0s autopkgtest [01:01:45]: starting date and time: 2025-10-19 01:01:45+0000 0s autopkgtest [01:01:45]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [01:01:45]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5wcnc7b0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-5.secgroup --name adt-resolute-amd64-lammps-20251019-010145-juju-7f2275-prod-proposed-migration-environment-15-93103f97-a771-4680-9a9d-cc21697a64ba --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-lammps-20251019-010145-juju-7f2275-prod-proposed-migration-environment-15-93103f97-a771-4680-9a9d-cc21697a64ba from image adt/ubuntu-resolute-amd64-server-20251018.img (UUID dd697a48-b6cc-4a02-84bf-0f9f2fad5f89)... 27s autopkgtest [01:02:12]: testbed dpkg architecture: amd64 27s autopkgtest [01:02:12]: testbed apt version: 3.1.6ubuntu2 27s autopkgtest [01:02:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [01:02:12]: testbed release detected to be: None 28s autopkgtest [01:02:13]: updating testbed package index (apt update) 28s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 28s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 28s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 28s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 28s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 28s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [17.1 kB] 28s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [405 kB] 28s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.0 kB] 28s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [66.7 kB] 28s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [116 kB] 28s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 28s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 28s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [314 kB] 29s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [122 kB] 29s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B] 29s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.5 kB] 29s Fetched 1235 kB in 1s (1831 kB/s) 29s Reading package lists... 30s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 30s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 30s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 30s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 30s Reading package lists... 30s Reading package lists... 30s Building dependency tree... 30s Reading state information... 30s Calculating upgrade... 31s The following packages will be upgraded: 31s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 31s libpython3-stdlib python3 python3-minimal 31s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 31s Need to get 2751 kB of archives. 31s After this operation, 2048 B of additional disk space will be used. 31s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 31s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 31s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 31s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.8ubuntu1 [1140 kB] 31s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.8ubuntu1 [1438 kB] 31s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-1.0-1 amd64 1.86.0-6 [85.9 kB] 31s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-2.0 amd64 1.86.0-6 [25.3 kB] 31s dpkg-preconfigure: unable to re-open stdin: No such file or directory 31s Fetched 2751 kB in 0s (8246 kB/s) 31s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 31s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 31s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 31s Setting up python3-minimal (3.13.7-2) ... 31s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 31s Preparing to unpack .../0-python3_3.13.7-2_amd64.deb ... 31s running python pre-rtupdate hooks for python3.13... 31s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 31s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_amd64.deb ... 31s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 32s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_amd64.deb ... 32s Unpacking libapt-pkg7.0:amd64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 32s Preparing to unpack .../3-apt_3.1.8ubuntu1_amd64.deb ... 32s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 32s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_amd64.deb ... 32s Unpacking libgirepository-1.0-1:amd64 (1.86.0-6) over (1.84.0-1) ... 32s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_amd64.deb ... 32s Unpacking gir1.2-girepository-2.0:amd64 (1.86.0-6) over (1.84.0-1) ... 32s Setting up libgirepository-1.0-1:amd64 (1.86.0-6) ... 32s Setting up libapt-pkg7.0:amd64 (3.1.8ubuntu1) ... 32s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 32s Setting up apt (3.1.8ubuntu1) ... 32s Setting up python3 (3.13.7-2) ... 32s running python rtupdate hooks for python3.13... 32s running python post-rtupdate hooks for python3.13... 32s Setting up gir1.2-girepository-2.0:amd64 (1.86.0-6) ... 32s Processing triggers for man-db (2.13.1-1) ... 33s Processing triggers for libc-bin (2.42-0ubuntu3) ... 33s autopkgtest [01:02:18]: upgrading testbed (apt dist-upgrade and autopurge) 34s Reading package lists... 34s Building dependency tree... 34s Reading state information... 34s Calculating upgrade... 34s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Solving dependencies... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s autopkgtest [01:02:20]: rebooting testbed after setup commands that affected boot 50s autopkgtest [01:02:35]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 52s autopkgtest [01:02:37]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 60s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B] 60s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB] 60s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB] 60s gpgv: Signature made Mon Mar 3 06:11:14 2025 UTC 60s gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 60s gpgv: Can't check signature: No public key 60s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found 64s autopkgtest [01:02:49]: testing package lammps version 20250204+dfsg.1-2 64s autopkgtest [01:02:49]: build not needed 88s autopkgtest [01:03:13]: test crack: preparing testbed 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Solving dependencies... 88s The following NEW packages will be installed: 88s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 88s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 88s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libevent-core-2.1-7t64 88s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 88s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 88s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 88s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libjbig0 88s libjpeg-turbo8 libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 88s liblerc4 libllvm17t64 libnetcdf22 libogg0 libopengl0 libopenmpi40 88s libpciaccess0 libpixman-1-0 libpnetcdf6 libproj25 libpsm2-2 librdmacm1t64 88s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 88s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libucx0 libvoro++1 libvtk9.3 88s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 88s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 88s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 libze1 88s mesa-libgallium mpi-default-bin ocl-icd-libopencl1 openmpi-bin 88s openmpi-common proj-data x11-common 88s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 138 MB of archives. 88s After this operation, 607 MB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 88s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 89s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 89s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 lammps-data all 20250204+dfsg.1-2 [10.2 MB] 90s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 90s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 libllvm17t64 amd64 1:17.0.6-22build1 [25.9 MB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build3 [14.3 MB] 92s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.125-1 [21.6 kB] 92s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsakmt1 amd64 6.2.4+ds-1 [66.8 kB] 92s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsa-runtime64-1 amd64 6.1.2-3 [564 kB] 93s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamdhip64-5 amd64 5.7.1-6 [9698 kB] 93s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 93s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 93s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 93s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 93s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 93s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 93s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 93s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 93s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.3.1-1build1 [42.8 kB] 93s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB] 93s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.125-1 [64.9 kB] 93s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build1 [98.8 kB] 93s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10build1 [8360 B] 93s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 93s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 librdmacm1t64 amd64 56.1-1ubuntu1 [71.4 kB] 93s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfabric1 amd64 2.1.0-1.1 [697 kB] 93s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 93s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build2 [860 kB] 93s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 93s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2build1 [8036 B] 93s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2build1 [6446 B] 93s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2build1 [19.7 kB] 93s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2build1 [10.1 kB] 93s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2build1 [11.1 kB] 93s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 93s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.2.3-1ubuntu1 [11.1 MB] 93s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.2.3-1ubuntu1 [34.0 kB] 93s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 93s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.321.0-1 [154 kB] 93s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.2.3-1ubuntu1 [36.9 kB] 93s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-1build2 [65.1 kB] 93s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2build1 [27.6 kB] 93s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 93s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.2.3-1ubuntu1 [110 kB] 93s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-1build2 [40.3 kB] 93s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-1build2 [101 kB] 93s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 93s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 93s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 93s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 93s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 93s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc15 amd64 2.12.2-1 [181 kB] 93s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 93s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 93s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 93s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 94s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 94s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 94s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libibumad3 amd64 56.1-1ubuntu1 [31.3 kB] 94s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libibmad5 amd64 56.1-1ubuntu1 [44.0 kB] 94s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libucx0 amd64 1.19.0+ds-1 [1308 kB] 94s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 94s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libze1 amd64 1.24.1-2 [599 kB] 94s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 94s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-plugins amd64 2.12.2-1 [22.2 kB] 94s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi40 amd64 5.0.8-8ubuntu1 [3384 kB] 94s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 94s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 94s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 94s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-1build2 [32.6 kB] 94s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.6.0-1 [7955 kB] 94s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 94s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 94s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 94s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 94s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 94s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.6.0-1 [1475 kB] 94s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.7 kB] 94s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbmalloc2 amd64 2022.1.0-1 [53.7 kB] 94s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbb12 amd64 2022.1.0-1 [93.5 kB] 94s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 94s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 94s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 94s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 94s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 94s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 94s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 94s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu2 [25.3 MB] 95s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblammps0t64 amd64 20250204+dfsg.1-2 [7956 kB] 95s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 95s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-bin amd64 5.0.8-8ubuntu1 [201 kB] 95s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 95s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 lammps amd64 20250204+dfsg.1-2 [15.6 kB] 95s Fetched 138 MB in 7s (20.1 MB/s) 95s Selecting previously unselected package fonts-dejavu-mono. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 95s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8) ... 95s Selecting previously unselected package fonts-dejavu-core. 95s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-core (2.37-8) ... 95s Selecting previously unselected package fontconfig-config. 95s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 96s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 96s Selecting previously unselected package lammps-data. 96s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ... 96s Unpacking lammps-data (20250204+dfsg.1-2) ... 96s Selecting previously unselected package libaec0:amd64. 96s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 96s Unpacking libaec0:amd64 (1.1.3-1) ... 96s Selecting previously unselected package libllvm17t64:amd64. 96s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-22build1_amd64.deb ... 96s Unpacking libllvm17t64:amd64 (1:17.0.6-22build1) ... 96s Selecting previously unselected package libamd-comgr2:amd64. 96s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_amd64.deb ... 96s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build3) ... 96s Selecting previously unselected package libdrm-amdgpu1:amd64. 96s Preparing to unpack .../07-libdrm-amdgpu1_2.4.125-1_amd64.deb ... 96s Unpacking libdrm-amdgpu1:amd64 (2.4.125-1) ... 96s Selecting previously unselected package libhsakmt1:amd64. 96s Preparing to unpack .../08-libhsakmt1_6.2.4+ds-1_amd64.deb ... 96s Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... 96s Selecting previously unselected package libhsa-runtime64-1:amd64. 96s Preparing to unpack .../09-libhsa-runtime64-1_6.1.2-3_amd64.deb ... 96s Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... 96s Selecting previously unselected package libamdhip64-5:amd64. 96s Preparing to unpack .../10-libamdhip64-5_5.7.1-6_amd64.deb ... 96s Unpacking libamdhip64-5:amd64 (5.7.1-6) ... 96s Selecting previously unselected package libblas3:amd64. 96s Preparing to unpack .../11-libblas3_3.12.1-6build1_amd64.deb ... 96s Unpacking libblas3:amd64 (3.12.1-6build1) ... 96s Selecting previously unselected package libfontconfig1:amd64. 96s Preparing to unpack .../12-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 96s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 96s Selecting previously unselected package libpixman-1-0:amd64. 96s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_amd64.deb ... 96s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 96s Selecting previously unselected package libxcb-render0:amd64. 96s Preparing to unpack .../14-libxcb-render0_1.17.0-2build1_amd64.deb ... 96s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 96s Selecting previously unselected package libxcb-shm0:amd64. 96s Preparing to unpack .../15-libxcb-shm0_1.17.0-2build1_amd64.deb ... 96s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 96s Selecting previously unselected package libxrender1:amd64. 96s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_amd64.deb ... 96s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 96s Selecting previously unselected package libcairo2:amd64. 96s Preparing to unpack .../17-libcairo2_1.18.4-1build1_amd64.deb ... 96s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 96s Selecting previously unselected package libdeflate0:amd64. 96s Preparing to unpack .../18-libdeflate0_1.23-2_amd64.deb ... 96s Unpacking libdeflate0:amd64 (1.23-2) ... 96s Selecting previously unselected package libdouble-conversion3:amd64. 96s Preparing to unpack .../19-libdouble-conversion3_3.3.1-1build1_amd64.deb ... 96s Unpacking libdouble-conversion3:amd64 (3.3.1-1build1) ... 97s Selecting previously unselected package libpciaccess0:amd64. 97s Preparing to unpack .../20-libpciaccess0_0.18.1-1ubuntu2_amd64.deb ... 97s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu2) ... 97s Selecting previously unselected package libdrm-intel1:amd64. 97s Preparing to unpack .../21-libdrm-intel1_2.4.125-1_amd64.deb ... 97s Unpacking libdrm-intel1:amd64 (2.4.125-1) ... 97s Selecting previously unselected package libevent-core-2.1-7t64:amd64. 97s Preparing to unpack .../22-libevent-core-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 97s Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 97s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 97s Preparing to unpack .../23-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 97s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 97s Selecting previously unselected package libpsm2-2. 97s Preparing to unpack .../24-libpsm2-2_11.2.185-2.1_amd64.deb ... 97s Unpacking libpsm2-2 (11.2.185-2.1) ... 97s Selecting previously unselected package librdmacm1t64:amd64. 97s Preparing to unpack .../25-librdmacm1t64_56.1-1ubuntu1_amd64.deb ... 97s Unpacking librdmacm1t64:amd64 (56.1-1ubuntu1) ... 97s Selecting previously unselected package libfabric1:amd64. 97s Preparing to unpack .../26-libfabric1_2.1.0-1.1_amd64.deb ... 97s Unpacking libfabric1:amd64 (2.1.0-1.1) ... 97s Selecting previously unselected package libgomp1:amd64. 97s Preparing to unpack .../27-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 97s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 97s Selecting previously unselected package libfftw3-double3:amd64. 97s Preparing to unpack .../28-libfftw3-double3_3.3.10-2fakesync1build2_amd64.deb ... 97s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build2) ... 97s Selecting previously unselected package libx11-xcb1:amd64. 97s Preparing to unpack .../29-libx11-xcb1_2%3a1.8.12-1build1_amd64.deb ... 97s Unpacking libx11-xcb1:amd64 (2:1.8.12-1build1) ... 97s Selecting previously unselected package libxcb-dri3-0:amd64. 97s Preparing to unpack .../30-libxcb-dri3-0_1.17.0-2build1_amd64.deb ... 97s Unpacking libxcb-dri3-0:amd64 (1.17.0-2build1) ... 97s Selecting previously unselected package libxcb-present0:amd64. 97s Preparing to unpack .../31-libxcb-present0_1.17.0-2build1_amd64.deb ... 97s Unpacking libxcb-present0:amd64 (1.17.0-2build1) ... 97s Selecting previously unselected package libxcb-randr0:amd64. 97s Preparing to unpack .../32-libxcb-randr0_1.17.0-2build1_amd64.deb ... 97s Unpacking libxcb-randr0:amd64 (1.17.0-2build1) ... 97s Selecting previously unselected package libxcb-sync1:amd64. 97s Preparing to unpack .../33-libxcb-sync1_1.17.0-2build1_amd64.deb ... 97s Unpacking libxcb-sync1:amd64 (1.17.0-2build1) ... 97s Selecting previously unselected package libxcb-xfixes0:amd64. 97s Preparing to unpack .../34-libxcb-xfixes0_1.17.0-2build1_amd64.deb ... 97s Unpacking libxcb-xfixes0:amd64 (1.17.0-2build1) ... 97s Selecting previously unselected package libxshmfence1:amd64. 97s Preparing to unpack .../35-libxshmfence1_1.3.3-1_amd64.deb ... 97s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 97s Selecting previously unselected package mesa-libgallium:amd64. 97s Preparing to unpack .../36-mesa-libgallium_25.2.3-1ubuntu1_amd64.deb ... 97s Unpacking mesa-libgallium:amd64 (25.2.3-1ubuntu1) ... 