0s autopkgtest [08:43:02]: starting date and time: 2025-10-21 08:43:02+0000 0s autopkgtest [08:43:02]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [08:43:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z4zql9p1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-5.secgroup --name adt-resolute-amd64-lammps-20251021-084302-juju-7f2275-prod-proposed-migration-environment-2-f49b400e-a29e-4b2f-a201-a41cc0a4d73a --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-lammps-20251021-084302-juju-7f2275-prod-proposed-migration-environment-2-f49b400e-a29e-4b2f-a201-a41cc0a4d73a from image adt/ubuntu-resolute-amd64-server-20251020.img (UUID 7055ba1b-c1c6-41b9-86b4-9208df8eb198)... 61s autopkgtest [08:44:03]: testbed dpkg architecture: amd64 62s autopkgtest [08:44:04]: testbed apt version: 3.1.8ubuntu1 62s autopkgtest [08:44:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [08:44:04]: testbed release detected to be: None 63s autopkgtest [08:44:05]: updating testbed package index (apt update) 64s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 64s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.1 kB] 64s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [560 kB] 64s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 64s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 64s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [75.4 kB] 64s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [124 kB] 64s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 64s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 64s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [379 kB] 65s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [130 kB] 65s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 65s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 65s Fetched 1472 kB in 1s (1333 kB/s) 65s Reading package lists... 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Calculating upgrade... 68s The following packages will be upgraded: 68s libbrotli1 libjson-c5 libpython3.13 libpython3.13-minimal 68s libpython3.13-stdlib libxml2-16 python3-bcrypt python3-dbus python3-inflect 68s python3-markupsafe python3-oauthlib python3-zipp python3.13 python3.13-gdbm 68s python3.13-minimal 68s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 10.0 MB of archives. 68s After this operation, 181 kB disk space will be freed. 68s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13 amd64 3.13.9-1 [753 kB] 69s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-minimal amd64 3.13.9-1 [2408 kB] 69s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13 amd64 3.13.9-1 [2367 kB] 70s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [2078 kB] 70s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-minimal amd64 3.13.9-1 [887 kB] 70s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libjson-c5 amd64 0.18+ds-1.1 [37.7 kB] 70s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2build1 [616 kB] 70s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dbus amd64 1.4.0-1build1 [118 kB] 70s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-gdbm amd64 3.13.9-1 [32.6 kB] 70s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.1.0-2build6 [334 kB] 70s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-inflect all 7.5.0-1 [33.9 kB] 70s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markupsafe amd64 2.1.5-1build5 [13.8 kB] 70s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-oauthlib all 3.3.1-1 [93.5 kB] 70s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-zipp all 3.23.0-1 [10.4 kB] 70s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-bcrypt amd64 4.3.0-2 [253 kB] 70s dpkg-preconfigure: unable to re-open stdin: No such file or directory 71s Fetched 10.0 MB in 2s (4091 kB/s) 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78444 files and directories currently installed.) 71s Preparing to unpack .../00-python3.13_3.13.9-1_amd64.deb ... 71s Unpacking python3.13 (3.13.9-1) over (3.13.7-1) ... 71s Preparing to unpack .../01-python3.13-minimal_3.13.9-1_amd64.deb ... 71s Unpacking python3.13-minimal (3.13.9-1) over (3.13.7-1) ... 71s Preparing to unpack .../02-libpython3.13_3.13.9-1_amd64.deb ... 71s Unpacking libpython3.13:amd64 (3.13.9-1) over (3.13.7-1) ... 71s Preparing to unpack .../03-libpython3.13-stdlib_3.13.9-1_amd64.deb ... 71s Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) over (3.13.7-1) ... 72s Preparing to unpack .../04-libpython3.13-minimal_3.13.9-1_amd64.deb ... 72s Unpacking libpython3.13-minimal:amd64 (3.13.9-1) over (3.13.7-1) ... 72s Preparing to unpack .../05-libjson-c5_0.18+ds-1.1_amd64.deb ... 72s Unpacking libjson-c5:amd64 (0.18+ds-1.1) over (0.18+ds-1) ... 72s Preparing to unpack .../06-libxml2-16_2.14.5+dfsg-0.2build1_amd64.deb ... 72s Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2build1) over (2.14.5+dfsg-0.2) ... 72s Preparing to unpack .../07-python3-dbus_1.4.0-1build1_amd64.deb ... 72s Unpacking python3-dbus (1.4.0-1build1) over (1.4.0-1) ... 72s Preparing to unpack .../08-python3.13-gdbm_3.13.9-1_amd64.deb ... 72s Unpacking python3.13-gdbm (3.13.9-1) over (3.13.7-1) ... 72s Preparing to unpack .../09-libbrotli1_1.1.0-2build6_amd64.deb ... 72s Unpacking libbrotli1:amd64 (1.1.0-2build6) over (1.1.0-2build5) ... 72s Preparing to unpack .../10-python3-inflect_7.5.0-1_all.deb ... 73s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 73s Preparing to unpack .../11-python3-markupsafe_2.1.5-1build5_amd64.deb ... 73s Unpacking python3-markupsafe (2.1.5-1build5) over (2.1.5-1build4) ... 73s Preparing to unpack .../12-python3-oauthlib_3.3.1-1_all.deb ... 73s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 73s Preparing to unpack .../13-python3-zipp_3.23.0-1_all.deb ... 73s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 73s Preparing to unpack .../14-python3-bcrypt_4.3.0-2_amd64.deb ... 73s Unpacking python3-bcrypt (4.3.0-2) over (4.2.0-2.1build1) ... 73s Setting up python3-dbus (1.4.0-1build1) ... 74s Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2build1) ... 74s Setting up python3-bcrypt (4.3.0-2) ... 74s Setting up libbrotli1:amd64 (1.1.0-2build6) ... 74s Setting up python3-zipp (3.23.0-1) ... 74s Setting up python3-markupsafe (2.1.5-1build5) ... 74s Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... 74s Setting up python3-inflect (7.5.0-1) ... 74s Setting up python3-oauthlib (3.3.1-1) ... 74s Setting up python3.13-minimal (3.13.9-1) ... 75s Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... 75s Setting up libjson-c5:amd64 (0.18+ds-1.1) ... 75s Setting up python3.13-gdbm (3.13.9-1) ... 75s Setting up libpython3.13:amd64 (3.13.9-1) ... 75s Setting up python3.13 (3.13.9-1) ... 76s Processing triggers for systemd (257.9-0ubuntu2) ... 76s Processing triggers for man-db (2.13.1-1) ... 77s Processing triggers for libc-bin (2.42-0ubuntu3) ... 77s autopkgtest [08:44:19]: upgrading testbed (apt dist-upgrade and autopurge) 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Calculating upgrade... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Solving dependencies... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s autopkgtest [08:44:23]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 82s autopkgtest [08:44:24]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 102s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B] 102s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB] 102s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB] 102s gpgv: Signature made Mon Mar 3 06:11:14 2025 UTC 102s gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 102s gpgv: Can't check signature: No public key 102s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found 107s autopkgtest [08:44:49]: testing package lammps version 20250204+dfsg.1-2 108s autopkgtest [08:44:50]: build not needed 130s autopkgtest [08:45:12]: test crack: preparing testbed 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Solving dependencies... 131s The following NEW packages will be installed: 131s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 131s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 131s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libevent-core-2.1-7t64 131s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 131s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 131s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 131s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libjbig0 131s libjpeg-turbo8 libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 131s liblerc4 libllvm17t64 libnetcdf22 libogg0 libopengl0 libopenmpi40 131s libpciaccess0 libpixman-1-0 libpnetcdf6 libproj25 libpsm2-2 librdmacm1t64 131s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 131s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libucx0 libvoro++1 libvtk9.3 131s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 131s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 131s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 libze1 131s mesa-libgallium mpi-default-bin ocl-icd-libopencl1 openmpi-bin 131s openmpi-common proj-data x11-common 131s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 138 MB of archives. 131s After this operation, 607 MB of additional disk space will be used. 131s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 131s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 132s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 132s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 lammps-data all 20250204+dfsg.1-2 [10.2 MB] 135s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 135s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 libllvm17t64 amd64 1:17.0.6-22build1 [25.9 MB] 137s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build3 [14.3 MB] 137s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.125-1 [21.6 kB] 137s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsakmt1 amd64 6.2.4+ds-1 [66.8 kB] 137s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsa-runtime64-1 amd64 6.1.2-3 [564 kB] 137s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamdhip64-5 amd64 5.7.1-6 [9698 kB] 138s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 138s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 138s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 138s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 138s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 138s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 138s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 138s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 138s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.3.1-1build1 [42.8 kB] 138s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB] 138s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.125-1 [64.9 kB] 138s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build1 [98.8 kB] 138s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10build1 [8360 B] 138s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 138s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 librdmacm1t64 amd64 56.1-1ubuntu1 [71.4 kB] 138s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfabric1 amd64 2.1.0-1.1 [697 kB] 138s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 138s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build2 [860 kB] 138s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 138s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2build1 [8036 B] 138s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2build1 [6446 B] 138s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2build1 [19.7 kB] 138s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2build1 [10.1 kB] 138s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2build1 [11.1 kB] 138s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 138s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.2.3-1ubuntu1 [11.1 MB] 138s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.2.3-1ubuntu1 [34.0 kB] 138s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 138s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.321.0-1 [154 kB] 138s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.2.3-1ubuntu1 [36.9 kB] 138s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-1build2 [65.1 kB] 138s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2build1 [27.6 kB] 138s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 138s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.2.3-1ubuntu1 [110 kB] 138s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-1build2 [40.3 kB] 138s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-1build2 [101 kB] 138s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 138s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 138s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 138s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 138s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 138s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc15 amd64 2.12.2-1 [181 kB] 138s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 138s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 138s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 139s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 139s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 139s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 139s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libibumad3 amd64 56.1-1ubuntu1 [31.3 kB] 139s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libibmad5 amd64 56.1-1ubuntu1 [44.0 kB] 139s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libucx0 amd64 1.19.0+ds-1 [1308 kB] 139s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 139s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libze1 amd64 1.24.1-2 [599 kB] 139s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 139s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-plugins amd64 2.12.2-1 [22.2 kB] 139s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi40 amd64 5.0.8-8ubuntu1 [3384 kB] 139s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 139s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 139s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 139s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-1build2 [32.6 kB] 139s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.6.0-1 [7955 kB] 139s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 139s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 139s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 139s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 140s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 140s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.6.0-1 [1475 kB] 140s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.7 kB] 140s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbmalloc2 amd64 2022.1.0-1 [53.7 kB] 140s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbb12 amd64 2022.1.0-1 [93.5 kB] 140s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 140s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 140s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 140s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 140s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 140s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 140s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 140s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu2 [25.3 MB] 141s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblammps0t64 amd64 20250204+dfsg.1-2 [7956 kB] 142s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 142s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-bin amd64 5.0.8-8ubuntu1 [201 kB] 142s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 142s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 lammps amd64 20250204+dfsg.1-2 [15.6 kB] 142s Fetched 138 MB in 11s (12.3 MB/s) 142s Selecting previously unselected package fonts-dejavu-mono. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78458 files and directories currently installed.) 142s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-mono (2.37-8) ... 142s Selecting previously unselected package fonts-dejavu-core. 142s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-core (2.37-8) ... 142s Selecting previously unselected package fontconfig-config. 142s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 142s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 142s Selecting previously unselected package lammps-data. 142s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ... 142s Unpacking lammps-data (20250204+dfsg.1-2) ... 143s Selecting previously unselected package libaec0:amd64. 143s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 143s Unpacking libaec0:amd64 (1.1.3-1) ... 143s Selecting previously unselected package libllvm17t64:amd64. 143s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-22build1_amd64.deb ... 143s Unpacking libllvm17t64:amd64 (1:17.0.6-22build1) ... 143s Selecting previously unselected package libamd-comgr2:amd64. 143s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_amd64.deb ... 143s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build3) ... 143s Selecting previously unselected package libdrm-amdgpu1:amd64. 143s Preparing to unpack .../07-libdrm-amdgpu1_2.4.125-1_amd64.deb ... 143s Unpacking libdrm-amdgpu1:amd64 (2.4.125-1) ... 143s Selecting previously unselected package libhsakmt1:amd64. 143s Preparing to unpack .../08-libhsakmt1_6.2.4+ds-1_amd64.deb ... 143s Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... 143s Selecting previously unselected package libhsa-runtime64-1:amd64. 143s Preparing to unpack .../09-libhsa-runtime64-1_6.1.2-3_amd64.deb ... 143s Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... 143s Selecting previously unselected package libamdhip64-5:amd64. 143s Preparing to unpack .../10-libamdhip64-5_5.7.1-6_amd64.deb ... 143s Unpacking libamdhip64-5:amd64 (5.7.1-6) ... 143s Selecting previously unselected package libblas3:amd64. 144s Preparing to unpack .../11-libblas3_3.12.1-6build1_amd64.deb ... 144s Unpacking libblas3:amd64 (3.12.1-6build1) ... 144s Selecting previously unselected package libfontconfig1:amd64. 144s Preparing to unpack .../12-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 144s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 144s Selecting previously unselected package libpixman-1-0:amd64. 144s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_amd64.deb ... 144s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 144s Selecting previously unselected package libxcb-render0:amd64. 144s Preparing to unpack .../14-libxcb-render0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxcb-shm0:amd64. 144s Preparing to unpack .../15-libxcb-shm0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxrender1:amd64. 144s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_amd64.deb ... 144s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 144s Selecting previously unselected package libcairo2:amd64. 144s Preparing to unpack .../17-libcairo2_1.18.4-1build1_amd64.deb ... 144s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 144s Selecting previously unselected package libdeflate0:amd64. 144s Preparing to unpack .../18-libdeflate0_1.23-2_amd64.deb ... 144s Unpacking libdeflate0:amd64 (1.23-2) ... 144s Selecting previously unselected package libdouble-conversion3:amd64. 144s Preparing to unpack .../19-libdouble-conversion3_3.3.1-1build1_amd64.deb ... 144s Unpacking libdouble-conversion3:amd64 (3.3.1-1build1) ... 144s Selecting previously unselected package libpciaccess0:amd64. 144s Preparing to unpack .../20-libpciaccess0_0.18.1-1ubuntu2_amd64.deb ... 144s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu2) ... 144s Selecting previously unselected package libdrm-intel1:amd64. 144s Preparing to unpack .../21-libdrm-intel1_2.4.125-1_amd64.deb ... 144s Unpacking libdrm-intel1:amd64 (2.4.125-1) ... 144s Selecting previously unselected package libevent-core-2.1-7t64:amd64. 144s Preparing to unpack .../22-libevent-core-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 144s Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 144s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 144s Preparing to unpack .../23-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 144s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 144s Selecting previously unselected package libpsm2-2. 144s Preparing to unpack .../24-libpsm2-2_11.2.185-2.1_amd64.deb ... 144s Unpacking libpsm2-2 (11.2.185-2.1) ... 144s Selecting previously unselected package librdmacm1t64:amd64. 