0s autopkgtest [04:12:55]: starting date and time: 2025-10-26 04:12:55+0000 0s autopkgtest [04:12:55]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:12:55]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9zi1h381/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rust-coreutils --apt-upgrade lambda-align2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rust-coreutils/0.3.0-0ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-9.secgroup --name adt-resolute-amd64-lambda-align2-20251026-041255-juju-7f2275-prod-proposed-migration-environment-15-b56c33e4-dbe6-42ad-8354-9852f64a1511 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-lambda-align2-20251026-041255-juju-7f2275-prod-proposed-migration-environment-15-b56c33e4-dbe6-42ad-8354-9852f64a1511 from image adt/ubuntu-resolute-amd64-server-20251026.img (UUID 08b4d2da-572c-4a3f-82f9-021e099dc3d7)... 33s autopkgtest [04:13:28]: testbed dpkg architecture: amd64 33s autopkgtest [04:13:28]: testbed apt version: 3.1.8ubuntu1 34s autopkgtest [04:13:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [04:13:29]: testbed release detected to be: None 34s autopkgtest [04:13:29]: updating testbed package index (apt update) 35s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 35s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 35s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 35s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 35s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [451 kB] 35s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.5 kB] 35s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 35s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.7 kB] 35s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [122 kB] 35s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [172 kB] 35s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4496 B] 35s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.6 kB] 35s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 35s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 35s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [357 kB] 35s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [149 kB] 35s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [12.0 kB] 35s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6132 B] 36s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [2476 B] 36s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [492 B] 36s Fetched 1478 kB in 1s (1271 kB/s) 37s Reading package lists... 37s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 37s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 37s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 37s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 38s Reading package lists... 38s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Calculating upgrade... 38s The following packages will be upgraded: 38s rust-coreutils 38s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s Need to get 3290 kB of archives. 38s After this operation, 46.1 kB of additional disk space will be used. 38s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 rust-coreutils amd64 0.3.0-0ubuntu2 [3290 kB] 40s dpkg-preconfigure: unable to re-open stdin: No such file or directory 40s Fetched 3290 kB in 2s (1892 kB/s) 40s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78454 files and directories currently installed.) 40s Preparing to unpack .../rust-coreutils_0.3.0-0ubuntu2_amd64.deb ... 40s Unpacking rust-coreutils (0.3.0-0ubuntu2) over (0.2.2-0ubuntu2) ... 40s Setting up rust-coreutils (0.3.0-0ubuntu2) ... 40s Processing triggers for man-db (2.13.1-1) ... 41s autopkgtest [04:13:36]: upgrading testbed (apt dist-upgrade and autopurge) 41s Reading package lists... 41s Building dependency tree... 41s Reading state information... 41s Calculating upgrade... 41s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 41s Reading package lists... 41s Building dependency tree... 41s Reading state information... 41s Solving dependencies... 42s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 44s autopkgtest [04:13:39]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 44s autopkgtest [04:13:39]: @@@@@@@@@@@@@@@@@@@@ apt-source lambda-align2 45s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (dsc) [2178 B] 45s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (tar) [346 kB] 45s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (diff) [17.6 kB] 45s gpgv: Signature made Thu Nov 28 15:59:17 2024 UTC 45s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 45s gpgv: Can't check signature: No public key 45s dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-3.dsc: no acceptable signature found 45s autopkgtest [04:13:40]: testing package lambda-align2 version 2.0.1-3 45s autopkgtest [04:13:40]: build not needed 46s autopkgtest [04:13:41]: test run-tests: preparing testbed 46s Reading package lists... 