97s Selecting previously unselected package libgbm1:amd64. 97s Preparing to unpack .../37-libgbm1_25.2.3-1ubuntu1_amd64.deb ... 97s Unpacking libgbm1:amd64 (25.2.3-1ubuntu1) ... 97s Selecting previously unselected package libgfortran5:amd64. 97s Preparing to unpack .../38-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 97s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 97s Selecting previously unselected package libvulkan1:amd64. 97s Preparing to unpack .../39-libvulkan1_1.4.321.0-1_amd64.deb ... 97s Unpacking libvulkan1:amd64 (1.4.321.0-1) ... 97s Selecting previously unselected package libgl1-mesa-dri:amd64. 97s Preparing to unpack .../40-libgl1-mesa-dri_25.2.3-1ubuntu1_amd64.deb ... 97s Unpacking libgl1-mesa-dri:amd64 (25.2.3-1ubuntu1) ... 97s Selecting previously unselected package libglvnd0:amd64. 97s Preparing to unpack .../41-libglvnd0_1.7.0-1build2_amd64.deb ... 97s Unpacking libglvnd0:amd64 (1.7.0-1build2) ... 97s Selecting previously unselected package libxcb-glx0:amd64. 97s Preparing to unpack .../42-libxcb-glx0_1.17.0-2build1_amd64.deb ... 97s Unpacking libxcb-glx0:amd64 (1.17.0-2build1) ... 97s Selecting previously unselected package libxxf86vm1:amd64. 97s Preparing to unpack .../43-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 97s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 97s Selecting previously unselected package libglx-mesa0:amd64. 97s Preparing to unpack .../44-libglx-mesa0_25.2.3-1ubuntu1_amd64.deb ... 97s Unpacking libglx-mesa0:amd64 (25.2.3-1ubuntu1) ... 97s Selecting previously unselected package libglx0:amd64. 97s Preparing to unpack .../45-libglx0_1.7.0-1build2_amd64.deb ... 97s Unpacking libglx0:amd64 (1.7.0-1build2) ... 97s Selecting previously unselected package libgl1:amd64. 97s Preparing to unpack .../46-libgl1_1.7.0-1build2_amd64.deb ... 97s Unpacking libgl1:amd64 (1.7.0-1build2) ... 97s Selecting previously unselected package libgl2ps1.4. 97s Preparing to unpack .../47-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 97s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 97s Selecting previously unselected package libglew2.2:amd64. 97s Preparing to unpack .../48-libglew2.2_2.2.0-4build1_amd64.deb ... 97s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 97s Selecting previously unselected package libsz2:amd64. 97s Preparing to unpack .../49-libsz2_1.1.3-1_amd64.deb ... 97s Unpacking libsz2:amd64 (1.1.3-1) ... 97s Selecting previously unselected package libhdf5-310:amd64. 97s Preparing to unpack .../50-libhdf5-310_1.14.5+repack-3build1_amd64.deb ... 97s Unpacking libhdf5-310:amd64 (1.14.5+repack-3build1) ... 97s Selecting previously unselected package libhdf5-hl-310:amd64. 97s Preparing to unpack .../51-libhdf5-hl-310_1.14.5+repack-3build1_amd64.deb ... 97s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 97s Selecting previously unselected package libhwloc15:amd64. 97s Preparing to unpack .../52-libhwloc15_2.12.2-1_amd64.deb ... 97s Unpacking libhwloc15:amd64 (2.12.2-1) ... 97s Selecting previously unselected package libjpeg-turbo8:amd64. 97s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 97s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 97s Selecting previously unselected package libjpeg8:amd64. 97s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_amd64.deb ... 97s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 97s Selecting previously unselected package libjsoncpp26:amd64. 97s Preparing to unpack .../55-libjsoncpp26_1.9.6-3_amd64.deb ... 97s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 97s Selecting previously unselected package libkim-api2:amd64. 97s Preparing to unpack .../56-libkim-api2_2.3.0-1ubuntu1_amd64.deb ... 97s Unpacking libkim-api2:amd64 (2.3.0-1ubuntu1) ... 97s Selecting previously unselected package liblapack3:amd64. 97s Preparing to unpack .../57-liblapack3_3.12.1-6build1_amd64.deb ... 97s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 97s Selecting previously unselected package libnetcdf22:amd64. 97s Preparing to unpack .../58-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 97s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 97s Selecting previously unselected package libibumad3:amd64. 97s Preparing to unpack .../59-libibumad3_56.1-1ubuntu1_amd64.deb ... 97s Unpacking libibumad3:amd64 (56.1-1ubuntu1) ... 97s Selecting previously unselected package libibmad5:amd64. 97s Preparing to unpack .../60-libibmad5_56.1-1ubuntu1_amd64.deb ... 97s Unpacking libibmad5:amd64 (56.1-1ubuntu1) ... 97s Selecting previously unselected package libucx0:amd64. 97s Preparing to unpack .../61-libucx0_1.19.0+ds-1_amd64.deb ... 97s Unpacking libucx0:amd64 (1.19.0+ds-1) ... 97s Selecting previously unselected package libxnvctrl0:amd64. 97s Preparing to unpack .../62-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 97s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 97s Selecting previously unselected package libze1:amd64. 97s Preparing to unpack .../63-libze1_1.24.1-2_amd64.deb ... 97s Unpacking libze1:amd64 (1.24.1-2) ... 97s Selecting previously unselected package ocl-icd-libopencl1:amd64. 97s Preparing to unpack .../64-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... 97s Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... 97s Selecting previously unselected package libhwloc-plugins:amd64. 97s Preparing to unpack .../65-libhwloc-plugins_2.12.2-1_amd64.deb ... 97s Unpacking libhwloc-plugins:amd64 (2.12.2-1) ... 97s Selecting previously unselected package libopenmpi40:amd64. 97s Preparing to unpack .../66-libopenmpi40_5.0.8-8ubuntu1_amd64.deb ... 97s Unpacking libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 97s Selecting previously unselected package libpnetcdf6:amd64. 97s Preparing to unpack .../67-libpnetcdf6_1.14.0-2_amd64.deb ... 97s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 97s Selecting previously unselected package libvoro++1. 97s Preparing to unpack .../68-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 97s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 97s Selecting previously unselected package libogg0:amd64. 97s Preparing to unpack .../69-libogg0_1.3.5-3build1_amd64.deb ... 97s Unpacking libogg0:amd64 (1.3.5-3build1) ... 97s Selecting previously unselected package libopengl0:amd64. 97s Preparing to unpack .../70-libopengl0_1.7.0-1build2_amd64.deb ... 97s Unpacking libopengl0:amd64 (1.7.0-1build2) ... 97s Selecting previously unselected package proj-data. 97s Preparing to unpack .../71-proj-data_9.6.0-1_all.deb ... 97s Unpacking proj-data (9.6.0-1) ... 97s Selecting previously unselected package libjbig0:amd64. 97s Preparing to unpack .../72-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 97s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 97s Selecting previously unselected package liblerc4:amd64. 97s Preparing to unpack .../73-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 97s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 97s Selecting previously unselected package libsharpyuv0:amd64. 97s Preparing to unpack .../74-libsharpyuv0_1.5.0-0.1_amd64.deb ... 97s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 97s Selecting previously unselected package libwebp7:amd64. 97s Preparing to unpack .../75-libwebp7_1.5.0-0.1_amd64.deb ... 97s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 97s Selecting previously unselected package libtiff6:amd64. 97s Preparing to unpack .../76-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 97s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 97s Selecting previously unselected package libproj25:amd64. 97s Preparing to unpack .../77-libproj25_9.6.0-1_amd64.deb ... 97s Unpacking libproj25:amd64 (9.6.0-1) ... 97s Selecting previously unselected package libtbbbind-2-5:amd64. 97s Preparing to unpack .../78-libtbbbind-2-5_2022.1.0-1_amd64.deb ... 97s Unpacking libtbbbind-2-5:amd64 (2022.1.0-1) ... 97s Selecting previously unselected package libtbbmalloc2:amd64. 97s Preparing to unpack .../79-libtbbmalloc2_2022.1.0-1_amd64.deb ... 97s Unpacking libtbbmalloc2:amd64 (2022.1.0-1) ... 98s Selecting previously unselected package libtbb12:amd64. 98s Preparing to unpack .../80-libtbb12_2022.1.0-1_amd64.deb ... 98s Unpacking libtbb12:amd64 (2022.1.0-1) ... 98s Selecting previously unselected package libtcl8.6:amd64. 98s Preparing to unpack .../81-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 98s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 98s Selecting previously unselected package libtheoradec1:amd64. 98s Preparing to unpack .../82-libtheoradec1_1.2.0~alpha1+dfsg-6_amd64.deb ... 98s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 98s Selecting previously unselected package libtheoraenc1:amd64. 98s Preparing to unpack .../83-libtheoraenc1_1.2.0~alpha1+dfsg-6_amd64.deb ... 98s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 98s Selecting previously unselected package libxft2:amd64. 98s Preparing to unpack .../84-libxft2_2.3.6-1build1_amd64.deb ... 98s Unpacking libxft2:amd64 (2.3.6-1build1) ... 98s Selecting previously unselected package x11-common. 98s Preparing to unpack .../85-x11-common_1%3a7.7+24ubuntu1_all.deb ... 98s Unpacking x11-common (1:7.7+24ubuntu1) ... 98s Selecting previously unselected package libxss1:amd64. 98s Preparing to unpack .../86-libxss1_1%3a1.2.3-1build3_amd64.deb ... 98s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 98s Selecting previously unselected package libtk8.6:amd64. 98s Preparing to unpack .../87-libtk8.6_8.6.17-1_amd64.deb ... 98s Unpacking libtk8.6:amd64 (8.6.17-1) ... 98s Selecting previously unselected package libvtk9.3:amd64. 98s Preparing to unpack .../88-libvtk9.3_9.3.0+dfsg1-4ubuntu2_amd64.deb ... 98s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu2) ... 98s Selecting previously unselected package liblammps0t64:amd64. 98s Preparing to unpack .../89-liblammps0t64_20250204+dfsg.1-2_amd64.deb ... 98s Unpacking liblammps0t64:amd64 (20250204+dfsg.1-2) ... 98s Selecting previously unselected package openmpi-common. 98s Preparing to unpack .../90-openmpi-common_5.0.8-8ubuntu1_all.deb ... 98s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 98s Selecting previously unselected package openmpi-bin. 98s Preparing to unpack .../91-openmpi-bin_5.0.8-8ubuntu1_amd64.deb ... 98s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 98s Selecting previously unselected package mpi-default-bin. 98s Preparing to unpack .../92-mpi-default-bin_1.18_amd64.deb ... 98s Unpacking mpi-default-bin (1.18) ... 98s Selecting previously unselected package lammps. 98s Preparing to unpack .../93-lammps_20250204+dfsg.1-2_amd64.deb ... 98s Unpacking lammps (20250204+dfsg.1-2) ... 98s Setting up libxcb-dri3-0:amd64 (1.17.0-2build1) ... 98s Setting up libtbbmalloc2:amd64 (2022.1.0-1) ... 98s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 98s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 98s Setting up libx11-xcb1:amd64 (2:1.8.12-1build1) ... 98s Setting up libpciaccess0:amd64 (0.18.1-1ubuntu2) ... 98s Setting up libdouble-conversion3:amd64 (3.3.1-1build1) ... 98s Setting up libxcb-xfixes0:amd64 (1.17.0-2build1) ... 98s Setting up libogg0:amd64 (1.3.5-3build1) ... 98s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 98s Setting up proj-data (9.6.0-1) ... 98s Setting up libxrender1:amd64 (1:0.9.12-1) ... 98s Setting up lammps-data (20250204+dfsg.1-2) ... 98s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 98s Setting up libglvnd0:amd64 (1.7.0-1build2) ... 98s Setting up libxcb-glx0:amd64 (1.17.0-2build1) ... 98s Setting up libdrm-intel1:amd64 (2.4.125-1) ... 98s Setting up x11-common (1:7.7+24ubuntu1) ... 98s Setting up libibumad3:amd64 (56.1-1ubuntu1) ... 98s Setting up libdeflate0:amd64 (1.23-2) ... 98s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 98s Setting up libibmad5:amd64 (56.1-1ubuntu1) ... 98s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 98s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 98s Setting up libaec0:amd64 (1.1.3-1) ... 98s Setting up libze1:amd64 (1.24.1-2) ... 98s Setting up libopengl0:amd64 (1.7.0-1build2) ... 98s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 98s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 98s Setting up libxcb-present0:amd64 (1.17.0-2build1) ... 98s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 98s Setting up libblas3:amd64 (3.12.1-6build1) ... 98s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 98s Setting up libllvm17t64:amd64 (1:17.0.6-22build1) ... 98s Setting up libxcb-sync1:amd64 (1.17.0-2build1) ... 98s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 98s Setting up fonts-dejavu-mono (2.37-8) ... 98s Setting up libhwloc15:amd64 (2.12.2-1) ... 98s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 98s Setting up fonts-dejavu-core (2.37-8) ... 98s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 98s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1build2) ... 98s Setting up libgfortran5:amd64 (15.2.0-5ubuntu1) ... 98s Setting up libvulkan1:amd64 (1.4.321.0-1) ... 98s Setting up libwebp7:amd64 (1.5.0-0.1) ... 98s Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... 98s Setting up libxshmfence1:amd64 (1.3.3-1) ... 98s Setting up libxcb-randr0:amd64 (1.17.0-2build1) ... 98s Setting up libpsm2-2 (11.2.185-2.1) ... 98s Setting up openmpi-common (5.0.8-8ubuntu1) ... 98s Setting up librdmacm1t64:amd64 (56.1-1ubuntu1) ... 98s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 98s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build3) ... 98s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 98s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 98s Setting up libsz2:amd64 (1.1.3-1) ... 98s Setting up libdrm-amdgpu1:amd64 (2.4.125-1) ... 98s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 98s Setting up libfabric1:amd64 (2.1.0-1.1) ... 98s Setting up mesa-libgallium:amd64 (25.2.3-1ubuntu1) ... 98s Setting up liblapack3:amd64 (3.12.1-6build1) ... 98s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 98s Setting up libgbm1:amd64 (25.2.3-1ubuntu1) ... 98s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 98s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 98s Setting up libgl1-mesa-dri:amd64 (25.2.3-1ubuntu1) ... 98s Setting up libkim-api2:amd64 (2.3.0-1ubuntu1) ... 98s Setting up libhwloc-plugins:amd64 (2.12.2-1) ... 98s Setting up libtbbbind-2-5:amd64 (2022.1.0-1) ... 98s Setting up libhdf5-310:amd64 (1.14.5+repack-3build1) ... 98s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 98s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 98s Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... 98s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 98s Setting up libxft2:amd64 (2.3.6-1build1) ... 98s Setting up libglx-mesa0:amd64 (25.2.3-1ubuntu1) ... 99s Setting up libglx0:amd64 (1.7.0-1build2) ... 99s Setting up libproj25:amd64 (9.6.0-1) ... 99s Setting up libtk8.6:amd64 (8.6.17-1) ... 99s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ... 99s Setting up libtbb12:amd64 (2022.1.0-1) ... 99s Setting up libcairo2:amd64 (1.18.4-1build1) ... 99s Setting up libgl1:amd64 (1.7.0-1build2) ... 99s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 99s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 99s Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... 99s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 99s Setting up libamdhip64-5:amd64 (5.7.1-6) ... 99s Setting up libucx0:amd64 (1.19.0+ds-1) ... 99s Setting up libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 99s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 99s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu2) ... 99s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 99s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 99s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 99s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 99s Setting up mpi-default-bin (1.18) ... 99s Setting up liblammps0t64:amd64 (20250204+dfsg.1-2) ... 99s Setting up lammps (20250204+dfsg.1-2) ... 99s Processing triggers for man-db (2.13.1-1) ... 99s Processing triggers for libc-bin (2.42-0ubuntu3) ... 100s autopkgtest [01:03:25]: test crack: [----------------------- 100s LAMMPS (4 Feb 2025) 100s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 100s using 1 OpenMP thread(s) per MPI task 100s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 100s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 100s 2 by 1 by 1 MPI processor grid 100s Created 8141 atoms 100s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 100s create_atoms CPU = 0.000 seconds 100s 302 atoms in group lower 100s 302 atoms in group upper 100s 604 atoms in group boundary 100s 7537 atoms in group mobile 100s 841 atoms in group leftupper 100s 841 atoms in group leftlower 100s Setting atom values ... 100s 841 settings made for type 100s Setting atom values ... 100s 841 settings made for type 100s Setting atom values ... 100s 302 settings made for type 100s Setting atom values ... 100s 302 settings made for type 100s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 100s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 100s Neighbor list info ... 100s update: every = 1 steps, delay = 5 steps, check = yes 100s max neighbors/atom: 2000, page size: 100000 100s master list distance cutoff = 2.8 100s ghost atom cutoff = 2.8 100s binsize = 1.4, bins = 80 56 1 100s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 100s (1) pair lj/cut, perpetual 100s attributes: half, newton on 100s pair build: half/bin/atomonly/newton 100s stencil: half/bin/2d 100s bin: standard 100s Setting up Verlet run ... 100s Unit style : lj 100s Current step : 0 100s Time step : 0.003 100s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 100s Step Temp E_pair E_mol TotEng Press Volume 100s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 100s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 100s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 100s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 100s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 100s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 100s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 100s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 101s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 101s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 101s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 101s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 101s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 101s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 101s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 101s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 101s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 101s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 101s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 101s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 101s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 101s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 101s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 101s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 101s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 101s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 101s Loop time of 1.30139 on 2 procs for 5000 steps with 8141 atoms 101s 101s Performance: 995858.135 tau/day, 3842.045 timesteps/s, 31.278 Matom-step/s 101s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 101s 101s MPI task timing breakdown: 101s Section | min time | avg time | max time |%varavg| %total 101s --------------------------------------------------------------- 101s Pair | 0.97059 | 0.97889 | 0.98718 | 0.8 | 75.22 101s Neigh | 0.066791 | 0.072262 | 0.077734 | 2.0 | 5.55 101s Comm | 0.066232 | 0.079573 | 0.092913 | 4.7 | 6.11 101s Output | 0.00071406 | 0.0010825 | 0.0014509 | 1.1 | 0.08 101s Modify | 0.13031 | 0.13085 | 0.13139 | 0.1 | 10.05 101s Other | | 0.03874 | | | 2.98 101s 101s Nlocal: 4070.5 ave 4085 max 4056 min 101s Histogram: 1 0 0 0 0 0 0 0 0 1 101s Nghost: 207 ave 208 max 206 min 101s Histogram: 1 0 0 0 0 0 0 0 0 1 101s Neighs: 35700 ave 35927 max 35473 min 101s Histogram: 1 0 0 0 0 0 0 0 0 1 101s 101s Total # of neighbors = 71400 101s Ave neighs/atom = 8.7704213 101s Neighbor list builds = 106 101s Dangerous builds = 0 101s Total wall time: 0:00:01 102s LAMMPS (4 Feb 2025) 104s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 104s using 1 OpenMP thread(s) per MPI task 104s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 104s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 104s 1 by 1 by 1 MPI processor grid 104s Created 8141 atoms 104s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 104s create_atoms CPU = 0.000 seconds 104s 302 atoms in group lower 104s 302 atoms in group upper 104s 604 atoms in group boundary 104s 7537 atoms in group mobile 104s 841 atoms in group leftupper 104s 841 atoms in group leftlower 104s Setting atom values ... 104s 841 settings made for type 104s Setting atom values ... 104s 841 settings made for type 104s Setting atom values ... 