0s autopkgtest [20:16:31]: starting date and time: 2026-02-06 20:16:31+0000 0s autopkgtest [20:16:31]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:16:31]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.okt1kj0q/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade librostlab-blast --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-2.secgroup --name adt-resolute-amd64-librostlab-blast-20260206-201631-juju-7f2275-prod-proposed-migration-environment-2-c0cce7b7-d5dc-48c8-b70b-bfc9a8f3d6e4 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-librostlab-blast-20260206-201631-juju-7f2275-prod-proposed-migration-environment-2-c0cce7b7-d5dc-48c8-b70b-bfc9a8f3d6e4 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 72s autopkgtest [20:17:43]: testbed dpkg architecture: amd64 72s autopkgtest [20:17:43]: testbed apt version: 3.1.14 72s autopkgtest [20:17:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 73s autopkgtest [20:17:44]: testbed release detected to be: None 73s autopkgtest [20:17:44]: updating testbed package index (apt update) 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [199 kB] 74s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB] 74s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1528 kB] 74s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 74s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [265 kB] 74s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB] 74s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 74s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 74s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 74s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 74s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 74s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1432 kB] 74s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 74s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 74s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 75s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 75s Fetched 4492 kB in 1s (4623 kB/s) 76s Reading package lists... 80s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 81s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 81s Reading package lists... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s Calculating upgrade... 82s The following packages will be upgraded: 82s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 82s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 82s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 82s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 82s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 82s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Need to get 14.4 MB of archives. 82s After this operation, 270 kB disk space will be freed. 82s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 82s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 82s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 82s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 82s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 82s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 82s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 82s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 82s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 82s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 82s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 82s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 82s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 82s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 82s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 82s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 82s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 82s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 82s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 82s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 82s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 82s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 82s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 82s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 82s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 82s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 82s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 82s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 82s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 82s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 82s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 83s dpkg-preconfigure: unable to re-open stdin: No such file or directory 83s Fetched 14.4 MB in 1s (18.1 MB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 83s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 83s Setting up findutils (4.10.0-3build2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 83s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 83s Setting up sed (4.9-2build3) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 83s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 83s Setting up tar (1.35+dfsg-3.1build2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 83s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 83s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 83s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 83s Setting up libc6:amd64 (2.42-2ubuntu5) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 83s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 83s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 83s Setting up libc-bin (2.42-2ubuntu5) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 84s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 84s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 84s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 84s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 84s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 84s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 84s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 84s Unpacking apt (3.1.15) over (3.1.14) ... 