144s Preparing to unpack .../25-librdmacm1t64_56.1-1ubuntu1_amd64.deb ... 144s Unpacking librdmacm1t64:amd64 (56.1-1ubuntu1) ... 144s Selecting previously unselected package libfabric1:amd64. 144s Preparing to unpack .../26-libfabric1_2.1.0-1.1_amd64.deb ... 144s Unpacking libfabric1:amd64 (2.1.0-1.1) ... 144s Selecting previously unselected package libgomp1:amd64. 144s Preparing to unpack .../27-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 144s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 144s Selecting previously unselected package libfftw3-double3:amd64. 144s Preparing to unpack .../28-libfftw3-double3_3.3.10-2fakesync1build2_amd64.deb ... 144s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build2) ... 144s Selecting previously unselected package libx11-xcb1:amd64. 144s Preparing to unpack .../29-libx11-xcb1_2%3a1.8.12-1build1_amd64.deb ... 144s Unpacking libx11-xcb1:amd64 (2:1.8.12-1build1) ... 144s Selecting previously unselected package libxcb-dri3-0:amd64. 144s Preparing to unpack .../30-libxcb-dri3-0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-dri3-0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxcb-present0:amd64. 144s Preparing to unpack .../31-libxcb-present0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-present0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxcb-randr0:amd64. 144s Preparing to unpack .../32-libxcb-randr0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-randr0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxcb-sync1:amd64. 144s Preparing to unpack .../33-libxcb-sync1_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-sync1:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxcb-xfixes0:amd64. 144s Preparing to unpack .../34-libxcb-xfixes0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-xfixes0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxshmfence1:amd64. 144s Preparing to unpack .../35-libxshmfence1_1.3.3-1_amd64.deb ... 144s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 144s Selecting previously unselected package mesa-libgallium:amd64. 144s Preparing to unpack .../36-mesa-libgallium_25.2.3-1ubuntu1_amd64.deb ... 144s Unpacking mesa-libgallium:amd64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libgbm1:amd64. 144s Preparing to unpack .../37-libgbm1_25.2.3-1ubuntu1_amd64.deb ... 144s Unpacking libgbm1:amd64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libgfortran5:amd64. 144s Preparing to unpack .../38-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 144s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 144s Selecting previously unselected package libvulkan1:amd64. 144s Preparing to unpack .../39-libvulkan1_1.4.321.0-1_amd64.deb ... 144s Unpacking libvulkan1:amd64 (1.4.321.0-1) ... 144s Selecting previously unselected package libgl1-mesa-dri:amd64. 144s Preparing to unpack .../40-libgl1-mesa-dri_25.2.3-1ubuntu1_amd64.deb ... 144s Unpacking libgl1-mesa-dri:amd64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libglvnd0:amd64. 144s Preparing to unpack .../41-libglvnd0_1.7.0-1build2_amd64.deb ... 144s Unpacking libglvnd0:amd64 (1.7.0-1build2) ... 144s Selecting previously unselected package libxcb-glx0:amd64. 144s Preparing to unpack .../42-libxcb-glx0_1.17.0-2build1_amd64.deb ... 144s Unpacking libxcb-glx0:amd64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxxf86vm1:amd64. 144s Preparing to unpack .../43-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 144s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 144s Selecting previously unselected package libglx-mesa0:amd64. 144s Preparing to unpack .../44-libglx-mesa0_25.2.3-1ubuntu1_amd64.deb ... 144s Unpacking libglx-mesa0:amd64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libglx0:amd64. 144s Preparing to unpack .../45-libglx0_1.7.0-1build2_amd64.deb ... 144s Unpacking libglx0:amd64 (1.7.0-1build2) ... 144s Selecting previously unselected package libgl1:amd64. 144s Preparing to unpack .../46-libgl1_1.7.0-1build2_amd64.deb ... 144s Unpacking libgl1:amd64 (1.7.0-1build2) ... 144s Selecting previously unselected package libgl2ps1.4. 144s Preparing to unpack .../47-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 144s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 144s Selecting previously unselected package libglew2.2:amd64. 144s Preparing to unpack .../48-libglew2.2_2.2.0-4build1_amd64.deb ... 144s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 144s Selecting previously unselected package libsz2:amd64. 144s Preparing to unpack .../49-libsz2_1.1.3-1_amd64.deb ... 144s Unpacking libsz2:amd64 (1.1.3-1) ... 144s Selecting previously unselected package libhdf5-310:amd64. 144s Preparing to unpack .../50-libhdf5-310_1.14.5+repack-3build1_amd64.deb ... 144s Unpacking libhdf5-310:amd64 (1.14.5+repack-3build1) ... 144s Selecting previously unselected package libhdf5-hl-310:amd64. 144s Preparing to unpack .../51-libhdf5-hl-310_1.14.5+repack-3build1_amd64.deb ... 144s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 144s Selecting previously unselected package libhwloc15:amd64. 144s Preparing to unpack .../52-libhwloc15_2.12.2-1_amd64.deb ... 144s Unpacking libhwloc15:amd64 (2.12.2-1) ... 144s Selecting previously unselected package libjpeg-turbo8:amd64. 144s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 144s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 144s Selecting previously unselected package libjpeg8:amd64. 144s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_amd64.deb ... 144s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 144s Selecting previously unselected package libjsoncpp26:amd64. 144s Preparing to unpack .../55-libjsoncpp26_1.9.6-3_amd64.deb ... 144s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 145s Selecting previously unselected package libkim-api2:amd64. 145s Preparing to unpack .../56-libkim-api2_2.3.0-1ubuntu1_amd64.deb ... 145s Unpacking libkim-api2:amd64 (2.3.0-1ubuntu1) ... 145s Selecting previously unselected package liblapack3:amd64. 145s Preparing to unpack .../57-liblapack3_3.12.1-6build1_amd64.deb ... 145s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 145s Selecting previously unselected package libnetcdf22:amd64. 145s Preparing to unpack .../58-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 145s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 145s Selecting previously unselected package libibumad3:amd64. 145s Preparing to unpack .../59-libibumad3_56.1-1ubuntu1_amd64.deb ... 145s Unpacking libibumad3:amd64 (56.1-1ubuntu1) ... 145s Selecting previously unselected package libibmad5:amd64. 145s Preparing to unpack .../60-libibmad5_56.1-1ubuntu1_amd64.deb ... 145s Unpacking libibmad5:amd64 (56.1-1ubuntu1) ... 145s Selecting previously unselected package libucx0:amd64. 145s Preparing to unpack .../61-libucx0_1.19.0+ds-1_amd64.deb ... 145s Unpacking libucx0:amd64 (1.19.0+ds-1) ... 145s Selecting previously unselected package libxnvctrl0:amd64. 145s Preparing to unpack .../62-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 145s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 145s Selecting previously unselected package libze1:amd64. 145s Preparing to unpack .../63-libze1_1.24.1-2_amd64.deb ... 145s Unpacking libze1:amd64 (1.24.1-2) ... 145s Selecting previously unselected package ocl-icd-libopencl1:amd64. 145s Preparing to unpack .../64-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... 145s Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... 145s Selecting previously unselected package libhwloc-plugins:amd64. 145s Preparing to unpack .../65-libhwloc-plugins_2.12.2-1_amd64.deb ... 145s Unpacking libhwloc-plugins:amd64 (2.12.2-1) ... 145s Selecting previously unselected package libopenmpi40:amd64. 145s Preparing to unpack .../66-libopenmpi40_5.0.8-8ubuntu1_amd64.deb ... 145s Unpacking libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 145s Selecting previously unselected package libpnetcdf6:amd64. 145s Preparing to unpack .../67-libpnetcdf6_1.14.0-2_amd64.deb ... 145s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 145s Selecting previously unselected package libvoro++1. 145s Preparing to unpack .../68-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 145s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 145s Selecting previously unselected package libogg0:amd64. 145s Preparing to unpack .../69-libogg0_1.3.5-3build1_amd64.deb ... 145s Unpacking libogg0:amd64 (1.3.5-3build1) ... 145s Selecting previously unselected package libopengl0:amd64. 145s Preparing to unpack .../70-libopengl0_1.7.0-1build2_amd64.deb ... 145s Unpacking libopengl0:amd64 (1.7.0-1build2) ... 145s Selecting previously unselected package proj-data. 145s Preparing to unpack .../71-proj-data_9.6.0-1_all.deb ... 145s Unpacking proj-data (9.6.0-1) ... 145s Selecting previously unselected package libjbig0:amd64. 145s Preparing to unpack .../72-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 145s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 145s Selecting previously unselected package liblerc4:amd64. 145s Preparing to unpack .../73-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 145s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 145s Selecting previously unselected package libsharpyuv0:amd64. 145s Preparing to unpack .../74-libsharpyuv0_1.5.0-0.1_amd64.deb ... 145s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 145s Selecting previously unselected package libwebp7:amd64. 145s Preparing to unpack .../75-libwebp7_1.5.0-0.1_amd64.deb ... 145s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 145s Selecting previously unselected package libtiff6:amd64. 145s Preparing to unpack .../76-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 145s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 145s Selecting previously unselected package libproj25:amd64. 145s Preparing to unpack .../77-libproj25_9.6.0-1_amd64.deb ... 145s Unpacking libproj25:amd64 (9.6.0-1) ... 145s Selecting previously unselected package libtbbbind-2-5:amd64. 145s Preparing to unpack .../78-libtbbbind-2-5_2022.1.0-1_amd64.deb ... 145s Unpacking libtbbbind-2-5:amd64 (2022.1.0-1) ... 145s Selecting previously unselected package libtbbmalloc2:amd64. 145s Preparing to unpack .../79-libtbbmalloc2_2022.1.0-1_amd64.deb ... 145s Unpacking libtbbmalloc2:amd64 (2022.1.0-1) ... 145s Selecting previously unselected package libtbb12:amd64. 145s Preparing to unpack .../80-libtbb12_2022.1.0-1_amd64.deb ... 145s 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146s Setting up libxcb-present0:amd64 (1.17.0-2build1) ... 146s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 146s Setting up libblas3:amd64 (3.12.1-6build1) ... 146s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 146s Setting up libllvm17t64:amd64 (1:17.0.6-22build1) ... 146s Setting up libxcb-sync1:amd64 (1.17.0-2build1) ... 146s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 146s Setting up fonts-dejavu-mono (2.37-8) ... 146s Setting up libhwloc15:amd64 (2.12.2-1) ... 146s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 146s Setting up fonts-dejavu-core (2.37-8) ... 146s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 146s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1build2) ... 146s Setting up libgfortran5:amd64 (15.2.0-5ubuntu1) ... 146s Setting up libvulkan1:amd64 (1.4.321.0-1) ... 146s Setting up libwebp7:amd64 (1.5.0-0.1) ... 146s Setting up 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Setting up libtk8.6:amd64 (8.6.17-1) ... 147s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ... 147s Setting up libtbb12:amd64 (2022.1.0-1) ... 147s Setting up libcairo2:amd64 (1.18.4-1build1) ... 147s Setting up libgl1:amd64 (1.7.0-1build2) ... 147s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 147s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 147s Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... 147s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 147s Setting up libamdhip64-5:amd64 (5.7.1-6) ... 147s Setting up libucx0:amd64 (1.19.0+ds-1) ... 147s Setting up libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 147s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 147s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu2) ... 147s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 147s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 147s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 147s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 147s Setting up mpi-default-bin (1.18) ... 147s Setting up liblammps0t64:amd64 (20250204+dfsg.1-2) ... 147s Setting up lammps (20250204+dfsg.1-2) ... 147s Processing triggers for man-db (2.13.1-1) ... 147s Processing triggers for libc-bin (2.42-0ubuntu3) ... 148s autopkgtest [08:45:30]: test crack: [----------------------- 149s LAMMPS (4 Feb 2025) 149s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 149s using 1 OpenMP thread(s) per MPI task 149s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 149s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 149s 2 by 1 by 1 MPI processor grid 149s Created 8141 atoms 149s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 149s create_atoms CPU = 0.001 seconds 149s 302 atoms in group lower 149s 302 atoms in group upper 149s 604 atoms in group boundary 149s 7537 atoms in group mobile 149s 841 atoms in group leftupper 149s 841 atoms in group leftlower 149s Setting atom values ... 149s 841 settings made for type 149s Setting atom values ... 149s 841 settings made for type 149s Setting atom values ... 149s 302 settings made for type 149s Setting atom values ... 149s 302 settings made for type 149s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 149s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 149s Neighbor list info ... 149s update: every = 1 steps, delay = 5 steps, check = yes 149s max neighbors/atom: 2000, page size: 100000 149s master list distance cutoff = 2.8 149s ghost atom cutoff = 2.8 149s binsize = 1.4, bins = 80 56 1 149s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 149s (1) pair lj/cut, perpetual 149s attributes: half, newton on 149s pair build: half/bin/atomonly/newton 149s stencil: half/bin/2d 149s bin: standard 149s Setting up Verlet run ... 149s Unit style : lj 149s Current step : 0 149s Time step : 0.003 149s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 149s Step Temp E_pair E_mol TotEng Press Volume 149s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 149s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 149s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 149s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 149s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 149s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 149s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 149s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 149s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 149s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 149s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 149s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 149s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 150s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 150s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 150s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 150s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 150s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 150s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 150s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 150s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 150s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 150s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 150s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 150s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 151s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 151s Loop time of 2.04505 on 2 procs for 5000 steps with 8141 atoms 151s 151s Performance: 633725.018 tau/day, 2444.927 timesteps/s, 19.904 Matom-step/s 151s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 151s 151s MPI task timing breakdown: 151s Section | min time | avg time | max time |%varavg| %total 151s --------------------------------------------------------------- 151s Pair | 1.4493 | 1.459 | 1.4688 | 0.8 | 71.34 151s Neigh | 0.10422 | 0.10915 | 0.11407 | 1.5 | 5.34 151s Comm | 0.17043 | 0.17185 | 0.17327 | 0.3 | 8.40 151s Output | 0.00090659 | 0.0025552 | 0.0042038 | 3.3 | 0.12 151s Modify | 0.24237 | 0.24383 | 0.2453 | 0.3 | 11.92 151s Other | | 0.05864 | | | 2.87 151s 151s Nlocal: 4070.5 ave 4085 max 4056 min 151s Histogram: 1 0 0 0 0 0 0 0 0 1 151s Nghost: 207 ave 208 max 206 min 151s Histogram: 1 0 0 0 0 0 0 0 0 1 151s Neighs: 35700 ave 35927 max 35473 min 151s Histogram: 1 0 0 0 0 0 0 0 0 1 151s 151s Total # of neighbors = 71400 151s Ave neighs/atom = 8.7704213 151s Neighbor list builds = 106 151s Dangerous builds = 0 151s Total wall time: 0:00:02 151s LAMMPS (4 Feb 2025) 154s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 154s using 1 OpenMP thread(s) per MPI task 154s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 154s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 154s 1 by 1 by 1 MPI processor grid 154s Created 8141 atoms 154s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 154s create_atoms CPU = 0.001 seconds 154s 302 atoms in group lower 154s 302 atoms in group upper 154s 604 atoms in group boundary 154s 7537 atoms in group mobile 154s 841 atoms in group leftupper 154s 841 atoms in group leftlower 154s Setting atom values ... 154s 841 settings made for type 154s Setting atom values ... 154s 841 settings made for type 154s Setting atom values ... 154s 302 settings made for type 154s Setting atom values ... 154s 302 settings made for type 154s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 154s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 154s Neighbor list info ... 154s update: every = 1 steps, delay = 5 steps, check = yes 154s max neighbors/atom: 2000, page size: 100000 154s master list distance cutoff = 2.8 154s ghost atom cutoff = 2.8 154s binsize = 1.4, bins = 80 56 1 154s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 154s (1) pair lj/cut, perpetual 154s attributes: half, newton on 154s pair build: half/bin/atomonly/newton 154s stencil: half/bin/2d 154s bin: standard 154s Setting up Verlet run ... 154s Unit style : lj 154s Current step : 0 154s Time step : 0.003 154s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 154s Step Temp E_pair E_mol TotEng Press Volume 154s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 154s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 154s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 154s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 154s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 154s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 154s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 154s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 154s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 154s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 154s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 154s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 154s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 154s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 154s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 154s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 154s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 154s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 154s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 154s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 154s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 154s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 154s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 155s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 155s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 155s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 155s Loop time of 3.72029 on 1 procs for 5000 steps with 8141 atoms 155s 155s Performance: 348360.306 tau/day, 1343.983 timesteps/s, 10.941 Matom-step/s 155s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 155s 155s MPI task timing breakdown: 155s Section | min time | avg time | max time |%varavg| %total 155s --------------------------------------------------------------- 155s Pair | 2.9437 | 2.9437 | 2.9437 | 0.0 | 79.13 155s Neigh | 0.20127 | 0.20127 | 0.20127 | 0.0 | 5.41 155s Comm | 0.0038843 | 0.0038843 | 0.0038843 | 0.0 | 0.10 155s Output | 0.0013386 | 0.0013386 | 0.0013386 | 0.0 | 0.04 155s Modify | 0.483 | 0.483 | 0.483 | 0.0 | 12.98 155s Other | | 0.08707 | | | 2.34 155s 155s Nlocal: 8141 ave 8141 max 8141 min 155s Histogram: 1 0 0 0 0 0 0 0 0 0 155s Nghost: 0 ave 0 max 0 min 155s Histogram: 1 0 0 0 0 0 0 0 0 0 155s Neighs: 71389 ave 71389 max 71389 min 155s Histogram: 1 0 0 0 0 0 0 0 0 0 155s 155s Total # of neighbors = 71389 155s Ave neighs/atom = 8.7690701 155s Neighbor list builds = 100 155s Dangerous builds = 0 155s Total wall time: 0:00:03 155s run: OK 155s autopkgtest [08:45:37]: test crack: -----------------------] 155s autopkgtest [08:45:37]: test crack: - - - - - - - - - - results - - - - - - - - - - 155s crack PASS 156s autopkgtest [08:45:38]: test dipole: preparing testbed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Solving dependencies... 