104s 302 settings made for type 104s Setting atom values ... 104s 302 settings made for type 104s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 104s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 104s Neighbor list info ... 104s update: every = 1 steps, delay = 5 steps, check = yes 104s max neighbors/atom: 2000, page size: 100000 104s master list distance cutoff = 2.8 104s ghost atom cutoff = 2.8 104s binsize = 1.4, bins = 80 56 1 104s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 104s (1) pair lj/cut, perpetual 104s attributes: half, newton on 104s pair build: half/bin/atomonly/newton 104s stencil: half/bin/2d 104s bin: standard 104s Setting up Verlet run ... 104s Unit style : lj 104s Current step : 0 104s Time step : 0.003 104s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 104s Step Temp E_pair E_mol TotEng Press Volume 104s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 104s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 104s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 104s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 104s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 104s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 104s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 104s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 104s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 104s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 104s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 104s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 104s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 104s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 104s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 104s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 104s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 104s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 104s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 104s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 104s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 104s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 104s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 104s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 104s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 104s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 104s Loop time of 2.47466 on 1 procs for 5000 steps with 8141 atoms 104s 104s Performance: 523707.349 tau/day, 2020.476 timesteps/s, 16.449 Matom-step/s 104s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 104s 104s MPI task timing breakdown: 104s Section | min time | avg time | max time |%varavg| %total 104s --------------------------------------------------------------- 104s Pair | 2.0143 | 2.0143 | 2.0143 | 0.0 | 81.40 104s Neigh | 0.13682 | 0.13682 | 0.13682 | 0.0 | 5.53 104s Comm | 0.0024172 | 0.0024172 | 0.0024172 | 0.0 | 0.10 104s Output | 0.0012604 | 0.0012604 | 0.0012604 | 0.0 | 0.05 104s Modify | 0.2625 | 0.2625 | 0.2625 | 0.0 | 10.61 104s Other | | 0.05736 | | | 2.32 104s 104s Nlocal: 8141 ave 8141 max 8141 min 104s Histogram: 1 0 0 0 0 0 0 0 0 0 104s Nghost: 0 ave 0 max 0 min 104s Histogram: 1 0 0 0 0 0 0 0 0 0 104s Neighs: 71389 ave 71389 max 71389 min 104s Histogram: 1 0 0 0 0 0 0 0 0 0 104s 104s Total # of neighbors = 71389 104s Ave neighs/atom = 8.7690701 104s Neighbor list builds = 100 104s Dangerous builds = 0 104s Total wall time: 0:00:02 104s run: OK 104s autopkgtest [01:03:29]: test crack: -----------------------] 105s autopkgtest [01:03:30]: test crack: - - - - - - - - - - results - - - - - - - - - - 105s crack PASS 105s autopkgtest [01:03:30]: test dipole: preparing testbed 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Solving dependencies... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [01:03:31]: test dipole: [----------------------- 106s LAMMPS (4 Feb 2025) 106s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 106s using 1 OpenMP thread(s) per MPI task 106s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 106s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 106s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 106s 2 by 1 by 1 MPI processor grid 106s Created 200 atoms 106s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 106s create_atoms CPU = 0.000 seconds 106s Setting atom values ... 106s 200 settings made for mass 106s Setting atom values ... 106s 200 settings made for dipole/random 106s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 106s Neighbor list info ... 106s update: every = 1 steps, delay = 0 steps, check = yes 106s max neighbors/atom: 2000, page size: 100000 106s master list distance cutoff = 2.8 106s ghost atom cutoff = 2.8 106s binsize = 1.4, bins = 13 13 2 106s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 106s (1) pair lj/cut/dipole/cut, perpetual 106s attributes: half, newton on 106s pair build: half/bin/atomonly/newton 106s stencil: half/bin/2d 106s bin: standard 106s Setting up Verlet run ... 106s Unit style : lj 106s Current step : 0 106s Time step : 0.005 106s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 106s Step Temp E_pair c_erot TotEng Press 106s 0 0 -2.1909822 0 -2.1909822 -2.5750971 106s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 106s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 106s 1500 0.4211022 -2.8019061 0.19532181 -2.3829095 0.18067145 106s 2000 0.39019874 -2.7914862 0.22407011 -2.4032384 -0.40912648 107s 2500 0.40189542 -2.8134715 0.24278607 -2.4135855 -0.33547386 107s 3000 0.45253597 -2.8432831 0.22668907 -2.3930098 0.031945804 107s 3500 0.45543566 -2.80999 0.19086399 -2.3568315 0.029485295 107s 4000 0.40085091 -2.7761517 0.21847799 -2.3773051 -0.033769965 107s 4500 0.40189931 -2.7615835 0.20362841 -2.3616937 -0.17414063 107s 5000 0.41734987 -2.7649581 0.19662779 -2.349695 -0.36355203 107s 5500 0.39968404 -2.7679046 0.21787398 -2.370219 -0.2095 107s 6000 0.40475829 -2.8111506 0.26462853 -2.4084161 -0.073266954 107s 6500 0.41521558 -2.7828455 0.21593344 -2.369706 0.044857105 107s 7000 0.37923394 -2.7298781 0.19612107 -2.3525403 -0.41777291 107s 7500 0.42362281 -2.8061905 0.22489406 -2.3846858 0.26268515 107s 8000 0.43091638 -2.8618864 0.27325823 -2.4331247 -0.4441066 107s 8500 0.4921082 -2.8591309 0.21247682 -2.3694833 -0.1929702 107s 9000 0.42828025 -2.7900322 0.20827254 -2.3638934 -0.29757579 107s 9500 0.41689981 -2.7717449 0.21413721 -2.3569296 -0.16341068 107s 10000 0.46694926 -2.8131859 0.21390049 -2.3485714 -0.37713307 107s Loop time of 0.334872 on 2 procs for 10000 steps with 200 atoms 107s 107s Performance: 12900464.537 tau/day, 29862.186 timesteps/s, 5.972 Matom-step/s 107s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 107s 107s MPI task timing breakdown: 107s Section | min time | avg time | max time |%varavg| %total 107s --------------------------------------------------------------- 107s Pair | 0.19636 | 0.2072 | 0.21804 | 2.4 | 61.87 107s Neigh | 0.011443 | 0.011865 | 0.012287 | 0.4 | 3.54 107s Comm | 0.073122 | 0.085673 | 0.098224 | 4.3 | 25.58 107s Output | 0.00029165 | 0.00049805 | 0.00070445 | 0.0 | 0.15 107s Modify | 0.017299 | 0.017365 | 0.017431 | 0.1 | 5.19 107s Other | | 0.01227 | | | 3.66 107s 107s Nlocal: 100 ave 101 max 99 min 107s Histogram: 1 0 0 0 0 0 0 0 0 1 107s Nghost: 129 ave 129 max 129 min 107s Histogram: 2 0 0 0 0 0 0 0 0 0 107s Neighs: 827.5 ave 843 max 812 min 107s Histogram: 1 0 0 0 0 0 0 0 0 1 107s 107s Total # of neighbors = 1655 107s Ave neighs/atom = 8.275 107s Neighbor list builds = 679 107s Dangerous builds = 0 107s Total wall time: 0:00:00 107s LAMMPS (4 Feb 2025) 107s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 107s using 1 OpenMP thread(s) per MPI task 107s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 107s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 107s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 107s 1 by 1 by 1 MPI processor grid 107s Created 200 atoms 107s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 107s create_atoms CPU = 0.000 seconds 107s Setting atom values ... 107s 200 settings made for mass 107s Setting atom values ... 107s 200 settings made for dipole/random 107s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 107s Neighbor list info ... 107s update: every = 1 steps, delay = 0 steps, check = yes 107s max neighbors/atom: 2000, page size: 100000 107s master list distance cutoff = 2.8 107s ghost atom cutoff = 2.8 107s binsize = 1.4, bins = 13 13 2 107s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 107s (1) pair lj/cut/dipole/cut, perpetual 107s attributes: half, newton on 107s pair build: half/bin/atomonly/newton 107s stencil: half/bin/2d 107s bin: standard 107s Setting up Verlet run ... 107s Unit style : lj 107s Current step : 0 107s Time step : 0.005 107s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 107s Step Temp E_pair c_erot TotEng Press 107s 0 0 -2.1909822 0 -2.1909822 -2.5750971 107s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 107s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 107s 1500 0.42110221 -2.8019062 0.19532181 -2.3829095 0.18067141 107s 2000 0.39019964 -2.7914873 0.2240704 -2.4032387 -0.40914108 107s 2500 0.40258219 -2.8140936 0.24274448 -2.4135243 -0.33941924 107s 3000 0.41800133 -2.8282056 0.24466746 -2.4122942 -0.090527465 107s 3500 0.40116089 -2.7573067 0.18791549 -2.3581517 -0.10988473 107s 4000 0.44069383 -2.8320262 0.23306586 -2.3935358 -0.16090586 107s 4500 0.39984934 -2.7780055 0.2316558 -2.3801554 -0.060493508 107s 5000 0.38478499 -2.7506484 0.22192236 -2.3677873 -0.20522733 107s 5500 0.41563657 -2.7772758 0.21967501 -2.3637174 -0.21224098 107s 6000 0.4784307 -2.8050644 0.19178566 -2.3290259 -0.084370417 107s 6500 0.45915752 -2.8043874 0.21761744 -2.3475257 0.044744498 107s 7000 0.45492064 -2.7795535 0.20340455 -2.3269074 -0.027924625 107s 7500 0.41266295 -2.7515872 0.22903767 -2.3409876 -0.43730101 107s 8000 0.41905675 -2.7281536 0.19413869 -2.3111921 -0.020762772 107s 8500 0.42951176 -2.7616497 0.22863785 -2.3342855 -0.18867239 107s 9000 0.42532413 -2.748856 0.21378021 -2.3256584 0.015079949 107s 9500 0.42237159 -2.7266142 0.20255034 -2.3063545 -0.15538561 107s 10000 0.40758268 -2.778401 0.2746675 -2.3728562 -0.20811978 107s Loop time of 0.458327 on 1 procs for 10000 steps with 200 atoms 107s 107s Performance: 9425576.934 tau/day, 21818.465 timesteps/s, 4.364 Matom-step/s 107s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 107s 107s MPI task timing breakdown: 107s Section | min time | avg time | max time |%varavg| %total 107s --------------------------------------------------------------- 107s Pair | 0.3796 | 0.3796 | 0.3796 | 0.0 | 82.82 107s Neigh | 0.021691 | 0.021691 | 0.021691 | 0.0 | 4.73 107s Comm | 0.01771 | 0.01771 | 0.01771 | 0.0 | 3.86 107s Output | 0.00015254 | 0.00015254 | 0.00015254 | 0.0 | 0.03 107s Modify | 0.032585 | 0.032585 | 0.032585 | 0.0 | 7.11 107s Other | | 0.006589 | | | 1.44 107s 107s Nlocal: 200 ave 200 max 200 min 107s Histogram: 1 0 0 0 0 0 0 0 0 0 107s Nghost: 162 ave 162 max 162 min 107s Histogram: 1 0 0 0 0 0 0 0 0 0 107s Neighs: 1625 ave 1625 max 1625 min 107s Histogram: 1 0 0 0 0 0 0 0 0 0 107s 107s Total # of neighbors = 1625 107s Ave neighs/atom = 8.125 107s Neighbor list builds = 673 107s Dangerous builds = 0 107s Total wall time: 0:00:00 107s run: OK 108s autopkgtest [01:03:33]: test dipole: -----------------------] 108s autopkgtest [01:03:33]: test dipole: - - - - - - - - - - results - - - - - - - - - - 108s dipole PASS 108s autopkgtest [01:03:33]: test ellipse: preparing testbed 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Solving dependencies... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [01:03:34]: test ellipse: [----------------------- 110s LAMMPS (4 Feb 2025) 110s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 110s using 1 OpenMP thread(s) per MPI task 110s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 110s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 110s 2 by 1 by 1 MPI processor grid 110s Created 400 atoms 110s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 110s create_atoms CPU = 0.000 seconds 110s Setting atom values ... 110s 45 settings made for type/fraction 110s Setting atom values ... 110s 355 settings made for mass 110s Setting atom values ... 110s 45 settings made for mass 110s Setting atom values ... 110s 355 settings made for shape 110s Setting atom values ... 110s 45 settings made for shape 110s Setting atom values ... 110s 400 settings made for quat/random 110s 355 atoms in group spheroid 110s 110s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 110s 110s Your simulation uses code contributions which should be cited: 110s - pair gayberne command: doi:10.1063/1.3058435 110s The log file lists these citations in BibTeX format. 110s 110s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 110s 110s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 110s Neighbor list info ... 110s update: every = 1 steps, delay = 0 steps, check = yes 110s max neighbors/atom: 2000, page size: 100000 110s master list distance cutoff = 4.8 110s ghost atom cutoff = 4.8 110s binsize = 2.4, bins = 59 59 3 110s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 110s (1) pair gayberne, perpetual 110s attributes: half, newton on 110s pair build: half/bin/atomonly/newton 110s stencil: half/bin/2d 110s bin: standard 110s Setting up Verlet run ... 110s Unit style : lj 110s Current step : 0 110s Time step : 0.002 110s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 110s Step c_rot E_pair TotEng Press Volume 110s 0 2.2718861 0 2.394 0.04788 20000 110s 100 1.7443419 0 1.8381003 0.035765442 20557.278 110s 200 2.2768798 0 2.3992621 0.046544845 20618.928 110s 300 1.8573086 0 1.9571389 0.04239709 18464.842 110s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 110s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 110s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 110s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 110s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 110s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 110s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 110s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 110s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 110s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 110s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 110s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 110s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 110s 1700 1.9434093 -3.2434441 -1.3043926 0.72465776 1136.9866 110s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 110s 1900 2.0618126 -3.2264372 -1.162807 0.93455597 1155.8306 110s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 110s Loop time of 0.30211 on 2 procs for 2000 steps with 400 atoms 110s 110s Performance: 1143955.586 tau/day, 6620.113 timesteps/s, 2.648 Matom-step/s 110s 99.6% CPU use with 2 MPI tasks x 1 OpenMP threads 110s 110s MPI task timing breakdown: 110s Section | min time | avg time | max time |%varavg| %total 110s --------------------------------------------------------------- 110s Pair | 0.18754 | 0.19929 | 0.21103 | 2.6 | 65.97 110s Neigh | 0.0063964 | 0.0064638 | 0.0065313 | 0.1 | 2.14 110s Comm | 0.010798 | 0.022487 | 0.034175 | 7.8 | 7.44 110s Output | 0.0069352 | 0.0070003 | 0.0070654 | 0.1 | 2.32 110s Modify | 0.063801 | 0.064116 | 0.06443 | 0.1 | 21.22 110s Other | | 0.002756 | | | 0.91 110s 110s Nlocal: 200 ave 204 max 196 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s Nghost: 198.5 ave 200 max 197 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s Neighs: 1510.5 ave 1546 max 1475 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s 110s Total # of neighbors = 3021 110s Ave neighs/atom = 7.5525 110s Neighbor list builds = 351 110s Dangerous builds = 0 110s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 110s Setting up Verlet run ... 110s Unit style : lj 110s Current step : 2000 110s Time step : 0.002 110s Per MPI rank memory allocation (min/avg/max) = 6.898 | 6.898 | 6.898 Mbytes 110s Step c_rot E_pair TotEng Press Volume 110s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 110s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 110s 2200 1.9098636 -3.4103342 -1.5286928 0.58806421 1125.7713 110s 2300 1.9069019 -3.4099452 -1.610028 0.63472536 1125.7713 110s 2400 1.9773105 -3.4856993 -1.5268536 0.68904913 1125.7713 110s 2500 2.0027582 -3.5144592 -1.4900205 0.59925284 1125.7713 110s 2600 1.9616624 -3.4744356 -1.5230915 0.26873751 1125.7713 110s 2700 1.8601147 -3.3625731 -1.487211 0.68399849 1125.7713 110s 2800 1.8194349 -3.3190942 -1.5148089 0.6253534 1125.7713 110s 2900 1.8465285 -3.3451867 -1.5508324 0.60146161 1125.7713 110s 3000 1.8894697 -3.3918161 -1.5180286 0.6121204 1125.7713 110s 3100 1.8667782 -3.3664981 -1.5276073 0.54220867 1125.7713 110s 3200 1.8235755 -3.3205753 -1.5178132 0.82786428 1125.7713 110s 3300 1.7937373 -3.2889154 -1.4975068 0.57067419 1125.7713 110s 3400 1.828955 -3.3291496 -1.5067653 1.0360542 1125.7713 110s 3500 1.8536352 -3.3525756 -1.5177124 0.56578139 1125.7713 110s 3600 1.7698175 -3.2647143 -1.5345765 0.50355355 1125.7713 110s 3700 1.7690567 -3.2653073 -1.4812992 0.7916524 1125.7713 110s 3800 1.8637674 -3.3670314 -1.5049293 0.58377083 1125.7713 110s 3900 1.9053975 -3.4123772 -1.4973185 0.64862786 1125.7713 110s 4000 1.878375 -3.3835516 -1.5382418 0.73838477 1125.7713 110s Loop time of 0.317977 on 2 procs for 2000 steps with 400 atoms 110s 110s Performance: 1086871.789 tau/day, 6289.767 timesteps/s, 2.516 Matom-step/s 110s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 110s 110s MPI task timing breakdown: 110s Section | min time | avg time | max time |%varavg| %total 110s --------------------------------------------------------------- 110s Pair | 0.23967 | 0.24889 | 0.2581 | 1.8 | 78.27 110s Neigh | 0.0021775 | 0.0021996 | 0.0022218 | 0.0 | 0.69 110s Comm | 0.011749 | 0.0209 | 0.030052 | 6.3 | 6.57 110s Output | 0.0069268 | 0.0070037 | 0.0070807 | 0.1 | 2.20 110s Modify | 0.03463 | 0.035704 | 0.036779 | 0.6 | 11.23 110s Other | | 0.003284 | | | 1.03 110s 110s Nlocal: 200 ave 203 max 197 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s Nghost: 207.5 ave 228 max 187 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s Neighs: 1548.5 ave 1608 max 1489 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s 110s Total # of neighbors = 3097 110s Ave neighs/atom = 7.7425 110s Neighbor list builds = 45 110s Dangerous builds = 0 110s Total wall time: 0:00:00 111s LAMMPS (4 Feb 2025) 111s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 111s using 1 OpenMP thread(s) per MPI task 111s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 111s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 111s 1 by 1 by 1 MPI processor grid 111s Created 400 atoms 111s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 111s create_atoms CPU = 0.000 seconds 111s Setting atom values ... 111s 45 settings made for type/fraction 111s Setting atom values ... 111s 355 settings made for mass 111s Setting atom values ... 111s 45 settings made for mass 111s Setting atom values ... 111s 355 settings made for shape 111s Setting atom values ... 111s 45 settings made for shape 111s Setting atom values ... 111s 400 settings made for quat/random 111s 355 atoms in group spheroid 111s 111s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 111s 111s Your simulation uses code contributions which should be cited: 111s - pair gayberne command: doi:10.1063/1.3058435 111s The log file lists these citations in BibTeX format. 111s 111s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 111s 111s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 111s Neighbor list info ... 111s update: every = 1 steps, delay = 0 steps, check = yes 111s max neighbors/atom: 2000, page size: 100000 111s master list distance cutoff = 4.8 111s ghost atom cutoff = 4.8 111s binsize = 2.4, bins = 59 59 3 111s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 111s (1) pair gayberne, perpetual 111s attributes: half, newton on 111s pair build: half/bin/atomonly/newton 111s stencil: half/bin/2d 111s bin: standard 111s Setting up Verlet run ... 