84s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 84s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 84s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 84s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 84s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 84s Unpacking less (668-1build1) over (668-1) ... 84s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 84s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 84s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 84s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 84s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 84s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 84s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 84s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 84s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 84s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 84s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 84s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 84s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 84s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 84s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 84s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 84s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 84s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 84s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 84s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 84s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 84s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 84s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 85s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 85s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 85s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 85s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 85s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 85s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 85s Unpacking patch (2.8-2build1) over (2.8-2) ... 85s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 85s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 85s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 85s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 85s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 85s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 85s Setting up libnpth0t64:amd64 (1.8-3build1) ... 85s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 85s Setting up libgpm2:amd64 (1.20.7-12build1) ... 85s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 85s Setting up libsensors-config (1:3.6.2-2build1) ... 85s Setting up less (668-1build1) ... 85s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 85s amd64-microcode: microcode will be updated at next boot 85s Setting up locales (2.42-2ubuntu5) ... 85s Generating locales (this might take a while)... 86s en_US.UTF-8... done 86s Generation complete. 86s Setting up pollinate (4.33-4ubuntu5) ... 97s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 97s Setting up patch (2.8-2build1) ... 97s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 97s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 97s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 97s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 97s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 97s Setting up mawk (1.3.4.20260129-1) ... 97s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 97s Setting up libdrm-common (2.4.131-1) ... 97s Setting up python3-referencing (0.36.2-1ubuntu2) ... 97s Setting up apt (3.1.15) ... 97s Setting up python3-markdown-it (3.0.0-3build1) ... 97s Setting up libdrm2:amd64 (2.4.131-1) ... 97s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 97s Processing triggers for libc-bin (2.42-2ubuntu5) ... 97s Processing triggers for systemd (259-1ubuntu3) ... 98s Processing triggers for man-db (2.13.1-1) ... 99s Processing triggers for install-info (7.2-5) ... 99s Processing triggers for initramfs-tools (0.150ubuntu7) ... 99s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 104s autopkgtest [20:18:15]: upgrading testbed (apt dist-upgrade and autopurge) 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Solving dependencies... