0s autopkgtest [00:58:58]: starting date and time: 2025-10-19 00:58:58+0000 0s autopkgtest [00:58:58]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:58:58]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xyhic_fi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade kmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-6.secgroup --name adt-resolute-amd64-kmer-20251019-005857-juju-7f2275-prod-proposed-migration-environment-15-f51d65e5-8c48-4151-81c1-7240de8da266 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-kmer-20251019-005857-juju-7f2275-prod-proposed-migration-environment-15-f51d65e5-8c48-4151-81c1-7240de8da266 from image adt/ubuntu-resolute-amd64-server-20251018.img (UUID dd697a48-b6cc-4a02-84bf-0f9f2fad5f89)... 27s autopkgtest [00:59:25]: testbed dpkg architecture: amd64 27s autopkgtest [00:59:25]: testbed apt version: 3.1.6ubuntu2 27s autopkgtest [00:59:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [00:59:26]: testbed release detected to be: None 28s autopkgtest [00:59:26]: updating testbed package index (apt update) 28s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 28s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 28s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 29s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 29s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.0 kB] 29s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 29s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [17.1 kB] 29s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [405 kB] 29s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [66.7 kB] 29s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [116 kB] 29s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 29s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 29s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [122 kB] 29s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [314 kB] 29s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B] 29s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.5 kB] 29s Fetched 1235 kB in 1s (1876 kB/s) 30s Reading package lists... 30s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 30s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 30s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 30s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 31s Reading package lists... 31s Reading package lists... 31s Building dependency tree... 31s Reading state information... 31s Calculating upgrade... 31s The following packages will be upgraded: 31s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 31s libpython3-stdlib python3 python3-minimal 31s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 31s Need to get 2751 kB of archives. 31s After this operation, 2048 B of additional disk space will be used. 31s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 31s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 31s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 31s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.8ubuntu1 [1140 kB] 31s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.8ubuntu1 [1438 kB] 31s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-1.0-1 amd64 1.86.0-6 [85.9 kB] 31s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-2.0 amd64 1.86.0-6 [25.3 kB] 32s dpkg-preconfigure: unable to re-open stdin: No such file or directory 32s Fetched 2751 kB in 0s (6575 kB/s) 32s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 32s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 32s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 32s Setting up python3-minimal (3.13.7-2) ... 32s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 32s Preparing to unpack .../0-python3_3.13.7-2_amd64.deb ... 32s running python pre-rtupdate hooks for python3.13... 32s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 32s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_amd64.deb ... 32s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 32s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_amd64.deb ... 32s Unpacking libapt-pkg7.0:amd64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 32s Preparing to unpack .../3-apt_3.1.8ubuntu1_amd64.deb ... 32s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 32s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_amd64.deb ... 32s Unpacking libgirepository-1.0-1:amd64 (1.86.0-6) over (1.84.0-1) ... 32s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_amd64.deb ... 32s Unpacking gir1.2-girepository-2.0:amd64 (1.86.0-6) over (1.84.0-1) ... 32s Setting up libgirepository-1.0-1:amd64 (1.86.0-6) ... 32s Setting up libapt-pkg7.0:amd64 (3.1.8ubuntu1) ... 32s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 32s Setting up apt (3.1.8ubuntu1) ... 33s Setting up python3 (3.13.7-2) ... 33s running python rtupdate hooks for python3.13... 33s running python post-rtupdate hooks for python3.13... 33s Setting up gir1.2-girepository-2.0:amd64 (1.86.0-6) ... 33s Processing triggers for man-db (2.13.1-1) ... 33s Processing triggers for libc-bin (2.42-0ubuntu3) ... 34s autopkgtest [00:59:32]: upgrading testbed (apt dist-upgrade and autopurge) 34s Reading package lists... 34s Building dependency tree... 34s Reading state information... 34s Calculating upgrade... 34s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Solving dependencies... