 415s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 415s Processing triggers for libc-bin (2.42-2ubuntu5) ... 415s Processing triggers for systemd (259-1ubuntu3) ... 415s Processing triggers for man-db (2.13.1-1) ... 416s Processing triggers for install-info (7.2-5) ... 416s Processing triggers for initramfs-tools (0.150ubuntu7) ... 416s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 421s autopkgtest [20:26:51]: upgrading testbed (apt dist-upgrade and autopurge) 421s Reading package lists... 422s Building dependency tree... 422s Reading state information... 422s Calculating upgrade... 422s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 422s Solving dependencies... 422s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 422s autopkgtest [20:26:52]: rebooting testbed after setup commands that affected boot 453s Reading package lists... 453s Building dependency tree... 453s Reading state information... 453s Solving dependencies... 453s The following NEW packages will be installed: 453s libssw0 ssw-align 453s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 453s Need to get 44.5 kB of archives. 453s After this operation, 122 kB of additional disk space will be used. 453s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssw0 amd64 1.1-15 [22.5 kB] 453s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 ssw-align amd64 1.1-15 [21.9 kB] 454s Fetched 44.5 kB in 0s (418 kB/s) 454s Selecting previously unselected package libssw0:amd64. 454s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 454s Preparing to unpack .../libssw0_1.1-15_amd64.deb ... 454s Unpacking libssw0:amd64 (1.1-15) ... 454s Selecting previously unselected package ssw-align. 454s Preparing to unpack .../ssw-align_1.1-15_amd64.deb ... 454s Unpacking ssw-align (1.1-15) ... 454s Setting up libssw0:amd64 (1.1-15) ... 454s Setting up ssw-align (1.1-15) ... 454s Processing triggers for libc-bin (2.42-2ubuntu5) ... 454s Processing triggers for man-db (2.13.1-1) ... 456s autopkgtest [20:27:26]: test run-example: [----------------------- 456s target_name: chr1 456s query_name: chr1 456s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 456s 456s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 456s 456s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 456s 456s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 456s 456s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 456s 456s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 456s 456s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 456s 456s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 456s 456s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 456s 456s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 456s 456s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 456s 456s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 456s 456s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 456s 456s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 456s 456s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 456s 456s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 456s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 456s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 456s 458s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 458s 458s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 458s ||||||||||||||||||||||||||||||||||||||||| 458s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 458s 458s target_name: chr2 458s query_name: chr1 458s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 458s 458s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 458s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 458s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 458s 458s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 458s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 458s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 458s 458s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 458s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 458s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 458s 458s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 458s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 458s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 458s 458s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 458s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 458s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 458s 458s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 458s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 458s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 458s 458s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 458s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 458s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 458s 458s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 458s | *||*||||||| ||**| | |||||||| |*||| ||| 458s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 458s 458s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 458s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 458s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 458s 458s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 458s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 458s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 458s 458s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 458s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 458s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 458s 458s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 458s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 458s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 458s 458s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 458s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 458s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 458s 458s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 458s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 458s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 458s 458s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 458s || || || |||| || || || |||*|||| |||| |*|| || ||| || 458s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 458s 458s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 458s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 458s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 458s 458s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 458s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 458s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 458s 458s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 458s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 458s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 458s 458s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 458s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 458s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 458s 458s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 458s *||||| |*|||*||||| 458s Query: 955 --TACTTC-TAATTTTTCAC 971 458s 458s target_name: chr3 458s query_name: chr1 458s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 458s 458s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 458s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 458s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 458s 458s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 458s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 458s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 458s 458s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 458s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 458s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 458s 458s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 458s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 458s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 458s 458s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 458s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 458s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 458s 458s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 458s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 458s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 458s 458s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 458s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 458s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 458s 458s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 458s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 458s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 458s 458s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 458s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 458s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG-CPU time: 2.142219 seconds 458s --AAAC--CAATGC-C-ACAAAACA--T 469 458s 458s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 458s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 458s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 458s 458s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 458s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 458s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 458s 458s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 458s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 458s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 458s 458s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 458s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 458s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 458s 458s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 458s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 458s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 458s 458s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 458s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 458s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 458s 458s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 458s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 458s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 458s 458s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 458s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 458s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 458s 458s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 458s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 458s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 458s 458s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 458s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 458s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 458s 458s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 458s *|||| |*|||||*||| || |*|||*||*|| 458s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 458s 458s target_name: chr4 458s query_name: chr1 458s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 458s 458s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 458s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 458s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 458s 458s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 458s ||| || |||***||| |||| |||| |||| || ||| || 458s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 458s 458s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 458s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 458s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 