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [20:18:17]: rebooting testbed after setup commands that affected boot 133s autopkgtest [20:18:44]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 136s autopkgtest [20:18:47]: @@@@@@@@@@@@@@@@@@@@ apt-source librostlab-blast 137s Get:1 http://ftpmaster.internal/ubuntu resolute/universe librostlab-blast 1.0.1-14 (dsc) [2562 B] 137s Get:2 http://ftpmaster.internal/ubuntu resolute/universe librostlab-blast 1.0.1-14 (tar) [384 kB] 137s Get:3 http://ftpmaster.internal/ubuntu resolute/universe librostlab-blast 1.0.1-14 (diff) [6716 B] 138s gpgv: Signature made Wed Apr 24 11:20:29 2024 UTC 138s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 138s gpgv: issuer "emollier@debian.org" 138s gpgv: Can't check signature: No public key 138s dpkg-source: warning: cannot verify inline signature for ./librostlab-blast_1.0.1-14.dsc: no acceptable signature found 138s autopkgtest [20:18:49]: testing package librostlab-blast version 1.0.1-14 138s autopkgtest [20:18:49]: build not needed 138s autopkgtest [20:18:49]: test run-unit-test: preparing testbed 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Solving dependencies... 139s The following NEW packages will be installed: 139s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 139s g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 139s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libc-dev-bin libc6-dev 139s libcc1-0 libcrypt-dev libgcc-15-dev libgomp1 libhwasan0 libisl23 libitm1 139s libjs-jquery liblsan0 libmpc3 libquadmath0 librostlab-blast-doc 139s librostlab-blast0-dev librostlab-blast0v5 librostlab3-dev librostlab3t64 139s libstdc++-15-dev libtsan2 libubsan1 linux-libc-dev rpcsvc-proto 139s 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 75.2 MB of archives. 139s After this operation, 266 MB of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-dev-bin amd64 2.42-2ubuntu5 [23.3 kB] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 140s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 140s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6-dev amd64 2.42-2ubuntu5 [2206 kB] 140s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 140s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 140s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 140s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 140s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 140s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 140s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 140s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 140s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 140s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 140s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 141s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 141s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 141s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 141s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 141s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 141s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 141s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 141s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 141s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 141s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 141s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 142s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 142s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 142s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 142s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 142s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 142s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 librostlab-blast-doc all 1.0.1-14 [421 kB] 142s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 librostlab-blast0v5 amd64 1.0.1-14 [86.9 kB] 142s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 librostlab3t64 amd64 1.0.20-14 [5048 B] 142s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 librostlab3-dev amd64 1.0.20-14 [11.4 kB] 142s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 librostlab-blast0-dev amd64 1.0.1-14 [104 kB] 142s Fetched 75.2 MB in 3s (23.7 MB/s) 142s Selecting previously unselected package libc-dev-bin. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 142s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu5_amd64.deb ... 142s Unpacking libc-dev-bin (2.42-2ubuntu5) ... 142s Selecting previously unselected package linux-libc-dev:amd64. 142s Preparing to unpack .../01-linux-libc-dev_6.18.0-9.9_amd64.deb ... 142s Unpacking linux-libc-dev:amd64 (6.18.0-9.9) ... 142s Selecting previously unselected package libcrypt-dev:amd64. 142s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 142s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 142s Selecting previously unselected package rpcsvc-proto. 142s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 142s Unpacking rpcsvc-proto (1.4.3-1build1) ... 142s Selecting previously unselected package libc6-dev:amd64. 142s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu5_amd64.deb ... 142s Unpacking libc6-dev:amd64 (2.42-2ubuntu5) ... 142s Selecting previously unselected package libisl23:amd64. 142s Preparing to unpack .../05-libisl23_0.27-1build1_amd64.deb ... 142s Unpacking libisl23:amd64 (0.27-1build1) ... 142s Selecting previously unselected package libmpc3:amd64. 142s Preparing to unpack .../06-libmpc3_1.3.1-2_amd64.deb ... 142s Unpacking libmpc3:amd64 (1.3.1-2) ... 142s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 142s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 142s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 142s Selecting previously unselected package cpp-15. 