0s autopkgtest [20:27:16]: starting date and time: 2025-10-20 20:27:16+0000 0s autopkgtest [20:27:16]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:27:16]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v9m59vgq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade kineticstools --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu4-ram16-disk100-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-3.secgroup --name adt-resolute-amd64-kineticstools-20251020-202716-juju-7f2275-prod-proposed-migration-environment-15-345f7343-44d0-46d7-850d-9a28da6e8a00 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-kineticstools-20251020-202716-juju-7f2275-prod-proposed-migration-environment-15-345f7343-44d0-46d7-850d-9a28da6e8a00 from image adt/ubuntu-resolute-amd64-server-20251020.img (UUID 058eb65a-2f1f-4603-be3f-91b3fbc0088c)... 32s autopkgtest [20:27:48]: testbed dpkg architecture: amd64 32s autopkgtest [20:27:48]: testbed apt version: 3.1.8ubuntu1 32s autopkgtest [20:27:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 32s autopkgtest [20:27:48]: testbed release detected to be: None 33s autopkgtest [20:27:49]: updating testbed package index (apt update) 33s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 33s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 33s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 33s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 33s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.3 kB] 33s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 33s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [14.3 kB] 34s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [646 kB] 34s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [71.7 kB] 34s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [120 kB] 34s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 34s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 34s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [418 kB] 34s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [200 kB] 34s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [2772 B] 34s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [5972 B] 34s Fetched 1658 kB in 1s (1174 kB/s) 35s Reading package lists... 35s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 35s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 35s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 35s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 36s Reading package lists... 36s Reading package lists... 36s Building dependency tree... 36s Reading state information... 36s Calculating upgrade... 36s The following packages will be upgraded: 36s libbrotli1 libjson-c5 python3-inflect python3-oauthlib python3-zipp 36s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 36s Need to get 510 kB of archives. 36s After this operation, 27.6 kB of additional disk space will be used. 36s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libjson-c5 amd64 0.18+ds-1.1 [37.7 kB] 36s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.1.0-2build6 [334 kB] 36s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-inflect all 7.5.0-1 [33.9 kB] 36s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-oauthlib all 3.3.1-1 [93.5 kB] 36s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-zipp all 3.23.0-1 [10.4 kB] 36s dpkg-preconfigure: unable to re-open stdin: No such file or directory 36s Fetched 510 kB in 0s (0 B/s) 37s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78444 files and directories currently installed.) 37s Preparing to unpack .../libjson-c5_0.18+ds-1.1_amd64.deb ... 37s Unpacking libjson-c5:amd64 (0.18+ds-1.1) over (0.18+ds-1) ... 37s Preparing to unpack .../libbrotli1_1.1.0-2build6_amd64.deb ... 37s Unpacking libbrotli1:amd64 (1.1.0-2build6) over (1.1.0-2build5) ... 37s Preparing to unpack .../python3-inflect_7.5.0-1_all.deb ... 37s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 37s Preparing to unpack .../python3-oauthlib_3.3.1-1_all.deb ... 37s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 37s Preparing to unpack .../python3-zipp_3.23.0-1_all.deb ... 37s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 37s Setting up libbrotli1:amd64 (1.1.0-2build6) ... 37s Setting up python3-zipp (3.23.0-1) ... 37s Setting up python3-inflect (7.5.0-1) ... 37s Setting up python3-oauthlib (3.3.1-1) ... 37s Setting up libjson-c5:amd64 (0.18+ds-1.1) ... 37s Processing triggers for libc-bin (2.42-0ubuntu3) ... 37s autopkgtest [20:27:53]: upgrading testbed (apt dist-upgrade and autopurge) 37s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Calculating upgrade... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Solving dependencies... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 40s autopkgtest [20:27:56]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 40s autopkgtest [20:27:56]: @@@@@@@@@@@@@@@@@@@@ apt-source kineticstools 43s Get:1 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (dsc) [2783 B] 43s Get:2 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (tar) [21.8 MB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (diff) [11.1 kB] 43s gpgv: Signature made Sun Feb 9 11:20:52 2025 UTC 43s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 43s gpgv: issuer "tchet@debian.org" 43s gpgv: Can't check signature: No public key 43s dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-6.dsc: no acceptable signature found 43s autopkgtest [20:27:59]: testing package kineticstools version 0.6.1+git20220223.1326a4d+dfsg-6 43s autopkgtest [20:27:59]: build not needed 47s autopkgtest [20:28:03]: test command1: preparing testbed 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Solving dependencies... 