458s 458s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 458s || |||| ||||||| || |*|||||*||||*|*|| 458s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 458s 458s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 458s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 458s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 458s 458s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 458s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 458s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 458s 458s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 458s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 458s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 458s 458s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 458s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 458s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 458s 458s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 458s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 458s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 458s 458s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 458s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 458s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 458s 458s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 458s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 458s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 458s 458s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 458s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 458s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 458s 458s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 458s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 458s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 458s 458s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 458s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 458s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 458s 458s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 458s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 458s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 458s 458s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 458s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 458s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 458s 458s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 458s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 458s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 458s 458s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 458s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 458s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 458s 458s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 458s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 458s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 458s 458s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 458s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 458s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 458s 458s Target: 48049 GAA---AT--AAAGTA 48059 458s ||| || ||| || 458s Query: 987 GAATGGATCCAAA-TA 1001 458s 458s target_name: chr5 458s query_name: chr1 458s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 458s 458s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 458s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 458s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 458s 458s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 458s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 458s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 458s 458s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 458s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 458s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 458s 458s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 458s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 458s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 458s 458s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 458s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 458s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 458s 458s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 458s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 458s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 458s 458s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 458s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 458s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 458s 458s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 458s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 458s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 458s 458s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 458s | |||||| ||||*|| | || | ||| |*||*||| || 458s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 458s 458s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 458s |||****| |||| |*|*|***|||*| ||*|*| ||| || 458s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 458s 458s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 458s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 458s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 458s 458s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 458s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 458s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 458s 458s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 458s | | || |||| ||||| |*|| |||| ||||*||| |||| || 458s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 458s 458s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 458s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 458s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 458s 458s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 458s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 458s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 458s 458s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 458s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 458s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 458s 458s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 458s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 458s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 458s 458s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 458s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 458s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 458s 458s Target: 9707 TGTTGATTGTTTC-CTTT 9723 458s |**|*||| |||| |||| 458s Query: 958 TTCTAATT-TTTCACTTT 974 458s 458s target_name: chr1 458s query_name: chr1 458s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 458s 458s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 458s 458s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 458s 458s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 458s 458s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 458s 458s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 458s 458s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 458s 458s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 458s 458s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 458s 458s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 458s 458s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 458s 458s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 458s 458s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 458s 458s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 458s 458s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 458s 458s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 458s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 458s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 458s 460s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 460s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 460s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 460s 460s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 460s ||||||||||||||||||||||||||||||||||||||||| 460s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 460s 460s target_name: chr2 460s query_name: chr1 460s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 460s 460s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 460s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 460s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 460s 460s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 460s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 460s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 460s 460s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 460s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 460s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 460s 460s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 460s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 460s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 460s 460s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 460s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 460s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 460s 460s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 460s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 460s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 460s 460s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 460s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 460s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 460s 460s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 460s | *||*||||||| ||**| | |||||||| |*||| ||| 460s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 460s 460s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 460s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 460s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 460s 460s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 460s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 460s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 460s 460s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 460s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 460s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 460s 460s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 460s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 460s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 460s 460s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 460s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 460s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 460s 460s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 460s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 460s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 460s 460s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 460s || || || |||| || || || |||*|||| |||| |*|| || ||| || 460s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 460s 460s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 460s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 460s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 460s 460s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 460s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 460s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 460s 460s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 460s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 460s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 460s 460s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 