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s autopkgtest [00:59:33]: rebooting testbed after setup commands that affected boot 49s autopkgtest [00:59:47]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 51s autopkgtest [00:59:49]: @@@@@@@@@@@@@@@@@@@@ apt-source kmer 55s Get:1 http://ftpmaster.internal/ubuntu resolute/universe kmer 0~20150903+r2013-9build1 (dsc) [2395 B] 55s Get:2 http://ftpmaster.internal/ubuntu resolute/universe kmer 0~20150903+r2013-9build1 (tar) [1252 kB] 55s Get:3 http://ftpmaster.internal/ubuntu resolute/universe kmer 0~20150903+r2013-9build1 (diff) [2380 kB] 55s gpgv: Signature made Fri Jan 3 10:57:38 2025 UTC 55s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 55s gpgv: Can't check signature: No public key 55s dpkg-source: warning: cannot verify inline signature for ./kmer_0~20150903+r2013-9build1.dsc: no acceptable signature found 55s autopkgtest [00:59:53]: testing package kmer version 0~20150903+r2013-9build1 56s autopkgtest [00:59:54]: build not needed 57s autopkgtest [00:59:55]: test sim4db-unit-test: preparing testbed 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s Solving dependencies... 58s The following NEW packages will be installed: 58s adwaita-icon-theme aglfn at-spi2-common atac dconf-gsettings-backend 58s dconf-service fontconfig fontconfig-config fonts-dejavu-core 58s fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache 58s hicolor-icon-theme kmer kmer-examples leaff libaom3 libatk-bridge2.0-0t64 58s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 58s libavahi-common3 libcairo-gobject2 libcairo2 libcolord2 libcups2t64 58s libdatrie1 libdconf1 libde265-0 libdeflate0 libdouble-conversion3 58s libdrm-amdgpu1 libdrm-intel1 libegl-mesa0 libegl1 libepoxy0 58s libfile-which-perl libfontconfig1 libgbm1 libgd3 libgdk-pixbuf-2.0-0 58s libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglvnd0 libglx-mesa0 58s libglx0 libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 58s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 58s libicu76 libimagequant0 libinput-bin libinput10 libjbig0 libjpeg-turbo8 58s libjpeg8 libkmer-dev liblcms2-2 liblerc4 liblua5.4-0 libmd4c0 libmeryl-dev 58s libmtdev1t64 libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 58s libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libqt5core5t64 58s libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5printsupport5t64 58s libqt5svg5 libqt5widgets5t64 libsharpyuv0 libsm6 libthai-data libthai0 58s libtiff6 libvulkan1 libwacom-common libwacom9 libwayland-client0 58s libwayland-cursor0 libwayland-egl1 libwebp7 libwebpmux3 libwxbase3.2-1t64 58s libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 58s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 58s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 58s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 58s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 58s libxkbcommon-x11-0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 58s libxxf86vm1 meryl mesa-libgallium sim4db x11-common 58s 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 60.1 MB of archives. 58s After this operation, 217 MB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-5 [8326 B] 58s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 58s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 58s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 58s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 58s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 58s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 58s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 58s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 58s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-5 [157 kB] 58s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 gtk-update-icon-cache amd64 4.20.1+ds-2 [54.6 kB] 58s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 hicolor-icon-theme all 0.18-2 [13.3 kB] 58s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 adwaita-icon-theme all 49.0-1 [581 kB] 58s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 at-spi2-common all 2.57.1-1 [9432 B] 58s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libfile-which-perl all 1.27-2 [12.5 kB] 58s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 leaff amd64 0~20150903+r2013-9build1 [67.3 kB] 58s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 meryl amd64 0~20150903+r2013-9build1 [202 kB] 58s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 58s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 gnuplot-data all 6.0.2+dfsg1-2ubuntu1 [76.0 kB] 58s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 58s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 58s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 58s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 58s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 58s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 58s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 58s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 58s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 58s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.12.1-1 [1944 kB] 58s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.20.2-1 [12.4 kB] 58s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1 [169 kB] 58s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.20.2-1 [10.1 kB] 58s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.20.2-1 [519 kB] 58s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 58s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 58s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 58s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libgd3 amd64 2.3.3-13ubuntu1 [130 kB] 58s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 58s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.15.0-2.3ubuntu1 [180 kB] 58s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 58s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 58s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 58s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.13-4 [19.3 kB] 58s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 58s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.56.3-1build1 [247 kB] 58s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1build1 [55.0 kB] 