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 157s autopkgtest [08:45:39]: test dipole: [----------------------- 157s LAMMPS (4 Feb 2025) 157s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 157s using 1 OpenMP thread(s) per MPI task 157s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 157s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 157s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 157s 2 by 1 by 1 MPI processor grid 157s Created 200 atoms 157s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 157s create_atoms CPU = 0.000 seconds 157s Setting atom values ... 157s 200 settings made for mass 157s Setting atom values ... 157s 200 settings made for dipole/random 157s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 157s Neighbor list info ... 157s update: every = 1 steps, delay = 0 steps, check = yes 157s max neighbors/atom: 2000, page size: 100000 157s master list distance cutoff = 2.8 157s ghost atom cutoff = 2.8 157s binsize = 1.4, bins = 13 13 2 157s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 157s (1) pair lj/cut/dipole/cut, perpetual 157s attributes: half, newton on 157s pair build: half/bin/atomonly/newton 157s stencil: half/bin/2d 157s bin: standard 157s Setting up Verlet run ... 157s Unit style : lj 157s Current step : 0 157s Time step : 0.005 157s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 157s Step Temp E_pair c_erot TotEng Press 157s 0 0 -2.1909822 0 -2.1909822 -2.5750971 157s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 157s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 158s 1500 0.4211022 -2.8019061 0.19532181 -2.3829095 0.18067145 158s 2000 0.39019874 -2.7914862 0.22407011 -2.4032384 -0.40912648 158s 2500 0.40189542 -2.8134715 0.24278607 -2.4135855 -0.33547386 158s 3000 0.45253597 -2.8432831 0.22668907 -2.3930098 0.031945804 158s 3500 0.45543566 -2.80999 0.19086399 -2.3568315 0.029485295 158s 4000 0.40085091 -2.7761517 0.21847799 -2.3773051 -0.033769965 158s 4500 0.40189931 -2.7615835 0.20362841 -2.3616937 -0.17414063 158s 5000 0.41734987 -2.7649581 0.19662779 -2.349695 -0.36355203 158s 5500 0.39968404 -2.7679046 0.21787398 -2.370219 -0.2095 158s 6000 0.40475829 -2.8111506 0.26462853 -2.4084161 -0.073266954 158s 6500 0.41521558 -2.7828455 0.21593344 -2.369706 0.044857105 158s 7000 0.37923394 -2.7298781 0.19612107 -2.3525403 -0.41777291 158s 7500 0.42362281 -2.8061905 0.22489406 -2.3846858 0.26268515 158s 8000 0.43091638 -2.8618864 0.27325823 -2.4331247 -0.4441066 158s 8500 0.4921082 -2.8591309 0.21247682 -2.3694833 -0.1929702 158s 9000 0.42828025 -2.7900322 0.20827254 -2.3638934 -0.29757579 158s 9500 0.41689981 -2.7717449 0.21413721 -2.3569296 -0.16341068 158s 10000 0.46694926 -2.8131859 0.21390049 -2.3485714 -0.37713307 158s Loop time of 0.489757 on 2 procs for 10000 steps with 200 atoms 158s 158s Performance: 8820706.434 tau/day, 20418.302 timesteps/s, 4.084 Matom-step/s 158s 99.7% CPU use with 2 MPI tasks x 1 OpenMP threads 158s 158s MPI task timing breakdown: 158s Section | min time | avg time | max time |%varavg| %total 158s --------------------------------------------------------------- 158s Pair | 0.30995 | 0.3274 | 0.34486 | 3.1 | 66.85 158s Neigh | 0.015055 | 0.015372 | 0.015689 | 0.3 | 3.14 158s Comm | 0.077296 | 0.094776 | 0.11226 | 5.7 | 19.35 158s Output | 0.00019405 | 0.00037547 | 0.00055689 | 0.0 | 0.08 158s Modify | 0.035522 | 0.037283 | 0.039044 | 0.9 | 7.61 158s Other | | 0.01455 | | | 2.97 158s 158s Nlocal: 100 ave 101 max 99 min 158s Histogram: 1 0 0 0 0 0 0 0 0 1 158s Nghost: 129 ave 129 max 129 min 158s Histogram: 2 0 0 0 0 0 0 0 0 0 158s Neighs: 827.5 ave 843 max 812 min 158s Histogram: 1 0 0 0 0 0 0 0 0 1 158s 158s Total # of neighbors = 1655 158s Ave neighs/atom = 8.275 158s Neighbor list builds = 679 158s Dangerous builds = 0 158s Total wall time: 0:00:00 158s LAMMPS (4 Feb 2025) 159s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 159s using 1 OpenMP thread(s) per MPI task 159s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 159s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 159s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 159s 1 by 1 by 1 MPI processor grid 159s Created 200 atoms 159s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 159s create_atoms CPU = 0.000 seconds 159s Setting atom values ... 159s 200 settings made for mass 159s Setting atom values ... 159s 200 settings made for dipole/random 159s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 159s Neighbor list info ... 159s update: every = 1 steps, delay = 0 steps, check = yes 159s max neighbors/atom: 2000, page size: 100000 159s master list distance cutoff = 2.8 159s ghost atom cutoff = 2.8 159s binsize = 1.4, bins = 13 13 2 159s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 159s (1) pair lj/cut/dipole/cut, perpetual 159s attributes: half, newton on 159s pair build: half/bin/atomonly/newton 159s stencil: half/bin/2d 159s bin: standard 159s Setting up Verlet run ... 159s Unit style : lj 159s Current step : 0 159s Time step : 0.005 159s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 159s Step Temp E_pair c_erot TotEng Press 159s 0 0 -2.1909822 0 -2.1909822 -2.5750971 159s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 159s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 159s 1500 0.42110221 -2.8019062 0.19532181 -2.3829095 0.18067141 159s 2000 0.39019964 -2.7914873 0.2240704 -2.4032387 -0.40914108 159s 2500 0.40258219 -2.8140936 0.24274448 -2.4135243 -0.33941924 159s 3000 0.41800133 -2.8282056 0.24466746 -2.4122942 -0.090527465 159s 3500 0.40116089 -2.7573067 0.18791549 -2.3581517 -0.10988473 159s 4000 0.44069383 -2.8320262 0.23306586 -2.3935358 -0.16090586 159s 4500 0.39984934 -2.7780055 0.2316558 -2.3801554 -0.060493508 159s 5000 0.38478499 -2.7506484 0.22192236 -2.3677873 -0.20522733 159s 5500 0.41563657 -2.7772758 0.21967501 -2.3637174 -0.21224098 159s 6000 0.4784307 -2.8050644 0.19178566 -2.3290259 -0.084370417 159s 6500 0.45915752 -2.8043874 0.21761744 -2.3475257 0.044744498 159s 7000 0.45492064 -2.7795535 0.20340455 -2.3269074 -0.027924625 159s 7500 0.41266295 -2.7515872 0.22903767 -2.3409876 -0.43730101 159s 8000 0.41905675 -2.7281536 0.19413869 -2.3111921 -0.020762772 159s 8500 0.42951176 -2.7616497 0.22863785 -2.3342855 -0.18867239 159s 9000 0.42532413 -2.748856 0.21378021 -2.3256584 0.015079949 159s 9500 0.42237159 -2.7266142 0.20255034 -2.3063545 -0.15538561 159s 10000 0.40758268 -2.778401 0.2746675 -2.3728562 -0.20811978 159s Loop time of 0.796924 on 1 procs for 10000 steps with 200 atoms 159s 159s Performance: 5420841.183 tau/day, 12548.243 timesteps/s, 2.510 Matom-step/s 159s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 159s 159s MPI task timing breakdown: 159s Section | min time | avg time | max time |%varavg| %total 159s --------------------------------------------------------------- 159s Pair | 0.64003 | 0.64003 | 0.64003 | 0.0 | 80.31 159s Neigh | 0.030556 | 0.030556 | 0.030556 | 0.0 | 3.83 159s Comm | 0.04503 | 0.04503 | 0.04503 | 0.0 | 5.65 159s Output | 0.00023419 | 0.00023419 | 0.00023419 | 0.0 | 0.03 159s Modify | 0.072244 | 0.072244 | 0.072244 | 0.0 | 9.07 159s Other | | 0.008828 | | | 1.11 159s 159s Nlocal: 200 ave 200 max 200 min 159s Histogram: 1 0 0 0 0 0 0 0 0 0 159s Nghost: 162 ave 162 max 162 min 159s Histogram: 1 0 0 0 0 0 0 0 0 0 159s Neighs: 1625 ave 1625 max 1625 min 159s Histogram: 1 0 0 0 0 0 0 0 0 0 159s 159s Total # of neighbors = 1625 159s Ave neighs/atom = 8.125 159s Neighbor list builds = 673 159s Dangerous builds = 0 159s Total wall time: 0:00:00 159s run: OK 159s autopkgtest [08:45:41]: test dipole: -----------------------] 160s dipole PASS 160s autopkgtest [08:45:42]: test dipole: - - - - - - - - - - results - - - - - - - - - - 160s autopkgtest [08:45:42]: test ellipse: preparing testbed 160s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Solving dependencies... 161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s autopkgtest [08:45:44]: test ellipse: [----------------------- 162s LAMMPS (4 Feb 2025) 162s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 162s using 1 OpenMP thread(s) per MPI task 162s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 162s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 162s 2 by 1 by 1 MPI processor grid 162s Created 400 atoms 162s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 162s create_atoms CPU = 0.000 seconds 162s Setting atom values ... 162s 45 settings made for type/fraction 162s Setting atom values ... 162s 355 settings made for mass 162s Setting atom values ... 162s 45 settings made for mass 162s Setting atom values ... 162s 355 settings made for shape 162s Setting atom values ... 162s 45 settings made for shape 162s Setting atom values ... 162s 400 settings made for quat/random 162s 355 atoms in group spheroid 162s 162s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 162s 162s Your simulation uses code contributions which should be cited: 162s - pair gayberne command: doi:10.1063/1.3058435 162s The log file lists these citations in BibTeX format. 162s 162s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 162s 162s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 162s Neighbor list info ... 162s update: every = 1 steps, delay = 0 steps, check = yes 162s max neighbors/atom: 2000, page size: 100000 162s master list distance cutoff = 4.8 162s ghost atom cutoff = 4.8 162s binsize = 2.4, bins = 59 59 3 162s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 162s (1) pair gayberne, perpetual 162s attributes: half, newton on 162s pair build: half/bin/atomonly/newton 162s stencil: half/bin/2d 162s bin: standard 162s Setting up Verlet run ... 162s Unit style : lj 162s Current step : 0 162s Time step : 0.002 162s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 162s Step c_rot E_pair TotEng Press Volume 162s 0 2.2718861 0 2.394 0.04788 20000 162s 100 1.7443419 0 1.8381003 0.035765442 20557.278 162s 200 2.2768798 0 2.3992621 0.046544845 20618.928 162s 300 1.8573086 0 1.9571389 0.04239709 18464.842 162s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 162s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 162s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 162s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 162s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 162s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 162s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 162s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 162s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 163s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 163s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 163s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 163s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 163s 1700 1.9434093 -3.2434441 -1.3043926 0.72465776 1136.9866 163s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 163s 1900 2.0618126 -3.2264372 -1.162807 0.93455597 1155.8306 163s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 163s Loop time of 0.437593 on 2 procs for 2000 steps with 400 atoms 163s 163s Performance: 789774.719 tau/day, 4570.456 timesteps/s, 1.828 Matom-step/s 163s 98.8% CPU use with 2 MPI tasks x 1 OpenMP threads 163s 163s MPI task timing breakdown: 163s Section | min time | avg time | max time |%varavg| %total 163s --------------------------------------------------------------- 163s Pair | 0.24494 | 0.25919 | 0.27344 | 2.8 | 59.23 163s Neigh | 0.010105 | 0.010259 | 0.010413 | 0.2 | 2.34 163s Comm | 0.03986 | 0.054069 | 0.068277 | 6.1 | 12.36 163s Output | 0.012303 | 0.012406 | 0.012508 | 0.1 | 2.83 163s Modify | 0.095064 | 0.095466 | 0.095869 | 0.1 | 21.82 163s Other | | 0.006204 | | | 1.42 163s 163s Nlocal: 200 ave 204 max 196 min 163s Histogram: 1 0 0 0 0 0 0 0 0 1 163s Nghost: 198.5 ave 200 max 197 min 163s Histogram: 1 0 0 0 0 0 0 0 0 1 163s Neighs: 1510.5 ave 1546 max 1475 min 163s Histogram: 1 0 0 0 0 0 0 0 0 1 163s 163s Total # of neighbors = 3021 163s Ave neighs/atom = 7.5525 163s Neighbor list builds = 351 163s Dangerous builds = 0 163s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 163s Setting up Verlet run ... 163s Unit style : lj 163s Current step : 2000 163s Time step : 0.002 163s Per MPI rank memory allocation (min/avg/max) = 6.898 | 6.898 | 6.898 Mbytes 163s Step c_rot E_pair TotEng Press Volume 163s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 163s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 163s 2200 1.9098636 -3.4103342 -1.5286928 0.58806421 1125.7713 163s 2300 1.9069019 -3.4099452 -1.610028 0.63472536 1125.7713 163s 2400 1.9773105 -3.4856993 -1.5268536 0.68904913 1125.7713 163s 2500 2.0027582 -3.5144592 -1.4900205 0.59925284 1125.7713 163s 2600 1.9616624 -3.4744356 -1.5230915 0.26873751 1125.7713 163s 2700 1.8601147 -3.3625731 -1.487211 0.68399849 1125.7713 163s 2800 1.8194349 -3.3190942 -1.5148089 0.6253534 1125.7713 163s 2900 1.8465285 -3.3451867 -1.5508324 0.60146161 1125.7713 163s 3000 1.8894697 -3.3918161 -1.5180286 0.6121204 1125.7713 163s 3100 1.8667782 -3.3664981 -1.5276073 0.54220867 1125.7713 163s 3200 1.8235755 -3.3205753 -1.5178132 0.82786428 1125.7713 163s 3300 1.7937373 -3.2889154 -1.4975068 0.57067419 1125.7713 163s 3400 1.828955 -3.3291496 -1.5067653 1.0360542 1125.7713 163s 3500 1.8536352 -3.3525756 -1.5177124 0.56578139 1125.7713 163s 3600 1.7698175 -3.2647143 -1.5345765 0.50355355 1125.7713 163s 3700 1.7690567 -3.2653073 -1.4812992 0.7916524 1125.7713 163s 3800 1.8637674 -3.3670314 -1.5049293 0.58377083 1125.7713 163s 3900 1.9053975 -3.4123772 -1.4973185 0.64862786 1125.7713 163s 4000 1.878375 -3.3835516 -1.5382418 0.73838477 1125.7713 163s Loop time of 0.428713 on 2 procs for 2000 steps with 400 atoms 163s 163s Performance: 806133.902 tau/day, 4665.127 timesteps/s, 1.866 Matom-step/s 163s 98.6% CPU use with 2 MPI tasks x 1 OpenMP threads 163s 163s MPI task timing breakdown: 163s Section | min time | avg time | max time |%varavg| %total 163s --------------------------------------------------------------- 163s Pair | 0.29158 | 0.30319 | 0.3148 | 2.1 | 70.72 163s Neigh | 0.0029808 | 0.0029969 | 0.003013 | 0.0 | 0.70 163s Comm | 0.041569 | 0.052812 | 0.064055 | 4.9 | 12.32 163s Output | 0.013114 | 0.013201 | 0.013289 | 0.1 | 3.08 163s Modify | 0.049983 | 0.051109 | 0.052235 | 0.5 | 11.92 163s Other | | 0.005404 | | | 1.26 163s 163s Nlocal: 200 ave 203 max 197 min 163s Histogram: 1 0 0 0 0 0 0 0 0 1 163s Nghost: 207.5 ave 228 max 187 min 163s Histogram: 1 0 0 0 0 0 0 0 0 1 163s Neighs: 1548.5 ave 1608 max 1489 min 163s Histogram: 1 0 0 0 0 0 0 0 0 1 163s 163s Total # of neighbors = 3097 163s Ave neighs/atom = 7.7425 163s Neighbor list builds = 45 163s Dangerous builds = 0 163s Total wall time: 0:00:00 163s LAMMPS (4 Feb 2025) 164s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 164s using 1 OpenMP thread(s) per MPI task 164s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 164s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 164s 1 by 1 by 1 MPI processor grid 164s Created 400 atoms 164s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 164s create_atoms CPU = 0.000 seconds 164s Setting atom values ... 164s 45 settings made for type/fraction 164s Setting atom values ... 164s 355 settings made for mass 164s Setting atom values ... 164s 45 settings made for mass 164s Setting atom values ... 164s 355 settings made for shape 164s Setting atom values ... 164s 45 settings made for shape 164s Setting atom values ... 164s 400 settings made for quat/random 164s 355 atoms in group spheroid 164s 164s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 164s 164s Your simulation uses code contributions which should be cited: 164s - pair gayberne command: doi:10.1063/1.3058435 164s The log file lists these citations in BibTeX format. 164s 164s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 164s 164s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 164s Neighbor list info ... 164s update: every = 1 steps, delay = 0 steps, check = yes 164s max neighbors/atom: 2000, page size: 100000 164s master list distance cutoff = 4.8 164s ghost atom cutoff = 4.8 164s binsize = 2.4, bins = 59 59 3 164s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 164s (1) pair gayberne, perpetual 164s attributes: half, newton on 164s pair build: half/bin/atomonly/newton 164s stencil: half/bin/2d 164s bin: standard 164s Setting up Verlet run ... 164s Unit style : lj 164s Current step : 0 164s Time step : 0.002 164s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 164s Step c_rot E_pair TotEng Press Volume 164s 0 2.2718861 0 2.394 0.04788 20000 164s 100 1.7443419 0 1.8381003 0.035765442 20557.278 164s 200 2.2768798 0 2.3992621 0.046544845 20618.928 164s 300 1.8573086 0 1.9571389 0.04239709 18464.842 164s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 164s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 164s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 164s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 164s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 164s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 164s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 164s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 164s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 164s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 164s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 164s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 164s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 164s 1700 1.9434093 -3.2434441 -1.3043926 0.72465775 1136.9866 164s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 164s 1900 2.0618126 -3.2264372 -1.162807 0.93455596 1155.8306 164s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 164s Loop time of 0.732477 on 1 procs for 2000 steps with 400 atoms 164s 164s Performance: 471823.546 tau/day, 2730.460 timesteps/s, 1.092 Matom-step/s 164s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 164s 164s MPI task timing breakdown: 164s Section | min time | avg time | max time |%varavg| %total 164s --------------------------------------------------------------- 164s Pair | 0.50283 | 0.50283 | 0.50283 | 0.0 | 68.65 165s Neigh | 0.021805 | 0.021805 | 0.021805 | 0.0 | 2.98 165s Comm | 0.014256 | 0.014256 | 0.014256 | 0.0 | 1.95 165s Output | 0.018154 | 0.018154 | 0.018154 | 0.0 | 2.48 165s Modify | 0.17112 | 0.17112 | 0.17112 | 0.0 | 23.36 165s Other | | 0.004315 | | | 0.59 165s 165s Nlocal: 400 ave 400 max 400 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s Nghost: 247 ave 247 max 247 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s Neighs: 3021 ave 3021 max 3021 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s 165s Total # of neighbors = 3021 165s Ave neighs/atom = 7.5525 165s Neighbor list builds = 351 165s Dangerous builds = 0 165s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 165s Setting up Verlet run ... 