0s autopkgtest [01:15:44]: starting date and time: 2025-10-19 01:15:44+0000 0s autopkgtest [01:15:44]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [01:15:44]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gaq1iq9g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade libedlib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-7.secgroup --name adt-resolute-amd64-libedlib-20251019-011544-juju-7f2275-prod-proposed-migration-environment-20-8ea886dc-4424-479b-9448-7e41bcd7bf58 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-libedlib-20251019-011544-juju-7f2275-prod-proposed-migration-environment-20-8ea886dc-4424-479b-9448-7e41bcd7bf58 from image adt/ubuntu-resolute-amd64-server-20251018.img (UUID dd697a48-b6cc-4a02-84bf-0f9f2fad5f89)... 27s autopkgtest [01:16:11]: testbed dpkg architecture: amd64 27s autopkgtest [01:16:11]: testbed apt version: 3.1.6ubuntu2 27s autopkgtest [01:16:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [01:16:12]: testbed release detected to be: None 28s autopkgtest [01:16:12]: updating testbed package index (apt update) 28s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 28s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 28s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 28s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 28s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [17.1 kB] 29s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [405 kB] 29s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 29s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.0 kB] 29s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [66.7 kB] 29s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [116 kB] 29s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 29s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 29s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [314 kB] 29s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [122 kB] 29s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.5 kB] 29s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B] 29s Fetched 1235 kB in 1s (1754 kB/s) 29s Reading package lists... 30s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 30s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 30s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 30s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 31s Reading package lists... 31s Reading package lists... 31s Building dependency tree... 31s Reading state information... 31s Calculating upgrade... 31s The following packages will be upgraded: 31s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 31s libpython3-stdlib python3 python3-minimal 31s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 31s Need to get 2751 kB of archives. 31s After this operation, 2048 B of additional disk space will be used. 31s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 31s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 31s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 31s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.8ubuntu1 [1140 kB] 32s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.8ubuntu1 [1438 kB] 32s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-1.0-1 amd64 1.86.0-6 [85.9 kB] 32s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-2.0 amd64 1.86.0-6 [25.3 kB] 32s dpkg-preconfigure: unable to re-open stdin: No such file or directory 32s Fetched 2751 kB in 1s (2414 kB/s) 32s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 32s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 32s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 32s Setting up python3-minimal (3.13.7-2) ... 33s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 33s Preparing to unpack .../0-python3_3.13.7-2_amd64.deb ... 33s running python pre-rtupdate hooks for python3.13... 33s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 33s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_amd64.deb ... 33s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 33s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_amd64.deb ... 33s Unpacking libapt-pkg7.0:amd64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 33s Preparing to unpack .../3-apt_3.1.8ubuntu1_amd64.deb ... 33s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 33s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_amd64.deb ... 33s Unpacking libgirepository-1.0-1:amd64 (1.86.0-6) over (1.84.0-1) ... 33s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_amd64.deb ... 33s Unpacking gir1.2-girepository-2.0:amd64 (1.86.0-6) over (1.84.0-1) ... 33s Setting up libgirepository-1.0-1:amd64 (1.86.0-6) ... 