58s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1build1 [30.3 kB] 58s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.3.1-1build1 [42.8 kB] 58s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu76 amd64 76.1-4ubuntu2 [11.2 MB] 58s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 59s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5core5t64 amd64 5.15.17+dfsg-1ubuntu1 [2036 kB] 59s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-1build2 [65.1 kB] 59s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.125-1 [21.6 kB] 59s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB] 59s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.125-1 [64.9 kB] 59s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 59s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2build1 [8036 B] 59s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2build1 [6446 B] 59s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2build1 [19.7 kB] 59s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2build1 [10.1 kB] 59s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2build1 [11.1 kB] 59s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 59s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.2.3-1ubuntu1 [11.1 MB] 59s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.2.3-1ubuntu1 [34.0 kB] 59s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-client0 amd64 1.24.0-1build1 [29.6 kB] 59s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl-mesa0 amd64 25.2.3-1ubuntu1 [117 kB] 59s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl1 amd64 1.7.0-1build2 [31.2 kB] 59s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2build1 [27.6 kB] 59s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 59s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.321.0-1 [154 kB] 59s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.2.3-1ubuntu1 [36.9 kB] 59s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.2.3-1ubuntu1 [110 kB] 59s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-1build2 [40.3 kB] 59s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-1build2 [101 kB] 59s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 59s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 59s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 59s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7 [16.9 kB] 59s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom-common all 2.16.1-1 [113 kB] 59s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom9 amd64 2.16.1-1 [28.3 kB] 59s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput-bin amd64 1.28.1-1build1 [24.0 kB] 59s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput10 amd64 1.28.1-1build1 [153 kB] 59s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 59s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5dbus5t64 amd64 5.15.17+dfsg-1ubuntu1 [221 kB] 59s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5network5t64 amd64 5.15.17+dfsg-1ubuntu1 [723 kB] 59s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 59s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 59s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 59s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 59s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 59s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 59s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shape0 amd64 1.17.0-2build1 [6544 B] 59s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinerama0 amd64 1.17.0-2build1 [5752 B] 59s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinput0 amd64 1.17.0-2build1 [36.7 kB] 59s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xkb1 amd64 1.17.0-2build1 [35.3 kB] 59s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2.1 [15.0 kB] 59s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5gui5t64 amd64 5.15.17+dfsg-1ubuntu1 [3790 kB] 59s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common-data amd64 0.8-16ubuntu3 [31.1 kB] 59s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common3 amd64 0.8-16ubuntu3 [25.3 kB] 59s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-client3 amd64 0.8-16ubuntu3 [28.8 kB] 59s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libcups2t64 amd64 2.4.12-0ubuntu3 [272 kB] 59s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5widgets5t64 amd64 5.15.17+dfsg-1ubuntu1 [2559 kB] 59s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5printsupport5t64 amd64 5.15.17+dfsg-1ubuntu1 [207 kB] 59s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5svg5 amd64 5.15.17-1 [148 kB] 59s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 59s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 59s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxbase3.2-1t64 amd64 3.2.8+dfsg-2 [910 kB] 59s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo-gobject2 amd64 1.18.4-1build1 [128 kB] 59s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk1.0-0t64 amd64 2.57.1-1 [56.3 kB] 59s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 59s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libatspi2.0-0t64 amd64 2.57.1-1 [85.3 kB] 59s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk-bridge2.0-0t64 amd64 2.57.1-1 [66.7 kB] 59s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 59s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolord2 amd64 1.4.7-3build1 [149 kB] 59s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB] 59s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-cursor0 amd64 1.24.0-1build1 [11.1 kB] 59s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-egl1 amd64 1.24.0-1build1 [6474 B] 59s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B] 59s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 59s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcursor1 amd64 1:1.2.3-1 [23.1 kB] 59s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 