460s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 460s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 460s 460s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 460s *||||| |*|||*||||| 460s Query: 955 --TACTTC-TAATTTTTCAC 971 460s 460s target_name: chr3 460s query_name: chr1 460s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 460s 460s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 460s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 460s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 460s 460s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 460s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 460s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 460s 460s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 460s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 460s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 460s 460s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 460s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 460s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 460s 460s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 460s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 460s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 460s 460s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 460s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 460s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 460s 460s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 460s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 460s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 460s 460s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 460s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 460s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 460s 460s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 460s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 460s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 460s 460s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 460s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 460s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 460s 460s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 460s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 460s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 460s 460s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 460s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 460s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 460s 460s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 460s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 460s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 460s 460s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 460s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 460s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 460s 460s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 460s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 460s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 460s 460s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 460s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 460s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 460s 460s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 460s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 460s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 460s 460s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 460s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 460s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 460s 460s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 460s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 460s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 460s 460s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 460s *|||| |*|||||*||| || |*|||*||*|| 460s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 460s 460s target_name: chr4 460s query_name: chr1 460s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 460s 460s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 460s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 460s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 460s 460s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 460s ||| || |||***||| |||| |||| |||| || ||| || 460s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 460s 460s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 460s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 460s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 460s 460s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 460s || |||| ||||||| || |*|||||*||||*|*|| 460s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 460s 460s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 460s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 460s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 460s 460s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 460s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 460s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 460s 460s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 460s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 460s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 460s 460s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 460s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 460s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 460s 460s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 460s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 460s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 460s 460s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 460s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 460s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 460s 460s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 460s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 460s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 460s 460s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 460s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 460s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 460s 460s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 460s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 460s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 460s 460s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 460s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 460s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 460s 460s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 460s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 460s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 460s 460s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 460s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 460s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 460s 460s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 460s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 460s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 460s 460s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 460s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 460s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 460s 460s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 460s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 460s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 460s 460s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 460s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 460s CPU time: 2.137941 seconds 460s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 460s 460s Target: 48049 GAA---AT--AAAGTA 48059 460s ||| || ||| || 460s Query: 987 GAATGGATCCAAA-TA 1001 460s 460s target_name: chr5 460s query_name: chr1 460s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 460s 460s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 460s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 460s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 460s 460s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 460s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 460s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 460s 460s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 460s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 460s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 460s 460s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 460s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 460s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 460s 460s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 460s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 460s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 460s 460s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 460s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 460s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 460s 460s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 460s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 460s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 460s 460s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 460s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 460s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 460s 460s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 460s | |||||| ||||*|| | || | ||| |*||*||| || 460s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 460s 460s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 460s |||****| |||| |*|*|***|||*| ||*|*| ||| || 460s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 460s 460s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 460s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 460s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 460s 460s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 460s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 460s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 460s 460s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 460s | | || |||| ||||| |*|| |||| ||||*||| |||| || 460s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 460s 460s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 460s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 460s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 460s 460s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 460s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 460s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 460s 460s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 460s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 460s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 460s 460s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 460s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 460s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 460s 460s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 460s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 460s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 460s 460s Target: 9707 TGTTGATTGTTTC-CTTT 9723 460s |**|*||| |||| |||| 460s Query: 958 TTCTAATT-TTTCACTTT 974 460s 461s autopkgtest [20:27:31]: test run-example: -----------------------] 461s run-example PASS 461s autopkgtest [20:27:31]: test run-example: - - - - - - - - - - results - - - - - - - - - - 461s autopkgtest [20:27:31]: @@@@@@@@@@@@@@@@@@@@ summary 461s build-lib PASS 461s build-lib-java PASS 461s run-example PASS