46s Building dependency tree... 46s Reading state information... 46s Solving dependencies... 46s The following NEW packages will be installed: 46s autoconf automake autopoint autotools-dev build-essential cmake cmake-data 46s cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 46s dh-autoreconf dh-strip-nondeterminism dwz g++ g++-15 g++-15-x86-64-linux-gnu 46s g++-x86-64-linux-gnu gcc gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu 46s gettext intltool-debian lambda-align2 libarchive-zip-perl libasan8 46s libbz2-dev libcc1-0 libdebhelper-perl libfile-stripnondeterminism-perl 46s libgcc-15-dev libgomp1 libhwasan0 libisl23 libitm1 libjsoncpp26 liblsan0 46s libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libncbi-vdb3 libquadmath0 46s librhash1 libseqan2-dev libstdc++-15-dev libtool libtsan2 libubsan1 m4 46s ncbi-blast+ ncbi-data ncbi-vdb-data po-debconf zlib1g-dev 46s 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. 46s Need to get 116 MB of archives. 46s After this operation, 430 MB of additional disk space will be used. 46s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 m4 amd64 1.4.19-8 [248 kB] 46s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 autoconf all 2.72-3.1ubuntu1 [384 kB] 46s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 autotools-dev all 20240727.1 [43.4 kB] 46s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 automake all 1:1.17-4ubuntu1 [572 kB] 47s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 autopoint all 0.23.1-2build2 [619 kB] 47s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1 [685 kB] 47s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-1build3 [57.0 kB] 47s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [12.9 MB] 47s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-5ubuntu1 [1028 B] 47s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 47s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 47s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-5ubuntu1 [47.4 kB] 47s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 47s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-5ubuntu1 [29.3 kB] 47s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-5ubuntu1 [3071 kB] 47s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-5ubuntu1 [1360 kB] 47s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-5ubuntu1 [2757 kB] 47s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-5ubuntu1 [1210 kB] 47s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-5ubuntu1 [1685 kB] 47s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-5ubuntu1 [153 kB] 47s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-5ubuntu1 [2863 kB] 48s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [25.4 MB] 48s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-5ubuntu1 [523 kB] 48s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 48s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 48s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-5ubuntu1 [2573 kB] 48s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-5ubuntu1 [14.4 MB] 48s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-5ubuntu1 [23.7 kB] 48s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 48s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 48s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 48s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 cmake-data all 3.31.6-2ubuntu6 [2295 kB] 48s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 48s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 librhash1 amd64 1.4.6-1 [134 kB] 48s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 cmake amd64 3.31.6-2ubuntu6 [12.9 MB] 49s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 49s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libtool all 2.5.4-4build1 [169 kB] 49s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 dh-autoreconf all 21 [12.5 kB] 49s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 49s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [20.4 kB] 49s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 dh-strip-nondeterminism all 1.14.2-1 [5098 B] 49s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 debugedit amd64 1:5.2-3 [49.9 kB] 49s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 dwz amd64 0.16-2 [115 kB] 49s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gettext amd64 0.23.1-2build2 [1043 kB] 49s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 49s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 49s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 debhelper all 13.24.2ubuntu1 [896 kB] 49s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 lambda-align2 amd64 2.0.1-3 [2177 kB] 49s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build1 [37.0 kB] 49s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedcrypto16 amd64 3.6.2-3ubuntu1 [276 kB] 49s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedx509-7 amd64 3.6.2-3ubuntu1 [37.1 kB] 49s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmbedtls21 amd64 3.6.2-3ubuntu1 [126 kB] 49s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB] 49s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1376 kB] 49s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libseqan2-dev all 2.4.0+dfsg-16 [1206 kB] 49s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB] 49s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] 50s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 50s Fetched 116 MB in 3s (33.6 MB/s) 50s Selecting previously unselected package m4. 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78514 files and directories currently installed.) 50s Preparing to unpack .../00-m4_1.4.19-8_amd64.deb ... 50s Unpacking m4 (1.4.19-8) ... 50s Selecting previously unselected package autoconf. 50s Preparing to unpack .../01-autoconf_2.72-3.1ubuntu1_all.deb ... 50s Unpacking autoconf (2.72-3.1ubuntu1) ... 50s Selecting previously unselected package autotools-dev. 50s Preparing to unpack .../02-autotools-dev_20240727.1_all.deb ... 50s Unpacking autotools-dev (20240727.1) ... 50s Selecting previously unselected package automake. 50s Preparing to unpack .../03-automake_1%3a1.17-4ubuntu1_all.deb ... 50s Unpacking automake (1:1.17-4ubuntu1) ... 50s Selecting previously unselected package autopoint. 50s Preparing to unpack .../04-autopoint_0.23.1-2build2_all.deb ... 50s Unpacking autopoint (0.23.1-2build2) ... 50s Selecting previously unselected package libisl23:amd64. 50s Preparing to unpack .../05-libisl23_0.27-1_amd64.deb ... 50s Unpacking libisl23:amd64 (0.27-1) ... 50s Selecting previously unselected package libmpc3:amd64. 50s Preparing to unpack .../06-libmpc3_1.3.1-1build3_amd64.deb ... 50s Unpacking libmpc3:amd64 (1.3.1-1build3) ... 50s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 50s Preparing to unpack .../07-cpp-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package cpp-15. 50s Preparing to unpack .../08-cpp-15_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package cpp-x86-64-linux-gnu. 50s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 50s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 50s Selecting previously unselected package cpp. 50s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 50s Unpacking cpp (4:15.2.0-4ubuntu1) ... 50s Selecting previously unselected package libcc1-0:amd64. 50s Preparing to unpack .../11-libcc1-0_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libcc1-0:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libgomp1:amd64. 50s Preparing to unpack .../12-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libitm1:amd64. 50s Preparing to unpack .../13-libitm1_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libitm1:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libasan8:amd64. 50s Preparing to unpack .../14-libasan8_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libasan8:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package liblsan0:amd64. 50s Preparing to unpack .../15-liblsan0_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking liblsan0:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libtsan2:amd64. 50s Preparing to unpack .../16-libtsan2_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libtsan2:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libubsan1:amd64. 50s Preparing to unpack .../17-libubsan1_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libubsan1:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libhwasan0:amd64. 50s Preparing to unpack .../18-libhwasan0_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libhwasan0:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libquadmath0:amd64. 50s Preparing to unpack .../19-libquadmath0_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libquadmath0:amd64 (15.2.0-5ubuntu1) ... 50s Selecting previously unselected package libgcc-15-dev:amd64. 50s Preparing to unpack .../20-libgcc-15-dev_15.2.0-5ubuntu1_amd64.deb ... 50s Unpacking libgcc-15-dev:amd64 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 51s Preparing to unpack .../21-gcc-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package gcc-15. 51s Preparing to unpack .../22-gcc-15_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package gcc-x86-64-linux-gnu. 51s Preparing to unpack .../23-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 51s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 51s Selecting previously unselected package gcc. 51s Preparing to unpack .../24-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 51s Unpacking gcc (4:15.2.0-4ubuntu1) ... 