59s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 59s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 59s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libdconf1 amd64 0.40.0-5willsync1 [41.3 kB] 59s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-service amd64 0.40.0-5willsync1 [28.7 kB] 59s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-gsettings-backend amd64 0.40.0-5willsync1 [23.5 kB] 59s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 59s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-0t64 amd64 3.24.50-1ubuntu2 [3263 kB] 59s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libnotify4 amd64 0.8.6-2 [28.0 kB] 59s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtst6 amd64 2:1.2.5-1 [13.0 kB] 59s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk3.2-1t64 amd64 3.2.8+dfsg-2 [4614 kB] 59s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 gnuplot-qt amd64 6.0.2+dfsg1-2ubuntu1 [1258 kB] 59s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 gnuplot all 6.0.2+dfsg1-2ubuntu1 [3574 B] 59s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 atac amd64 0~20150903+r2013-9build1 [371 kB] 59s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 sim4db amd64 0~20150903+r2013-9build1 [529 kB] 60s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 kmer all 0~20150903+r2013-9build1 [3832 B] 60s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 kmer-examples all 0~20150903+r2013-9build1 [2351 kB] 60s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmeryl-dev amd64 0~20150903+r2013-9build1 [58.6 kB] 60s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmer-dev amd64 0~20150903+r2013-9build1 [217 kB] 60s Fetched 60.1 MB in 2s (29.4 MB/s) 60s Selecting previously unselected package libgdk-pixbuf2.0-common. 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 60s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.12+dfsg-5_all.deb ... 60s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-5) ... 60s Selecting previously unselected package libjpeg-turbo8:amd64. 60s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 60s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 60s Selecting previously unselected package libjpeg8:amd64. 60s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_amd64.deb ... 60s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 60s Selecting previously unselected package libdeflate0:amd64. 60s Preparing to unpack .../003-libdeflate0_1.23-2_amd64.deb ... 60s Unpacking libdeflate0:amd64 (1.23-2) ... 60s Selecting previously unselected package libjbig0:amd64. 60s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 60s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 60s Selecting previously unselected package liblerc4:amd64. 60s Preparing to unpack .../005-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 60s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 60s Selecting previously unselected package libsharpyuv0:amd64. 60s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_amd64.deb ... 60s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 60s Selecting previously unselected package libwebp7:amd64. 60s Preparing to unpack .../007-libwebp7_1.5.0-0.1_amd64.deb ... 60s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 60s Selecting previously unselected package libtiff6:amd64. 60s Preparing to unpack .../008-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 60s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 60s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 60s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.12+dfsg-5_amd64.deb ... 60s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-5) ... 60s Selecting previously unselected package gtk-update-icon-cache. 60s Preparing to unpack .../010-gtk-update-icon-cache_4.20.1+ds-2_amd64.deb ... 60s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 60s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 60s Unpacking gtk-update-icon-cache (4.20.1+ds-2) ... 60s Selecting previously unselected package hicolor-icon-theme. 60s Preparing to unpack .../011-hicolor-icon-theme_0.18-2_all.deb ... 60s Unpacking hicolor-icon-theme (0.18-2) ... 60s Selecting previously unselected package adwaita-icon-theme. 60s Preparing to unpack .../012-adwaita-icon-theme_49.0-1_all.deb ... 60s Unpacking adwaita-icon-theme (49.0-1) ... 60s Selecting previously unselected package at-spi2-common. 60s Preparing to unpack .../013-at-spi2-common_2.57.1-1_all.deb ... 60s Unpacking at-spi2-common (2.57.1-1) ... 60s Selecting previously unselected package libfile-which-perl. 60s Preparing to unpack .../014-libfile-which-perl_1.27-2_all.deb ... 60s Unpacking libfile-which-perl (1.27-2) ... 60s Selecting previously unselected package leaff. 60s Preparing to unpack .../015-leaff_0~20150903+r2013-9build1_amd64.deb ... 60s Unpacking leaff (0~20150903+r2013-9build1) ... 60s Selecting previously unselected package meryl. 60s Preparing to unpack .../016-meryl_0~20150903+r2013-9build1_amd64.deb ... 60s Unpacking meryl (0~20150903+r2013-9build1) ... 60s Selecting previously unselected package aglfn. 60s Preparing to unpack .../017-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 60s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 60s Selecting previously unselected package gnuplot-data. 60s Preparing to unpack .../018-gnuplot-data_6.0.2+dfsg1-2ubuntu1_all.deb ... 60s Unpacking gnuplot-data (6.0.2+dfsg1-2ubuntu1) ... 60s Selecting previously unselected package fonts-dejavu-mono. 60s Preparing to unpack .../019-fonts-dejavu-mono_2.37-8_all.deb ... 60s Unpacking fonts-dejavu-mono (2.37-8) ... 60s Selecting previously unselected package fonts-dejavu-core. 60s Preparing to unpack .../020-fonts-dejavu-core_2.37-8_all.deb ... 60s Unpacking fonts-dejavu-core (2.37-8) ... 60s Selecting previously unselected package fontconfig-config. 