142s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 142s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 142s Selecting previously unselected package cpp-x86-64-linux-gnu. 142s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 142s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 143s Selecting previously unselected package cpp. 143s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 143s Unpacking cpp (4:15.2.0-4ubuntu1) ... 143s Selecting previously unselected package libcc1-0:amd64. 143s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libgomp1:amd64. 143s Preparing to unpack .../12-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libitm1:amd64. 143s Preparing to unpack .../13-libitm1_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libasan8:amd64. 143s Preparing to unpack .../14-libasan8_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package liblsan0:amd64. 143s Preparing to unpack .../15-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libtsan2:amd64. 143s Preparing to unpack .../16-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libubsan1:amd64. 143s Preparing to unpack .../17-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libhwasan0:amd64. 143s Preparing to unpack .../18-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libquadmath0:amd64. 143s Preparing to unpack .../19-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package libgcc-15-dev:amd64. 143s Preparing to unpack .../20-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 143s Preparing to unpack .../21-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package gcc-15. 143s Preparing to unpack .../22-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package gcc-x86-64-linux-gnu. 143s Preparing to unpack .../23-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 143s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 143s Selecting previously unselected package gcc. 143s Preparing to unpack .../24-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 143s Unpacking gcc (4:15.2.0-4ubuntu1) ... 143s Selecting previously unselected package libstdc++-15-dev:amd64. 143s Preparing to unpack .../25-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package g++-15-x86-64-linux-gnu. 143s Preparing to unpack .../26-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package g++-15. 143s Preparing to unpack .../27-g++-15_15.2.0-12ubuntu1_amd64.deb ... 143s Unpacking g++-15 (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package g++-x86-64-linux-gnu. 143s Preparing to unpack .../28-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 143s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 143s Selecting previously unselected package g++. 143s Preparing to unpack .../29-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 143s Unpacking g++ (4:15.2.0-4ubuntu1) ... 143s Selecting previously unselected package build-essential. 143s Preparing to unpack .../30-build-essential_12.12ubuntu2_amd64.deb ... 143s Unpacking build-essential (12.12ubuntu2) ... 143s Selecting previously unselected package libjs-jquery. 143s Preparing to unpack .../31-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 143s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 143s Selecting previously unselected package librostlab-blast-doc. 143s Preparing to unpack .../32-librostlab-blast-doc_1.0.1-14_all.deb ... 143s Unpacking librostlab-blast-doc (1.0.1-14) ... 143s Selecting previously unselected package librostlab-blast0v5:amd64. 143s Preparing to unpack .../33-librostlab-blast0v5_1.0.1-14_amd64.deb ... 143s Unpacking librostlab-blast0v5:amd64 (1.0.1-14) ... 143s Selecting previously unselected package librostlab3t64:amd64. 143s Preparing to unpack .../34-librostlab3t64_1.0.20-14_amd64.deb ... 143s Unpacking librostlab3t64:amd64 (1.0.20-14) ... 143s Selecting previously unselected package librostlab3-dev. 143s Preparing to unpack .../35-librostlab3-dev_1.0.20-14_amd64.deb ... 143s Unpacking librostlab3-dev (1.0.20-14) ... 143s Selecting previously unselected package librostlab-blast0-dev. 143s Preparing to unpack .../36-librostlab-blast0-dev_1.0.1-14_amd64.deb ... 143s Unpacking librostlab-blast0-dev (1.0.1-14) ... 143s Setting up librostlab3t64:amd64 (1.0.20-14) ... 143s Setting up linux-libc-dev:amd64 (6.18.0-9.9) ... 143s Setting up libgomp1:amd64 (15.2.0-12ubuntu1) ... 143s Setting up librostlab3-dev (1.0.20-14) ... 143s Setting up rpcsvc-proto (1.4.3-1build1) ... 143s Setting up libquadmath0:amd64 (15.2.0-12ubuntu1) ... 143s Setting up libmpc3:amd64 (1.3.1-2) ... 143s Setting up libubsan1:amd64 (15.2.0-12ubuntu1) ... 143s Setting up libhwasan0:amd64 (15.2.0-12ubuntu1) ... 143s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ... 143s Setting up libasan8:amd64 (15.2.0-12ubuntu1) ... 143s Setting up librostlab-blast0v5:amd64 (1.0.1-14) ... 143s Setting up librostlab-blast0-dev (1.0.1-14) ... 143s Setting up libtsan2:amd64 (15.2.0-12ubuntu1) ... 143s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 143s Setting up libisl23:amd64 (0.27-1build1) ... 143s Setting up libc-dev-bin (2.42-2ubuntu5) ... 143s Setting up libcc1-0:amd64 (15.2.0-12ubuntu1) ... 143s Setting up liblsan0:amd64 (15.2.0-12ubuntu1) ... 143s Setting up libitm1:amd64 (15.2.0-12ubuntu1) ... 143s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 143s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 143s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 143s Setting up librostlab-blast-doc (1.0.1-14) ... 143s Setting up cpp-15 (15.2.0-12ubuntu1) ... 143s Setting up libc6-dev:amd64 (2.42-2ubuntu5) ... 