51s Selecting previously unselected package libstdc++-15-dev:amd64. 51s Preparing to unpack .../25-libstdc++-15-dev_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking libstdc++-15-dev:amd64 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package g++-15-x86-64-linux-gnu. 51s Preparing to unpack .../26-g++-15-x86-64-linux-gnu_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking g++-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package g++-15. 51s Preparing to unpack .../27-g++-15_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking g++-15 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package g++-x86-64-linux-gnu. 51s Preparing to unpack .../28-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 51s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 51s Selecting previously unselected package g++. 51s Preparing to unpack .../29-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 51s Unpacking g++ (4:15.2.0-4ubuntu1) ... 51s Selecting previously unselected package build-essential. 51s Preparing to unpack .../30-build-essential_12.12ubuntu1_amd64.deb ... 51s Unpacking build-essential (12.12ubuntu1) ... 51s Selecting previously unselected package cmake-data. 51s Preparing to unpack .../31-cmake-data_3.31.6-2ubuntu6_all.deb ... 51s Unpacking cmake-data (3.31.6-2ubuntu6) ... 51s Selecting previously unselected package libjsoncpp26:amd64. 51s Preparing to unpack .../32-libjsoncpp26_1.9.6-3_amd64.deb ... 51s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 51s Selecting previously unselected package librhash1:amd64. 51s Preparing to unpack .../33-librhash1_1.4.6-1_amd64.deb ... 51s Unpacking librhash1:amd64 (1.4.6-1) ... 51s Selecting previously unselected package cmake. 51s Preparing to unpack .../34-cmake_3.31.6-2ubuntu6_amd64.deb ... 51s Unpacking cmake (3.31.6-2ubuntu6) ... 51s Selecting previously unselected package libdebhelper-perl. 51s Preparing to unpack .../35-libdebhelper-perl_13.24.2ubuntu1_all.deb ... 51s Unpacking libdebhelper-perl (13.24.2ubuntu1) ... 51s Selecting previously unselected package libtool. 51s Preparing to unpack .../36-libtool_2.5.4-4build1_all.deb ... 51s Unpacking libtool (2.5.4-4build1) ... 51s Selecting previously unselected package dh-autoreconf. 51s Preparing to unpack .../37-dh-autoreconf_21_all.deb ... 51s Unpacking dh-autoreconf (21) ... 51s Selecting previously unselected package libarchive-zip-perl. 51s Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... 51s Unpacking libarchive-zip-perl (1.68-1) ... 51s Selecting previously unselected package libfile-stripnondeterminism-perl. 51s Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... 51s Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... 51s Selecting previously unselected package dh-strip-nondeterminism. 51s Preparing to unpack .../40-dh-strip-nondeterminism_1.14.2-1_all.deb ... 51s Unpacking dh-strip-nondeterminism (1.14.2-1) ... 51s Selecting previously unselected package debugedit. 51s Preparing to unpack .../41-debugedit_1%3a5.2-3_amd64.deb ... 51s Unpacking debugedit (1:5.2-3) ... 51s Selecting previously unselected package dwz. 51s Preparing to unpack .../42-dwz_0.16-2_amd64.deb ... 51s Unpacking dwz (0.16-2) ... 52s Selecting previously unselected package gettext. 52s Preparing to unpack .../43-gettext_0.23.1-2build2_amd64.deb ... 52s Unpacking gettext (0.23.1-2build2) ... 52s Selecting previously unselected package intltool-debian. 52s Preparing to unpack .../44-intltool-debian_0.35.0+20060710.6_all.deb ... 52s Unpacking intltool-debian (0.35.0+20060710.6) ... 52s Selecting previously unselected package po-debconf. 52s Preparing to unpack .../45-po-debconf_1.0.21+nmu1_all.deb ... 52s Unpacking po-debconf (1.0.21+nmu1) ... 52s Selecting previously unselected package debhelper. 52s Preparing to unpack .../46-debhelper_13.24.2ubuntu1_all.deb ... 52s Unpacking debhelper (13.24.2ubuntu1) ... 52s Selecting previously unselected package lambda-align2. 52s Preparing to unpack .../47-lambda-align2_2.0.1-3_amd64.deb ... 52s Unpacking lambda-align2 (2.0.1-3) ... 52s Selecting previously unselected package libbz2-dev:amd64. 52s Preparing to unpack .../48-libbz2-dev_1.0.8-6build1_amd64.deb ... 52s Unpacking libbz2-dev:amd64 (1.0.8-6build1) ... 52s Selecting previously unselected package libmbedcrypto16:amd64. 52s Preparing to unpack .../49-libmbedcrypto16_3.6.2-3ubuntu1_amd64.deb ... 52s Unpacking libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 52s Selecting previously unselected package libmbedx509-7:amd64. 52s Preparing to unpack .../50-libmbedx509-7_3.6.2-3ubuntu1_amd64.deb ... 52s Unpacking libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 52s Selecting previously unselected package libmbedtls21:amd64. 