165s Unit style : lj 165s Current step : 2000 165s Time step : 0.002 165s Per MPI rank memory allocation (min/avg/max) = 6.939 | 6.939 | 6.939 Mbytes 165s Step c_rot E_pair TotEng Press Volume 165s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 165s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 165s 2200 1.9098635 -3.4103342 -1.5286928 0.58806422 1125.7713 165s 2300 1.9069019 -3.4099452 -1.610028 0.63472566 1125.7713 165s 2400 1.9773106 -3.4856993 -1.5268537 0.6890488 1125.7713 165s 2500 2.0027577 -3.5144587 -1.4900206 0.59925482 1125.7713 165s 2600 1.9616627 -3.4744359 -1.5230914 0.26873643 1125.7713 165s 2700 1.8601143 -3.3625727 -1.4872111 0.68399923 1125.7713 165s 2800 1.8194315 -3.3190907 -1.5148099 0.62535541 1125.7713 165s 2900 1.8465014 -3.3451581 -1.5508257 0.60156027 1125.7713 165s 3000 1.8894895 -3.391836 -1.5180354 0.61205823 1125.7713 165s 3100 1.8668465 -3.3665673 -1.5276094 0.54215927 1125.7713 165s 3200 1.8233438 -3.3203287 -1.5178269 0.82854887 1125.7713 165s 3300 1.794649 -3.2898698 -1.4973919 0.56704285 1125.7713 165s 3400 1.8290008 -3.3295346 -1.5070098 1.0356016 1125.7713 165s 3500 1.8535551 -3.3522046 -1.5121703 0.5801663 1125.7713 165s 3600 1.7849961 -3.2815422 -1.5326244 0.45764466 1125.7713 165s 3700 1.7695363 -3.2652329 -1.4772023 0.84882871 1125.7713 165s 3800 1.8713051 -3.3743092 -1.5234548 0.38004095 1125.7713 165s 3900 1.9336013 -3.4411866 -1.4980326 0.64679675 1125.7713 165s 4000 1.9271117 -3.4346745 -1.5345035 0.4492419 1125.7713 165s Loop time of 0.754643 on 1 procs for 2000 steps with 400 atoms 165s 165s Performance: 457964.806 tau/day, 2650.259 timesteps/s, 1.060 Matom-step/s 165s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 165s 165s MPI task timing breakdown: 165s Section | min time | avg time | max time |%varavg| %total 165s --------------------------------------------------------------- 165s Pair | 0.6113 | 0.6113 | 0.6113 | 0.0 | 81.00 165s Neigh | 0.005794 | 0.005794 | 0.005794 | 0.0 | 0.77 165s Comm | 0.013562 | 0.013562 | 0.013562 | 0.0 | 1.80 165s Output | 0.01762 | 0.01762 | 0.01762 | 0.0 | 2.33 165s Modify | 0.10314 | 0.10314 | 0.10314 | 0.0 | 13.67 165s Other | | 0.003229 | | | 0.43 165s 165s Nlocal: 400 ave 400 max 400 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s Nghost: 242 ave 242 max 242 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s Neighs: 3080 ave 3080 max 3080 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s 165s Total # of neighbors = 3080 165s Ave neighs/atom = 7.7 165s Neighbor list builds = 45 165s Dangerous builds = 0 165s Total wall time: 0:00:01 165s LAMMPS (4 Feb 2025) 165s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 165s using 1 OpenMP thread(s) per MPI task 165s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 165s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 165s 2 by 1 by 1 MPI processor grid 165s Created 400 atoms 165s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 165s create_atoms CPU = 0.000 seconds 165s Setting atom values ... 165s 45 settings made for type/fraction 165s Setting atom values ... 165s 355 settings made for mass 165s Setting atom values ... 165s 45 settings made for mass 165s Setting atom values ... 165s 355 settings made for shape 165s Setting atom values ... 165s 45 settings made for shape 165s Setting atom values ... 165s 400 settings made for quat/random 165s 355 atoms in group spheroid 165s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 165s Neighbor list info ... 165s update: every = 1 steps, delay = 0 steps, check = yes 165s max neighbors/atom: 2000, page size: 100000 165s master list distance cutoff = 4.8 165s ghost atom cutoff = 4.8 165s binsize = 2.4, bins = 59 59 3 165s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 165s (1) pair resquared, perpetual 165s attributes: half, newton on 165s pair build: half/bin/atomonly/newton 165s stencil: half/bin/2d 165s bin: standard 165s Setting up Verlet run ... 165s Unit style : lj 165s Current step : 0 165s Time step : 0.002 165s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 165s Step c_rot E_pair TotEng Press Volume 165s 0 2.2718861 0 2.394 0.04788 20000 165s 100 1.7443419 0 1.8381003 0.035765442 20557.278 165s 200 2.2768798 0 2.3992621 0.046544845 20618.928 165s 300 1.8573086 0 1.9571389 0.04239709 18464.842 165s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 165s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 165s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 165s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 165s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 165s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 165s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 165s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 165s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 165s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 165s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 166s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 166s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 166s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 166s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 166s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 166s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 166s Loop time of 0.646092 on 2 procs for 2000 steps with 400 atoms 166s 166s Performance: 534908.619 tau/day, 3095.536 timesteps/s, 1.238 Matom-step/s 166s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 166s 166s MPI task timing breakdown: 166s Section | min time | avg time | max time |%varavg| %total 166s --------------------------------------------------------------- 166s Pair | 0.45198 | 0.46128 | 0.47059 | 1.4 | 71.40 166s Neigh | 0.010555 | 0.011106 | 0.011656 | 0.5 | 1.72 166s Comm | 0.040763 | 0.05073 | 0.060696 | 4.4 | 7.85 166s Output | 0.01438 | 0.014502 | 0.014624 | 0.1 | 2.24 166s Modify | 0.098998 | 0.10036 | 0.10172 | 0.4 | 15.53 166s Other | | 0.008111 | | | 1.26 166s 166s Nlocal: 200 ave 206 max 194 min 166s Histogram: 1 0 0 0 0 0 0 0 0 1 166s Nghost: 168.5 ave 169 max 168 min 166s Histogram: 1 0 0 0 0 0 0 0 0 1 166s Neighs: 941 ave 998 max 884 min 166s Histogram: 1 0 0 0 0 0 0 0 0 1 166s 166s Total # of neighbors = 1882 166s Ave neighs/atom = 4.705 166s Neighbor list builds = 415 166s Dangerous builds = 0 166s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 166s Setting up Verlet run ... 166s Unit style : lj 166s Current step : 2000 166s Time step : 0.002 166s Per MPI rank memory allocation (min/avg/max) = 6.889 | 6.889 | 6.889 Mbytes 166s Step c_rot E_pair TotEng Press Volume 166s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 166s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 166s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 166s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 166s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 166s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 166s 2600 1.9587508 0.18695271 2.1506896 1.3513902 1669.0751 166s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 166s 2800 1.9870267 0.15716585 2.1207709 1.2045104 1669.0751 166s 2900 1.9230662 0.224487 2.1353571 1.4964288 1669.0751 166s 3000 2.0042113 0.13903203 2.1149787 1.2100649 1669.0751 166s 3100 1.9543695 0.19149462 2.0984705 1.3409712 1669.0751 166s 3200 1.9991114 0.14441986 2.1292354 1.1756472 1669.0751 166s 3300 1.9629782 0.18246612 2.1463675 1.3162684 1669.0751 166s 3400 1.9403529 0.20630278 2.168704 1.4952817 1669.0751 166s 3500 1.9887414 0.15531284 2.1485278 1.2530438 1669.0751 166s 3600 1.9732705 0.17171749 2.1755758 1.2958612 1669.0751 167s 3700 2.0072859 0.13576438 2.1212392 1.1421261 1669.0751 167s 3800 1.9581319 0.18762046 2.1743395 1.371088 1669.0751 167s 3900 1.9761472 0.16864775 2.1429629 1.3037468 1669.0751 167s 4000 1.9615776 0.18391221 2.1244703 1.4180052 1669.0751 167s Loop time of 0.994762 on 2 procs for 2000 steps with 400 atoms 167s 167s Performance: 347419.857 tau/day, 2010.532 timesteps/s, 804.213 katom-step/s 167s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 167s 167s MPI task timing breakdown: 167s Section | min time | avg time | max time |%varavg| %total 167s --------------------------------------------------------------- 167s Pair | 0.80667 | 0.82711 | 0.84755 | 2.2 | 83.15 167s Neigh | 0.0024406 | 0.0025668 | 0.002693 | 0.2 | 0.26 167s Comm | 0.071897 | 0.092791 | 0.11369 | 6.9 | 9.33 167s Output | 0.014529 | 0.014599 | 0.014669 | 0.1 | 1.47 167s Modify | 0.05149 | 0.05173 | 0.05197 | 0.1 | 5.20 167s Other | | 0.005967 | | | 0.60 167s 167s Nlocal: 200 ave 204 max 196 min 167s Histogram: 1 0 0 0 0 0 0 0 0 1 167s Nghost: 159.5 ave 161 max 158 min 167s Histogram: 1 0 0 0 0 0 0 0 0 1 167s Neighs: 936 ave 1007 max 865 min 167s Histogram: 1 0 0 0 0 0 0 0 0 1 167s 167s Total # of neighbors = 1872 167s Ave neighs/atom = 4.68 167s Neighbor list builds = 50 167s Dangerous builds = 0 167s Total wall time: 0:00:01 167s LAMMPS (4 Feb 2025) 168s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 168s using 1 OpenMP thread(s) per MPI task 168s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 168s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 168s 1 by 1 by 1 MPI processor grid 168s Created 400 atoms 168s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 168s create_atoms CPU = 0.000 seconds 168s Setting atom values ... 168s 45 settings made for type/fraction 168s Setting atom values ... 168s 355 settings made for mass 168s Setting atom values ... 168s 45 settings made for mass 168s Setting atom values ... 168s 355 settings made for shape 168s Setting atom values ... 168s 45 settings made for shape 168s Setting atom values ... 168s 400 settings made for quat/random 168s 355 atoms in group spheroid 168s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 168s Neighbor list info ... 168s update: every = 1 steps, delay = 0 steps, check = yes 168s max neighbors/atom: 2000, page size: 100000 168s master list distance cutoff = 4.8 168s ghost atom cutoff = 4.8 168s binsize = 2.4, bins = 59 59 3 168s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 168s (1) pair resquared, perpetual 168s attributes: half, newton on 168s pair build: half/bin/atomonly/newton 168s stencil: half/bin/2d 168s bin: standard 168s Setting up Verlet run ... 168s Unit style : lj 168s Current step : 0 168s Time step : 0.002 168s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 168s Step c_rot E_pair TotEng Press Volume 168s 0 2.2718861 0 2.394 0.04788 20000 168s 100 1.7443419 0 1.8381003 0.035765442 20557.278 168s 200 2.2768798 0 2.3992621 0.046544845 20618.928 168s 300 1.8573086 0 1.9571389 0.04239709 18464.842 168s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 168s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 168s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 168s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 168s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 168s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 168s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 168s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 168s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 168s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 168s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 168s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 168s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 168s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 168s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 168s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 168s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 168s Loop time of 1.12932 on 1 procs for 2000 steps with 400 atoms 168s 168s Performance: 306025.267 tau/day, 1770.980 timesteps/s, 708.392 katom-step/s 168s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 168s 168s MPI task timing breakdown: 168s Section | min time | avg time | max time |%varavg| %total 168s --------------------------------------------------------------- 168s Pair | 0.8984 | 0.8984 | 0.8984 | 0.0 | 79.55 168s Neigh | 0.023452 | 0.023452 | 0.023452 | 0.0 | 2.08 168s Comm | 0.011201 | 0.011201 | 0.011201 | 0.0 | 0.99 168s Output | 0.018042 | 0.018042 | 0.018042 | 0.0 | 1.60 168s Modify | 0.1739 | 0.1739 | 0.1739 | 0.0 | 15.40 170s Other | | 0.004321 | | | 0.38 170s 170s Nlocal: 400 ave 400 max 400 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s Nghost: 212 ave 212 max 212 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s Neighs: 1882 ave 1882 max 1882 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s 170s Total # of neighbors = 1882 170s Ave neighs/atom = 4.705 170s Neighbor list builds = 415 170s Dangerous builds = 0 170s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 170s Setting up Verlet run ... 170s Unit style : lj 170s Current step : 2000 170s Time step : 0.002 170s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 170s Step c_rot E_pair TotEng Press Volume 170s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 170s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 170s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 170s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 170s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 170s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 170s 2600 1.9587508 0.18695272 2.1506896 1.3513902 1669.0751 170s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 170s 2800 1.9870267 0.15716584 2.1207709 1.2045103 1669.0751 170s 2900 1.9230661 0.22448715 2.1353571 1.4964295 1669.0751 170s 3000 2.0042113 0.13903205 2.1149788 1.2100651 1669.0751 170s 3100 1.9543696 0.19149451 2.0984704 1.3409708 1669.0751 170s 3200 1.9991114 0.14441986 2.1292353 1.1756471 1669.0751 170s 3300 1.9629782 0.18246604 2.1463674 1.3162682 1669.0751 170s 3400 1.9403526 0.2063031 2.1687041 1.4952828 1669.0751 170s 3500 1.9887417 0.15531257 2.1485281 1.2530419 1669.0751 170s 3600 1.9732713 0.17171668 2.1755748 1.2958589 1669.0751 170s 3700 2.0072841 0.13576627 2.1212376 1.1421332 1669.0751 170s 3800 1.9581293 0.18762314 2.1743434 1.3710999 1669.0751 170s 3900 1.9761567 0.16863762 2.1429558 1.303685 1669.0751 170s 4000 1.9615813 0.18390829 2.1244694 1.4179775 1669.0751 170s Loop time of 1.73751 on 1 procs for 2000 steps with 400 atoms 170s 170s Performance: 198905.528 tau/day, 1151.074 timesteps/s, 460.429 katom-step/s 170s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 170s 170s MPI task timing breakdown: 170s Section | min time | avg time | max time |%varavg| %total 170s --------------------------------------------------------------- 170s Pair | 1.5978 | 1.5978 | 1.5978 | 0.0 | 91.96 170s Neigh | 0.005345 | 0.005345 | 0.005345 | 0.0 | 0.31 170s Comm | 0.012461 | 0.012461 | 0.012461 | 0.0 | 0.72 170s Output | 0.016879 | 0.016879 | 0.016879 | 0.0 | 0.97 170s Modify | 0.10151 | 0.10151 | 0.10151 | 0.0 | 5.84 170s Other | | 0.003515 | | | 0.20 170s 170s Nlocal: 400 ave 400 max 400 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s Nghost: 206 ave 206 max 206 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s Neighs: 1872 ave 1872 max 1872 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s 170s Total # of neighbors = 1872 170s Ave neighs/atom = 4.68 170s Neighbor list builds = 50 170s Dangerous builds = 0 170s Total wall time: 0:00:02 170s run: OK 170s autopkgtest [08:45:52]: test ellipse: -----------------------] 171s autopkgtest [08:45:53]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 171s ellipse PASS 171s autopkgtest [08:45:53]: test flow: preparing testbed 171s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Solving dependencies... 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [08:45:55]: test flow: [----------------------- 173s LAMMPS (4 Feb 2025) 173s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 173s using 1 OpenMP thread(s) per MPI task 173s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 173s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 173s 2 by 1 by 1 MPI processor grid 173s Created 420 atoms 173s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 173s create_atoms CPU = 0.000 seconds 173s 60 atoms in group lower 173s 60 atoms in group upper 173s 120 atoms in group boundary 173s 300 atoms in group flow 173s Setting atom values ... 173s 60 settings made for type 173s Setting atom values ... 173s 60 settings made for type 173s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 173s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 173s Neighbor list info ... 173s update: every = 1 steps, delay = 5 steps, check = yes 173s max neighbors/atom: 2000, page size: 100000 173s master list distance cutoff = 1.42246 173s ghost atom cutoff = 1.42246 173s binsize = 0.71123, bins = 37 32 1 173s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 173s (1) pair lj/cut, perpetual 173s attributes: half, newton on 173s pair build: half/bin/atomonly/newton 173s stencil: half/bin/2d 173s bin: standard 173s Setting up Verlet run ... 173s Unit style : lj 173s Current step : 0 173s Time step : 0.003 173s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 173s Step Temp E_pair E_mol TotEng Press Volume 173s 0 1 0 0 0.71190476 0.52314537 571.54286 173s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 173s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 173s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 173s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 173s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 173s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 173s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 173s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 173s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 173s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 173s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 173s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 173s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 173s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 173s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 173s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 173s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 173s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 173s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 173s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 173s Loop time of 0.134127 on 2 procs for 10000 steps with 420 atoms 173s 173s Performance: 19325020.140 tau/day, 74556.405 timesteps/s, 31.314 Matom-step/s 173s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 173s 173s MPI task timing breakdown: 173s Section | min time | avg time | max time |%varavg| %total 173s --------------------------------------------------------------- 173s Pair | 0.029407 | 0.029483 | 0.029558 | 0.0 | 21.98 173s Neigh | 0.018366 | 0.01855 | 0.018733 | 0.1 | 13.83 173s Comm | 0.034827 | 0.035206 | 0.035585 | 0.2 | 26.25 173s Output | 0.00021512 | 0.00045449 | 0.00069387 | 0.0 | 0.34 173s Modify | 0.039606 | 0.039675 | 0.039743 | 0.0 | 29.58 173s Other | | 0.01076 | | | 8.02 173s 173s Nlocal: 210 ave 213 max 207 min 173s Histogram: 1 0 0 0 0 0 0 0 0 1 173s Nghost: 50.5 ave 51 max 50 min 173s Histogram: 1 0 0 0 0 0 0 0 0 1 173s Neighs: 480.5 ave 492 max 469 min 173s Histogram: 1 0 0 0 0 0 0 0 0 1 173s 173s Total # of neighbors = 961 173s Ave neighs/atom = 2.2880952 173s Neighbor list builds = 964 173s Dangerous builds = 0 173s Total wall time: 0:00:00 174s LAMMPS (4 Feb 2025) 174s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 174s using 1 OpenMP thread(s) per MPI task 174s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 174s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 174s 1 by 1 by 1 MPI processor grid 174s Created 420 atoms 174s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 174s create_atoms CPU = 0.000 seconds 174s 60 atoms in group lower 174s 60 atoms in group upper 174s 120 atoms in group boundary 174s 300 atoms in group flow 174s Setting atom values ... 174s 60 settings made for type 174s Setting atom values ... 174s 60 settings made for type 174s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 174s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 174s Neighbor list info ... 174s update: every = 1 steps, delay = 5 steps, check = yes 174s max neighbors/atom: 2000, page size: 100000 174s master list distance cutoff = 1.42246 174s ghost atom cutoff = 1.42246 174s binsize = 0.71123, bins = 37 32 1 174s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 174s (1) pair lj/cut, perpetual 174s attributes: half, newton on 174s pair build: half/bin/atomonly/newton 174s stencil: half/bin/2d 174s bin: standard 174s Setting up Verlet run ... 