143s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 143s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 143s Setting up gcc-15 (15.2.0-12ubuntu1) ... 143s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 143s Setting up cpp (4:15.2.0-4ubuntu1) ... 143s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 143s Setting up gcc (4:15.2.0-4ubuntu1) ... 143s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 143s Setting up g++-15 (15.2.0-12ubuntu1) ... 143s Setting up g++ (4:15.2.0-4ubuntu1) ... 143s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 143s Setting up build-essential (12.12ubuntu2) ... 143s Processing triggers for man-db (2.13.1-1) ... 144s Processing triggers for libc-bin (2.42-2ubuntu5) ... 145s autopkgtest [20:18:56]: test run-unit-test: [----------------------- 145s Compile and run... 146s BLASTP 2.2.18 [Mar-02-2008] 146s 146s references: [ Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 146s Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 146s "Gapped BLAST and PSI-BLAST: a new generation of protein database search 146s programs", Nucleic Acids Res. 25:3389-3402., Reference for compositional score matrix adjustment: Altschul, Stephen F., 146s John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, 146s Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches 146s using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109., Reference for composition-based statistics starting in round 2: 146s Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, 146s Sergei Shavirin, John L. Spouge, Yuri I. Wolf, 146s Eugene V. Koonin, and Stephen F. Altschul (2001), 146s "Improving the accuracy of PSI-BLAST protein database searches with 146s composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. ] 146s 146s rounds: [ ol_idx = 0, ol_cnt = 1, hit_idx = 0, hit_cnt = 1, ol_new_idx = 18446744073709551615, ol_new_cnt = 0, ol_idx = 1, ol_cnt = 1, hit_idx = 1, hit_cnt = 1, ol_new_idx = 2, ol_new_cnt = 0 ] 146s 146s n = query d = (113 letters) 146s 146s Database: big_80 7170017 sequences; 2505616640 total letters 146s 146s one-line desc: [ n = pdb|pdb|2vh3_B d = : 212 bits, 8e-54 E, n = pdb|pdb|2vh3_B d = : 226 bits, 5e-58 E ] 146s 146s CONVERGED! 146s 146s hits: [ n = pdb|pdb|2vh3_B d = Length = 117 [ bits = 212, raw = 539, E = 8e-54, method = Compositional matrix adjust, ident = 109, pos = 109, gaps = 0, q_strand = , s_strand = , q_frame = 32, s_frame = 32, q_start = 1, q_ali = AXAXSFPPXEIPGSKECLAEALQKHQGFKKKSYALIXAYLNYKEDAENYERAAEDFDSAVKXTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLXTLFQKLYAIPHN, q_end = 113, match_line = A A SFPP EIPGSKECLAEALQKHQGFKKKSYALI AYLNYKEDAENYERAAEDFDSAVK TG KEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSL TLFQKLYAIPHN, s_start = 1, s_ali = AXACSFPPXEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYERAAEDFDSAVKCTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKLYAIPHN, s_end = 113 ], n = pdb|pdb|2vh3_B d = Length = 117 [ bits = 226, raw = 575, E = 5e-58, method = Composition-based stats, ident = 109, pos = 109, gaps = 0, q_strand = , s_strand = , q_frame = 32, s_frame = 32, q_start = 1, q_ali = AXAXSFPPXEIPGSKECLAEALQKHQGFKKKSYALIXAYLNYKEDAENYERAAEDFDSAVKXTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLXTLFQKLYAIPHN, q_end = 113, match_line = A A SFPP EIPGSKECLAEALQKHQGFKKKSYALI AYLNYKEDAENYERAAEDFDSAVK TG KEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSL TLFQKLYAIPHN, s_start = 1, s_ali = AXACSFPPXEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYERAAEDFDSAVKCTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKLYAIPHN, s_end = 113 ] ] 146s 146s Database: big_80 146s Posted date: Feb 6, 2012 9:39 AM 146s Number of letters in database: 999,999,843 146s Number of sequences in database: 1,100,691 146s 146s Database: /mnt/project/rost_db/data/big/big_80.01 146s Posted date: Feb 6, 2012 9:42 AM 146s Number of letters in database: 999,999,792 146s Number of sequences in database: 2,641,400 146s 146s Database: /mnt/project/rost_db/data/big/big_80.02 146s Posted date: Feb 6, 2012 9:44 AM 146s Number of letters in database: 505,617,005 146s Number of sequences in database: 3,427,926 146s 146s Lambda K H 146s 0.313 0.133 0.375 146s 146s Lambda K H 146s 0.267 0.0413 0.140 146s 146s 146s Matrix: BLOSUM62 146s Gap Penalties: Existence: 11, Extension: 1 146s Number of Hits to DB: 932,412,166 146s Number of Sequences: 7170017 146s Number of extensions: 30007572 146s Number of successful extensions: 53414 146s Number of sequences better than 1.0: 1 146s Number of HSP's better than 1.0 without gapping: 2 146s Number of HSP's successfully gapped in prelim test: 0 146s Number of HSP's that attempted gapping in prelim test: 53412 146s Number of HSP's gapped (non-prelim): 2 146s length of query: 113 146s length of database: 2,505,616,640 146s effective HSP length: 81 146s effective length of query: 32 146s effective length of database: 1,924,845,263 146s effective search space: 61595048416 146s effective search space used: 61595048416 146s T: 11 146s A: 40 146s X1: 16 ( 7.2 bits) 146s X2: 38 (14.6 bits) 146s X3: 64 (24.7 bits) 146s S1: 42 (21.9 bits) 146s S2: 82 (36.2 bits) 146s autopkgtest [20:18:57]: test run-unit-test: -----------------------] 146s autopkgtest [20:18:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 146s run-unit-test PASS 147s autopkgtest [20:18:58]: @@@@@@@@@@@@@@@@@@@@ summary 147s run-unit-test PASS