111s Unit style : lj 111s Current step : 0 111s Time step : 0.002 111s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 111s Step c_rot E_pair TotEng Press Volume 111s 0 2.2718861 0 2.394 0.04788 20000 111s 100 1.7443419 0 1.8381003 0.035765442 20557.278 111s 200 2.2768798 0 2.3992621 0.046544845 20618.928 111s 300 1.8573086 0 1.9571389 0.04239709 18464.842 111s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 111s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 111s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 111s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 111s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 111s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 111s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 111s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 111s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 111s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 111s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 111s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 111s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 111s 1700 1.9434093 -3.2434441 -1.3043926 0.72465775 1136.9866 111s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 111s 1900 2.0618126 -3.2264372 -1.162807 0.93455596 1155.8306 111s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 111s Loop time of 0.552672 on 1 procs for 2000 steps with 400 atoms 111s 111s Performance: 625325.590 tau/day, 3618.782 timesteps/s, 1.448 Matom-step/s 111s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 111s 111s MPI task timing breakdown: 111s Section | min time | avg time | max time |%varavg| %total 111s --------------------------------------------------------------- 111s Pair | 0.40071 | 0.40071 | 0.40071 | 0.0 | 72.50 112s Neigh | 0.012971 | 0.012971 | 0.012971 | 0.0 | 2.35 112s Comm | 0.0059585 | 0.0059585 | 0.0059585 | 0.0 | 1.08 112s Output | 0.010078 | 0.010078 | 0.010078 | 0.0 | 1.82 112s Modify | 0.12034 | 0.12034 | 0.12034 | 0.0 | 21.77 112s Other | | 0.002615 | | | 0.47 112s 112s Nlocal: 400 ave 400 max 400 min 112s Histogram: 1 0 0 0 0 0 0 0 0 0 112s Nghost: 247 ave 247 max 247 min 112s Histogram: 1 0 0 0 0 0 0 0 0 0 112s Neighs: 3021 ave 3021 max 3021 min 112s Histogram: 1 0 0 0 0 0 0 0 0 0 112s 112s Total # of neighbors = 3021 112s Ave neighs/atom = 7.5525 112s Neighbor list builds = 351 112s Dangerous builds = 0 112s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 112s Setting up Verlet run ... 112s Unit style : lj 112s Current step : 2000 112s Time step : 0.002 112s Per MPI rank memory allocation (min/avg/max) = 6.939 | 6.939 | 6.939 Mbytes 112s Step c_rot E_pair TotEng Press Volume 112s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 112s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 112s 2200 1.9098635 -3.4103342 -1.5286928 0.58806422 1125.7713 112s 2300 1.9069019 -3.4099452 -1.610028 0.63472566 1125.7713 112s 2400 1.9773106 -3.4856993 -1.5268537 0.6890488 1125.7713 112s 2500 2.0027577 -3.5144587 -1.4900206 0.59925482 1125.7713 112s 2600 1.9616627 -3.4744359 -1.5230914 0.26873643 1125.7713 112s 2700 1.8601143 -3.3625727 -1.4872111 0.68399923 1125.7713 112s 2800 1.8194315 -3.3190907 -1.5148099 0.62535541 1125.7713 112s 2900 1.8465014 -3.3451581 -1.5508257 0.60156027 1125.7713 112s 3000 1.8894895 -3.391836 -1.5180354 0.61205823 1125.7713 112s 3100 1.8668465 -3.3665673 -1.5276094 0.54215927 1125.7713 112s 3200 1.8233438 -3.3203287 -1.5178269 0.82854887 1125.7713 112s 3300 1.794649 -3.2898698 -1.4973919 0.56704285 1125.7713 112s 3400 1.8290008 -3.3295346 -1.5070098 1.0356016 1125.7713 112s 3500 1.8535551 -3.3522046 -1.5121703 0.5801663 1125.7713 112s 3600 1.7849961 -3.2815422 -1.5326244 0.45764466 1125.7713 112s 3700 1.7695363 -3.2652329 -1.4772023 0.84882871 1125.7713 112s 3800 1.8713051 -3.3743092 -1.5234548 0.38004095 1125.7713 112s 3900 1.9336013 -3.4411866 -1.4980326 0.64679675 1125.7713 112s 4000 1.9271117 -3.4346745 -1.5345035 0.4492419 1125.7713 112s Loop time of 0.609072 on 1 procs for 2000 steps with 400 atoms 112s 112s Performance: 567420.487 tau/day, 3283.683 timesteps/s, 1.313 Matom-step/s 112s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 112s 112s MPI task timing breakdown: 112s Section | min time | avg time | max time |%varavg| %total 112s --------------------------------------------------------------- 112s Pair | 0.51308 | 0.51308 | 0.51308 | 0.0 | 84.24 112s Neigh | 0.0046654 | 0.0046654 | 0.0046654 | 0.0 | 0.77 112s Comm | 0.0057976 | 0.0057976 | 0.0057976 | 0.0 | 0.95 112s Output | 0.011059 | 0.011059 | 0.011059 | 0.0 | 1.82 112s Modify | 0.07209 | 0.07209 | 0.07209 | 0.0 | 11.84 112s Other | | 0.00238 | | | 0.39 112s 112s Nlocal: 400 ave 400 max 400 min 112s Histogram: 1 0 0 0 0 0 0 0 0 0 112s Nghost: 242 ave 242 max 242 min 112s Histogram: 1 0 0 0 0 0 0 0 0 0 112s Neighs: 3080 ave 3080 max 3080 min 112s Histogram: 1 0 0 0 0 0 0 0 0 0 112s 112s Total # of neighbors = 3080 112s Ave neighs/atom = 7.7 112s Neighbor list builds = 45 112s Dangerous builds = 0 112s Total wall time: 0:00:01 112s LAMMPS (4 Feb 2025) 112s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 112s using 1 OpenMP thread(s) per MPI task 112s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 112s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 112s 2 by 1 by 1 MPI processor grid 112s Created 400 atoms 112s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 112s create_atoms CPU = 0.000 seconds 112s Setting atom values ... 112s 45 settings made for type/fraction 112s Setting atom values ... 112s 355 settings made for mass 112s Setting atom values ... 112s 45 settings made for mass 112s Setting atom values ... 112s 355 settings made for shape 112s Setting atom values ... 112s 45 settings made for shape 112s Setting atom values ... 112s 400 settings made for quat/random 112s 355 atoms in group spheroid 112s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 112s Neighbor list info ... 112s update: every = 1 steps, delay = 0 steps, check = yes 112s max neighbors/atom: 2000, page size: 100000 112s master list distance cutoff = 4.8 112s ghost atom cutoff = 4.8 112s binsize = 2.4, bins = 59 59 3 112s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 112s (1) pair resquared, perpetual 112s attributes: half, newton on 112s pair build: half/bin/atomonly/newton 112s stencil: half/bin/2d 112s bin: standard 112s Setting up Verlet run ... 112s Unit style : lj 112s Current step : 0 112s Time step : 0.002 112s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 112s Step c_rot E_pair TotEng Press Volume 112s 0 2.2718861 0 2.394 0.04788 20000 112s 100 1.7443419 0 1.8381003 0.035765442 20557.278 112s 200 2.2768798 0 2.3992621 0.046544845 20618.928 112s 300 1.8573086 0 1.9571389 0.04239709 18464.842 112s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 112s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 112s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 112s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 112s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 112s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 112s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 112s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 112s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 112s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 112s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 112s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 112s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 112s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 112s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 112s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 112s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 112s Loop time of 0.475781 on 2 procs for 2000 steps with 400 atoms 112s 112s Performance: 726385.291 tau/day, 4203.619 timesteps/s, 1.681 Matom-step/s 112s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 112s 112s MPI task timing breakdown: 112s Section | min time | avg time | max time |%varavg| %total 112s --------------------------------------------------------------- 112s Pair | 0.35242 | 0.35503 | 0.35764 | 0.4 | 74.62 112s Neigh | 0.0064585 | 0.0066061 | 0.0067537 | 0.2 | 1.39 112s Comm | 0.029441 | 0.03224 | 0.035039 | 1.6 | 6.78 112s Output | 0.009274 | 0.0093511 | 0.0094282 | 0.1 | 1.97 112s Modify | 0.067538 | 0.06786 | 0.068183 | 0.1 | 14.26 112s Other | | 0.004693 | | | 0.99 112s 112s Nlocal: 200 ave 206 max 194 min 112s Histogram: 1 0 0 0 0 0 0 0 0 1 112s Nghost: 168.5 ave 169 max 168 min 112s Histogram: 1 0 0 0 0 0 0 0 0 1 112s Neighs: 941 ave 998 max 884 min 112s Histogram: 1 0 0 0 0 0 0 0 0 1 112s 112s Total # of neighbors = 1882 112s Ave neighs/atom = 4.705 112s Neighbor list builds = 415 112s Dangerous builds = 0 112s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 112s Setting up Verlet run ... 112s Unit style : lj 112s Current step : 2000 112s Time step : 0.002 112s Per MPI rank memory allocation (min/avg/max) = 6.889 | 6.889 | 6.889 Mbytes 112s Step c_rot E_pair TotEng Press Volume 112s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 112s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 113s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 113s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 113s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 113s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 113s 2600 1.9587508 0.18695271 2.1506896 1.3513902 1669.0751 113s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 113s 2800 1.9870267 0.15716585 2.1207709 1.2045104 1669.0751 113s 2900 1.9230662 0.224487 2.1353571 1.4964288 1669.0751 113s 3000 2.0042113 0.13903203 2.1149787 1.2100649 1669.0751 113s 3100 1.9543695 0.19149462 2.0984705 1.3409712 1669.0751 113s 3200 1.9991114 0.14441986 2.1292354 1.1756472 1669.0751 113s 3300 1.9629782 0.18246612 2.1463675 1.3162684 1669.0751 113s 3400 1.9403529 0.20630278 2.168704 1.4952817 1669.0751 113s 3500 1.9887414 0.15531284 2.1485278 1.2530438 1669.0751 113s 3600 1.9732705 0.17171749 2.1755758 1.2958612 1669.0751 113s 3700 2.0072859 0.13576438 2.1212392 1.1421261 1669.0751 113s 3800 1.9581319 0.18762046 2.1743395 1.371088 1669.0751 113s 3900 1.9761472 0.16864775 2.1429629 1.3037468 1669.0751 113s 4000 1.9615776 0.18391221 2.1244703 1.4180052 1669.0751 113s Loop time of 0.741841 on 2 procs for 2000 steps with 400 atoms 113s 113s Performance: 465867.778 tau/day, 2695.994 timesteps/s, 1.078 Matom-step/s 113s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 113s 113s MPI task timing breakdown: 113s Section | min time | avg time | max time |%varavg| %total 113s --------------------------------------------------------------- 113s Pair | 0.64433 | 0.6446 | 0.64487 | 0.0 | 86.89 113s Neigh | 0.001902 | 0.0019171 | 0.0019321 | 0.0 | 0.26 113s Comm | 0.045532 | 0.045676 | 0.04582 | 0.1 | 6.16 113s Output | 0.0090581 | 0.0090977 | 0.0091372 | 0.0 | 1.23 113s Modify | 0.035493 | 0.036306 | 0.037119 | 0.4 | 4.89 113s Other | | 0.004243 | | | 0.57 113s 113s Nlocal: 200 ave 204 max 196 min 113s Histogram: 1 0 0 0 0 0 0 0 0 1 113s Nghost: 159.5 ave 161 max 158 min 113s Histogram: 1 0 0 0 0 0 0 0 0 1 113s Neighs: 936 ave 1007 max 865 min 113s Histogram: 1 0 0 0 0 0 0 0 0 1 113s 113s Total # of neighbors = 1872 113s Ave neighs/atom = 4.68 113s Neighbor list builds = 50 113s Dangerous builds = 0 113s Total wall time: 0:00:01 113s LAMMPS (4 Feb 2025) 114s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 114s using 1 OpenMP thread(s) per MPI task 114s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 114s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 114s 1 by 1 by 1 MPI processor grid 114s Created 400 atoms 114s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 114s create_atoms CPU = 0.000 seconds 114s Setting atom values ... 114s 45 settings made for type/fraction 114s Setting atom values ... 114s 355 settings made for mass 114s Setting atom values ... 114s 45 settings made for mass 114s Setting atom values ... 114s 355 settings made for shape 114s Setting atom values ... 114s 45 settings made for shape 114s Setting atom values ... 114s 400 settings made for quat/random 114s 355 atoms in group spheroid 114s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 114s Neighbor list info ... 114s update: every = 1 steps, delay = 0 steps, check = yes 114s max neighbors/atom: 2000, page size: 100000 114s master list distance cutoff = 4.8 114s ghost atom cutoff = 4.8 114s binsize = 2.4, bins = 59 59 3 114s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 114s (1) pair resquared, perpetual 114s attributes: half, newton on 114s pair build: half/bin/atomonly/newton 114s stencil: half/bin/2d 114s bin: standard 114s Setting up Verlet run ... 114s Unit style : lj 114s Current step : 0 114s Time step : 0.002 114s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 114s Step c_rot E_pair TotEng Press Volume 114s 0 2.2718861 0 2.394 0.04788 20000 114s 100 1.7443419 0 1.8381003 0.035765442 20557.278 114s 200 2.2768798 0 2.3992621 0.046544845 20618.928 114s 300 1.8573086 0 1.9571389 0.04239709 18464.842 114s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 114s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 114s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 114s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 114s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 114s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 114s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 114s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 114s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 114s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 114s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 114s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 114s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 114s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 114s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 114s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 114s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 114s Loop time of 0.814127 on 1 procs for 2000 steps with 400 atoms 114s 114s Performance: 424503.549 tau/day, 2456.618 timesteps/s, 982.647 katom-step/s 114s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 114s 114s MPI task timing breakdown: 114s Section | min time | avg time | max time |%varavg| %total 114s --------------------------------------------------------------- 114s Pair | 0.66405 | 0.66405 | 0.66405 | 0.0 | 81.57 114s Neigh | 0.011668 | 0.011668 | 0.011668 | 0.0 | 1.43 114s Comm | 0.0048639 | 0.0048639 | 0.0048639 | 0.0 | 0.60 114s Output | 0.010183 | 0.010183 | 0.010183 | 0.0 | 1.25 114s Modify | 0.12067 | 0.12067 | 0.12067 | 0.0 | 14.82 116s Other | | 0.002689 | | | 0.33 116s 116s Nlocal: 400 ave 400 max 400 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Nghost: 212 ave 212 max 212 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Neighs: 1882 ave 1882 max 1882 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s 116s Total # of neighbors = 1882 116s Ave neighs/atom = 4.705 116s Neighbor list builds = 415 116s Dangerous builds = 0 116s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 116s Setting up Verlet run ... 116s Unit style : lj 116s Current step : 2000 116s Time step : 0.002 116s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 116s Step c_rot E_pair TotEng Press Volume 116s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 116s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 116s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 116s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 116s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 116s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 116s 2600 1.9587508 0.18695272 2.1506896 1.3513902 1669.0751 116s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 116s 2800 1.9870267 0.15716584 2.1207709 1.2045103 1669.0751 116s 2900 1.9230661 0.22448715 2.1353571 1.4964295 1669.0751 116s 3000 2.0042113 0.13903205 2.1149788 1.2100651 1669.0751 116s 3100 1.9543696 0.19149451 2.0984704 1.3409708 1669.0751 116s 3200 1.9991114 0.14441986 2.1292353 1.1756471 1669.0751 116s 3300 1.9629782 0.18246604 2.1463674 1.3162682 1669.0751 116s 3400 1.9403526 0.2063031 2.1687041 1.4952828 1669.0751 116s 3500 1.9887417 0.15531257 2.1485281 1.2530419 1669.0751 116s 3600 1.9732713 0.17171668 2.1755748 1.2958589 1669.0751 116s 3700 2.0072841 0.13576627 2.1212376 1.1421332 1669.0751 116s 3800 1.9581293 0.18762314 2.1743434 1.3710999 1669.0751 116s 3900 1.9761567 0.16863762 2.1429558 1.303685 1669.0751 116s 4000 1.9615813 0.18390829 2.1244694 1.4179775 1669.0751 116s Loop time of 1.36088 on 1 procs for 2000 steps with 400 atoms 116s 116s Performance: 253953.785 tau/day, 1469.640 timesteps/s, 587.856 katom-step/s 116s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 116s 116s MPI task timing breakdown: 116s Section | min time | avg time | max time |%varavg| %total 116s --------------------------------------------------------------- 116s Pair | 1.2675 | 1.2675 | 1.2675 | 0.0 | 93.14 116s Neigh | 0.003632 | 0.003632 | 0.003632 | 0.0 | 0.27 116s Comm | 0.0054698 | 0.0054698 | 0.0054698 | 0.0 | 0.40 116s Output | 0.011079 | 0.011079 | 0.011079 | 0.0 | 0.81 116s Modify | 0.070586 | 0.070586 | 0.070586 | 0.0 | 5.19 116s Other | | 0.002591 | | | 0.19 116s 116s Nlocal: 400 ave 400 max 400 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Nghost: 206 ave 206 max 206 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Neighs: 1872 ave 1872 max 1872 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s 116s Total # of neighbors = 1872 116s Ave neighs/atom = 4.68 116s Neighbor list builds = 50 116s Dangerous builds = 0 116s Total wall time: 0:00:02 116s run: OK 116s autopkgtest [01:03:41]: test ellipse: -----------------------] 116s ellipse PASS 116s autopkgtest [01:03:41]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 117s autopkgtest [01:03:42]: test flow: preparing testbed 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Solving dependencies... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [01:03:43]: test flow: [----------------------- 118s LAMMPS (4 Feb 2025) 118s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 118s using 1 OpenMP thread(s) per MPI task 118s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 118s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 118s 2 by 1 by 1 MPI processor grid 118s Created 420 atoms 118s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 118s create_atoms CPU = 0.000 seconds 118s 60 atoms in group lower 118s 60 atoms in group upper 118s 120 atoms in group boundary 118s 300 atoms in group flow 118s Setting atom values ... 118s 60 settings made for type 118s Setting atom values ... 118s 60 settings made for type 118s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 118s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 118s Neighbor list info ... 118s update: every = 1 steps, delay = 5 steps, check = yes 118s max neighbors/atom: 2000, page size: 100000 118s master list distance cutoff = 1.42246 118s ghost atom cutoff = 1.42246 118s binsize = 0.71123, bins = 37 32 1 118s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 118s (1) pair lj/cut, perpetual 118s attributes: half, newton on 118s pair build: half/bin/atomonly/newton 118s stencil: half/bin/2d 118s bin: standard 118s Setting up Verlet run ... 118s Unit style : lj 118s Current step : 0 118s Time step : 0.003 118s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 118s Step Temp E_pair E_mol TotEng Press Volume 118s 0 1 0 0 0.71190476 0.52314537 571.54286 118s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 118s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 118s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 118s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 118s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 118s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 118s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 118s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 118s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 118s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 118s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 118s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 118s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 118s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 118s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 118s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 118s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 118s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 118s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 118s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 118s Loop time of 0.0847725 on 2 procs for 10000 steps with 420 atoms 118s 118s Performance: 30575944.630 tau/day, 117962.749 timesteps/s, 49.544 Matom-step/s 118s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 118s 118s MPI task timing breakdown: 118s Section | min time | avg time | max time |%varavg| %total 118s --------------------------------------------------------------- 118s Pair | 0.020559 | 0.022461 | 0.024364 | 1.3 | 26.50 118s Neigh | 0.012271 | 0.012274 | 0.012277 | 0.0 | 14.48 118s Comm | 0.021383 | 0.023679 | 0.025976 | 1.5 | 27.93 118s Output | 0.00012783 | 0.00022833 | 0.00032883 | 0.0 | 0.27 118s Modify | 0.017925 | 0.018315 | 0.018706 | 0.3 | 21.61 118s Other | | 0.007815 | | | 9.22 118s 118s Nlocal: 210 ave 213 max 207 min 118s Histogram: 1 0 0 0 0 0 0 0 0 1 118s Nghost: 50.5 ave 51 max 50 min 118s Histogram: 1 0 0 0 0 0 0 0 0 1 118s Neighs: 480.5 ave 492 max 469 min 118s Histogram: 1 0 0 0 0 0 0 0 0 1 118s 118s Total # of neighbors = 961 118s Ave neighs/atom = 2.2880952 118s Neighbor list builds = 964 118s Dangerous builds = 0 118s Total wall time: 0:00:00 118s LAMMPS (4 Feb 2025) 118s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 118s using 1 OpenMP thread(s) per MPI task 118s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 118s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 118s 1 by 1 by 1 MPI processor grid 118s Created 420 atoms 118s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 118s create_atoms CPU = 0.000 seconds 118s 60 atoms in group lower 118s 60 atoms in group upper 118s 120 atoms in group boundary 118s 300 atoms in group flow 118s Setting atom values ... 