60s Preparing to unpack .../021-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 61s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 61s Selecting previously unselected package libfontconfig1:amd64. 61s Preparing to unpack .../022-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 61s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 61s Selecting previously unselected package libpixman-1-0:amd64. 61s Preparing to unpack .../023-libpixman-1-0_0.44.0-3_amd64.deb ... 61s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 61s Selecting previously unselected package libxcb-render0:amd64. 61s Preparing to unpack .../024-libxcb-render0_1.17.0-2build1_amd64.deb ... 61s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 61s Selecting previously unselected package libxcb-shm0:amd64. 61s Preparing to unpack .../025-libxcb-shm0_1.17.0-2build1_amd64.deb ... 61s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 61s Selecting previously unselected package libxrender1:amd64. 61s Preparing to unpack .../026-libxrender1_1%3a0.9.12-1_amd64.deb ... 61s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 61s Selecting previously unselected package libcairo2:amd64. 61s Preparing to unpack .../027-libcairo2_1.18.4-1build1_amd64.deb ... 61s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 61s Selecting previously unselected package libaom3:amd64. 61s Preparing to unpack .../028-libaom3_3.12.1-1_amd64.deb ... 61s Unpacking libaom3:amd64 (3.12.1-1) ... 61s Selecting previously unselected package libheif-plugin-aomdec:amd64. 61s Preparing to unpack .../029-libheif-plugin-aomdec_1.20.2-1_amd64.deb ... 61s Unpacking libheif-plugin-aomdec:amd64 (1.20.2-1) ... 61s Selecting previously unselected package libde265-0:amd64. 61s Preparing to unpack .../030-libde265-0_1.0.16-1_amd64.deb ... 61s Unpacking libde265-0:amd64 (1.0.16-1) ... 61s Selecting previously unselected package libheif-plugin-libde265:amd64. 61s Preparing to unpack .../031-libheif-plugin-libde265_1.20.2-1_amd64.deb ... 61s Unpacking libheif-plugin-libde265:amd64 (1.20.2-1) ... 61s Selecting previously unselected package libheif1:amd64. 61s Preparing to unpack .../032-libheif1_1.20.2-1_amd64.deb ... 61s Unpacking libheif1:amd64 (1.20.2-1) ... 61s Selecting previously unselected package libgomp1:amd64. 61s Preparing to unpack .../033-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 61s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 61s Selecting previously unselected package libimagequant0:amd64. 61s Preparing to unpack .../034-libimagequant0_2.18.0-1build1_amd64.deb ... 61s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 61s Selecting previously unselected package libxpm4:amd64. 61s Preparing to unpack .../035-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 61s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 61s Selecting previously unselected package libgd3:amd64. 61s Preparing to unpack .../036-libgd3_2.3.3-13ubuntu1_amd64.deb ... 61s Unpacking libgd3:amd64 (2.3.3-13ubuntu1) ... 61s Selecting previously unselected package liblua5.4-0:amd64. 61s Preparing to unpack .../037-liblua5.4-0_5.4.8-1_amd64.deb ... 61s Unpacking liblua5.4-0:amd64 (5.4.8-1) ... 61s Selecting previously unselected package fontconfig. 61s Preparing to unpack .../038-fontconfig_2.15.0-2.3ubuntu1_amd64.deb ... 61s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 61s Selecting previously unselected package libgraphite2-3:amd64. 61s Preparing to unpack .../039-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 61s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 61s Selecting previously unselected package libharfbuzz0b:amd64. 61s Preparing to unpack .../040-libharfbuzz0b_10.2.0-1_amd64.deb ... 61s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 61s Selecting previously unselected package libthai-data. 61s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ... 61s Unpacking libthai-data (0.1.29-2build1) ... 61s Selecting previously unselected package libdatrie1:amd64. 61s Preparing to unpack .../042-libdatrie1_0.2.13-4_amd64.deb ... 61s Unpacking libdatrie1:amd64 (0.2.13-4) ... 61s Selecting previously unselected package libthai0:amd64. 61s Preparing to unpack .../043-libthai0_0.1.29-2build1_amd64.deb ... 61s Unpacking libthai0:amd64 (0.1.29-2build1) ... 61s Selecting previously unselected package libpango-1.0-0:amd64. 61s Preparing to unpack .../044-libpango-1.0-0_1.56.3-1build1_amd64.deb ... 61s Unpacking libpango-1.0-0:amd64 (1.56.3-1build1) ... 61s Selecting previously unselected package libpangoft2-1.0-0:amd64. 61s Preparing to unpack .../045-libpangoft2-1.0-0_1.56.3-1build1_amd64.deb ... 61s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1build1) ... 61s Selecting previously unselected package libpangocairo-1.0-0:amd64. 61s Preparing to unpack .../046-libpangocairo-1.0-0_1.56.3-1build1_amd64.deb ... 61s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1build1) ... 61s Selecting previously unselected package libdouble-conversion3:amd64. 61s Preparing to unpack .../047-libdouble-conversion3_3.3.1-1build1_amd64.deb ... 61s Unpacking libdouble-conversion3:amd64 (3.3.1-1build1) ... 61s Selecting previously unselected package libicu76:amd64. 61s Preparing to unpack .../048-libicu76_76.1-4ubuntu2_amd64.deb ... 61s Unpacking libicu76:amd64 (76.1-4ubuntu2) ... 61s Selecting previously unselected package libpcre2-16-0:amd64. 61s Preparing to unpack .../049-libpcre2-16-0_10.46-1_amd64.deb ... 61s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 61s Selecting previously unselected package libqt5core5t64:amd64. 61s Preparing to unpack .../050-libqt5core5t64_5.15.17+dfsg-1ubuntu1_amd64.deb ... 61s Unpacking libqt5core5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 61s Selecting previously unselected package libglvnd0:amd64. 61s Preparing to unpack .../051-libglvnd0_1.7.0-1build2_amd64.deb ... 