52s Preparing to unpack .../51-libmbedtls21_3.6.2-3ubuntu1_amd64.deb ... 52s Unpacking libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 52s Selecting previously unselected package ncbi-vdb-data. 52s Preparing to unpack .../52-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... 52s Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... 52s Selecting previously unselected package libncbi-vdb3:amd64. 52s Preparing to unpack .../53-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... 52s Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... 52s Selecting previously unselected package libseqan2-dev. 52s Preparing to unpack .../54-libseqan2-dev_2.4.0+dfsg-16_all.deb ... 52s Unpacking libseqan2-dev (2.4.0+dfsg-16) ... 52s Selecting previously unselected package ncbi-data. 52s Preparing to unpack .../55-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... 52s Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... 52s Selecting previously unselected package ncbi-blast+. 52s Preparing to unpack .../56-ncbi-blast+_2.16.0+ds-7_amd64.deb ... 52s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 52s Selecting previously unselected package zlib1g-dev:amd64. 52s Preparing to unpack .../57-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 52s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 52s Setting up ncbi-data (6.1.20170106+dfsg2-6) ... 52s Setting up libarchive-zip-perl (1.68-1) ... 52s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 52s Setting up m4 (1.4.19-8) ... 52s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 52s Setting up libseqan2-dev (2.4.0+dfsg-16) ... 52s Setting up autotools-dev (20240727.1) ... 52s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 52s Setting up libquadmath0:amd64 (15.2.0-5ubuntu1) ... 52s Setting up lambda-align2 (2.0.1-3) ... 52s Setting up libmpc3:amd64 (1.3.1-1build3) ... 52s Setting up autopoint (0.23.1-2build2) ... 52s Setting up autoconf (2.72-3.1ubuntu1) ... 52s Setting up libubsan1:amd64 (15.2.0-5ubuntu1) ... 52s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 52s Setting up dwz (0.16-2) ... 52s Setting up libhwasan0:amd64 (15.2.0-5ubuntu1) ... 52s Setting up libasan8:amd64 (15.2.0-5ubuntu1) ... 52s Setting up debugedit (1:5.2-3) ... 52s Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... 52s Setting up cmake-data (3.31.6-2ubuntu6) ... 52s Setting up librhash1:amd64 (1.4.6-1) ... 52s Setting up libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 52s Setting up libtsan2:amd64 (15.2.0-5ubuntu1) ... 52s Setting up libisl23:amd64 (0.27-1) ... 52s Setting up libcc1-0:amd64 (15.2.0-5ubuntu1) ... 52s Setting up liblsan0:amd64 (15.2.0-5ubuntu1) ... 52s Setting up libitm1:amd64 (15.2.0-5ubuntu1) ... 52s Setting up libbz2-dev:amd64 (1.0.8-6build1) ... 52s Setting up automake (1:1.17-4ubuntu1) ... 52s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 52s Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... 52s Setting up gettext (0.23.1-2build2) ... 52s Setting up libgcc-15-dev:amd64 (15.2.0-5ubuntu1) ... 52s Setting up cpp-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 52s Setting up intltool-debian (0.35.0+20060710.6) ... 52s Setting up gcc-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 52s Setting up libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 52s Setting up libstdc++-15-dev:amd64 (15.2.0-5ubuntu1) ... 52s Setting up libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 52s Setting up dh-strip-nondeterminism (1.14.2-1) ... 52s Setting up cpp-15 (15.2.0-5ubuntu1) ... 52s Setting up cmake (3.31.6-2ubuntu6) ... 52s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 52s Setting up g++-15-x86-64-linux-gnu (15.2.0-5ubuntu1) ... 52s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 52s Setting up po-debconf (1.0.21+nmu1) ... 52s Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... 52s Setting up ncbi-blast+ (2.16.0+ds-7) ... 52s Setting up gcc-15 (15.2.0-5ubuntu1) ... 52s Setting up cpp (4:15.2.0-4ubuntu1) ... 52s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 52s Setting up g++-15 (15.2.0-5ubuntu1) ... 52s Setting up libtool (2.5.4-4build1) ... 52s Setting up gcc (4:15.2.0-4ubuntu1) ... 52s Setting up dh-autoreconf (21) ... 52s Setting up g++ (4:15.2.0-4ubuntu1) ... 52s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 52s Setting up build-essential (12.12ubuntu1) ... 52s Setting up debhelper (13.24.2ubuntu1) ... 52s Processing triggers for install-info (7.1.1-1ubuntu1) ... 52s Processing triggers for libc-bin (2.42-0ubuntu3) ... 52s Processing triggers for man-db (2.13.1-1) ... 