174s Unit style : lj 174s Current step : 0 174s Time step : 0.003 174s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 174s Step Temp E_pair E_mol TotEng Press Volume 174s 0 1 0 0 0.71190476 0.52314537 571.54286 174s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 174s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 174s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 174s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 174s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 174s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 174s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 174s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 174s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 174s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 174s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 174s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 174s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 174s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 174s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 174s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 174s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 174s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 174s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 174s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 174s Loop time of 0.214493 on 1 procs for 10000 steps with 420 atoms 174s 174s Performance: 12084305.204 tau/day, 46621.548 timesteps/s, 19.581 Matom-step/s 174s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 174s 174s MPI task timing breakdown: 174s Section | min time | avg time | max time |%varavg| %total 174s --------------------------------------------------------------- 174s Pair | 0.06658 | 0.06658 | 0.06658 | 0.0 | 31.04 174s Neigh | 0.041793 | 0.041793 | 0.041793 | 0.0 | 19.48 174s Comm | 0.0090777 | 0.0090777 | 0.0090777 | 0.0 | 4.23 174s Output | 0.00034981 | 0.00034981 | 0.00034981 | 0.0 | 0.16 174s Modify | 0.083067 | 0.083067 | 0.083067 | 0.0 | 38.73 174s Other | | 0.01363 | | | 6.35 174s 174s Nlocal: 420 ave 420 max 420 min 174s Histogram: 1 0 0 0 0 0 0 0 0 0 174s Nghost: 46 ave 46 max 46 min 174s Histogram: 1 0 0 0 0 0 0 0 0 0 174s Neighs: 952 ave 952 max 952 min 174s Histogram: 1 0 0 0 0 0 0 0 0 0 174s 174s Total # of neighbors = 952 174s Ave neighs/atom = 2.2666667 174s Neighbor list builds = 996 174s Dangerous builds = 0 174s Total wall time: 0:00:00 174s LAMMPS (4 Feb 2025) 174s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 174s using 1 OpenMP thread(s) per MPI task 174s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 174s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 174s 2 by 1 by 1 MPI processor grid 174s Created 420 atoms 174s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 174s create_atoms CPU = 0.000 seconds 174s 60 atoms in group lower 174s 60 atoms in group upper 174s 120 atoms in group boundary 174s 300 atoms in group flow 174s Setting atom values ... 174s 60 settings made for type 174s Setting atom values ... 174s 60 settings made for type 174s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 174s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 174s Neighbor list info ... 174s update: every = 1 steps, delay = 5 steps, check = yes 174s max neighbors/atom: 2000, page size: 100000 174s master list distance cutoff = 1.42246 174s ghost atom cutoff = 1.42246 174s binsize = 0.71123, bins = 37 32 1 174s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 174s (1) pair lj/cut, perpetual 174s attributes: half, newton on 174s pair build: half/bin/atomonly/newton 174s stencil: half/bin/2d 174s bin: standard 174s Setting up Verlet run ... 174s Unit style : lj 174s Current step : 0 174s Time step : 0.003 174s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 174s Step Temp E_pair E_mol TotEng Press Volume 174s 0 1 0 0 0.71190476 0.52314537 571.54286 174s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 174s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 174s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 174s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 174s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 174s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 174s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 174s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 174s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 174s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 174s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 174s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 174s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 174s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 174s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 174s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 174s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 174s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 174s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 174s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 174s Loop time of 0.158272 on 2 procs for 10000 steps with 420 atoms 174s 174s Performance: 16376855.971 tau/day, 63182.315 timesteps/s, 26.537 Matom-step/s 174s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 174s 174s MPI task timing breakdown: 174s Section | min time | avg time | max time |%varavg| %total 174s --------------------------------------------------------------- 174s Pair | 0.031528 | 0.032085 | 0.032641 | 0.3 | 20.27 174s Neigh | 0.011483 | 0.011607 | 0.011731 | 0.1 | 7.33 174s Comm | 0.032677 | 0.033813 | 0.034949 | 0.6 | 21.36 174s Output | 0.00022999 | 0.00046277 | 0.00069556 | 0.0 | 0.29 174s Modify | 0.068102 | 0.068336 | 0.068571 | 0.1 | 43.18 174s Other | | 0.01197 | | | 7.56 174s 174s Nlocal: 210 ave 213 max 207 min 174s Histogram: 1 0 0 0 0 0 0 0 0 1 174s Nghost: 50 ave 51 max 49 min 174s Histogram: 1 0 0 0 0 0 0 0 0 1 174s Neighs: 558.5 ave 573 max 544 min 174s Histogram: 1 0 0 0 0 0 0 0 0 1 174s 174s Total # of neighbors = 1117 174s Ave neighs/atom = 2.6595238 174s Neighbor list builds = 562 174s Dangerous builds = 0 174s Total wall time: 0:00:00 174s LAMMPS (4 Feb 2025) 175s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 175s using 1 OpenMP thread(s) per MPI task 175s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 175s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 175s 1 by 1 by 1 MPI processor grid 175s Created 420 atoms 175s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 175s create_atoms CPU = 0.000 seconds 175s 60 atoms in group lower 175s 60 atoms in group upper 175s 120 atoms in group boundary 175s 300 atoms in group flow 175s Setting atom values ... 175s 60 settings made for type 175s Setting atom values ... 175s 60 settings made for type 175s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 175s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 175s Neighbor list info ... 175s update: every = 1 steps, delay = 5 steps, check = yes 175s max neighbors/atom: 2000, page size: 100000 175s master list distance cutoff = 1.42246 175s ghost atom cutoff = 1.42246 175s binsize = 0.71123, bins = 37 32 1 175s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 175s (1) pair lj/cut, perpetual 175s attributes: half, newton on 175s pair build: half/bin/atomonly/newton 175s stencil: half/bin/2d 175s bin: standard 175s Setting up Verlet run ... 175s Unit style : lj 175s Current step : 0 175s Time step : 0.003 175s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 175s Step Temp E_pair E_mol TotEng Press Volume 175s 0 1 0 0 0.71190476 0.52314537 571.54286 175s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 175s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 175s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 175s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 175s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 175s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 175s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 175s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 175s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 175s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 175s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 175s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 175s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 175s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 175s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 175s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 175s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 175s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 175s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 175s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 175s Loop time of 0.229192 on 1 procs for 10000 steps with 420 atoms 175s 175s Performance: 11309281.299 tau/day, 43631.486 timesteps/s, 18.325 Matom-step/s 175s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 175s 175s MPI task timing breakdown: 175s Section | min time | avg time | max time |%varavg| %total 175s --------------------------------------------------------------- 175s Pair | 0.063278 | 0.063278 | 0.063278 | 0.0 | 27.61 175s Neigh | 0.022673 | 0.022673 | 0.022673 | 0.0 | 9.89 175s Comm | 0.0068347 | 0.0068347 | 0.0068347 | 0.0 | 2.98 175s Output | 0.00020213 | 0.00020213 | 0.00020213 | 0.0 | 0.09 175s Modify | 0.12585 | 0.12585 | 0.12585 | 0.0 | 54.91 175s Other | | 0.01036 | | | 4.52 175s 175s Nlocal: 420 ave 420 max 420 min 175s Histogram: 1 0 0 0 0 0 0 0 0 0 175s Nghost: 48 ave 48 max 48 min 175s Histogram: 1 0 0 0 0 0 0 0 0 0 175s Neighs: 1124 ave 1124 max 1124 min 175s Histogram: 1 0 0 0 0 0 0 0 0 0 175s 175s Total # of neighbors = 1124 175s Ave neighs/atom = 2.6761905 175s Neighbor list builds = 561 175s Dangerous builds = 0 175s Total wall time: 0:00:00 175s run: OK 175s autopkgtest [08:45:57]: test flow: -----------------------] 175s flow PASS 175s autopkgtest [08:45:57]: test flow: - - - - - - - - - - results - - - - - - - - - - 176s autopkgtest [08:45:58]: test friction: preparing testbed 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Solving dependencies... 176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s autopkgtest [08:45:59]: test friction: [----------------------- 178s LAMMPS (4 Feb 2025) 178s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 178s using 1 OpenMP thread(s) per MPI task 178s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 178s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 178s 2 by 1 by 1 MPI processor grid 178s Created 750 atoms 178s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 178s create_atoms CPU = 0.000 seconds 178s Created 750 atoms 178s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 178s create_atoms CPU = 0.000 seconds 178s Created 112 atoms 178s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 178s create_atoms CPU = 0.000 seconds 178s Created 112 atoms 178s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 178s create_atoms CPU = 0.000 seconds 178s 750 atoms in group lo 178s 862 atoms in group lo 178s 750 atoms in group hi 178s 862 atoms in group hi 178s 150 atoms in group lo-fixed 178s 150 atoms in group hi-fixed 178s 300 atoms in group boundary 178s 1424 atoms in group mobile 178s Setting atom values ... 178s 150 settings made for type 178s Setting atom values ... 178s 150 settings made for type 178s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 178s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 178s Neighbor list info ... 178s update: every = 1 steps, delay = 5 steps, check = yes 178s max neighbors/atom: 2000, page size: 100000 178s master list distance cutoff = 2.8 178s ghost atom cutoff = 2.8 178s binsize = 1.4, bins = 41 31 1 178s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 178s (1) pair lj/cut, perpetual 178s attributes: half, newton on 178s pair build: half/bin/atomonly/newton 178s stencil: half/bin/2d 178s bin: standard 178s Setting up Verlet run ... 178s Unit style : lj 178s Current step : 0 178s Time step : 0.0025 178s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 178s Step Temp E_pair E_mol TotEng Press Volume 178s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 178s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 178s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 178s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 178s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 178s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 178s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 178s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 179s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 179s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 179s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 179s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 179s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 179s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 179s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 179s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 179s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 179s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 180s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 180s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 180s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 180s Loop time of 2.17938 on 2 procs for 20000 steps with 1724 atoms 180s 180s Performance: 1982215.481 tau/day, 9176.924 timesteps/s, 15.821 Matom-step/s 180s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 180s 180s MPI task timing breakdown: 180s Section | min time | avg time | max time |%varavg| %total 180s --------------------------------------------------------------- 180s Pair | 1.1565 | 1.2737 | 1.3909 | 10.4 | 58.44 180s Neigh | 0.10062 | 0.1138 | 0.12697 | 3.9 | 5.22 180s Comm | 0.25448 | 0.38879 | 0.5231 | 21.5 | 17.84 180s Output | 0.00050829 | 0.00093271 | 0.0013571 | 0.0 | 0.04 180s Modify | 0.29607 | 0.31906 | 0.34205 | 4.1 | 14.64 180s Other | | 0.08307 | | | 3.81 180s 180s Nlocal: 862 ave 868 max 856 min 180s Histogram: 1 0 0 0 0 0 0 0 0 1 180s Nghost: 160.5 ave 161 max 160 min 180s Histogram: 1 0 0 0 0 0 0 0 0 1 180s Neighs: 7178.5 ave 7223 max 7134 min 180s Histogram: 1 0 0 0 0 0 0 0 0 1 180s 180s Total # of neighbors = 14357 180s Ave neighs/atom = 8.3277262 180s Neighbor list builds = 716 180s Dangerous builds = 0 180s Total wall time: 0:00:02 180s LAMMPS (4 Feb 2025) 183s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 183s using 1 OpenMP thread(s) per MPI task 183s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 183s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 183s 1 by 1 by 1 MPI processor grid 183s Created 750 atoms 183s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 183s create_atoms CPU = 0.000 seconds 183s Created 750 atoms 183s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 183s create_atoms CPU = 0.000 seconds 183s Created 112 atoms 183s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 183s create_atoms CPU = 0.000 seconds 183s Created 112 atoms 183s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 183s create_atoms CPU = 0.000 seconds 183s 750 atoms in group lo 183s 862 atoms in group lo 183s 750 atoms in group hi 183s 862 atoms in group hi 183s 150 atoms in group lo-fixed 183s 150 atoms in group hi-fixed 183s 300 atoms in group boundary 183s 1424 atoms in group mobile 183s Setting atom values ... 183s 150 settings made for type 183s Setting atom values ... 183s 150 settings made for type 183s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 183s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 183s Neighbor list info ... 183s update: every = 1 steps, delay = 5 steps, check = yes 183s max neighbors/atom: 2000, page size: 100000 183s master list distance cutoff = 2.8 183s ghost atom cutoff = 2.8 183s binsize = 1.4, bins = 41 31 1 183s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 183s (1) pair lj/cut, perpetual 183s attributes: half, newton on 183s pair build: half/bin/atomonly/newton 183s stencil: half/bin/2d 183s bin: standard 183s Setting up Verlet run ... 183s Unit style : lj 183s Current step : 0 183s Time step : 0.0025 183s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 183s Step Temp E_pair E_mol TotEng Press Volume 183s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 183s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 183s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 183s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 183s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 183s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 183s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 183s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 183s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 183s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 183s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 183s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 183s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 183s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 183s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 183s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 183s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 183s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 183s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 183s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 183s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 183s Loop time of 3.32794 on 1 procs for 20000 steps with 1724 atoms 183s 183s Performance: 1298099.453 tau/day, 6009.720 timesteps/s, 10.361 Matom-step/s 183s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 183s 183s MPI task timing breakdown: 183s Section | min time | avg time | max time |%varavg| %total 183s --------------------------------------------------------------- 183s Pair | 2.4004 | 2.4004 | 2.4004 | 0.0 | 72.13 183s Neigh | 0.19571 | 0.19571 | 0.19571 | 0.0 | 5.88 183s Comm | 0.037975 | 0.037975 | 0.037975 | 0.0 | 1.14 183s Output | 0.0007508 | 0.0007508 | 0.0007508 | 0.0 | 0.02 183s Modify | 0.62461 | 0.62461 | 0.62461 | 0.0 | 18.77 183s Other | | 0.06853 | | | 2.06 183s 183s Nlocal: 1724 ave 1724 max 1724 min 183s Histogram: 1 0 0 0 0 0 0 0 0 0 183s Nghost: 144 ave 144 max 144 min 183s Histogram: 1 0 0 0 0 0 0 0 0 0 183s Neighs: 14364 ave 14364 max 14364 min 183s Histogram: 1 0 0 0 0 0 0 0 0 0 183s 183s Total # of neighbors = 14364 183s Ave neighs/atom = 8.3317865 183s Neighbor list builds = 714 183s Dangerous builds = 0 183s Total wall time: 0:00:03 183s run: OK 184s autopkgtest [08:46:06]: test friction: -----------------------] 184s autopkgtest [08:46:06]: test friction: - - - - - - - - - - results - - - - - - - - - - 184s friction PASS 185s autopkgtest [08:46:07]: test hugo: preparing testbed 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Solving dependencies... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s autopkgtest [08:46:08]: test hugo: [----------------------- 186s LAMMPS (4 Feb 2025) 186s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 186s using 1 OpenMP thread(s) per MPI task 186s Lattice spacing in x,y,z = 1.4142135 2 2 186s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 186s 1 by 1 by 2 MPI processor grid 186s Created 1000 atoms 186s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 186s create_atoms CPU = 0.000 seconds 186s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 186s Neighbor list info ... 186s update: every = 1 steps, delay = 0 steps, check = yes 186s max neighbors/atom: 2000, page size: 100000 186s master list distance cutoff = 1.8475372 186s ghost atom cutoff = 1.8475372 186s binsize = 0.92376862, bins = 8 11 11 186s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 186s (1) pair lj/cubic, perpetual 186s attributes: half, newton on 186s pair build: half/bin/atomonly/newton 186s stencil: half/bin/3d 186s bin: standard 186s Setting up cg style minimization ... 186s Unit style : lj 186s Current step : 0 186s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 186s (src/min.cpp:219) 186s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 186s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 186s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 186s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 186s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 186s Loop time of 0.0284906 on 2 procs for 134 steps with 1000 atoms 186s 186s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 186s 186s Minimization stats: 186s Stopping criterion = force tolerance 186s Energy initial, next-to-last, final = 186s -6.29375358358574 -6.33442531515467 -6.33442531515467 186s Force two-norm initial, final = 3395.2895 5.5900884e-10 186s Force max component initial, final = 1960.2713 3.2516979e-10 186s Final line search alpha, max atom move = 1 3.2516979e-10 186s Iterations, force evaluations = 134 137 186s 186s MPI task timing breakdown: 186s Section | min time | avg time | max time |%varavg| %total 186s --------------------------------------------------------------- 186s Pair | 0.015177 | 0.015974 | 0.016772 | 0.6 | 56.07 186s Neigh | 0.00043687 | 0.00049424 | 0.00055161 | 0.0 | 1.73 186s Comm | 0.0057241 | 0.0062909 | 0.0068578 | 0.7 | 22.08 186s Output | 1.9437e-05 | 3.8884e-05 | 5.8331e-05 | 0.0 | 0.14 186s Modify | 0 | 0 | 0 | 0.0 | 0.00 186s Other | | 0.005692 | | | 19.98 186s 186s Nlocal: 500 ave 550 max 450 min 186s Histogram: 1 0 0 0 0 0 0 0 0 1 186s Nghost: 1214 ave 1264 max 1164 min 186s Histogram: 1 0 0 0 0 0 0 0 0 1 186s Neighs: 10500 ave 11550 max 9450 min 186s Histogram: 1 0 0 0 0 0 0 0 0 1 186s 186s Total # of neighbors = 21000 186s Ave neighs/atom = 21 186s Neighbor list builds = 1 186s Dangerous builds = 0 186s System init for write_restart ... 