61s Unpacking libglvnd0:amd64 (1.7.0-1build2) ... 61s Selecting previously unselected package libdrm-amdgpu1:amd64. 61s Preparing to unpack .../052-libdrm-amdgpu1_2.4.125-1_amd64.deb ... 61s Unpacking libdrm-amdgpu1:amd64 (2.4.125-1) ... 61s Selecting previously unselected package libpciaccess0:amd64. 61s Preparing to unpack .../053-libpciaccess0_0.18.1-1ubuntu2_amd64.deb ... 61s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu2) ... 61s Selecting previously unselected package libdrm-intel1:amd64. 61s Preparing to unpack .../054-libdrm-intel1_2.4.125-1_amd64.deb ... 61s Unpacking libdrm-intel1:amd64 (2.4.125-1) ... 61s Selecting previously unselected package libx11-xcb1:amd64. 61s Preparing to unpack .../055-libx11-xcb1_2%3a1.8.12-1build1_amd64.deb ... 61s Unpacking libx11-xcb1:amd64 (2:1.8.12-1build1) ... 61s Selecting previously unselected package libxcb-dri3-0:amd64. 61s Preparing to unpack .../056-libxcb-dri3-0_1.17.0-2build1_amd64.deb ... 61s Unpacking libxcb-dri3-0:amd64 (1.17.0-2build1) ... 61s Selecting previously unselected package libxcb-present0:amd64. 61s Preparing to unpack .../057-libxcb-present0_1.17.0-2build1_amd64.deb ... 61s Unpacking libxcb-present0:amd64 (1.17.0-2build1) ... 61s Selecting previously unselected package libxcb-randr0:amd64. 61s Preparing to unpack .../058-libxcb-randr0_1.17.0-2build1_amd64.deb ... 61s Unpacking libxcb-randr0:amd64 (1.17.0-2build1) ... 61s Selecting previously 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libxcb-xfixes0:amd64 (1.17.0-2build1) ... 62s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 62s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 62s Setting up hicolor-icon-theme (0.18-2) ... 62s Setting up libxi6:amd64 (2:1.8.2-1) ... 62s Setting up libxcb-xinput0:amd64 (1.17.0-2build1) ... 62s Setting up libxrender1:amd64 (1:0.9.12-1) ... 62s Setting up libdatrie1:amd64 (0.2.13-4) ... 62s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 62s Setting up libglvnd0:amd64 (1.7.0-1build2) ... 62s Setting up libxcb-glx0:amd64 (1.17.0-2build1) ... 62s Setting up libdrm-intel1:amd64 (2.4.125-1) ... 62s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-5) ... 62s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ... 62s Setting up libxcb-shape0:amd64 (1.17.0-2build1) ... 62s Setting up x11-common (1:7.7+24ubuntu1) ... 62s Setting up libdeflate0:amd64 (1.23-2) ... 62s Setting up libxcb-render-util0:amd64 (0.3.10-1) ... 62s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 62s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 62s Setting up sim4db (0~20150903+r2013-9build1) ... 62s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 62s Setting up kmer-examples (0~20150903+r2013-9build1) ... 62s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 62s Setting up libpcre2-16-0:amd64 (10.46-1) ... 62s Setting up libcolord2:amd64 (1.4.7-3build1) ... 62s Setting up libxcb-util1:amd64 (0.4.1-1) ... 62s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 62s Setting up libxcb-xkb1:amd64 (1.17.0-2build1) ... 62s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 62s Setting up libxcb-present0:amd64 (1.17.0-2build1) ... 62s Setting up libdconf1:amd64 (0.40.0-5willsync1) ... 62s Setting up libpcre2-32-0:amd64 (10.46-1) ... 62s Setting up libxcb-xinerama0:amd64 (1.17.0-2build1) ... 62s Setting up libepoxy0:amd64 (1.5.10-2) ... 62s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 62s Setting up libxcb-sync1:amd64 (1.17.0-2build1) ... 62s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 62s Setting up libavahi-common-data:amd64 (0.8-16ubuntu3) ... 62s Setting up libatspi2.0-0t64:amd64 (2.57.1-1) ... 62s Setting up libxinerama1:amd64 (2:1.1.4-3build1) ... 62s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 62s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2.1) ... 62s Setting up fonts-dejavu-mono (2.37-8) ... 62s Setting up libxrandr2:amd64 (2:1.5.4-1) ... 62s Setting up libmeryl-dev (0~20150903+r2013-9build1) ... 62s Setting up fonts-dejavu-core (2.37-8) ... 62s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 62s Setting up libvulkan1:amd64 (1.4.321.0-1) ... 62s Setting up libwebp7:amd64 (1.5.0-0.1) ... 62s Setting up libmtdev1t64:amd64 (1.1.7-1) ... 62s Setting up libxshmfence1:amd64 (1.3.3-1) ... 62s Setting up at-spi2-common (2.57.1-1) ... 62s Setting up libxcb-randr0:amd64 (1.17.0-2build1) ... 62s Setting up libmd4c0:amd64 (0.5.2-2) ... 62s Setting up liblua5.4-0:amd64 (5.4.8-1) ... 62s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 62s Setting up libthai-data (0.1.29-2build1) ... 62s Setting up libwayland-egl1:amd64 (1.24.0-1build1) ... 62s Setting up libicu76:amd64 (76.1-4ubuntu2) ... 62s Setting up libwxbase3.2-1t64:amd64 (3.2.8+dfsg-2) ... 62s Setting up libde265-0:amd64 (1.0.16-1) ... 62s Setting up meryl (0~20150903+r2013-9build1) ... 62s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 62s Setting up libxcomposite1:amd64 (1:0.4.6-1) ... 62s Setting up libgudev-1.0-0:amd64 (1:238-7) ... 62s Setting up libdrm-amdgpu1:amd64 (2.4.125-1) ... 62s Setting up libwacom-common (2.16.1-1) ... 62s Setting up libwayland-client0:amd64 (1.24.0-1build1) ... 62s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 62s Setting up gnuplot-data (6.0.2+dfsg1-2ubuntu1) ... 62s Setting up libice6:amd64 (2:1.1.1-1) ... 62s Setting up mesa-libgallium:amd64 (25.2.3-1ubuntu1) ... 62s Setting up libatk1.0-0t64:amd64 (2.57.1-1) ... 62s Setting up libgbm1:amd64 (25.2.3-1ubuntu1) ... 62s Setting up libwacom9:amd64 (2.16.1-1) ... 62s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 63s Setting up libxtst6:amd64 (2:1.2.5-1) ... 63s Setting up libxcursor1:amd64 (1:1.2.3-1) ... 63s Setting up libgl1-mesa-dri:amd64 (25.2.3-1ubuntu1) ... 63s Setting up libavahi-common3:amd64 (0.8-16ubuntu3) ... 63s Setting up dconf-service (0.40.0-5willsync1) ... 