54s autopkgtest [04:13:49]: test run-tests: [----------------------- 54s + mkdir test_build 54s + ls debian/*.md5sums.gz 54s + gzip --keep debian/db_nucl_fm.md5sums 54s + gzip --keep debian/db_nucl_sa.md5sums 54s + gzip --keep debian/db_prot_fm.md5sums 54s + gzip --keep debian/db_prot_sa.md5sums 54s + gzip --keep debian/db_trans_fm.md5sums 54s + gzip --keep debian/db_trans_sa.md5sums 54s + cp --backup debian/db_nucl_fm.md5sums.gz debian/db_nucl_sa.md5sums.gz debian/db_prot_fm.md5sums.gz debian/db_prot_sa.md5sums.gz debian/db_trans_fm.md5sums.gz debian/db_trans_sa.md5sums.gz tests/ 54s + cd test_build 54s + cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON ../ 54s CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): 54s Compatibility with CMake < 3.10 will be removed from a future version of 54s CMake. 54s 54s Update the VERSION argument value. Or, use the ... syntax 54s to tell CMake that the project requires at least but has been updated 54s to work with policies introduced by or earlier. 54s 54s 54s Compiler Detection 54s -- The CXX compiler identification is GNU 15.2.0 54s -- Detecting CXX compiler ABI info 54s -- Detecting CXX compiler ABI info - done 54s -- Check for working CXX compiler: /usr/bin/c++ - skipped 54s -- Detecting CXX compile features 54s -- Detecting CXX compile features - done 54s 54s Dependency detection 54s CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): 54s Policy CMP0153 is not set: The exec_program command should not be called. 54s Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy 54s command to set the policy and suppress this warning. 54s 54s Use execute_process() instead. 54s Call Stack (most recent call first): 54s src/CMakeLists.txt:34 (find_package) 54s This warning is for project developers. Use -Wno-dev to suppress it. 54s 55s -- These dependencies were found: 55s -- The requirements were met. 55s -- LAMBDA version is: 2.0.1 55s -- The following options are selected for the build: 55s OPENMP TRUE -fopenmp 55s ZLIB TRUE 1.3.1 55s BZIP2 TRUE 1.0.8 55s SEQAN TRUE 2.4.0 55s 55s Build configuration 55s LAMBDA_FASTBUILD OFF 55s -- Run 'cmake -LH' to get a comment on each option. 55s -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. 55s -- Configuring done (0.5s) 55s -- Generating done (0.0s) 55s -- Build files have been written to: /tmp/autopkgtest.f81B66/build.nFq/src/test_build 55s LAMBDA_LINGAPS_OPT OFF 55s LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF 55s LAMBDA_MMAPPED_DB OFF 55s LAMBDA_NATIVE_BUILD ON 55s LAMBDA_MULTIOPT_BUILD OFF 55s LAMBDA_STATIC_BUILD OFF 55s 55s Setting up unit tests 55s CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): 55s Compatibility with CMake < 3.10 will be removed from a future version of 55s CMake. 55s 55s Update the VERSION argument value. Or, use the ... syntax 55s to tell CMake that the project requires at least but has been updated 55s to work with policies introduced by or earlier. 55s 55s 55s CMake Warning: 55s Manually-specified variables were not used by the project: 55s 55s CMAKE_EXPORT_NO_PACKAGE_REGISTRY 55s 55s 55s + dpkg -L lambda-align2 55s + grep bin/ 55s + ln -s /usr/bin/lambda2 bin/ 55s + mkdir -p libexec 55s + dpkg -L lambda-align2 55s + grep libexec/ 55s + ln -s /usr/libexec/lambda2 libexec/ 55s + ln -s /usr/libexec/lambda2-sse4 libexec/ 55s + cd tests 55s + set +e 55s + nproc 55s + ctest --parallel 2 -I 1,10 --output-on-failure 55s Test project /tmp/autopkgtest.f81B66/build.nFq/src/test_build/tests 55s Start 1: test_mkindex_blastn_sa 55s Start 2: test_mkindex_blastn_fm 55s 1/10 Test #2: test_mkindex_blastn_fm ........... Passed 0.15 sec 55s Start 3: test_mkindex_blastp_sa 55s 2/10 Test #3: test_mkindex_blastp_sa ........... Passed 0.04 sec 55s Start 4: test_mkindex_blastp_fm 55s 3/10 Test #4: test_mkindex_blastp_fm ........... Passed 0.04 sec 55s Start 5: test_mkindex_blastx_sa 55s 4/10 Test #5: test_mkindex_blastx_sa ........... Passed 0.04 sec 55s Start 6: test_mkindex_blastx_fm 55s 5/10 Test #6: test_mkindex_blastx_fm ........... Passed 0.04 sec 55s Start 7: test_mkindex_tblastn_sa 55s 6/10 Test #7: test_mkindex_tblastn_sa .......... Passed 0.15 sec 55s Start 8: test_mkindex_tblastn_fm 55s 7/10 Test #8: test_mkindex_tblastn_fm .......... Passed 0.18 sec 55s Start 9: test_mkindex_tblastx_sa 55s 8/10 Test #1: test_mkindex_blastn_sa ........... Passed 0.76 sec 55s Start 10: test_mkindex_tblastx_fm 56s 9/10 Test #9: test_mkindex_tblastx_sa .......... Passed 0.27 sec 56s 10/10 Test #10: test_mkindex_tblastx_fm .......... Passed 0.22 sec 56s 56s 100% tests passed, 0 tests failed out of 10 56s 56s Total Test time (real) = 0.98 sec 56s + RESULT=0 56s + ls tests/*~ 56s + exit 0 56s autopkgtest [04:13:51]: test run-tests: -----------------------] 56s autopkgtest [04:13:51]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 56s run-tests PASS 56s autopkgtest [04:13:51]: @@@@@@@@@@@@@@@@@@@@ summary 56s run-tests PASS