47s The following NEW packages will be installed: 47s fontconfig-config fonts-urw-base35 hdf5-tools kineticstools 47s kineticstools-data libaec0 libbigwig0t64 libblas3 libcairo2 libdeflate0 47s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 47s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 47s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 47s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 47s libjs-jquery-tablesorter libjs-jquery-throttle-debounce liblapack3 47s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libsz2 47s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 47s libxrender1 python3-avro python3-biopython python3-cairo 47s python3-charset-normalizer python3-coverage python3-cram python3-decorator 47s python3-execnet python3-freetype python3-iniconfig python3-iso8601 47s python3-kineticstools python3-numpy python3-numpy-dev python3-packaging 47s python3-pbcommand python3-pbcore python3-pil python3-pluggy python3-pybigwig 47s python3-pysam python3-pytest python3-pytest-cov python3-pytest-xdist 47s python3-pytz python3-reportlab python3-rlpycairo python3-scipy python3-tz 47s sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 47s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. 47s Need to get 78.1 MB of archives. 47s After this operation, 243 MB of additional disk space will be used. 47s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 47s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 47s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 48s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 48s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 49s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 49s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 49s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 49s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 49s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 49s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 49s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 49s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 49s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 49s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 49s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 hdf5-tools amd64 1.14.5+repack-3build1 [386 kB] 49s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-iso8601 all 2.1.0-2 [9136 B] 49s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-3 [163 kB] 49s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tz all 2025.2-3 [1866 B] 49s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-avro all 1.12.0+dfsg-1 [75.3 kB] 49s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pbcommand all 2.1.1+git20231020.28d1635-1 [104 kB] 49s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.2-1 [129 kB] 49s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 49s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 49s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 49s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 49s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 49s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 49s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 49s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 49s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 49s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 49s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 49s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 49s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 49s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 49s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 49s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 49s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 49s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu1 [496 kB] 49s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 49s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 49s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 49s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 49s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 49s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 49s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 49s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 49s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 49s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.2-1 [1145 kB] 49s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 49s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19 [20.3 kB] 49s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 49s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.85+dfsg-4 [1719 kB] 49s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 49s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB] 49s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pysam amd64 0.23.0+ds-1build1 [3966 kB] 50s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pbcore all 2.1.2+dfsg-11 [2837 kB] 50s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1build2 [30.2 kB] 50s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pybigwig amd64 0.3.23+dfsg-1build3 [41.1 kB] 50s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 50s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1 [16.6 MB] 50s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 kineticstools-data all 0.6.1+git20220223.1326a4d+dfsg-6 [21.7 MB] 50s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kineticstools amd64 0.6.1+git20220223.1326a4d+dfsg-6 [47.7 kB] 50s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 kineticstools all 0.6.1+git20220223.1326a4d+dfsg-6 [12.9 kB] 50s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 50s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 50s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 50s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 50s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coverage amd64 7.8.2+dfsg1-1 [157 kB] 50s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cram all 0.7-6 [17.8 kB] 50s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] 50s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 50s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 50s Get:75 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 50s Get:76 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pytest all 8.4.2-1 [268 kB] 50s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-hotkeys all 0.2.0-1 [13.3 kB] 50s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 50s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 50s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 51s Fetched 78.1 MB in 3s (23.0 MB/s) 51s Selecting previously unselected package python3-numpy-dev:amd64. 