186s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 186s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 186s using 1 OpenMP thread(s) per MPI task 186s Reading restart file ... 186s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 186s restoring atom style atomic from restart 186s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 186s 1 by 1 by 2 MPI processor grid 186s restoring pair style lj/cubic from restart 186s 1000 atoms 186s read_restart CPU = 0.001 seconds 186s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 186s Neighbor list info ... 186s update: every = 1 steps, delay = 0 steps, check = yes 187s max neighbors/atom: 2000, page size: 100000 187s master list distance cutoff = 1.7475372 187s ghost atom cutoff = 1.7475372 187s binsize = 0.87376862, bins = 8 12 12 187s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 187s (1) pair lj/cubic, perpetual 187s attributes: half, newton on 187s pair build: half/bin/atomonly/newton 187s stencil: half/bin/3d 187s bin: standard 187s Setting up Verlet run ... 187s Unit style : lj 187s Current step : 0 187s Time step : 0.001 187s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 187s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 187s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 187s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 187s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 187s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 188s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 188s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 188s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 188s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 189s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 189s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 189s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 189s Loop time of 2.62962 on 2 procs for 10000 steps with 1000 atoms 189s 189s Performance: 328564.312 tau/day, 3802.828 timesteps/s, 3.803 Matom-step/s 189s 94.1% CPU use with 2 MPI tasks x 1 OpenMP threads 189s 189s MPI task timing breakdown: 189s Section | min time | avg time | max time |%varavg| %total 189s --------------------------------------------------------------- 189s Pair | 1.5115 | 1.5311 | 1.5506 | 1.6 | 58.22 189s Neigh | 0.088825 | 0.090304 | 0.091783 | 0.5 | 3.43 189s Comm | 0.52804 | 0.54449 | 0.56093 | 2.2 | 20.71 189s Output | 0.00049424 | 0.0010761 | 0.0016579 | 1.8 | 0.04 189s Modify | 0.37711 | 0.37907 | 0.38102 | 0.3 | 14.42 189s Other | | 0.08363 | | | 3.18 189s 189s Nlocal: 500 ave 510 max 490 min 189s Histogram: 1 0 0 0 0 0 0 0 0 1 189s Nghost: 1351.5 ave 1357 max 1346 min 189s Histogram: 1 0 0 0 0 0 0 0 0 1 189s Neighs: 10160.5 ave 10780 max 9541 min 189s Histogram: 1 0 0 0 0 0 0 0 0 1 189s 189s Total # of neighbors = 20321 189s Ave neighs/atom = 20.321 189s Neighbor list builds = 194 189s Dangerous builds = 0 189s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 189s using 1 OpenMP thread(s) per MPI task 189s Reading restart file ... 189s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 189s restoring atom style atomic from restart 189s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 189s 1 by 1 by 2 MPI processor grid 189s restoring pair style lj/cubic from restart 189s 1000 atoms 189s read_restart CPU = 0.001 seconds 189s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 189s Neighbor list info ... 189s update: every = 1 steps, delay = 0 steps, check = yes 189s max neighbors/atom: 2000, page size: 100000 189s master list distance cutoff = 1.7475372 189s ghost atom cutoff = 1.7475372 189s binsize = 0.87376862, bins = 8 12 12 189s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 189s (1) pair lj/cubic, perpetual 189s attributes: half, newton on 189s pair build: half/bin/atomonly/newton 189s stencil: half/bin/3d 189s bin: standard 189s Setting up Verlet run ... 189s Unit style : lj 189s Current step : 0 189s Time step : 0.001 189s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 189s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 189s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 189s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 190s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 190s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 190s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 190s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 190s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 191s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 191s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 191s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 191s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 191s Loop time of 2.17021 on 2 procs for 10000 steps with 1000 atoms 191s 191s Performance: 398118.747 tau/day, 4607.856 timesteps/s, 4.608 Matom-step/s 191s 93.9% CPU use with 2 MPI tasks x 1 OpenMP threads 191s 191s MPI task timing breakdown: 191s Section | min time | avg time | max time |%varavg| %total 191s --------------------------------------------------------------- 191s Pair | 1.1777 | 1.2229 | 1.2681 | 4.1 | 56.35 191s Neigh | 0.0050147 | 0.0051188 | 0.0052229 | 0.1 | 0.24 191s Comm | 0.43295 | 0.48137 | 0.52979 | 7.0 | 22.18 191s Output | 0.00045882 | 0.0012989 | 0.0021389 | 2.3 | 0.06 191s Modify | 0.38171 | 0.38205 | 0.38239 | 0.1 | 17.60 191s Other | | 0.07746 | | | 3.57 191s 191s Nlocal: 500 ave 503 max 497 min 191s Histogram: 1 0 0 0 0 0 0 0 0 1 191s Nghost: 1214 ave 1217 max 1211 min 191s Histogram: 1 0 0 0 0 0 0 0 0 1 191s Neighs: 10500 ave 10560 max 10440 min 191s Histogram: 1 0 0 0 0 0 0 0 0 1 191s 191s Total # of neighbors = 21000 191s Ave neighs/atom = 21 191s Neighbor list builds = 10 191s Dangerous builds = 0 191s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 191s using 1 OpenMP thread(s) per MPI task 191s Reading restart file ... 191s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 191s restoring atom style atomic from restart 191s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 191s 1 by 1 by 2 MPI processor grid 191s restoring pair style lj/cubic from restart 191s 1000 atoms 191s read_restart CPU = 0.001 seconds 191s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 191s Neighbor list info ... 191s update: every = 1 steps, delay = 0 steps, check = yes 191s max neighbors/atom: 2000, page size: 100000 191s master list distance cutoff = 1.7475372 191s ghost atom cutoff = 1.7475372 191s binsize = 0.87376862, bins = 8 12 12 191s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 191s (1) pair lj/cubic, perpetual 191s attributes: half, newton on 191s pair build: half/bin/atomonly/newton 191s stencil: half/bin/3d 191s bin: standard 191s Setting up Verlet run ... 191s Unit style : lj 191s Current step : 0 191s Time step : 0.001 191s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 191s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 191s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 192s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 192s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 192s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 192s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 192s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 193s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 193s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 193s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 193s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 193s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 193s Loop time of 2.09593 on 2 procs for 10000 steps with 1000 atoms 193s 193s Performance: 412227.675 tau/day, 4771.154 timesteps/s, 4.771 Matom-step/s 193s 93.7% CPU use with 2 MPI tasks x 1 OpenMP threads 193s 193s MPI task timing breakdown: 193s Section | min time | avg time | max time |%varavg| %total 193s --------------------------------------------------------------- 193s Pair | 1.2091 | 1.219 | 1.2288 | 0.9 | 58.16 193s Neigh | 0.041115 | 0.041457 | 0.0418 | 0.2 | 1.98 193s Comm | 0.39015 | 0.40251 | 0.41486 | 1.9 | 19.20 193s Output | 0.00044603 | 0.0013054 | 0.0021648 | 2.4 | 0.06 193s Modify | 0.35931 | 0.35969 | 0.36008 | 0.1 | 17.16 193s Other | | 0.072 | | | 3.44 193s 193s Nlocal: 500 ave 503 max 497 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s Nghost: 1217.5 ave 1219 max 1216 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s Neighs: 10291 ave 10353 max 10229 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s 193s Total # of neighbors = 20582 193s Ave neighs/atom = 20.582 193s Neighbor list builds = 89 193s Dangerous builds = 0 193s Total wall time: 0:00:06 194s LAMMPS (4 Feb 2025) 194s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 194s using 1 OpenMP thread(s) per MPI task 194s Lattice spacing in x,y,z = 1.4142135 2 2 194s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 194s 1 by 1 by 1 MPI processor grid 194s Created 1000 atoms 194s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 194s create_atoms CPU = 0.000 seconds 194s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 194s Neighbor list info ... 194s update: every = 1 steps, delay = 0 steps, check = yes 194s max neighbors/atom: 2000, page size: 100000 194s master list distance cutoff = 1.8475372 194s ghost atom cutoff = 1.8475372 194s binsize = 0.92376862, bins = 8 11 11 194s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 194s (1) pair lj/cubic, perpetual 194s attributes: half, newton on 194s pair build: half/bin/atomonly/newton 194s stencil: half/bin/3d 194s bin: standard 194s Setting up cg style minimization ... 194s Unit style : lj 194s Current step : 0 194s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 194s (src/min.cpp:219) 194s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 194s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 194s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 194s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 194s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 194s Loop time of 0.0406355 on 1 procs for 134 steps with 1000 atoms 194s 194s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 194s 194s Minimization stats: 194s Stopping criterion = force tolerance 194s Energy initial, next-to-last, final = 194s -6.29375358358557 -6.33442531515503 -6.33442531515503 194s Force two-norm initial, final = 3395.2895 5.5740327e-10 194s Force max component initial, final = 1960.2713 3.2730334e-10 194s Final line search alpha, max atom move = 1 3.2730334e-10 194s Iterations, force evaluations = 134 137 194s 194s MPI task timing breakdown: 194s Section | min time | avg time | max time |%varavg| %total 194s --------------------------------------------------------------- 194s Pair | 0.031766 | 0.031766 | 0.031766 | 0.0 | 78.17 194s Neigh | 0.00071803 | 0.00071803 | 0.00071803 | 0.0 | 1.77 194s Comm | 0.0018109 | 0.0018109 | 0.0018109 | 0.0 | 4.46 194s Output | 2.2292e-05 | 2.2292e-05 | 2.2292e-05 | 0.0 | 0.05 194s Modify | 0 | 0 | 0 | 0.0 | 0.00 194s Other | | 0.006318 | | | 15.55 194s 194s Nlocal: 1000 ave 1000 max 1000 min 194s Histogram: 1 0 0 0 0 0 0 0 0 0 194s Nghost: 1724 ave 1724 max 1724 min 194s Histogram: 1 0 0 0 0 0 0 0 0 0 194s Neighs: 21000 ave 21000 max 21000 min 194s Histogram: 1 0 0 0 0 0 0 0 0 0 194s 194s Total # of neighbors = 21000 194s Ave neighs/atom = 21 194s Neighbor list builds = 1 194s Dangerous builds = 0 194s System init for write_restart ... 194s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 194s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 194s using 1 OpenMP thread(s) per MPI task 194s Reading restart file ... 194s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 194s restoring atom style atomic from restart 194s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 194s 1 by 1 by 1 MPI processor grid 194s restoring pair style lj/cubic from restart 194s 1000 atoms 194s read_restart CPU = 0.000 seconds 194s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 194s Neighbor list info ... 194s update: every = 1 steps, delay = 0 steps, check = yes 194s max neighbors/atom: 2000, page size: 100000 194s master list distance cutoff = 1.7475372 194s ghost atom cutoff = 1.7475372 194s binsize = 0.87376862, bins = 8 12 12 194s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 198s (1) pair lj/cubic, perpetual 198s attributes: half, newton on 198s pair build: half/bin/atomonly/newton 198s stencil: half/bin/3d 198s bin: standard 198s Setting up Verlet run ... 198s Unit style : lj 198s Current step : 0 198s Time step : 0.001 198s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 198s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 198s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 198s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 198s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 198s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 198s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 198s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 198s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 198s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 198s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 198s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 198s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 198s Loop time of 4.38638 on 1 procs for 10000 steps with 1000 atoms 198s 198s Performance: 196973.514 tau/day, 2279.786 timesteps/s, 2.280 Matom-step/s 198s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 198s 198s MPI task timing breakdown: 198s Section | min time | avg time | max time |%varavg| %total 198s --------------------------------------------------------------- 198s Pair | 3.5031 | 3.5031 | 3.5031 | 0.0 | 79.86 198s Neigh | 0.16816 | 0.16816 | 0.16816 | 0.0 | 3.83 198s Comm | 0.14814 | 0.14814 | 0.14814 | 0.0 | 3.38 198s Output | 0.00041551 | 0.00041551 | 0.00041551 | 0.0 | 0.01 198s Modify | 0.53785 | 0.53785 | 0.53785 | 0.0 | 12.26 198s Other | | 0.02873 | | | 0.66 198s 198s Nlocal: 1000 ave 1000 max 1000 min 198s Histogram: 1 0 0 0 0 0 0 0 0 0 198s Nghost: 1886 ave 1886 max 1886 min 198s Histogram: 1 0 0 0 0 0 0 0 0 0 198s Neighs: 20874 ave 20874 max 20874 min 198s Histogram: 1 0 0 0 0 0 0 0 0 0 198s 198s Total # of neighbors = 20874 198s Ave neighs/atom = 20.874 198s Neighbor list builds = 188 198s Dangerous builds = 0 198s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 198s using 1 OpenMP thread(s) per MPI task 198s Reading restart file ... 198s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 198s restoring atom style atomic from restart 198s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 198s 1 by 1 by 1 MPI processor grid 198s restoring pair style lj/cubic from restart 198s 1000 atoms 198s read_restart CPU = 0.000 seconds 198s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 198s Neighbor list info ... 202s update: every = 1 steps, delay = 0 steps, check = yes 202s max neighbors/atom: 2000, page size: 100000 202s master list distance cutoff = 1.7475372 202s ghost atom cutoff = 1.7475372 202s binsize = 0.87376862, bins = 8 12 12 202s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 202s (1) pair lj/cubic, perpetual 202s attributes: half, newton on 202s pair build: half/bin/atomonly/newton 202s stencil: half/bin/3d 202s bin: standard 202s Setting up Verlet run ... 202s Unit style : lj 202s Current step : 0 202s Time step : 0.001 202s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 202s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 202s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 202s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 202s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 202s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 202s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 202s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 202s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 202s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 202s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 202s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 202s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 202s Loop time of 3.87196 on 1 procs for 10000 steps with 1000 atoms 202s 202s Performance: 223143.024 tau/day, 2582.674 timesteps/s, 2.583 Matom-step/s 202s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 202s 202s MPI task timing breakdown: 202s Section | min time | avg time | max time |%varavg| %total 202s --------------------------------------------------------------- 202s Pair | 3.16 | 3.16 | 3.16 | 0.0 | 81.61 202s Neigh | 0.0095782 | 0.0095782 | 0.0095782 | 0.0 | 0.25 202s Comm | 0.13349 | 0.13349 | 0.13349 | 0.0 | 3.45 202s Output | 0.00046979 | 0.00046979 | 0.00046979 | 0.0 | 0.01 202s Modify | 0.53995 | 0.53995 | 0.53995 | 0.0 | 13.95 202s Other | | 0.02847 | | | 0.74 202s 202s Nlocal: 1000 ave 1000 max 1000 min 202s Histogram: 1 0 0 0 0 0 0 0 0 0 202s Nghost: 1724 ave 1724 max 1724 min 202s Histogram: 1 0 0 0 0 0 0 0 0 0 202s Neighs: 21000 ave 21000 max 21000 min 202s Histogram: 1 0 0 0 0 0 0 0 0 0 202s 202s Total # of neighbors = 21000 202s Ave neighs/atom = 21 202s Neighbor list builds = 11 202s Dangerous builds = 0 202s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 202s using 1 OpenMP thread(s) per MPI task 202s Reading restart file ... 202s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 202s restoring atom style atomic from restart 206s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 206s 1 by 1 by 1 MPI processor grid 206s restoring pair style lj/cubic from restart 206s 1000 atoms 206s read_restart CPU = 0.000 seconds 206s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 206s Neighbor list info ... 206s update: every = 1 steps, delay = 0 steps, check = yes 206s max neighbors/atom: 2000, page size: 100000 206s master list distance cutoff = 1.7475372 206s ghost atom cutoff = 1.7475372 206s binsize = 0.87376862, bins = 8 12 12 206s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 206s (1) pair lj/cubic, perpetual 206s attributes: half, newton on 206s pair build: half/bin/atomonly/newton 206s stencil: half/bin/3d 206s bin: standard 206s Setting up Verlet run ... 206s Unit style : lj 206s Current step : 0 206s Time step : 0.001 206s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 206s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 206s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 206s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 206s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 206s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 206s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 206s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 206s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 206s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 206s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 206s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 206s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 206s Loop time of 4.10432 on 1 procs for 10000 steps with 1000 atoms 206s 206s Performance: 210509.695 tau/day, 2436.455 timesteps/s, 2.436 Matom-step/s 206s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 206s 206s MPI task timing breakdown: 206s Section | min time | avg time | max time |%varavg| %total 206s --------------------------------------------------------------- 206s Pair | 3.2939 | 3.2939 | 3.2939 | 0.0 | 80.25 206s Neigh | 0.089157 | 0.089157 | 0.089157 | 0.0 | 2.17 206s Comm | 0.13786 | 0.13786 | 0.13786 | 0.0 | 3.36 206s Output | 0.00044431 | 0.00044431 | 0.00044431 | 0.0 | 0.01 206s Modify | 0.55229 | 0.55229 | 0.55229 | 0.0 | 13.46 206s Other | | 0.03071 | | | 0.75 206s 206s Nlocal: 1000 ave 1000 max 1000 min 206s Histogram: 1 0 0 0 0 0 0 0 0 0 206s Nghost: 1724 ave 1724 max 1724 min 206s Histogram: 1 0 0 0 0 0 0 0 0 0 206s Neighs: 20654 ave 20654 max 20654 min 206s Histogram: 1 0 0 0 0 0 0 0 0 0 206s 206s Total # of neighbors = 20654 206s Ave neighs/atom = 20.654 206s Neighbor list builds = 94 206s Dangerous builds = 0 206s Total wall time: 0:00:12 206s run: OK 206s autopkgtest [08:46:28]: test hugo: -----------------------] 207s hugo PASS 207s autopkgtest [08:46:29]: test hugo: - - - - - - - - - - results - - - - - - - - - - 207s autopkgtest [08:46:29]: test command1: preparing testbed 229s Creating nova instance adt-resolute-amd64-lammps-20251021-084302-juju-7f2275-prod-proposed-migration-environment-2-f49b400e-a29e-4b2f-a201-a41cc0a4d73a from image adt/ubuntu-resolute-amd64-server-20251020.img (UUID 7055ba1b-c1c6-41b9-86b4-9208df8eb198)... 