118s 60 settings made for type 118s Setting atom values ... 118s 60 settings made for type 118s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 118s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 118s Neighbor list info ... 118s update: every = 1 steps, delay = 5 steps, check = yes 118s max neighbors/atom: 2000, page size: 100000 118s master list distance cutoff = 1.42246 118s ghost atom cutoff = 1.42246 118s binsize = 0.71123, bins = 37 32 1 118s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 118s (1) pair lj/cut, perpetual 118s attributes: half, newton on 118s pair build: half/bin/atomonly/newton 118s stencil: half/bin/2d 118s bin: standard 118s Setting up Verlet run ... 118s Unit style : lj 118s Current step : 0 118s Time step : 0.003 118s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 118s Step Temp E_pair E_mol TotEng Press Volume 118s 0 1 0 0 0.71190476 0.52314537 571.54286 118s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 118s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 118s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 118s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 118s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 118s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 118s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 118s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 118s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 118s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 118s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 118s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 118s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 118s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 118s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 118s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 118s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 118s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 118s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 118s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 118s Loop time of 0.119639 on 1 procs for 10000 steps with 420 atoms 118s 118s Performance: 21665130.981 tau/day, 83584.610 timesteps/s, 35.106 Matom-step/s 118s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 118s 118s MPI task timing breakdown: 118s Section | min time | avg time | max time |%varavg| %total 118s --------------------------------------------------------------- 118s Pair | 0.044668 | 0.044668 | 0.044668 | 0.0 | 37.34 118s Neigh | 0.02608 | 0.02608 | 0.02608 | 0.0 | 21.80 118s Comm | 0.0043648 | 0.0043648 | 0.0043648 | 0.0 | 3.65 118s Output | 0.00018014 | 0.00018014 | 0.00018014 | 0.0 | 0.15 118s Modify | 0.035025 | 0.035025 | 0.035025 | 0.0 | 29.28 118s Other | | 0.009321 | | | 7.79 118s 118s Nlocal: 420 ave 420 max 420 min 118s Histogram: 1 0 0 0 0 0 0 0 0 0 118s Nghost: 46 ave 46 max 46 min 118s Histogram: 1 0 0 0 0 0 0 0 0 0 118s Neighs: 952 ave 952 max 952 min 118s Histogram: 1 0 0 0 0 0 0 0 0 0 118s 118s Total # of neighbors = 952 118s Ave neighs/atom = 2.2666667 118s Neighbor list builds = 996 118s Dangerous builds = 0 118s Total wall time: 0:00:00 119s LAMMPS (4 Feb 2025) 119s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 119s using 1 OpenMP thread(s) per MPI task 119s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 119s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 119s 2 by 1 by 1 MPI processor grid 119s Created 420 atoms 119s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 119s create_atoms CPU = 0.000 seconds 119s 60 atoms in group lower 119s 60 atoms in group upper 119s 120 atoms in group boundary 119s 300 atoms in group flow 119s Setting atom values ... 119s 60 settings made for type 119s Setting atom values ... 119s 60 settings made for type 119s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 119s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 119s Neighbor list info ... 119s update: every = 1 steps, delay = 5 steps, check = yes 119s max neighbors/atom: 2000, page size: 100000 119s master list distance cutoff = 1.42246 119s ghost atom cutoff = 1.42246 119s binsize = 0.71123, bins = 37 32 1 119s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 119s (1) pair lj/cut, perpetual 119s attributes: half, newton on 119s pair build: half/bin/atomonly/newton 119s stencil: half/bin/2d 119s bin: standard 119s Setting up Verlet run ... 119s Unit style : lj 119s Current step : 0 119s Time step : 0.003 119s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 119s Step Temp E_pair E_mol TotEng Press Volume 119s 0 1 0 0 0.71190476 0.52314537 571.54286 119s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 119s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 119s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 119s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 119s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 119s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 119s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 119s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 119s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 119s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 119s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 119s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 119s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 119s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 119s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 119s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 119s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 119s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 119s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 119s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 119s Loop time of 0.0945835 on 2 procs for 10000 steps with 420 atoms 119s 119s Performance: 27404349.898 tau/day, 105726.659 timesteps/s, 44.405 Matom-step/s 119s 99.1% CPU use with 2 MPI tasks x 1 OpenMP threads 119s 119s MPI task timing breakdown: 119s Section | min time | avg time | max time |%varavg| %total 119s --------------------------------------------------------------- 119s Pair | 0.022078 | 0.022447 | 0.022815 | 0.2 | 23.73 119s Neigh | 0.0078899 | 0.0079046 | 0.0079194 | 0.0 | 8.36 119s Comm | 0.021462 | 0.02168 | 0.021897 | 0.1 | 22.92 119s Output | 0.00014828 | 0.00030144 | 0.00045461 | 0.0 | 0.32 119s Modify | 0.034286 | 0.034465 | 0.034645 | 0.1 | 36.44 119s Other | | 0.007786 | | | 8.23 119s 119s Nlocal: 210 ave 213 max 207 min 119s Histogram: 1 0 0 0 0 0 0 0 0 1 119s Nghost: 50 ave 51 max 49 min 119s Histogram: 1 0 0 0 0 0 0 0 0 1 119s Neighs: 558.5 ave 573 max 544 min 119s Histogram: 1 0 0 0 0 0 0 0 0 1 119s 119s Total # of neighbors = 1117 119s Ave neighs/atom = 2.6595238 119s Neighbor list builds = 562 119s Dangerous builds = 0 119s Total wall time: 0:00:00 119s LAMMPS (4 Feb 2025) 119s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 119s using 1 OpenMP thread(s) per MPI task 119s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 119s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 119s 1 by 1 by 1 MPI processor grid 119s Created 420 atoms 119s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 119s create_atoms CPU = 0.000 seconds 119s 60 atoms in group lower 119s 60 atoms in group upper 119s 120 atoms in group boundary 119s 300 atoms in group flow 119s Setting atom values ... 119s 60 settings made for type 119s Setting atom values ... 119s 60 settings made for type 119s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 119s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 119s Neighbor list info ... 119s update: every = 1 steps, delay = 5 steps, check = yes 119s max neighbors/atom: 2000, page size: 100000 119s master list distance cutoff = 1.42246 119s ghost atom cutoff = 1.42246 119s binsize = 0.71123, bins = 37 32 1 119s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 119s (1) pair lj/cut, perpetual 119s attributes: half, newton on 119s pair build: half/bin/atomonly/newton 119s stencil: half/bin/2d 119s bin: standard 119s Setting up Verlet run ... 119s Unit style : lj 119s Current step : 0 119s Time step : 0.003 119s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 119s Step Temp E_pair E_mol TotEng Press Volume 119s 0 1 0 0 0.71190476 0.52314537 571.54286 119s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 119s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 119s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 119s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 119s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 119s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 119s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 119s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 119s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 119s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 119s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 119s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 119s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 119s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 119s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 119s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 119s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 119s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 119s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 119s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 119s Loop time of 0.137278 on 1 procs for 10000 steps with 420 atoms 119s 119s Performance: 18881443.062 tau/day, 72845.074 timesteps/s, 30.595 Matom-step/s 119s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 119s 119s MPI task timing breakdown: 119s Section | min time | avg time | max time |%varavg| %total 119s --------------------------------------------------------------- 119s Pair | 0.043475 | 0.043475 | 0.043475 | 0.0 | 31.67 119s Neigh | 0.015236 | 0.015236 | 0.015236 | 0.0 | 11.10 119s Comm | 0.0035558 | 0.0035558 | 0.0035558 | 0.0 | 2.59 119s Output | 0.00012598 | 0.00012598 | 0.00012598 | 0.0 | 0.09 119s Modify | 0.067167 | 0.067167 | 0.067167 | 0.0 | 48.93 119s Other | | 0.007717 | | | 5.62 119s 119s Nlocal: 420 ave 420 max 420 min 119s Histogram: 1 0 0 0 0 0 0 0 0 0 119s Nghost: 48 ave 48 max 48 min 119s Histogram: 1 0 0 0 0 0 0 0 0 0 119s Neighs: 1124 ave 1124 max 1124 min 119s Histogram: 1 0 0 0 0 0 0 0 0 0 119s 119s Total # of neighbors = 1124 119s Ave neighs/atom = 2.6761905 119s Neighbor list builds = 561 119s Dangerous builds = 0 119s Total wall time: 0:00:00 119s run: OK 119s autopkgtest [01:03:44]: test flow: -----------------------] 120s autopkgtest [01:03:45]: test flow: - - - - - - - - - - results - - - - - - - - - - 120s flow PASS 120s autopkgtest [01:03:45]: test friction: preparing testbed 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s autopkgtest [01:03:46]: test friction: [----------------------- 121s LAMMPS (4 Feb 2025) 121s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 121s using 1 OpenMP thread(s) per MPI task 121s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 121s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 121s 2 by 1 by 1 MPI processor grid 121s Created 750 atoms 121s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 121s create_atoms CPU = 0.000 seconds 121s Created 750 atoms 121s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 121s create_atoms CPU = 0.000 seconds 121s Created 112 atoms 121s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 121s create_atoms CPU = 0.000 seconds 121s Created 112 atoms 121s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 121s create_atoms CPU = 0.000 seconds 121s 750 atoms in group lo 121s 862 atoms in group lo 121s 750 atoms in group hi 121s 862 atoms in group hi 121s 150 atoms in group lo-fixed 121s 150 atoms in group hi-fixed 121s 300 atoms in group boundary 121s 1424 atoms in group mobile 121s Setting atom values ... 121s 150 settings made for type 121s Setting atom values ... 121s 150 settings made for type 121s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 121s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 121s Neighbor list info ... 121s update: every = 1 steps, delay = 5 steps, check = yes 121s max neighbors/atom: 2000, page size: 100000 121s master list distance cutoff = 2.8 121s ghost atom cutoff = 2.8 121s binsize = 1.4, bins = 41 31 1 121s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 121s (1) pair lj/cut, perpetual 121s attributes: half, newton on 121s pair build: half/bin/atomonly/newton 121s stencil: half/bin/2d 121s bin: standard 121s Setting up Verlet run ... 121s Unit style : lj 121s Current step : 0 121s Time step : 0.0025 121s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 121s Step Temp E_pair E_mol TotEng Press Volume 121s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 121s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 121s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 121s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 121s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 122s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 122s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 122s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 122s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 122s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 122s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 122s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 122s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 122s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 122s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 122s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 122s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 122s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 122s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 122s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 122s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 122s Loop time of 1.14807 on 2 procs for 20000 steps with 1724 atoms 122s 122s Performance: 3762850.618 tau/day, 17420.605 timesteps/s, 30.033 Matom-step/s 122s 99.8% CPU use with 2 MPI tasks x 1 OpenMP threads 122s 122s MPI task timing breakdown: 122s Section | min time | avg time | max time |%varavg| %total 122s --------------------------------------------------------------- 122s Pair | 0.73326 | 0.77948 | 0.8257 | 5.2 | 67.89 122s Neigh | 0.063164 | 0.069738 | 0.076313 | 2.5 | 6.07 122s Comm | 0.071722 | 0.12574 | 0.17976 | 15.2 | 10.95 122s Output | 0.00032167 | 0.00059938 | 0.00087709 | 0.0 | 0.05 122s Modify | 0.12257 | 0.12904 | 0.13551 | 1.8 | 11.24 122s Other | | 0.04347 | | | 3.79 122s 122s Nlocal: 862 ave 868 max 856 min 122s Histogram: 1 0 0 0 0 0 0 0 0 1 122s Nghost: 160.5 ave 161 max 160 min 122s Histogram: 1 0 0 0 0 0 0 0 0 1 122s Neighs: 7178.5 ave 7223 max 7134 min 122s Histogram: 1 0 0 0 0 0 0 0 0 1 122s 122s Total # of neighbors = 14357 122s Ave neighs/atom = 8.3277262 122s Neighbor list builds = 716 122s Dangerous builds = 0 122s Total wall time: 0:00:01 123s LAMMPS (4 Feb 2025) 124s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 124s using 1 OpenMP thread(s) per MPI task 124s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 124s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 124s 1 by 1 by 1 MPI processor grid 124s Created 750 atoms 124s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 124s create_atoms CPU = 0.000 seconds 124s Created 750 atoms 124s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 124s create_atoms CPU = 0.000 seconds 124s Created 112 atoms 124s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 124s create_atoms CPU = 0.000 seconds 124s Created 112 atoms 124s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 124s create_atoms CPU = 0.000 seconds 124s 750 atoms in group lo 124s 862 atoms in group lo 124s 750 atoms in group hi 124s 862 atoms in group hi 124s 150 atoms in group lo-fixed 124s 150 atoms in group hi-fixed 124s 300 atoms in group boundary 124s 1424 atoms in group mobile 124s Setting atom values ... 124s 150 settings made for type 124s Setting atom values ... 124s 150 settings made for type 124s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 124s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 124s Neighbor list info ... 124s update: every = 1 steps, delay = 5 steps, check = yes 124s max neighbors/atom: 2000, page size: 100000 124s master list distance cutoff = 2.8 124s ghost atom cutoff = 2.8 124s binsize = 1.4, bins = 41 31 1 124s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 124s (1) pair lj/cut, perpetual 124s attributes: half, newton on 124s pair build: half/bin/atomonly/newton 124s stencil: half/bin/2d 124s bin: standard 124s Setting up Verlet run ... 124s Unit style : lj 124s Current step : 0 124s Time step : 0.0025 124s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 124s Step Temp E_pair E_mol TotEng Press Volume 124s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 124s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 124s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 124s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 124s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 124s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 124s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 124s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 124s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 124s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 124s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 124s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 124s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 124s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 124s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 124s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 124s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 124s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 124s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 125s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 125s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 125s Loop time of 2.0003 on 1 procs for 20000 steps with 1724 atoms 125s 125s Performance: 2159674.099 tau/day, 9998.491 timesteps/s, 17.237 Matom-step/s 125s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 125s 125s MPI task timing breakdown: 125s Section | min time | avg time | max time |%varavg| %total 125s --------------------------------------------------------------- 125s Pair | 1.5564 | 1.5564 | 1.5564 | 0.0 | 77.81 125s Neigh | 0.12463 | 0.12463 | 0.12463 | 0.0 | 6.23 125s Comm | 0.015803 | 0.015803 | 0.015803 | 0.0 | 0.79 125s Output | 0.00044437 | 0.00044437 | 0.00044437 | 0.0 | 0.02 125s Modify | 0.254 | 0.254 | 0.254 | 0.0 | 12.70 125s Other | | 0.04898 | | | 2.45 125s 125s Nlocal: 1724 ave 1724 max 1724 min 125s Histogram: 1 0 0 0 0 0 0 0 0 0 125s Nghost: 144 ave 144 max 144 min 125s Histogram: 1 0 0 0 0 0 0 0 0 0 125s Neighs: 14364 ave 14364 max 14364 min 125s Histogram: 1 0 0 0 0 0 0 0 0 0 125s 125s Total # of neighbors = 14364 125s Ave neighs/atom = 8.3317865 125s Neighbor list builds = 714 125s Dangerous builds = 0 125s Total wall time: 0:00:02 125s run: OK 125s autopkgtest [01:03:50]: test friction: -----------------------] 125s friction PASS 125s autopkgtest [01:03:50]: test friction: - - - - - - - - - - results - - - - - - - - - - 125s autopkgtest [01:03:50]: test hugo: preparing testbed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Solving dependencies... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [01:03:51]: test hugo: [----------------------- 127s LAMMPS (4 Feb 2025) 127s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 127s using 1 OpenMP thread(s) per MPI task 127s Lattice spacing in x,y,z = 1.4142135 2 2 127s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 127s 1 by 1 by 2 MPI processor grid 127s Created 1000 atoms 127s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 127s create_atoms CPU = 0.000 seconds 127s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 127s Neighbor list info ... 127s update: every = 1 steps, delay = 0 steps, check = yes 127s max neighbors/atom: 2000, page size: 100000 127s master list distance cutoff = 1.8475372 127s ghost atom cutoff = 1.8475372 127s binsize = 0.92376862, bins = 8 11 11 127s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 127s (1) pair lj/cubic, perpetual 127s attributes: half, newton on 127s pair build: half/bin/atomonly/newton 127s stencil: half/bin/3d 127s bin: standard 127s Setting up cg style minimization ... 