63s Setting up libinput-bin (1.28.1-1build1) ... 63s Setting up libthai0:amd64 (0.1.29-2build1) ... 63s Setting up libqt5core5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 63s Setting up libegl-mesa0:amd64 (25.2.3-1ubuntu1) ... 63s Setting up libkmer-dev (0~20150903+r2013-9build1) ... 63s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 63s Setting up libwayland-cursor0:amd64 (1.24.0-1build1) ... 63s Setting up libegl1:amd64 (1.7.0-1build2) ... 63s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-5) ... 63s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 63s Setting up libsm6:amd64 (2:1.2.6-1) ... 63s Setting up libavahi-client3:amd64 (0.8-16ubuntu3) ... 63s Setting up libatk-bridge2.0-0t64:amd64 (2.57.1-1) ... 63s Setting up libinput10:amd64 (1.28.1-1build1) ... 63s Setting up gtk-update-icon-cache (4.20.1+ds-2) ... 63s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 65s Regenerating fonts cache... done. 65s Setting up libqt5dbus5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 65s Setting up libglx-mesa0:amd64 (25.2.3-1ubuntu1) ... 65s Setting up libglx0:amd64 (1.7.0-1build2) ... 65s Setting up dconf-gsettings-backend:amd64 (0.40.0-5willsync1) ... 65s Setting up libpango-1.0-0:amd64 (1.56.3-1build1) ... 65s Setting up libqt5network5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 65s Setting up libcairo2:amd64 (1.18.4-1build1) ... 65s Setting up libgl1:amd64 (1.7.0-1build2) ... 65s Setting up adwaita-icon-theme (49.0-1) ... 65s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 65s Setting up libnotify4:amd64 (0.8.6-2) ... 65s Setting up libcairo-gobject2:amd64 (1.18.4-1build1) ... 65s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1build1) ... 65s Setting up libcups2t64:amd64 (2.4.12-0ubuntu3) ... 65s Setting up libgtk-3-common (3.24.50-1ubuntu2) ... 65s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1build1) ... 65s Setting up libqt5gui5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 65s Setting up libqt5widgets5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 65s Setting up libqt5svg5:amd64 (5.15.17-1) ... 65s Setting up libqt5printsupport5t64:amd64 (5.15.17+dfsg-1ubuntu1) ... 65s Setting up libheif-plugin-aomdec:amd64 (1.20.2-1) ... 65s Setting up libheif-plugin-libde265:amd64 (1.20.2-1) ... 65s Setting up libheif1:amd64 (1.20.2-1) ... 65s Setting up libgd3:amd64 (2.3.3-13ubuntu1) ... 65s Processing triggers for udev (257.9-0ubuntu2) ... 65s Processing triggers for libc-bin (2.42-0ubuntu3) ... 65s Processing triggers for man-db (2.13.1-1) ... 66s Processing triggers for libglib2.0-0t64:amd64 (2.86.0-2) ... 66s Setting up libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ... 66s Setting up libwxgtk3.2-1t64:amd64 (3.2.8+dfsg-2) ... 66s Setting up gnuplot-qt (6.0.2+dfsg1-2ubuntu1) ... 66s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 66s Setting up gnuplot (6.0.2+dfsg1-2ubuntu1) ... 66s Setting up atac (0~20150903+r2013-9build1) ... 66s Setting up kmer (0~20150903+r2013-9build1) ... 66s Processing triggers for libc-bin (2.42-0ubuntu3) ... 67s autopkgtest [01:00:05]: test sim4db-unit-test: [----------------------- 68s Testing sim4 for intra-species alignment... 68s 68s Testing sim4cc for inter-species alignment... 68s 69s RESULTS: OK 69s 69s autopkgtest [01:00:07]: test sim4db-unit-test: -----------------------] 70s autopkgtest [01:00:08]: test sim4db-unit-test: - - - - - - - - - - results - - - - - - - - - - 70s sim4db-unit-test PASS 70s autopkgtest [01:00:08]: test atac-unit-test: preparing testbed 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Solving dependencies... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s autopkgtest [01:00:10]: test atac-unit-test: [----------------------- 72s Rewriting '/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/GCF_000195855.1_ASM19585v1_genomic.fna' to '/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.fasta', removing newlines. 72s Rewriting '/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/GCF_000195955.2_ASM19595v2_genomic.fna' to '/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.fasta', removing newlines. 72s 72s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.fasta -o /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.ms20 72s 73s 73s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.ms20 -o /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.ms20.le1 73s 74s 74s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.fasta -o /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.ms20 74s 75s 75s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.ms20 -o /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.ms20.le1 75s 75s Finding the min count between Lepr.ms20.le1 and Tuber.ms20.le1. 75s 75s /usr/bin/meryl -M min -s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.ms20.le1 -s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.ms20.le1 -o /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 75s 75s includeSize is proportional to 1048608. 75s excludeSize is proportional to 15724920. 75s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 has 33265 mers. 75s /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.ms20 has 3268184 mers. 75s includeSize is exactly 33265 mers. 75s excludeSize is exactly 3234919 mers. 75s 75s /usr/bin/../lib/atac/bin/seatac -verbose -mersize 20 -minlength 20 -maxgap 0 -numthreads 4 -table /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.fasta -stream /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.fasta -only /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.include -output /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches -filtername /usr/bin/../lib/atac/lib/filter-heavychains.so -filteropts "-1 Lepr -2 Tuber -S 100 -J 100000" > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber-000.out 2>&1 75s 76s 76s /usr/bin/../lib/atac/bin/matchExtender /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.header /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 76s 76s WARNING: TMPDIR not set, defaulting to '/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results'. 