291s autopkgtest [08:47:53]: testbed dpkg architecture: amd64 291s autopkgtest [08:47:53]: testbed apt version: 3.1.8ubuntu1 292s autopkgtest [08:47:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 292s autopkgtest [08:47:54]: testbed release detected to be: resolute 293s autopkgtest [08:47:55]: updating testbed package index (apt update) 293s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 293s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 294s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 294s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 294s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.1 kB] 294s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [560 kB] 294s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 294s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 294s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [75.4 kB] 294s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [124 kB] 294s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 294s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 294s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [379 kB] 294s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [130 kB] 294s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 294s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 294s Fetched 1472 kB in 1s (1301 kB/s) 295s Reading package lists... 296s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 296s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 296s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 296s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 297s Reading package lists... 297s Reading package lists... 297s Building dependency tree... 297s Reading state information... 297s Calculating upgrade... 297s The following packages will be upgraded: 297s libbrotli1 libjson-c5 libpython3.13 libpython3.13-minimal 297s libpython3.13-stdlib libxml2-16 python3-bcrypt python3-dbus python3-inflect 297s python3-markupsafe python3-oauthlib python3-zipp python3.13 python3.13-gdbm 297s python3.13-minimal 297s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 297s Need to get 10.0 MB of archives. 297s After this operation, 181 kB disk space will be freed. 297s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13 amd64 3.13.9-1 [753 kB] 298s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-minimal amd64 3.13.9-1 [2408 kB] 299s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13 amd64 3.13.9-1 [2367 kB] 299s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [2078 kB] 300s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-minimal amd64 3.13.9-1 [887 kB] 300s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libjson-c5 amd64 0.18+ds-1.1 [37.7 kB] 300s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2build1 [616 kB] 300s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dbus amd64 1.4.0-1build1 [118 kB] 300s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-gdbm amd64 3.13.9-1 [32.6 kB] 300s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.1.0-2build6 [334 kB] 300s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-inflect all 7.5.0-1 [33.9 kB] 300s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markupsafe amd64 2.1.5-1build5 [13.8 kB] 300s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-oauthlib all 3.3.1-1 [93.5 kB] 300s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-zipp all 3.23.0-1 [10.4 kB] 300s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-bcrypt amd64 4.3.0-2 [253 kB] 301s dpkg-preconfigure: unable to re-open stdin: No such file or directory 301s Fetched 10.0 MB in 3s (2934 kB/s) 301s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78444 files and directories currently installed.) 301s Preparing to unpack .../00-python3.13_3.13.9-1_amd64.deb ... 301s Unpacking python3.13 (3.13.9-1) over (3.13.7-1) ... 302s Preparing to unpack .../01-python3.13-minimal_3.13.9-1_amd64.deb ... 302s Unpacking python3.13-minimal (3.13.9-1) over (3.13.7-1) ... 302s Preparing to unpack .../02-libpython3.13_3.13.9-1_amd64.deb ... 302s Unpacking libpython3.13:amd64 (3.13.9-1) over (3.13.7-1) ... 302s Preparing to unpack .../03-libpython3.13-stdlib_3.13.9-1_amd64.deb ... 302s Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) over (3.13.7-1) ... 302s Preparing to unpack .../04-libpython3.13-minimal_3.13.9-1_amd64.deb ... 302s Unpacking libpython3.13-minimal:amd64 (3.13.9-1) over (3.13.7-1) ... 302s Preparing to unpack .../05-libjson-c5_0.18+ds-1.1_amd64.deb ... 302s Unpacking libjson-c5:amd64 (0.18+ds-1.1) over (0.18+ds-1) ... 302s Preparing to unpack .../06-libxml2-16_2.14.5+dfsg-0.2build1_amd64.deb ... 302s Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2build1) over (2.14.5+dfsg-0.2) ... 302s Preparing to unpack .../07-python3-dbus_1.4.0-1build1_amd64.deb ... 303s Unpacking python3-dbus (1.4.0-1build1) over (1.4.0-1) ... 303s Preparing to unpack .../08-python3.13-gdbm_3.13.9-1_amd64.deb ... 303s Unpacking python3.13-gdbm (3.13.9-1) over (3.13.7-1) ... 303s Preparing to unpack .../09-libbrotli1_1.1.0-2build6_amd64.deb ... 303s Unpacking libbrotli1:amd64 (1.1.0-2build6) over (1.1.0-2build5) ... 303s Preparing to unpack .../10-python3-inflect_7.5.0-1_all.deb ... 303s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 303s Preparing to unpack .../11-python3-markupsafe_2.1.5-1build5_amd64.deb ... 303s Unpacking python3-markupsafe (2.1.5-1build5) over (2.1.5-1build4) ... 303s Preparing to unpack .../12-python3-oauthlib_3.3.1-1_all.deb ... 303s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 303s Preparing to unpack .../13-python3-zipp_3.23.0-1_all.deb ... 303s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 303s Preparing to unpack .../14-python3-bcrypt_4.3.0-2_amd64.deb ... 303s Unpacking python3-bcrypt (4.3.0-2) over (4.2.0-2.1build1) ... 303s Setting up python3-dbus (1.4.0-1build1) ... 304s Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2build1) ... 304s Setting up python3-bcrypt (4.3.0-2) ... 304s Setting up libbrotli1:amd64 (1.1.0-2build6) ... 304s Setting up python3-zipp (3.23.0-1) ... 304s Setting up python3-markupsafe (2.1.5-1build5) ... 304s Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... 304s Setting up python3-inflect (7.5.0-1) ... 304s Setting up python3-oauthlib (3.3.1-1) ... 304s Setting up python3.13-minimal (3.13.9-1) ... 305s Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... 305s Setting up libjson-c5:amd64 (0.18+ds-1.1) ... 305s Setting up python3.13-gdbm (3.13.9-1) ... 305s Setting up libpython3.13:amd64 (3.13.9-1) ... 305s Setting up python3.13 (3.13.9-1) ... 306s Processing triggers for systemd (257.9-0ubuntu2) ... 306s Processing triggers for man-db (2.13.1-1) ... 307s Processing triggers for libc-bin (2.42-0ubuntu3) ... 307s autopkgtest [08:48:09]: upgrading testbed (apt dist-upgrade and autopurge) 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Calculating upgrade... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 308s Solving dependencies... 308s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 311s Reading package lists... 311s Building dependency tree... 311s Reading state information... 311s Solving dependencies... 312s The following NEW packages will be installed: 312s autoconf automake autotools-dev cpp-15 cpp-15-x86-64-linux-gnu 312s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15 312s gcc-15-x86-64-linux-gnu gfortran-15 gfortran-15-x86-64-linux-gnu libaec0 312s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 312s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libevent-2.1-7t64 312s libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 312s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 312s libfftw3-double3 libfontconfig1 libgbm1 libgcc-15-dev libgfortran-15-dev 312s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 312s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 312s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 312s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 312s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 312s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 312s libmpc3 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 312s libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 312s libpnetcdf6 libproj25 libpsm2-2 libquadmath0 librdmacm1t64 libsharpyuv0 312s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 312s libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 312s libvtk9.3 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 312s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 312s libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 312s libxxf86vm1 libze1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 312s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 312s x11-common zlib1g-dev 312s 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. 312s Need to get 201 MB of archives. 312s After this operation, 795 MB of additional disk space will be used. 312s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 m4 amd64 1.4.19-8 [248 kB] 312s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 autoconf all 2.72-3.1ubuntu1 [384 kB] 312s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 autotools-dev all 20240727.1 [43.4 kB] 312s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 automake all 1:1.17-4ubuntu1 [572 kB] 312s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1 [685 kB] 313s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-1build3 [57.0 kB] 313s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [12.9 MB] 314s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-5ubuntu1 [1028 B] 314s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 314s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 314s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 314s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-5ubuntu1 [47.4 kB] 314s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 314s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-5ubuntu1 [29.3 kB] 314s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-5ubuntu1 [3071 kB] 314s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-5ubuntu1 [1360 kB] 314s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-5ubuntu1 [2757 kB] 315s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-5ubuntu1 [1210 kB] 315s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-5ubuntu1 [1685 kB] 315s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-5ubuntu1 [153 kB] 315s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-5ubuntu1 [2863 kB] 315s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [25.4 MB] 316s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-5ubuntu1 [523 kB] 316s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 316s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-5ubuntu1 [972 kB] 316s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [13.6 MB] 316s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-5ubuntu1 [17.7 kB] 316s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 316s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libllvm17t64 amd64 1:17.0.6-22build1 [25.9 MB] 317s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build3 [14.3 MB] 318s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.125-1 [21.6 kB] 318s Get:32 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsakmt1 amd64 6.2.4+ds-1 [66.8 kB] 318s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsa-runtime64-1 amd64 6.1.2-3 [564 kB] 318s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamdhip64-5 amd64 5.7.1-6 [9698 kB] 318s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 318s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 318s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 318s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 318s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 318s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 318s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 319s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 319s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.3.1-1build1 [42.8 kB] 319s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB] 319s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.125-1 [64.9 kB] 319s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10build1 [155 kB] 319s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build1 [98.8 kB] 319s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10build1 [68.1 kB] 319s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10build1 [8360 B] 319s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10build1 [16.7 kB] 319s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-dev amd64 2.1.12-stable-10build1 [288 kB] 319s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 319s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 librdmacm1t64 amd64 56.1-1ubuntu1 [71.4 kB] 319s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfabric1 amd64 2.1.0-1.1 [697 kB] 319s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build2 [860 kB] 319s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 319s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2build1 [8036 B] 319s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2build1 [6446 B] 319s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2build1 [19.7 kB] 319s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2build1 [10.1 kB] 319s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2build1 [11.1 kB] 319s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 319s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.2.3-1ubuntu1 [11.1 MB] 319s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.2.3-1ubuntu1 [34.0 kB] 319s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.321.0-1 [154 kB] 319s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.2.3-1ubuntu1 [36.9 kB] 319s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-1build2 [65.1 kB] 319s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2build1 [27.6 kB] 319s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 319s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.2.3-1ubuntu1 [110 kB] 319s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-1build2 [40.3 kB] 319s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-1build2 [101 kB] 319s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 319s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 319s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 319s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 320s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 320s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc15 amd64 2.12.2-1 [181 kB] 320s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 320s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 320s Get:81 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 320s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 320s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 320s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 320s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 320s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 320s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libibumad3 amd64 56.1-1ubuntu1 [31.3 kB] 320s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libibmad5 amd64 56.1-1ubuntu1 [44.0 kB] 320s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libucx0 amd64 1.19.0+ds-1 [1308 kB] 320s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 320s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libze1 amd64 1.24.1-2 [599 kB] 320s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 320s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-plugins amd64 2.12.2-1 [22.2 kB] 320s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi40 amd64 5.0.8-8ubuntu1 [3384 kB] 320s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 320s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 320s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 320s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-1build2 [32.6 kB] 320s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.6.0-1 [7955 kB] 321s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 321s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 321s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 321s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 322s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 322s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.6.0-1 [1475 kB] 322s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.7 kB] 322s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbmalloc2 amd64 2022.1.0-1 [53.7 kB] 322s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbb12 amd64 2022.1.0-1 [93.5 kB] 322s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 322s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 322s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 322s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 322s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 322s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 322s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 322s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu2 [25.3 MB] 324s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblammps0t64 amd64 20250204+dfsg.1-2 [7956 kB] 324s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 324s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libnl-3-dev amd64 3.7.0-2build1 [105 kB] 324s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libnl-route-3-dev amd64 3.7.0-2build1 [234 kB] 324s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libibverbs-dev amd64 56.1-1ubuntu1 [686 kB] 324s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libnuma-dev amd64 2.0.19-1 [37.3 kB] 324s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-4build1 [44.4 kB] 324s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl-dev amd64 2.5.4-4build1 [174 kB] 324s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-dev amd64 2.12.2-1 [283 kB] 324s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 324s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-bin amd64 5.0.8-8ubuntu1 [201 kB] 324s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi-dev amd64 5.0.8-8ubuntu1 [1226 kB] 324s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 mpi-default-dev amd64 1.18 [3320 B] 324s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblammps-dev amd64 20250204+dfsg.1-2 [114 kB] 324s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 324s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lammps amd64 20250204+dfsg.1-2 [75.4 kB] 325s Fetched 201 MB in 13s (16.0 MB/s) 325s Selecting previously unselected package m4. 325s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78458 files and directories currently installed.) 325s Preparing to unpack .../000-m4_1.4.19-8_amd64.deb ... 325s Unpacking m4 (1.4.19-8) ... 325s Selecting previously unselected package autoconf. 325s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ... 325s Unpacking autoconf (2.72-3.1ubuntu1) ... 325s Selecting previously unselected package autotools-dev. 325s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ... 325s Unpacking autotools-dev (20240727.1) ... 325s Selecting previously unselected package automake. 325s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ... 325s Unpacking automake (1:1.17-4ubuntu1) ... 325s Selecting previously unselected package libisl23:amd64. 325s Preparing to unpack .../004-libisl23_0.27-1_amd64.deb ... 325s Unpacking libisl23:amd64 (0.27-1) ... 325s Selecting previously unselected package libmpc3:amd64. 325s Preparing to unpack .../005-libmpc3_1.3.1-1build3_amd64.deb ... 325s Unpacking libmpc3:amd64 (1.3.1-1build3) ... 325s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 325s Preparing to unpack .../006-cpp-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package cpp-15. 325s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package fonts-dejavu-mono. 325s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 325s Unpacking fonts-dejavu-mono (2.37-8) ... 