127s Unit style : lj 127s Current step : 0 127s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 127s (src/min.cpp:219) 127s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 127s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 127s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 127s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 127s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 127s Loop time of 0.0176333 on 2 procs for 134 steps with 1000 atoms 127s 127s 84.1% CPU use with 2 MPI tasks x 1 OpenMP threads 127s 127s Minimization stats: 127s Stopping criterion = force tolerance 127s Energy initial, next-to-last, final = 127s -6.29375358358574 -6.33442531515467 -6.33442531515467 127s Force two-norm initial, final = 3395.2895 5.5900884e-10 127s Force max component initial, final = 1960.2713 3.2516979e-10 127s Final line search alpha, max atom move = 1 3.2516979e-10 127s Iterations, force evaluations = 134 137 127s 127s MPI task timing breakdown: 127s Section | min time | avg time | max time |%varavg| %total 127s --------------------------------------------------------------- 127s Pair | 0.010328 | 0.01089 | 0.011453 | 0.5 | 61.76 127s Neigh | 0.00027747 | 0.00030568 | 0.00033389 | 0.0 | 1.73 127s Comm | 0.0020516 | 0.0026164 | 0.0031812 | 1.1 | 14.84 127s Output | 1.1047e-05 | 1.7111e-05 | 2.3175e-05 | 0.0 | 0.10 127s Modify | 0 | 0 | 0 | 0.0 | 0.00 127s Other | | 0.003804 | | | 21.57 127s 127s Nlocal: 500 ave 550 max 450 min 127s Histogram: 1 0 0 0 0 0 0 0 0 1 127s Nghost: 1214 ave 1264 max 1164 min 127s Histogram: 1 0 0 0 0 0 0 0 0 1 127s Neighs: 10500 ave 11550 max 9450 min 127s Histogram: 1 0 0 0 0 0 0 0 0 1 127s 127s Total # of neighbors = 21000 127s Ave neighs/atom = 21 127s Neighbor list builds = 1 127s Dangerous builds = 0 127s System init for write_restart ... 127s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 127s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 127s using 1 OpenMP thread(s) per MPI task 127s Reading restart file ... 127s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 127s restoring atom style atomic from restart 127s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 127s 1 by 1 by 2 MPI processor grid 127s restoring pair style lj/cubic from restart 127s 1000 atoms 127s read_restart CPU = 0.000 seconds 127s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 127s Neighbor list info ... 127s update: every = 1 steps, delay = 0 steps, check = yes 127s max neighbors/atom: 2000, page size: 100000 127s master list distance cutoff = 1.7475372 127s ghost atom cutoff = 1.7475372 127s binsize = 0.87376862, bins = 8 12 12 127s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 127s (1) pair lj/cubic, perpetual 127s attributes: half, newton on 127s pair build: half/bin/atomonly/newton 127s stencil: half/bin/3d 127s bin: standard 127s Setting up Verlet run ... 127s Unit style : lj 127s Current step : 0 127s Time step : 0.001 127s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 127s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 127s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 127s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 127s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 127s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 127s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 128s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 128s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 128s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 128s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 128s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 128s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 128s Loop time of 1.33169 on 2 procs for 10000 steps with 1000 atoms 128s 128s Performance: 648798.672 tau/day, 7509.244 timesteps/s, 7.509 Matom-step/s 128s 95.6% CPU use with 2 MPI tasks x 1 OpenMP threads 128s 128s MPI task timing breakdown: 128s Section | min time | avg time | max time |%varavg| %total 128s --------------------------------------------------------------- 128s Pair | 0.85306 | 0.87393 | 0.8948 | 2.2 | 65.63 128s Neigh | 0.067085 | 0.069664 | 0.072243 | 1.0 | 5.23 128s Comm | 0.13076 | 0.15359 | 0.17642 | 5.8 | 11.53 128s Output | 0.00030395 | 0.00042408 | 0.00054421 | 0.0 | 0.03 128s Modify | 0.20926 | 0.21054 | 0.21182 | 0.3 | 15.81 128s Other | | 0.02355 | | | 1.77 128s 128s Nlocal: 500 ave 510 max 490 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s Nghost: 1351.5 ave 1357 max 1346 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s Neighs: 10160.5 ave 10780 max 9541 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s 128s Total # of neighbors = 20321 128s Ave neighs/atom = 20.321 128s Neighbor list builds = 194 128s Dangerous builds = 0 128s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 128s using 1 OpenMP thread(s) per MPI task 128s Reading restart file ... 128s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 128s restoring atom style atomic from restart 128s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 128s 1 by 1 by 2 MPI processor grid 128s restoring pair style lj/cubic from restart 128s 1000 atoms 128s read_restart CPU = 0.000 seconds 128s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 128s Neighbor list info ... 128s update: every = 1 steps, delay = 0 steps, check = yes 128s max neighbors/atom: 2000, page size: 100000 128s master list distance cutoff = 1.7475372 128s ghost atom cutoff = 1.7475372 128s binsize = 0.87376862, bins = 8 12 12 128s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 128s (1) pair lj/cubic, perpetual 128s attributes: half, newton on 128s pair build: half/bin/atomonly/newton 128s stencil: half/bin/3d 128s bin: standard 128s Setting up Verlet run ... 128s Unit style : lj 128s Current step : 0 128s Time step : 0.001 128s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 128s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 128s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 128s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 128s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 129s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 129s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 129s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 129s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 129s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 129s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 129s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 129s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 129s Loop time of 1.20343 on 2 procs for 10000 steps with 1000 atoms 129s 129s Performance: 717945.409 tau/day, 8309.553 timesteps/s, 8.310 Matom-step/s 129s 95.0% CPU use with 2 MPI tasks x 1 OpenMP threads 129s 129s MPI task timing breakdown: 129s Section | min time | avg time | max time |%varavg| %total 129s --------------------------------------------------------------- 129s Pair | 0.79894 | 0.80668 | 0.81442 | 0.9 | 67.03 129s Neigh | 0.0038367 | 0.0038491 | 0.0038614 | 0.0 | 0.32 129s Comm | 0.13857 | 0.14553 | 0.1525 | 1.8 | 12.09 129s Output | 0.00033233 | 0.00049208 | 0.00065184 | 0.0 | 0.04 129s Modify | 0.22082 | 0.22235 | 0.22388 | 0.3 | 18.48 129s Other | | 0.02453 | | | 2.04 129s 129s Nlocal: 500 ave 503 max 497 min 129s Histogram: 1 0 0 0 0 0 0 0 0 1 129s Nghost: 1214 ave 1217 max 1211 min 129s Histogram: 1 0 0 0 0 0 0 0 0 1 129s Neighs: 10500 ave 10560 max 10440 min 129s Histogram: 1 0 0 0 0 0 0 0 0 1 129s 129s Total # of neighbors = 21000 129s Ave neighs/atom = 21 129s Neighbor list builds = 10 129s Dangerous builds = 0 129s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 129s using 1 OpenMP thread(s) per MPI task 129s Reading restart file ... 129s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 129s restoring atom style atomic from restart 129s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 129s 1 by 1 by 2 MPI processor grid 129s restoring pair style lj/cubic from restart 129s 1000 atoms 129s read_restart CPU = 0.000 seconds 129s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 129s Neighbor list info ... 129s update: every = 1 steps, delay = 0 steps, check = yes 129s max neighbors/atom: 2000, page size: 100000 129s master list distance cutoff = 1.7475372 129s ghost atom cutoff = 1.7475372 129s binsize = 0.87376862, bins = 8 12 12 129s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 129s (1) pair lj/cubic, perpetual 129s attributes: half, newton on 129s pair build: half/bin/atomonly/newton 129s stencil: half/bin/3d 129s bin: standard 129s Setting up Verlet run ... 129s Unit style : lj 129s Current step : 0 129s Time step : 0.001 129s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 129s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 129s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 129s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 130s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 130s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 130s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 130s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 130s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 130s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 130s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 130s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 131s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 131s Loop time of 1.17346 on 2 procs for 10000 steps with 1000 atoms 131s 131s Performance: 736281.424 tau/day, 8521.776 timesteps/s, 8.522 Matom-step/s 131s 95.9% CPU use with 2 MPI tasks x 1 OpenMP threads 131s 131s MPI task timing breakdown: 131s Section | min time | avg time | max time |%varavg| %total 131s --------------------------------------------------------------- 131s Pair | 0.78046 | 0.78106 | 0.78166 | 0.1 | 66.56 131s Neigh | 0.033406 | 0.033446 | 0.033486 | 0.0 | 2.85 131s Comm | 0.12346 | 0.12496 | 0.12645 | 0.4 | 10.65 131s Output | 0.00031412 | 0.00064626 | 0.0009784 | 0.0 | 0.06 131s Modify | 0.21159 | 0.21185 | 0.21211 | 0.1 | 18.05 131s Other | | 0.0215 | | | 1.83 131s 131s Nlocal: 500 ave 503 max 497 min 131s Histogram: 1 0 0 0 0 0 0 0 0 1 131s Nghost: 1217.5 ave 1219 max 1216 min 131s Histogram: 1 0 0 0 0 0 0 0 0 1 131s Neighs: 10291 ave 10353 max 10229 min 131s Histogram: 1 0 0 0 0 0 0 0 0 1 131s 131s Total # of neighbors = 20582 131s Ave neighs/atom = 20.582 131s Neighbor list builds = 89 131s Dangerous builds = 0 131s Total wall time: 0:00:03 131s LAMMPS (4 Feb 2025) 131s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 131s using 1 OpenMP thread(s) per MPI task 131s Lattice spacing in x,y,z = 1.4142135 2 2 131s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 131s 1 by 1 by 1 MPI processor grid 131s Created 1000 atoms 131s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 131s create_atoms CPU = 0.000 seconds 131s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 131s Neighbor list info ... 131s update: every = 1 steps, delay = 0 steps, check = yes 131s max neighbors/atom: 2000, page size: 100000 131s master list distance cutoff = 1.8475372 131s ghost atom cutoff = 1.8475372 131s binsize = 0.92376862, bins = 8 11 11 131s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 131s (1) pair lj/cubic, perpetual 131s attributes: half, newton on 131s pair build: half/bin/atomonly/newton 131s stencil: half/bin/3d 131s bin: standard 131s Setting up cg style minimization ... 131s Unit style : lj 131s Current step : 0 131s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 131s (src/min.cpp:219) 131s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 131s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 131s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 131s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 131s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 131s Loop time of 0.032113 on 1 procs for 134 steps with 1000 atoms 131s 131s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 131s 131s Minimization stats: 131s Stopping criterion = force tolerance 131s Energy initial, next-to-last, final = 131s -6.29375358358557 -6.33442531515503 -6.33442531515503 131s Force two-norm initial, final = 3395.2895 5.5740327e-10 131s Force max component initial, final = 1960.2713 3.2730334e-10 131s Final line search alpha, max atom move = 1 3.2730334e-10 131s Iterations, force evaluations = 134 137 131s 131s MPI task timing breakdown: 131s Section | min time | avg time | max time |%varavg| %total 131s --------------------------------------------------------------- 131s Pair | 0.02468 | 0.02468 | 0.02468 | 0.0 | 76.86 131s Neigh | 0.00058952 | 0.00058952 | 0.00058952 | 0.0 | 1.84 131s Comm | 0.00073482 | 0.00073482 | 0.00073482 | 0.0 | 2.29 131s Output | 1.6355e-05 | 1.6355e-05 | 1.6355e-05 | 0.0 | 0.05 131s Modify | 0 | 0 | 0 | 0.0 | 0.00 131s Other | | 0.006092 | | | 18.97 131s 131s Nlocal: 1000 ave 1000 max 1000 min 131s Histogram: 1 0 0 0 0 0 0 0 0 0 131s Nghost: 1724 ave 1724 max 1724 min 131s Histogram: 1 0 0 0 0 0 0 0 0 0 131s Neighs: 21000 ave 21000 max 21000 min 131s Histogram: 1 0 0 0 0 0 0 0 0 0 131s 131s Total # of neighbors = 21000 131s Ave neighs/atom = 21 131s Neighbor list builds = 1 131s Dangerous builds = 0 131s System init for write_restart ... 131s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 131s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 131s using 1 OpenMP thread(s) per MPI task 131s Reading restart file ... 131s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 131s restoring atom style atomic from restart 131s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 131s 1 by 1 by 1 MPI processor grid 131s restoring pair style lj/cubic from restart 131s 1000 atoms 131s read_restart CPU = 0.000 seconds 131s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 131s Neighbor list info ... 131s update: every = 1 steps, delay = 0 steps, check = yes 131s max neighbors/atom: 2000, page size: 100000 131s master list distance cutoff = 1.7475372 131s ghost atom cutoff = 1.7475372 131s binsize = 0.87376862, bins = 8 12 12 131s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 133s (1) pair lj/cubic, perpetual 133s attributes: half, newton on 133s pair build: half/bin/atomonly/newton 133s stencil: half/bin/3d 133s bin: standard 133s Setting up Verlet run ... 133s Unit style : lj 133s Current step : 0 133s Time step : 0.001 133s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 133s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 133s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 133s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 133s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 133s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 133s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 133s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 133s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 133s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 133s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 133s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 133s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 133s Loop time of 2.35021 on 1 procs for 10000 steps with 1000 atoms 133s 133s Performance: 367627.046 tau/day, 4254.943 timesteps/s, 4.255 Matom-step/s 133s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 133s 133s MPI task timing breakdown: 133s Section | min time | avg time | max time |%varavg| %total 133s --------------------------------------------------------------- 133s Pair | 1.788 | 1.788 | 1.788 | 0.0 | 76.08 133s Neigh | 0.13756 | 0.13756 | 0.13756 | 0.0 | 5.85 133s Comm | 0.058036 | 0.058036 | 0.058036 | 0.0 | 2.47 133s Output | 0.00037122 | 0.00037122 | 0.00037122 | 0.0 | 0.02 133s Modify | 0.34563 | 0.34563 | 0.34563 | 0.0 | 14.71 133s Other | | 0.02065 | | | 0.88 133s 133s Nlocal: 1000 ave 1000 max 1000 min 133s Histogram: 1 0 0 0 0 0 0 0 0 0 133s Nghost: 1886 ave 1886 max 1886 min 133s Histogram: 1 0 0 0 0 0 0 0 0 0 133s Neighs: 20874 ave 20874 max 20874 min 133s Histogram: 1 0 0 0 0 0 0 0 0 0 133s 133s Total # of neighbors = 20874 133s Ave neighs/atom = 20.874 133s Neighbor list builds = 188 133s Dangerous builds = 0 133s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 133s using 1 OpenMP thread(s) per MPI task 133s Reading restart file ... 133s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 133s restoring atom style atomic from restart 133s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 133s 1 by 1 by 1 MPI processor grid 133s restoring pair style lj/cubic from restart 133s 1000 atoms 133s read_restart CPU = 0.000 seconds 133s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 133s Neighbor list info ... 135s update: every = 1 steps, delay = 0 steps, check = yes 135s max neighbors/atom: 2000, page size: 100000 135s master list distance cutoff = 1.7475372 135s ghost atom cutoff = 1.7475372 135s binsize = 0.87376862, bins = 8 12 12 135s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 135s (1) pair lj/cubic, perpetual 135s attributes: half, newton on 135s pair build: half/bin/atomonly/newton 135s stencil: half/bin/3d 135s bin: standard 135s Setting up Verlet run ... 135s Unit style : lj 135s Current step : 0 135s Time step : 0.001 135s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 135s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 135s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 135s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 135s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 135s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 135s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 135s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 135s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 135s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 135s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 135s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 135s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 135s Loop time of 2.11671 on 1 procs for 10000 steps with 1000 atoms 135s 135s Performance: 408181.482 tau/day, 4724.323 timesteps/s, 4.724 Matom-step/s 135s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 135s 135s MPI task timing breakdown: 135s Section | min time | avg time | max time |%varavg| %total 135s --------------------------------------------------------------- 135s Pair | 1.6668 | 1.6668 | 1.6668 | 0.0 | 78.75 135s Neigh | 0.0079854 | 0.0079854 | 0.0079854 | 0.0 | 0.38 135s Comm | 0.051685 | 0.051685 | 0.051685 | 0.0 | 2.44 135s Output | 0.00041337 | 0.00041337 | 0.00041337 | 0.0 | 0.02 135s Modify | 0.36855 | 0.36855 | 0.36855 | 0.0 | 17.41 135s Other | | 0.02127 | | | 1.00 135s 135s Nlocal: 1000 ave 1000 max 1000 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s Nghost: 1724 ave 1724 max 1724 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s Neighs: 21000 ave 21000 max 21000 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s 135s Total # of neighbors = 21000 135s Ave neighs/atom = 21 135s Neighbor list builds = 11 135s Dangerous builds = 0 135s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 135s using 1 OpenMP thread(s) per MPI task 135s Reading restart file ... 135s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 135s restoring atom style atomic from restart 137s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 137s 1 by 1 by 1 MPI processor grid 137s restoring pair style lj/cubic from restart 137s 1000 atoms 137s read_restart CPU = 0.000 seconds 137s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 137s Neighbor list info ... 137s update: every = 1 steps, delay = 0 steps, check = yes 137s max neighbors/atom: 2000, page size: 100000 137s master list distance cutoff = 1.7475372 137s ghost atom cutoff = 1.7475372 137s binsize = 0.87376862, bins = 8 12 12 137s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 137s (1) pair lj/cubic, perpetual 137s attributes: half, newton on 137s pair build: half/bin/atomonly/newton 137s stencil: half/bin/3d 137s bin: standard 137s Setting up Verlet run ... 