76s 76s python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 76s 76s Read checkpoint in 0 seconds. 76s Creating /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Lepr.fasta.idxStore 76s Creating /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/meryldir/Tuber.fasta.idxStore 76s We need to make the raw matches. 76s runName = /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 76s 76s Keep step=0 76s At step=0 76s Time elapsed=0.00015163421630859375 76s At uniqueFilter, step=1 76s Time elapsed=0.00015807151794433594 76s Running UniqueFilter 76s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/tmpeae4qq9u > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/tmpeq3zicjo 76s time elapsed is 0.0028769969940185547 76s time elapsed is 3.0994415283203125e-05 77s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/tmpma_ywmzn > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/tmp2gxv3fi0 77s time elapsed is 0.0019268989562988281 77s time elapsed is 3.3855438232421875e-05 77s At filterByMatchLength, step=2 77s Time elapsed=0.12375903129577637 77s Running filterByMatchLength 77s At trimMatchOverlaps, step=3 77s Time elapsed=0.12393331527709961 77s Start trimming for bp one-to-one-ness 77s trimMatchOverlapsInX: 77s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 77s 77s trimMatchOverlapsInY: 77s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 77s 77s Finished trimming for bp one-to-one-ness 77s At formPerfectRuns, step=4 77s Time elapsed=0.14910459518432617 77s from /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim making /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 77s formPerfectRuns step=0 77s formPerfectRuns step=1 77s formPerfectRuns step=2 77s formPerfectRuns step=3 77s At onlyKeepLongRuns, step=5 77s Time elapsed=0.1723315715789795 77s from /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 making /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100 77s At formPerfectRuns, step=6 77s Time elapsed=0.17255377769470215 77s Heal the perfect runs 77s formPerfectRuns step=0 77s formPerfectRuns step=1 77s formPerfectRuns step=2 77s formPerfectRuns step=3 77s At squeezeIntraRunGaps, step=7 77s Time elapsed=0.19721484184265137 77s from /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr to /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr.sq 77s countLines 0 inter_run_gap_count 0 closed_gap_count 0 squeezed 0 x_len 0 y_len 0 x_nonACGT 0 y_nonACGT 0 77s theIsolatedSNPcount = 0 77s completefillednotXY = 0 77s completefilledXnotY = 0 77s completefilledYnotX = 0 77s completefilledXandY = 0 77s At TrimMatchOverlaps, step=8 77s Time elapsed=0.19748544692993164 77s Start trimming for bp one-to-one-ness 77s trimMatchOverlapsInX: 77s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 77s 77s trimMatchOverlapsInY: 77s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 77s 77s Finished trimming for bp one-to-one-ness 77s At RunsAsMatches, step=9 77s Time elapsed=0.22192859649658203 77s At fillIntraRunGaps, step=10 77s Time elapsed=0.2221224308013916 77s fill the intrarun gaps 77s begin 77s countLines=0 77s countLines 0 inter_run_gap_count 0 77s At TrimMatchOverlaps, step=11 77s Time elapsed=0.22234082221984863 77s trim the overlaps 77s trimMatchOverlapsInX: 77s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 77s 77s trimMatchOverlapsInY: 77s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 77s 77s Ran in 0 seconds. 77s 77s /usr/bin/../lib/atac/bin/correctGaps -m /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.atac -l /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.log > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.atac 77s 77s 77s cd /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -1 -f /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.ref=Lepr.clumpCost=5000.atac 77s 77s 1 load the matches 77s 2 sort the matches 77s 3 score the matches 77s 4 mark clumps 77s 5 sort the matches 77s 6 output matches with clumps 77s 77s cd /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -2 -f /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.ref=Tuber.clumpCost=5000.atac 77s 77s 1 load the matches 77s 2 sort the matches 77s 3 score the matches 77s 4 mark clumps 77s 5 sort the matches 77s 6 output matches with clumps 77s 77s /usr/bin/../lib/atac/bin/statsGenerator -a /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.atac -p /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/stats/LeprvsTuber -g A > /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/stats/LeprvsTuber.stats 77s 77s 77s perl /usr/bin/../lib/atac/bin/makeplot.pl u /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/stats/LeprvsTuber.matches.png 77s 77s 77s replot 77s ^ 77s "/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/stats/LeprvsTuber.matches.gp" line 24: no previous plot 77s 77s 77s perl /usr/bin/../lib/atac/bin/makeplot.pl r /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/stats/LeprvsTuber.runs.png 77s 77s 77s replot 77s ^ 77s "/tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/stats/LeprvsTuber.runs.gp" line 24: no previous plot 77s 77s 77s Finished! Output is: 77s matches and runs -- /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.atac 77s clumps -- /tmp/autopkgtest.Tfuesv/autopkgtest_tmp/results/LeprvsTuber.*clump*.atac 77s RESULTS: OK 77s 77s autopkgtest [01:00:15]: test atac-unit-test: -----------------------] 78s autopkgtest [01:00:16]: test atac-unit-test: - - - - - - - - - - results - - - - - - - - - - 78s atac-unit-test PASS 78s autopkgtest [01:00:16]: @@@@@@@@@@@@@@@@@@@@ summary 78s sim4db-unit-test PASS 78s atac-unit-test PASS