325s Selecting previously unselected package fonts-dejavu-core. 325s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 325s Unpacking fonts-dejavu-core (2.37-8) ... 325s Selecting previously unselected package fontconfig-config. 325s Preparing to unpack .../010-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 325s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 325s Selecting previously unselected package libcc1-0:amd64. 325s Preparing to unpack .../011-libcc1-0_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libcc1-0:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libgomp1:amd64. 325s Preparing to unpack .../012-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libitm1:amd64. 325s Preparing to unpack .../013-libitm1_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libitm1:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libasan8:amd64. 325s Preparing to unpack .../014-libasan8_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libasan8:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package liblsan0:amd64. 325s Preparing to unpack .../015-liblsan0_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking liblsan0:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libtsan2:amd64. 325s Preparing to unpack .../016-libtsan2_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libtsan2:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libubsan1:amd64. 325s Preparing to unpack .../017-libubsan1_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libubsan1:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libhwasan0:amd64. 325s Preparing to unpack .../018-libhwasan0_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libhwasan0:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libquadmath0:amd64. 325s Preparing to unpack .../019-libquadmath0_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libquadmath0:amd64 (15.2.0-5ubuntu1) ... 325s Selecting previously unselected package libgcc-15-dev:amd64. 325s Preparing to unpack .../020-libgcc-15-dev_15.2.0-5ubuntu1_amd64.deb ... 325s Unpacking libgcc-15-dev:amd64 (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 326s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 326s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package gcc-15. 326s Preparing to unpack .../022-gcc-15_15.2.0-5ubuntu1_amd64.deb ... 326s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package libgfortran5:amd64. 326s Preparing to unpack .../023-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 326s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package libgfortran-15-dev:amd64. 326s Preparing to unpack .../024-libgfortran-15-dev_15.2.0-5ubuntu1_amd64.deb ... 326s Unpacking libgfortran-15-dev:amd64 (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 326s Preparing to unpack .../025-gfortran-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 326s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package gfortran-15. 326s Preparing to unpack .../026-gfortran-15_15.2.0-5ubuntu1_amd64.deb ... 326s Unpacking gfortran-15 (15.2.0-5ubuntu1) ... 326s Selecting previously unselected package libaec0:amd64. 326s Preparing to unpack .../027-libaec0_1.1.3-1_amd64.deb ... 326s Unpacking libaec0:amd64 (1.1.3-1) ... 326s Selecting previously unselected package libllvm17t64:amd64. 326s Preparing to unpack .../028-libllvm17t64_1%3a17.0.6-22build1_amd64.deb ... 326s Unpacking libllvm17t64:amd64 (1:17.0.6-22build1) ... 327s Selecting previously unselected package libamd-comgr2:amd64. 327s Preparing to unpack .../029-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_amd64.deb ... 327s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build3) ... 327s Selecting previously unselected package libdrm-amdgpu1:amd64. 327s Preparing to unpack .../030-libdrm-amdgpu1_2.4.125-1_amd64.deb ... 327s Unpacking libdrm-amdgpu1:amd64 (2.4.125-1) ... 327s Selecting previously unselected package libhsakmt1:amd64. 327s Preparing to unpack .../031-libhsakmt1_6.2.4+ds-1_amd64.deb ... 327s Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... 327s Selecting previously unselected package libhsa-runtime64-1:amd64. 327s Preparing to unpack .../032-libhsa-runtime64-1_6.1.2-3_amd64.deb ... 327s Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... 327s Selecting previously unselected package libamdhip64-5:amd64. 327s Preparing to unpack .../033-libamdhip64-5_5.7.1-6_amd64.deb ... 327s Unpacking libamdhip64-5:amd64 (5.7.1-6) ... 327s Selecting previously unselected package libblas3:amd64. 327s Preparing to unpack .../034-libblas3_3.12.1-6build1_amd64.deb ... 327s Unpacking libblas3:amd64 (3.12.1-6build1) ... 327s Selecting previously unselected package libfontconfig1:amd64. 327s Preparing to unpack .../035-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 327s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 327s Selecting previously unselected package libpixman-1-0:amd64. 327s Preparing to unpack .../036-libpixman-1-0_0.44.0-3_amd64.deb ... 327s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 327s Selecting previously unselected package libxcb-render0:amd64. 327s Preparing to unpack .../037-libxcb-render0_1.17.0-2build1_amd64.deb ... 327s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 327s Selecting previously unselected package libxcb-shm0:amd64. 327s Preparing to unpack .../038-libxcb-shm0_1.17.0-2build1_amd64.deb ... 327s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 327s Selecting previously unselected package libxrender1:amd64. 327s 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libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 327s Selecting previously unselected package libevent-openssl-2.1-7t64:amd64. 327s Preparing to unpack .../049-libevent-openssl-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 327s Unpacking libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 327s Selecting previously unselected package libevent-dev. 327s Preparing to unpack .../050-libevent-dev_2.1.12-stable-10build1_amd64.deb ... 327s Unpacking libevent-dev (2.1.12-stable-10build1) ... 328s Selecting previously unselected package libpsm2-2. 328s Preparing to unpack .../051-libpsm2-2_11.2.185-2.1_amd64.deb ... 328s Unpacking libpsm2-2 (11.2.185-2.1) ... 328s Selecting previously unselected package librdmacm1t64:amd64. 328s Preparing to unpack .../052-librdmacm1t64_56.1-1ubuntu1_amd64.deb ... 328s Unpacking librdmacm1t64:amd64 (56.1-1ubuntu1) ... 328s Selecting previously unselected package libfabric1:amd64. 328s Preparing to unpack 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unpack .../058-libxcb-randr0_1.17.0-2build1_amd64.deb ... 328s Unpacking libxcb-randr0:amd64 (1.17.0-2build1) ... 328s Selecting previously unselected package libxcb-sync1:amd64. 328s Preparing to unpack .../059-libxcb-sync1_1.17.0-2build1_amd64.deb ... 328s Unpacking libxcb-sync1:amd64 (1.17.0-2build1) ... 328s Selecting previously unselected package libxcb-xfixes0:amd64. 328s Preparing to unpack .../060-libxcb-xfixes0_1.17.0-2build1_amd64.deb ... 328s Unpacking libxcb-xfixes0:amd64 (1.17.0-2build1) ... 328s Selecting previously unselected package libxshmfence1:amd64. 328s Preparing to unpack .../061-libxshmfence1_1.3.3-1_amd64.deb ... 328s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 328s Selecting previously unselected package mesa-libgallium:amd64. 328s Preparing to unpack .../062-mesa-libgallium_25.2.3-1ubuntu1_amd64.deb ... 328s Unpacking mesa-libgallium:amd64 (25.2.3-1ubuntu1) ... 328s Selecting previously unselected package libgbm1:amd64. 328s Preparing to unpack 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... 328s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 328s Selecting previously unselected package libglx-mesa0:amd64. 328s Preparing to unpack .../069-libglx-mesa0_25.2.3-1ubuntu1_amd64.deb ... 328s Unpacking libglx-mesa0:amd64 (25.2.3-1ubuntu1) ... 328s Selecting previously unselected package libglx0:amd64. 328s Preparing to unpack .../070-libglx0_1.7.0-1build2_amd64.deb ... 328s Unpacking libglx0:amd64 (1.7.0-1build2) ... 328s Selecting previously unselected package libgl1:amd64. 328s Preparing to unpack .../071-libgl1_1.7.0-1build2_amd64.deb ... 328s Unpacking libgl1:amd64 (1.7.0-1build2) ... 328s Selecting previously unselected package libgl2ps1.4. 328s Preparing to unpack .../072-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 328s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 328s Selecting previously unselected package libglew2.2:amd64. 328s Preparing to unpack .../073-libglew2.2_2.2.0-4build1_amd64.deb ... 328s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 328s Selecting previously unselected package libsz2:amd64. 328s Preparing to unpack .../074-libsz2_1.1.3-1_amd64.deb ... 328s Unpacking libsz2:amd64 (1.1.3-1) ... 328s Selecting previously unselected package libhdf5-310:amd64. 328s Preparing to unpack .../075-libhdf5-310_1.14.5+repack-3build1_amd64.deb ... 328s Unpacking libhdf5-310:amd64 (1.14.5+repack-3build1) ... 328s Selecting previously unselected package libhdf5-hl-310:amd64. 328s Preparing to unpack .../076-libhdf5-hl-310_1.14.5+repack-3build1_amd64.deb ... 328s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 328s Selecting previously unselected package libhwloc15:amd64. 328s Preparing to unpack .../077-libhwloc15_2.12.2-1_amd64.deb ... 328s Unpacking libhwloc15:amd64 (2.12.2-1) ... 328s Selecting previously unselected package libjpeg-turbo8:amd64. 328s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 328s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 328s Selecting previously unselected package libjpeg8:amd64. 328s Preparing to unpack .../079-libjpeg8_8c-2ubuntu11_amd64.deb ... 328s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 328s Selecting previously unselected package libjs-jquery. 328s Preparing to unpack .../080-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 328s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 328s Selecting previously unselected package libjs-jquery-ui. 328s Preparing to unpack .../081-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 328s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 328s Selecting previously unselected package libjsoncpp26:amd64. 328s Preparing to unpack .../082-libjsoncpp26_1.9.6-3_amd64.deb ... 328s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 328s Selecting previously unselected package libkim-api2:amd64. 328s Preparing to unpack .../083-libkim-api2_2.3.0-1ubuntu1_amd64.deb ... 328s Unpacking libkim-api2:amd64 (2.3.0-1ubuntu1) ... 328s Selecting previously unselected package liblapack3:amd64. 328s Preparing to unpack .../084-liblapack3_3.12.1-6build1_amd64.deb ... 328s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 328s Selecting previously unselected package libnetcdf22:amd64. 328s Preparing to unpack .../085-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 328s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 329s Selecting previously unselected package libibumad3:amd64. 329s Preparing to unpack .../086-libibumad3_56.1-1ubuntu1_amd64.deb ... 329s Unpacking libibumad3:amd64 (56.1-1ubuntu1) ... 329s Selecting previously unselected package libibmad5:amd64. 329s Preparing to unpack .../087-libibmad5_56.1-1ubuntu1_amd64.deb ... 329s Unpacking libibmad5:amd64 (56.1-1ubuntu1) ... 329s Selecting previously unselected package libucx0:amd64. 329s Preparing to unpack .../088-libucx0_1.19.0+ds-1_amd64.deb ... 329s Unpacking libucx0:amd64 (1.19.0+ds-1) ... 329s Selecting previously unselected package libxnvctrl0:amd64. 329s Preparing to unpack .../089-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 329s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 329s Selecting previously unselected package libze1:amd64. 329s Preparing to unpack .../090-libze1_1.24.1-2_amd64.deb ... 329s Unpacking libze1:amd64 (1.24.1-2) ... 329s Selecting previously unselected package ocl-icd-libopencl1:amd64. 329s Preparing to unpack .../091-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... 329s Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... 329s Selecting previously unselected package libhwloc-plugins:amd64. 329s Preparing to unpack .../092-libhwloc-plugins_2.12.2-1_amd64.deb ... 329s Unpacking libhwloc-plugins:amd64 (2.12.2-1) ... 329s Selecting previously unselected package libopenmpi40:amd64. 329s Preparing to unpack .../093-libopenmpi40_5.0.8-8ubuntu1_amd64.deb ... 329s Unpacking libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 329s Selecting previously unselected package libpnetcdf6:amd64. 329s Preparing to unpack .../094-libpnetcdf6_1.14.0-2_amd64.deb ... 329s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 329s Selecting previously unselected package libvoro++1. 329s Preparing to unpack .../095-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 329s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 329s Selecting previously unselected package libogg0:amd64. 329s Preparing to unpack .../096-libogg0_1.3.5-3build1_amd64.deb ... 329s Unpacking libogg0:amd64 (1.3.5-3build1) ... 329s Selecting previously unselected package libopengl0:amd64. 329s Preparing to unpack .../097-libopengl0_1.7.0-1build2_amd64.deb ... 329s Unpacking libopengl0:amd64 (1.7.0-1build2) ... 329s Selecting previously unselected package proj-data. 329s Preparing to unpack .../098-proj-data_9.6.0-1_all.deb ... 329s Unpacking proj-data (9.6.0-1) ... 329s Selecting previously unselected package libjbig0:amd64. 329s Preparing to unpack .../099-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 329s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 329s Selecting previously unselected package liblerc4:amd64. 329s Preparing to unpack .../100-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 329s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 329s Selecting previously unselected package libsharpyuv0:amd64. 329s Preparing to unpack .../101-libsharpyuv0_1.5.0-0.1_amd64.deb ... 329s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 329s Selecting previously unselected package libwebp7:amd64. 329s Preparing to unpack .../102-libwebp7_1.5.0-0.1_amd64.deb ... 329s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 329s Selecting previously unselected package libtiff6:amd64. 329s Preparing to unpack .../103-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 329s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 329s Selecting previously unselected package libproj25:amd64. 329s Preparing to unpack .../104-libproj25_9.6.0-1_amd64.deb ... 329s Unpacking libproj25:amd64 (9.6.0-1) ... 329s Selecting previously unselected package libtbbbind-2-5:amd64. 329s Preparing to unpack .../105-libtbbbind-2-5_2022.1.0-1_amd64.deb ... 329s Unpacking libtbbbind-2-5:amd64 (2022.1.0-1) ... 329s Selecting previously unselected package libtbbmalloc2:amd64. 329s Preparing to unpack .../106-libtbbmalloc2_2022.1.0-1_amd64.deb ... 329s Unpacking libtbbmalloc2:amd64 (2022.1.0-1) ... 329s Selecting previously unselected package libtbb12:amd64. 329s Preparing to unpack .../107-libtbb12_2022.1.0-1_amd64.deb ... 329s Unpacking libtbb12:amd64 (2022.1.0-1) ... 329s Selecting previously unselected package libtcl8.6:amd64. 329s Preparing to unpack .../108-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 329s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 329s Selecting previously unselected package libtheoradec1:amd64. 329s Preparing to unpack .../109-libtheoradec1_1.2.0~alpha1+dfsg-6_amd64.deb ... 329s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 329s Selecting previously unselected package libtheoraenc1:amd64. 329s Preparing to unpack .../110-libtheoraenc1_1.2.0~alpha1+dfsg-6_amd64.deb ... 329s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 329s Selecting previously unselected package libxft2:amd64. 329s Preparing to unpack .../111-libxft2_2.3.6-1build1_amd64.deb ... 329s Unpacking libxft2:amd64 (2.3.6-1build1) ... 329s Selecting previously unselected package x11-common. 329s Preparing to unpack .../112-x11-common_1%3a7.7+24ubuntu1_all.deb ... 329s Unpacking x11-common (1:7.7+24ubuntu1) ... 329s Selecting previously unselected package libxss1:amd64. 329s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build3_amd64.deb ... 329s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 329s Selecting previously unselected package libtk8.6:amd64. 329s Preparing to unpack .../114-libtk8.6_8.6.17-1_amd64.deb ... 329s Unpacking libtk8.6:amd64 (8.6.17-1) ... 329s Selecting previously unselected package libvtk9.3:amd64. 329s Preparing to unpack .../115-libvtk9.3_9.3.0+dfsg1-4ubuntu2_amd64.deb ... 329s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu2) ... 330s Selecting previously unselected package liblammps0t64:amd64. 330s Preparing to unpack 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/usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode 331s Setting up mpi-default-dev (1.18) ... 331s Setting up liblammps-dev (20250204+dfsg.1-2) ... 331s Setting up python3-lammps (20250204+dfsg.1-2) ... 331s Processing triggers for man-db (2.13.1-1) ... 332s Processing triggers for install-info (7.1.1-1ubuntu1) ... 332s Processing triggers for libc-bin (2.42-0ubuntu3) ... 415s autopkgtest [08:49:57]: test command1: cd python/examples; python3 demo.py 415s autopkgtest [08:49:57]: test command1: [----------------------- 416s LAMMPS (4 Feb 2025) 416s 416s Python output: 416s Natoms, mass, x[0][0] coord = 4000 1.0 16.767988851705528 416s Temperature from compute = 0.7571533403732014 416s Energy from equal-style variable = -5.758142569688168 416s Velocity component from atom-style variable = -1.0131655567386921 416s Volume from get_thermo = 4738.213693437576 416s Natoms from get_natoms = 4000 416s Global coords from gather_atoms = 16.767988851705528 16.621004261651628 0.14158807746974947 416s Changed x[0][0] via scatter_atoms = 17.767988851705528 416s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 416s using 1 OpenMP thread(s) per MPI task 416s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 416s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 416s 1 by 1 by 1 MPI processor grid 416s Created 4000 atoms 416s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 416s create_atoms CPU = 0.001 seconds 416s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 416s Neighbor list info ... 416s update: every = 20 steps, delay = 0 steps, check = no 416s max neighbors/atom: 2000, page size: 100000 416s master list distance cutoff = 2.8 416s ghost atom cutoff = 2.8 416s binsize = 1.4, bins = 12 12 12 416s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 416s (1) pair lj/cut, perpetual 416s attributes: half, newton on 416s pair build: half/bin/atomonly/newton 416s stencil: half/bin/3d 416s bin: standard 416s Setting up Verlet run ... 416s Unit style : lj 416s Current step : 0 416s Time step : 0.005 416s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 416s Step Temp E_pair E_mol TotEng Press 416s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 416s 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 416s Loop time of 0.218055 on 1 procs for 100 steps with 4000 atoms 416s 416s Performance: 198114.966 tau/day, 458.599 timesteps/s, 1.834 Matom-step/s 416s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 416s 416s MPI task timing breakdown: 416s Section | min time | avg time | max time |%varavg| %total 416s --------------------------------------------------------------- 416s Pair | 0.18031 | 0.18031 | 0.18031 | 0.0 | 82.69 416s Neigh | 0.027093 | 0.027093 | 0.027093 | 0.0 | 12.42 416s Comm | 0.0060009 | 0.0060009 | 0.0060009 | 0.0 | 2.75 416s Output | 3.3753e-05 | 3.3753e-05 | 3.3753e-05 | 0.0 | 0.02 416s Modify | 0.0040926 | 0.0040926 | 0.0040926 | 0.0 | 1.88 416s Other | | 0.0005248 | | | 0.24 416s 416s Nlocal: 4000 ave 4000 max 4000 min 416s Histogram: 1 0 0 0 0 0 0 0 0 0 416s Nghost: 5754 ave 5754 max 5754 min 416s Histogram: 1 0 0 0 0 0 0 0 0 0 416s Neighs: 150362 ave 150362 max 150362 min 416s Histogram: 1 0 0 0 0 0 0 0 0 0 416s 416s Total # of neighbors = 150362 416s Ave neighs/atom = 37.5905 416s Neighbor list builds = 5 416s Dangerous builds not checked 416s Total wall time: 0:00:00 416s autopkgtest [08:49:58]: test command1: -----------------------] 417s command1 PASS 417s autopkgtest [08:49:59]: test command1: - - - - - - - - - - results - - - - - - - - - - 417s autopkgtest [08:49:59]: @@@@@@@@@@@@@@@@@@@@ summary 417s crack PASS 417s dipole PASS 417s ellipse PASS 417s flow PASS 417s friction PASS 417s hugo PASS 417s command1 PASS