137s Unit style : lj 137s Current step : 0 137s Time step : 0.001 137s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 137s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 137s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 137s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 137s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 137s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 137s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 137s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 137s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 137s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 137s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 137s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 137s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 137s Loop time of 2.07902 on 1 procs for 10000 steps with 1000 atoms 137s 137s Performance: 415580.953 tau/day, 4809.965 timesteps/s, 4.810 Matom-step/s 137s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 137s 137s MPI task timing breakdown: 137s Section | min time | avg time | max time |%varavg| %total 137s --------------------------------------------------------------- 137s Pair | 1.5848 | 1.5848 | 1.5848 | 0.0 | 76.23 137s Neigh | 0.071182 | 0.071182 | 0.071182 | 0.0 | 3.42 137s Comm | 0.050586 | 0.050586 | 0.050586 | 0.0 | 2.43 137s Output | 0.00037928 | 0.00037928 | 0.00037928 | 0.0 | 0.02 137s Modify | 0.35194 | 0.35194 | 0.35194 | 0.0 | 16.93 137s Other | | 0.02014 | | | 0.97 137s 137s Nlocal: 1000 ave 1000 max 1000 min 137s Histogram: 1 0 0 0 0 0 0 0 0 0 137s Nghost: 1724 ave 1724 max 1724 min 137s Histogram: 1 0 0 0 0 0 0 0 0 0 137s Neighs: 20654 ave 20654 max 20654 min 137s Histogram: 1 0 0 0 0 0 0 0 0 0 137s 137s Total # of neighbors = 20654 137s Ave neighs/atom = 20.654 137s Neighbor list builds = 94 137s Dangerous builds = 0 137s Total wall time: 0:00:06 137s run: OK 138s autopkgtest [01:04:03]: test hugo: -----------------------] 138s hugo PASS 138s autopkgtest [01:04:03]: test hugo: - - - - - - - - - - results - - - - - - - - - - 138s autopkgtest [01:04:03]: test command1: preparing testbed 157s Creating nova instance adt-resolute-amd64-lammps-20251019-010145-juju-7f2275-prod-proposed-migration-environment-15-93103f97-a771-4680-9a9d-cc21697a64ba from image adt/ubuntu-resolute-amd64-server-20251018.img (UUID dd697a48-b6cc-4a02-84bf-0f9f2fad5f89)... 182s autopkgtest [01:04:47]: testbed dpkg architecture: amd64 182s autopkgtest [01:04:47]: testbed apt version: 3.1.6ubuntu2 183s autopkgtest [01:04:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 183s autopkgtest [01:04:48]: testbed release detected to be: resolute 183s autopkgtest [01:04:48]: updating testbed package index (apt update) 183s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 184s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 184s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 184s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 184s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [405 kB] 184s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 184s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [17.1 kB] 184s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.0 kB] 184s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [116 kB] 184s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [66.7 kB] 184s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 184s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 184s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [122 kB] 184s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [314 kB] 184s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B] 184s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.5 kB] 184s Fetched 1235 kB in 1s (2148 kB/s) 185s Reading package lists... 185s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 185s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 185s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 185s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 186s Reading package lists... 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 186s Calculating upgrade... 186s The following packages will be upgraded: 186s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 186s libpython3-stdlib python3 python3-minimal 186s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 2751 kB of archives. 186s After this operation, 2048 B of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 186s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 186s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 186s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.8ubuntu1 [1140 kB] 187s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.8ubuntu1 [1438 kB] 187s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-1.0-1 amd64 1.86.0-6 [85.9 kB] 187s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-2.0 amd64 1.86.0-6 [25.3 kB] 187s dpkg-preconfigure: unable to re-open stdin: No such file or directory 187s Fetched 2751 kB in 0s (6102 kB/s) 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 187s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 187s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 187s Setting up python3-minimal (3.13.7-2) ... 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 187s Preparing to unpack .../0-python3_3.13.7-2_amd64.deb ... 187s running python pre-rtupdate hooks for python3.13... 187s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 187s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_amd64.deb ... 187s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 187s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_amd64.deb ... 187s Unpacking libapt-pkg7.0:amd64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 187s Preparing to unpack .../3-apt_3.1.8ubuntu1_amd64.deb ... 187s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 187s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_amd64.deb ... 187s Unpacking libgirepository-1.0-1:amd64 (1.86.0-6) over (1.84.0-1) ... 187s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_amd64.deb ... 187s Unpacking gir1.2-girepository-2.0:amd64 (1.86.0-6) over (1.84.0-1) ... 187s Setting up libgirepository-1.0-1:amd64 (1.86.0-6) ... 187s Setting up libapt-pkg7.0:amd64 (3.1.8ubuntu1) ... 187s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 187s Setting up apt (3.1.8ubuntu1) ... 188s Setting up python3 (3.13.7-2) ... 188s running python rtupdate hooks for python3.13... 188s running python post-rtupdate hooks for python3.13... 188s Setting up gir1.2-girepository-2.0:amd64 (1.86.0-6) ... 188s Processing triggers for man-db (2.13.1-1) ... 189s Processing triggers for libc-bin (2.42-0ubuntu3) ... 189s autopkgtest [01:04:54]: upgrading testbed (apt dist-upgrade and autopurge) 190s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Calculating upgrade... 190s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Solving dependencies... 190s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s autopkgtest [01:04:55]: rebooting testbed after setup commands that affected boot 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Solving dependencies... 208s The following NEW packages will be installed: 208s autoconf automake autotools-dev cpp-15 cpp-15-x86-64-linux-gnu 208s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15 208s gcc-15-x86-64-linux-gnu gfortran-15 gfortran-15-x86-64-linux-gnu libaec0 208s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 208s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libevent-2.1-7t64 208s libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 208s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 208s libfftw3-double3 libfontconfig1 libgbm1 libgcc-15-dev libgfortran-15-dev 208s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 208s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 208s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 208s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 208s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 208s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 208s libmpc3 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 208s libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 208s libpnetcdf6 libproj25 libpsm2-2 libquadmath0 librdmacm1t64 libsharpyuv0 208s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 208s libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 208s libvtk9.3 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 208s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 208s libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 208s libxxf86vm1 libze1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 208s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 208s x11-common zlib1g-dev 208s 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. 208s Need to get 201 MB of archives. 208s After this operation, 795 MB of additional disk space will be used. 208s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 m4 amd64 1.4.19-8 [248 kB] 208s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 autoconf all 2.72-3.1ubuntu1 [384 kB] 208s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 autotools-dev all 20240727.1 [43.4 kB] 208s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 automake all 1:1.17-4ubuntu1 [572 kB] 208s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1 [685 kB] 208s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-1build3 [57.0 kB] 208s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [12.9 MB] 208s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-5ubuntu1 [1028 B] 208s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 208s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 208s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 208s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-5ubuntu1 [47.4 kB] 208s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 208s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-5ubuntu1 [29.3 kB] 208s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-5ubuntu1 [3071 kB] 208s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-5ubuntu1 [1360 kB] 209s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-5ubuntu1 [2757 kB] 209s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-5ubuntu1 [1210 kB] 209s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-5ubuntu1 [1685 kB] 209s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-5ubuntu1 [153 kB] 209s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-5ubuntu1 [2863 kB] 209s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [25.4 MB] 209s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-5ubuntu1 [523 kB] 209s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 209s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-5ubuntu1 [972 kB] 209s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [13.6 MB] 210s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-5ubuntu1 [17.7 kB] 210s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 210s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libllvm17t64 amd64 1:17.0.6-22build1 [25.9 MB] 210s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build3 [14.3 MB] 210s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.125-1 [21.6 kB] 210s Get:32 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsakmt1 amd64 6.2.4+ds-1 [66.8 kB] 210s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsa-runtime64-1 amd64 6.1.2-3 [564 kB] 210s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamdhip64-5 amd64 5.7.1-6 [9698 kB] 210s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 210s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 210s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 210s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 210s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 210s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 210s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 210s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 210s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.3.1-1build1 [42.8 kB] 210s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB] 210s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.125-1 [64.9 kB] 210s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10build1 [155 kB] 210s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build1 [98.8 kB] 210s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10build1 [68.1 kB] 210s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10build1 [8360 B] 210s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10build1 [16.7 kB] 210s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-dev amd64 2.1.12-stable-10build1 [288 kB] 210s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 210s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 librdmacm1t64 amd64 56.1-1ubuntu1 [71.4 kB] 210s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfabric1 amd64 2.1.0-1.1 [697 kB] 210s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build2 [860 kB] 211s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 211s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2build1 [8036 B] 211s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2build1 [6446 B] 211s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2build1 [19.7 kB] 211s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2build1 [10.1 kB] 211s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2build1 [11.1 kB] 211s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 211s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.2.3-1ubuntu1 [11.1 MB] 211s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.2.3-1ubuntu1 [34.0 kB] 211s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.321.0-1 [154 kB] 211s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.2.3-1ubuntu1 [36.9 kB] 211s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-1build2 [65.1 kB] 211s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2build1 [27.6 kB] 211s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 211s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.2.3-1ubuntu1 [110 kB] 211s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-1build2 [40.3 kB] 211s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-1build2 [101 kB] 211s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 211s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 211s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 211s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 211s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 211s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc15 amd64 2.12.2-1 [181 kB] 211s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 211s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 211s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 211s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 211s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 211s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 211s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 211s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 211s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libibumad3 amd64 56.1-1ubuntu1 [31.3 kB] 211s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libibmad5 amd64 56.1-1ubuntu1 [44.0 kB] 211s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libucx0 amd64 1.19.0+ds-1 [1308 kB] 211s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 211s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libze1 amd64 1.24.1-2 [599 kB] 211s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 211s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-plugins amd64 2.12.2-1 [22.2 kB] 211s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi40 amd64 5.0.8-8ubuntu1 [3384 kB] 211s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 211s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 211s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 211s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-1build2 [32.6 kB] 211s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.6.0-1 [7955 kB] 211s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 211s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 211s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 211s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 211s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 211s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.6.0-1 [1475 kB] 211s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.7 kB] 211s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbbmalloc2 amd64 2022.1.0-1 [53.7 kB] 211s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtbb12 amd64 2022.1.0-1 [93.5 kB] 211s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 211s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 211s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 211s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 211s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 211s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 211s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 211s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu2 [25.3 MB] 212s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblammps0t64 amd64 20250204+dfsg.1-2 [7956 kB] 212s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 212s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libnl-3-dev amd64 3.7.0-2build1 [105 kB] 212s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libnl-route-3-dev amd64 3.7.0-2build1 [234 kB] 212s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libibverbs-dev amd64 56.1-1ubuntu1 [686 kB] 212s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libnuma-dev amd64 2.0.19-1 [37.3 kB] 212s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-4build1 [44.4 kB] 212s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl-dev amd64 2.5.4-4build1 [174 kB] 212s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-dev amd64 2.12.2-1 [283 kB] 212s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 212s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 openmpi-bin amd64 5.0.8-8ubuntu1 [201 kB] 212s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi-dev amd64 5.0.8-8ubuntu1 [1226 kB] 212s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 mpi-default-dev amd64 1.18 [3320 B] 212s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblammps-dev amd64 20250204+dfsg.1-2 [114 kB] 212s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 212s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lammps amd64 20250204+dfsg.1-2 [75.4 kB] 212s Fetched 201 MB in 5s (44.5 MB/s) 212s Selecting previously unselected package m4. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 212s Preparing to unpack .../000-m4_1.4.19-8_amd64.deb ... 212s Unpacking m4 (1.4.19-8) ... 212s Selecting previously unselected package autoconf. 212s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ... 212s Unpacking autoconf (2.72-3.1ubuntu1) ... 212s Selecting previously unselected package autotools-dev. 212s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ... 212s Unpacking autotools-dev (20240727.1) ... 212s Selecting previously unselected package automake. 212s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ... 212s Unpacking automake (1:1.17-4ubuntu1) ... 212s Selecting previously unselected package libisl23:amd64. 212s Preparing to unpack .../004-libisl23_0.27-1_amd64.deb ... 212s Unpacking libisl23:amd64 (0.27-1) ... 213s Selecting previously unselected package libmpc3:amd64. 213s Preparing to unpack .../005-libmpc3_1.3.1-1build3_amd64.deb ... 213s Unpacking libmpc3:amd64 (1.3.1-1build3) ... 213s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 213s Preparing to unpack .../006-cpp-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package cpp-15. 213s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package fonts-dejavu-mono. 213s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 213s Unpacking fonts-dejavu-mono (2.37-8) ... 213s Selecting previously unselected package fonts-dejavu-core. 213s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 213s Unpacking fonts-dejavu-core (2.37-8) ... 213s Selecting previously unselected package fontconfig-config. 213s Preparing to unpack .../010-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 213s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 213s Selecting previously unselected package libcc1-0:amd64. 213s Preparing to unpack .../011-libcc1-0_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libcc1-0:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libgomp1:amd64. 213s Preparing to unpack .../012-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libitm1:amd64. 213s Preparing to unpack .../013-libitm1_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libitm1:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libasan8:amd64. 213s Preparing to unpack .../014-libasan8_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libasan8:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package liblsan0:amd64. 213s Preparing to unpack .../015-liblsan0_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking liblsan0:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libtsan2:amd64. 213s Preparing to unpack .../016-libtsan2_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libtsan2:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libubsan1:amd64. 213s Preparing to unpack .../017-libubsan1_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libubsan1:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libhwasan0:amd64. 213s Preparing to unpack .../018-libhwasan0_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libhwasan0:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libquadmath0:amd64. 