33s Setting up libapt-pkg7.0:amd64 (3.1.8ubuntu1) ... 33s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 33s Setting up apt (3.1.8ubuntu1) ... 33s Setting up python3 (3.13.7-2) ... 33s running python rtupdate hooks for python3.13... 33s running python post-rtupdate hooks for python3.13... 33s Setting up gir1.2-girepository-2.0:amd64 (1.86.0-6) ... 33s Processing triggers for man-db (2.13.1-1) ... 34s Processing triggers for libc-bin (2.42-0ubuntu3) ... 34s autopkgtest [01:16:18]: upgrading testbed (apt dist-upgrade and autopurge) 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Calculating upgrade... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Solving dependencies... 36s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 36s autopkgtest [01:16:20]: rebooting testbed after setup commands that affected boot 50s autopkgtest [01:16:34]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 52s autopkgtest [01:16:36]: @@@@@@@@@@@@@@@@@@@@ apt-source libedlib 54s Get:1 http://ftpmaster.internal/ubuntu resolute/universe libedlib 1.2.7-6build2 (dsc) [2270 B] 54s Get:2 http://ftpmaster.internal/ubuntu resolute/universe libedlib 1.2.7-6build2 (tar) [4319 kB] 54s Get:3 http://ftpmaster.internal/ubuntu resolute/universe libedlib 1.2.7-6build2 (diff) [7704 B] 54s gpgv: Signature made Tue Mar 4 17:29:01 2025 UTC 54s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 54s gpgv: Can't check signature: No public key 54s dpkg-source: warning: cannot verify inline signature for ./libedlib_1.2.7-6build2.dsc: no acceptable signature found 54s autopkgtest [01:16:38]: testing package libedlib version 1.2.7-6build2 55s autopkgtest [01:16:39]: build not needed 56s autopkgtest [01:16:40]: test run-unit-test: preparing testbed 56s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Solving dependencies... 57s The following NEW packages will be installed: 57s edlib-aligner libedlib-dev libedlib1 python3-edlib 57s 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 139 kB of archives. 57s After this operation, 402 kB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 libedlib1 amd64 1.2.7-6build2 [18.7 kB] 57s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 edlib-aligner amd64 1.2.7-6build2 [24.4 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 libedlib-dev amd64 1.2.7-6build2 [22.4 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-edlib amd64 1.2.7-6build2 [73.2 kB] 57s Fetched 139 kB in 0s (632 kB/s) 57s Selecting previously unselected package libedlib1:amd64. 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 57s Preparing to unpack .../libedlib1_1.2.7-6build2_amd64.deb ... 57s Unpacking libedlib1:amd64 (1.2.7-6build2) ... 57s Selecting previously unselected package edlib-aligner. 57s Preparing to unpack .../edlib-aligner_1.2.7-6build2_amd64.deb ... 57s Unpacking edlib-aligner (1.2.7-6build2) ... 57s Selecting previously unselected package libedlib-dev:amd64. 57s Preparing to unpack .../libedlib-dev_1.2.7-6build2_amd64.deb ... 57s Unpacking libedlib-dev:amd64 (1.2.7-6build2) ... 57s Selecting previously unselected package python3-edlib:amd64. 57s Preparing to unpack .../python3-edlib_1.2.7-6build2_amd64.deb ... 57s Unpacking python3-edlib:amd64 (1.2.7-6build2) ... 57s Setting up libedlib1:amd64 (1.2.7-6build2) ... 57s Setting up python3-edlib:amd64 (1.2.7-6build2) ... 57s Setting up edlib-aligner (1.2.7-6build2) ... 57s Setting up libedlib-dev:amd64 (1.2.7-6build2) ... 57s Processing triggers for man-db (2.13.1-1) ... 58s Processing triggers for libc-bin (2.42-0ubuntu3) ... 59s autopkgtest [01:16:43]: test run-unit-test: [----------------------- 59s Using NW alignment mode. 59s Reading queries... 59s Read 1 queries, 110 residues total. 59s Reading target fasta file... 59s Read target, 109 residues. 59s 59s Comparing queries to target... 59s 59s Query #0 (110 residues): score = 17 59s T: MMEEERFAASADEIFHVTQEVC-RTASELTESESRNVIVDELFCVGVTEM (0 - 48) 59s ||||||| | |||||||||| ||||||||||||||||||||||||||| 59s Q: MMEEERFKA---EIFHVTQEVCNRTASELTESESRNVIVDELFCVGVTEM (0 - 46) 59s 59s T: VAEQIRVLAKDIEA---HA-RKTVQPQDVLDDLCCRRNEGL-EIINNF-K (49 - 92) 59s | |||||||||||| || |||||||||| ||||||||| |||||| | 59s Q: VWEQIRVLAKDIEAFAEHAGRKTVQPQDVL--LCCRRNEGLYEIINNFHK (47 - 94) 59s 59s T: AESIKSKKKKKE-STTB (93 - 108) 59s ||||||||||| ||| 59s Q: -ESIKSKKKKKENSTT- (94 - 109) 59s 59s 59s Cpu time of searching: 0.000044 60s autopkgtest [01:16:43]: test run-unit-test: -----------------------] 60s run-unit-test PASS 60s autopkgtest [01:16:44]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 60s autopkgtest [01:16:44]: @@@@@@@@@@@@@@@@@@@@ summary 60s run-unit-test PASS