213s Preparing to unpack .../019-libquadmath0_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libquadmath0:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libgcc-15-dev:amd64. 213s Preparing to unpack .../020-libgcc-15-dev_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libgcc-15-dev:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 213s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package gcc-15. 213s Preparing to unpack .../022-gcc-15_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libgfortran5:amd64. 213s Preparing to unpack .../023-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libgfortran-15-dev:amd64. 213s Preparing to unpack .../024-libgfortran-15-dev_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking libgfortran-15-dev:amd64 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 213s Preparing to unpack .../025-gfortran-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package gfortran-15. 213s Preparing to unpack .../026-gfortran-15_15.2.0-5ubuntu1_amd64.deb ... 213s Unpacking gfortran-15 (15.2.0-5ubuntu1) ... 213s Selecting previously unselected package libaec0:amd64. 213s Preparing to unpack .../027-libaec0_1.1.3-1_amd64.deb ... 213s Unpacking libaec0:amd64 (1.1.3-1) ... 213s Selecting previously unselected package libllvm17t64:amd64. 213s Preparing to unpack .../028-libllvm17t64_1%3a17.0.6-22build1_amd64.deb ... 213s Unpacking libllvm17t64:amd64 (1:17.0.6-22build1) ... 214s Selecting previously unselected package libamd-comgr2:amd64. 214s Preparing to unpack .../029-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_amd64.deb ... 214s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build3) ... 214s Selecting previously unselected package libdrm-amdgpu1:amd64. 214s Preparing to unpack .../030-libdrm-amdgpu1_2.4.125-1_amd64.deb ... 214s Unpacking libdrm-amdgpu1:amd64 (2.4.125-1) ... 214s Selecting previously unselected package libhsakmt1:amd64. 214s Preparing to unpack .../031-libhsakmt1_6.2.4+ds-1_amd64.deb ... 214s Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... 214s Selecting previously unselected package libhsa-runtime64-1:amd64. 214s Preparing to unpack .../032-libhsa-runtime64-1_6.1.2-3_amd64.deb ... 214s Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... 214s Selecting previously unselected package libamdhip64-5:amd64. 214s Preparing to unpack .../033-libamdhip64-5_5.7.1-6_amd64.deb ... 214s Unpacking libamdhip64-5:amd64 (5.7.1-6) ... 214s Selecting previously unselected package libblas3:amd64. 214s Preparing to unpack .../034-libblas3_3.12.1-6build1_amd64.deb ... 214s Unpacking libblas3:amd64 (3.12.1-6build1) ... 214s Selecting previously unselected package libfontconfig1:amd64. 214s Preparing to unpack .../035-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 214s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 214s Selecting previously unselected package libpixman-1-0:amd64. 214s Preparing to unpack .../036-libpixman-1-0_0.44.0-3_amd64.deb ... 214s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 214s Selecting previously unselected package libxcb-render0:amd64. 214s Preparing to unpack .../037-libxcb-render0_1.17.0-2build1_amd64.deb ... 214s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 214s Selecting previously unselected package libxcb-shm0:amd64. 214s Preparing to unpack .../038-libxcb-shm0_1.17.0-2build1_amd64.deb ... 214s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 214s Selecting previously unselected package libxrender1:amd64. 214s Preparing to unpack .../039-libxrender1_1%3a0.9.12-1_amd64.deb ... 214s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 214s Selecting previously unselected package libcairo2:amd64. 214s Preparing to unpack .../040-libcairo2_1.18.4-1build1_amd64.deb ... 214s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 214s Selecting previously unselected package libdeflate0:amd64. 214s Preparing to unpack .../041-libdeflate0_1.23-2_amd64.deb ... 214s Unpacking libdeflate0:amd64 (1.23-2) ... 214s Selecting previously unselected package libdouble-conversion3:amd64. 214s Preparing to unpack .../042-libdouble-conversion3_3.3.1-1build1_amd64.deb ... 214s Unpacking libdouble-conversion3:amd64 (3.3.1-1build1) ... 214s Selecting previously unselected package libpciaccess0:amd64. 214s Preparing to unpack .../043-libpciaccess0_0.18.1-1ubuntu2_amd64.deb ... 214s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu2) ... 214s Selecting previously unselected package libdrm-intel1:amd64. 214s Preparing to unpack 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libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 214s Selecting previously unselected package libevent-openssl-2.1-7t64:amd64. 214s Preparing to unpack .../049-libevent-openssl-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 214s Unpacking libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 214s Selecting previously unselected package libevent-dev. 214s Preparing to unpack .../050-libevent-dev_2.1.12-stable-10build1_amd64.deb ... 214s Unpacking libevent-dev (2.1.12-stable-10build1) ... 214s Selecting previously unselected package libpsm2-2. 214s Preparing to unpack .../051-libpsm2-2_11.2.185-2.1_amd64.deb ... 214s Unpacking libpsm2-2 (11.2.185-2.1) ... 214s Selecting previously unselected package librdmacm1t64:amd64. 214s Preparing to unpack .../052-librdmacm1t64_56.1-1ubuntu1_amd64.deb ... 214s Unpacking librdmacm1t64:amd64 (56.1-1ubuntu1) ... 214s Selecting previously unselected package libfabric1:amd64. 214s Preparing to unpack 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unpack .../058-libxcb-randr0_1.17.0-2build1_amd64.deb ... 214s Unpacking libxcb-randr0:amd64 (1.17.0-2build1) ... 214s Selecting previously unselected package libxcb-sync1:amd64. 214s Preparing to unpack .../059-libxcb-sync1_1.17.0-2build1_amd64.deb ... 214s Unpacking libxcb-sync1:amd64 (1.17.0-2build1) ... 214s Selecting previously unselected package libxcb-xfixes0:amd64. 214s Preparing to unpack .../060-libxcb-xfixes0_1.17.0-2build1_amd64.deb ... 214s Unpacking libxcb-xfixes0:amd64 (1.17.0-2build1) ... 214s Selecting previously unselected package libxshmfence1:amd64. 214s Preparing to unpack .../061-libxshmfence1_1.3.3-1_amd64.deb ... 214s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 214s Selecting previously unselected package mesa-libgallium:amd64. 214s Preparing to unpack .../062-mesa-libgallium_25.2.3-1ubuntu1_amd64.deb ... 214s Unpacking mesa-libgallium:amd64 (25.2.3-1ubuntu1) ... 215s Selecting previously unselected package libgbm1:amd64. 215s Preparing to unpack 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... 215s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 215s Selecting previously unselected package libglx-mesa0:amd64. 215s Preparing to unpack .../069-libglx-mesa0_25.2.3-1ubuntu1_amd64.deb ... 215s Unpacking libglx-mesa0:amd64 (25.2.3-1ubuntu1) ... 215s Selecting previously unselected package libglx0:amd64. 215s Preparing to unpack .../070-libglx0_1.7.0-1build2_amd64.deb ... 215s Unpacking libglx0:amd64 (1.7.0-1build2) ... 215s Selecting previously unselected package libgl1:amd64. 215s Preparing to unpack .../071-libgl1_1.7.0-1build2_amd64.deb ... 215s Unpacking libgl1:amd64 (1.7.0-1build2) ... 215s Selecting previously unselected package libgl2ps1.4. 215s Preparing to unpack .../072-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 215s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 215s Selecting previously unselected package libglew2.2:amd64. 215s Preparing to unpack .../073-libglew2.2_2.2.0-4build1_amd64.deb ... 215s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 215s Selecting previously unselected package libsz2:amd64. 215s Preparing to unpack .../074-libsz2_1.1.3-1_amd64.deb ... 215s Unpacking libsz2:amd64 (1.1.3-1) ... 215s Selecting previously unselected package libhdf5-310:amd64. 215s Preparing to unpack .../075-libhdf5-310_1.14.5+repack-3build1_amd64.deb ... 215s Unpacking libhdf5-310:amd64 (1.14.5+repack-3build1) ... 215s Selecting previously unselected package libhdf5-hl-310:amd64. 215s Preparing to unpack .../076-libhdf5-hl-310_1.14.5+repack-3build1_amd64.deb ... 215s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 215s Selecting previously unselected package libhwloc15:amd64. 215s Preparing to unpack .../077-libhwloc15_2.12.2-1_amd64.deb ... 215s Unpacking libhwloc15:amd64 (2.12.2-1) ... 215s Selecting previously unselected package libjpeg-turbo8:amd64. 215s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 215s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 215s Selecting previously unselected package libjpeg8:amd64. 215s Preparing to unpack .../079-libjpeg8_8c-2ubuntu11_amd64.deb ... 215s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 215s Selecting previously unselected package libjs-jquery. 215s Preparing to unpack .../080-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 215s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 215s Selecting previously unselected package libjs-jquery-ui. 215s Preparing to unpack .../081-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 215s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 215s Selecting previously unselected package libjsoncpp26:amd64. 215s Preparing to unpack .../082-libjsoncpp26_1.9.6-3_amd64.deb ... 215s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 215s Selecting previously unselected package libkim-api2:amd64. 215s Preparing to unpack .../083-libkim-api2_2.3.0-1ubuntu1_amd64.deb ... 215s Unpacking libkim-api2:amd64 (2.3.0-1ubuntu1) ... 215s Selecting previously unselected package liblapack3:amd64. 215s Preparing to unpack .../084-liblapack3_3.12.1-6build1_amd64.deb ... 215s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 215s Selecting previously unselected package libnetcdf22:amd64. 215s Preparing to unpack .../085-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 215s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 215s Selecting previously unselected package libibumad3:amd64. 215s Preparing to unpack .../086-libibumad3_56.1-1ubuntu1_amd64.deb ... 215s Unpacking libibumad3:amd64 (56.1-1ubuntu1) ... 215s Selecting previously unselected package libibmad5:amd64. 215s Preparing to unpack .../087-libibmad5_56.1-1ubuntu1_amd64.deb ... 215s Unpacking libibmad5:amd64 (56.1-1ubuntu1) ... 215s Selecting previously unselected package libucx0:amd64. 215s Preparing to unpack .../088-libucx0_1.19.0+ds-1_amd64.deb ... 215s Unpacking libucx0:amd64 (1.19.0+ds-1) ... 215s Selecting previously unselected package libxnvctrl0:amd64. 215s Preparing to unpack .../089-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 215s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 215s Selecting previously unselected package libze1:amd64. 215s Preparing to unpack .../090-libze1_1.24.1-2_amd64.deb ... 215s Unpacking libze1:amd64 (1.24.1-2) ... 215s Selecting previously unselected package ocl-icd-libopencl1:amd64. 215s Preparing to unpack .../091-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... 215s Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... 215s Selecting previously unselected package libhwloc-plugins:amd64. 215s Preparing to unpack .../092-libhwloc-plugins_2.12.2-1_amd64.deb ... 215s Unpacking libhwloc-plugins:amd64 (2.12.2-1) ... 215s Selecting previously unselected package libopenmpi40:amd64. 215s Preparing to unpack .../093-libopenmpi40_5.0.8-8ubuntu1_amd64.deb ... 215s Unpacking libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 215s Selecting previously unselected package libpnetcdf6:amd64. 215s Preparing to unpack .../094-libpnetcdf6_1.14.0-2_amd64.deb ... 215s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 215s Selecting previously unselected package libvoro++1. 215s Preparing to unpack .../095-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 215s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 215s Selecting previously unselected package libogg0:amd64. 215s Preparing to unpack .../096-libogg0_1.3.5-3build1_amd64.deb ... 215s Unpacking libogg0:amd64 (1.3.5-3build1) ... 215s Selecting previously unselected package libopengl0:amd64. 215s Preparing to unpack .../097-libopengl0_1.7.0-1build2_amd64.deb ... 215s Unpacking libopengl0:amd64 (1.7.0-1build2) ... 215s Selecting previously unselected package proj-data. 215s Preparing to unpack .../098-proj-data_9.6.0-1_all.deb ... 215s Unpacking proj-data (9.6.0-1) ... 215s Selecting previously unselected package libjbig0:amd64. 215s Preparing to unpack .../099-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 215s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 215s Selecting previously unselected package liblerc4:amd64. 215s Preparing to unpack .../100-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 215s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 215s Selecting previously unselected package libsharpyuv0:amd64. 215s Preparing to unpack .../101-libsharpyuv0_1.5.0-0.1_amd64.deb ... 215s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 215s Selecting previously unselected package libwebp7:amd64. 215s Preparing to unpack .../102-libwebp7_1.5.0-0.1_amd64.deb ... 215s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 215s Selecting previously unselected package libtiff6:amd64. 215s Preparing to unpack .../103-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 215s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 215s Selecting previously unselected package libproj25:amd64. 215s Preparing to unpack .../104-libproj25_9.6.0-1_amd64.deb ... 215s Unpacking libproj25:amd64 (9.6.0-1) ... 215s Selecting previously unselected package libtbbbind-2-5:amd64. 215s Preparing to unpack .../105-libtbbbind-2-5_2022.1.0-1_amd64.deb ... 215s Unpacking libtbbbind-2-5:amd64 (2022.1.0-1) ... 215s Selecting previously unselected package libtbbmalloc2:amd64. 215s Preparing to unpack .../106-libtbbmalloc2_2022.1.0-1_amd64.deb ... 215s Unpacking libtbbmalloc2:amd64 (2022.1.0-1) ... 215s Selecting previously unselected package libtbb12:amd64. 215s Preparing to unpack .../107-libtbb12_2022.1.0-1_amd64.deb ... 215s Unpacking libtbb12:amd64 (2022.1.0-1) ... 215s Selecting previously unselected package libtcl8.6:amd64. 215s Preparing to unpack .../108-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 215s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 215s Selecting previously unselected package libtheoradec1:amd64. 215s Preparing to unpack .../109-libtheoradec1_1.2.0~alpha1+dfsg-6_amd64.deb ... 215s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 215s Selecting previously unselected package libtheoraenc1:amd64. 215s Preparing to unpack .../110-libtheoraenc1_1.2.0~alpha1+dfsg-6_amd64.deb ... 215s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 215s Selecting previously unselected package libxft2:amd64. 215s Preparing to unpack .../111-libxft2_2.3.6-1build1_amd64.deb ... 215s Unpacking libxft2:amd64 (2.3.6-1build1) ... 215s Selecting previously unselected package x11-common. 215s Preparing to unpack .../112-x11-common_1%3a7.7+24ubuntu1_all.deb ... 215s Unpacking x11-common (1:7.7+24ubuntu1) ... 215s Selecting previously unselected package libxss1:amd64. 215s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build3_amd64.deb ... 215s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 215s Selecting previously unselected package libtk8.6:amd64. 215s Preparing to unpack .../114-libtk8.6_8.6.17-1_amd64.deb ... 215s Unpacking libtk8.6:amd64 (8.6.17-1) ... 215s Selecting previously unselected package libvtk9.3:amd64. 215s Preparing to unpack .../115-libvtk9.3_9.3.0+dfsg1-4ubuntu2_amd64.deb ... 215s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu2) ... 216s Selecting previously unselected package liblammps0t64:amd64. 216s Preparing to unpack .../116-liblammps0t64_20250204+dfsg.1-2_amd64.deb ... 216s Unpacking liblammps0t64:amd64 (20250204+dfsg.1-2) ... 216s Selecting previously unselected package openmpi-common. 216s Preparing to unpack .../117-openmpi-common_5.0.8-8ubuntu1_all.deb ... 216s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 216s Selecting previously unselected package libnl-3-dev:amd64. 216s Preparing to unpack .../118-libnl-3-dev_3.7.0-2build1_amd64.deb ... 216s Unpacking libnl-3-dev:amd64 (3.7.0-2build1) ... 216s Selecting previously unselected package libnl-route-3-dev:amd64. 216s Preparing to unpack .../119-libnl-route-3-dev_3.7.0-2build1_amd64.deb ... 216s Unpacking libnl-route-3-dev:amd64 (3.7.0-2build1) ... 216s Selecting previously unselected package libibverbs-dev:amd64. 216s Preparing to unpack .../120-libibverbs-dev_56.1-1ubuntu1_amd64.deb ... 216s Unpacking libibverbs-dev:amd64 (56.1-1ubuntu1) ... 216s Selecting previously unselected package libnuma-dev:amd64. 216s Preparing to unpack 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... 217s Setting up libamdhip64-5:amd64 (5.7.1-6) ... 217s Setting up libucx0:amd64 (1.19.0+ds-1) ... 217s Setting up libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 217s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 217s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu2) ... 217s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 217s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 217s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 217s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 217s Setting up mpi-default-bin (1.18) ... 217s Setting up liblammps0t64:amd64 (20250204+dfsg.1-2) ... 217s Setting up libopenmpi-dev:amd64 (5.0.8-8ubuntu1) ... 217s update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode 217s Setting up mpi-default-dev (1.18) ... 217s Setting up liblammps-dev (20250204+dfsg.1-2) ... 217s Setting up python3-lammps (20250204+dfsg.1-2) ... 217s Processing triggers for man-db (2.13.1-1) ... 217s Processing triggers for install-info (7.1.1-1ubuntu1) ... 217s Processing triggers for libc-bin (2.42-0ubuntu3) ... 228s autopkgtest [01:05:33]: test command1: cd python/examples; python3 demo.py 228s autopkgtest [01:05:33]: test command1: [----------------------- 229s LAMMPS (4 Feb 2025) 229s 229s Python output: 229s Natoms, mass, x[0][0] coord = 4000 1.0 16.767988851705528 229s Temperature from compute = 0.7571533403732014 229s Energy from equal-style variable = -5.758142569688168 229s Velocity component from atom-style variable = -1.0131655567386921 229s Volume from get_thermo = 4738.213693437576 229s Natoms from get_natoms = 4000 229s Global coords from gather_atoms = 16.767988851705528 16.621004261651628 0.14158807746974947 229s Changed x[0][0] via scatter_atoms = 17.767988851705528 229s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 229s using 1 OpenMP thread(s) per MPI task 229s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 229s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 229s 1 by 1 by 1 MPI processor grid 229s Created 4000 atoms 229s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 229s create_atoms CPU = 0.001 seconds 229s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 229s Neighbor list info ... 229s update: every = 20 steps, delay = 0 steps, check = no 229s max neighbors/atom: 2000, page size: 100000 229s master list distance cutoff = 2.8 229s ghost atom cutoff = 2.8 229s binsize = 1.4, bins = 12 12 12 229s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 229s (1) pair lj/cut, perpetual 229s attributes: half, newton on 229s pair build: half/bin/atomonly/newton 229s stencil: half/bin/3d 229s bin: standard 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 0 229s Time step : 0.005 229s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 229s Step Temp E_pair E_mol TotEng Press 229s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 229s 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 229s Loop time of 0.164592 on 1 procs for 100 steps with 4000 atoms 229s 229s Performance: 262466.527 tau/day, 607.561 timesteps/s, 2.430 Matom-step/s 229s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 0.1345 | 0.1345 | 0.1345 | 0.0 | 81.72 229s Neigh | 0.024643 | 0.024643 | 0.024643 | 0.0 | 14.97 229s Comm | 0.0028576 | 0.0028576 | 0.0028576 | 0.0 | 1.74 229s Output | 3.4242e-05 | 3.4242e-05 | 3.4242e-05 | 0.0 | 0.02 229s Modify | 0.002131 | 0.002131 | 0.002131 | 0.0 | 1.29 229s Other | | 0.0004277 | | | 0.26 229s 229s Nlocal: 4000 ave 4000 max 4000 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Nghost: 5754 ave 5754 max 5754 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Neighs: 150362 ave 150362 max 150362 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s 229s Total # of neighbors = 150362 229s Ave neighs/atom = 37.5905 229s Neighbor list builds = 5 229s Dangerous builds not checked 229s Total wall time: 0:00:00 229s autopkgtest [01:05:34]: test command1: -----------------------] 229s autopkgtest [01:05:34]: test command1: - - - - - - - - - - results - - - - - - - - - - 229s command1 PASS 230s autopkgtest [01:05:35]: @@@@@@@@@@@@@@@@@@@@ summary 230s crack PASS 230s dipole PASS 230s ellipse PASS 230s flow PASS 230s friction PASS 230s hugo PASS 230s command1 PASS