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78454 files and directories currently installed.) 51s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 51s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 51s Selecting previously unselected package libblas3:amd64. 51s Preparing to unpack .../01-libblas3_3.12.1-6build1_amd64.deb ... 51s Unpacking libblas3:amd64 (3.12.1-6build1) ... 51s Selecting previously unselected package libgfortran5:amd64. 51s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package liblapack3:amd64. 51s Preparing to unpack .../03-liblapack3_3.12.1-6build1_amd64.deb ... 51s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 51s Selecting previously unselected package python3-numpy. 51s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 51s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 51s Selecting previously unselected package libfontenc1:amd64. 51s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 51s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 51s Selecting previously unselected package x11-common. 51s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 51s Unpacking x11-common (1:7.7+24ubuntu1) ... 51s Selecting previously unselected package xfonts-encodings. 51s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 51s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 51s Selecting previously unselected package xfonts-utils. 51s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_amd64.deb ... 51s Unpacking xfonts-utils (1:7.7+7) ... 51s Selecting previously unselected package fonts-urw-base35. 51s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 51s Unpacking fonts-urw-base35 (20200910-8) ... 51s Selecting previously unselected package fontconfig-config. 51s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 51s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 51s Selecting previously unselected package libaec0:amd64. 51s Preparing to unpack .../11-libaec0_1.1.3-1_amd64.deb ... 51s Unpacking libaec0:amd64 (1.1.3-1) ... 51s Selecting previously unselected package libsz2:amd64. 51s Preparing to unpack .../12-libsz2_1.1.3-1_amd64.deb ... 51s Unpacking libsz2:amd64 (1.1.3-1) ... 51s Selecting previously unselected package libhdf5-310:amd64. 51s Preparing to unpack .../13-libhdf5-310_1.14.5+repack-3build1_amd64.deb ... 51s Unpacking libhdf5-310:amd64 (1.14.5+repack-3build1) ... 51s Selecting previously unselected package libhdf5-hl-310:amd64. 51s Preparing to unpack .../14-libhdf5-hl-310_1.14.5+repack-3build1_amd64.deb ... 51s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 51s Selecting previously unselected package hdf5-tools. 51s Preparing to unpack .../15-hdf5-tools_1.14.5+repack-3build1_amd64.deb ... 51s Unpacking hdf5-tools (1.14.5+repack-3build1) ... 51s Selecting previously unselected package python3-iso8601. 51s Preparing to unpack .../16-python3-iso8601_2.1.0-2_all.deb ... 51s Unpacking python3-iso8601 (2.1.0-2) ... 51s Selecting previously unselected package python3-pytz. 51s Preparing to unpack .../17-python3-pytz_2025.2-3_all.deb ... 51s Unpacking python3-pytz (2025.2-3) ... 51s Selecting previously unselected package python3-tz. 51s Preparing to unpack .../18-python3-tz_2025.2-3_all.deb ... 51s Unpacking python3-tz (2025.2-3) ... 51s Selecting previously unselected package python3-avro. 51s Preparing to unpack .../19-python3-avro_1.12.0+dfsg-1_all.deb ... 51s Unpacking python3-avro (1.12.0+dfsg-1) ... 51s Selecting previously unselected package python3-pbcommand. 51s Preparing to unpack .../20-python3-pbcommand_2.1.1+git20231020.28d1635-1_all.deb ... 51s Unpacking python3-pbcommand (2.1.1+git20231020.28d1635-1) ... 51s Selecting previously unselected package python3-charset-normalizer. 51s Preparing to unpack .../21-python3-charset-normalizer_3.4.2-1_amd64.deb ... 51s Unpacking python3-charset-normalizer (3.4.2-1) ... 51s Selecting previously unselected package libgomp1:amd64. 51s Preparing to unpack .../22-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package libimagequant0:amd64. 51s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_amd64.deb ... 51s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 51s Selecting previously unselected package libjpeg-turbo8:amd64. 51s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 51s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 51s Selecting previously unselected package libjpeg8:amd64. 51s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_amd64.deb ... 51s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 51s Selecting previously unselected package liblcms2-2:amd64. 51s Preparing to unpack .../26-liblcms2-2_2.16-2_amd64.deb ... 51s Unpacking liblcms2-2:amd64 (2.16-2) ... 51s Selecting previously unselected package libopenjp2-7:amd64. 51s Preparing to unpack .../27-libopenjp2-7_2.5.3-2.1_amd64.deb ... 51s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 51s Selecting previously unselected package libgraphite2-3:amd64. 51s Preparing to unpack .../28-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 51s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 51s Selecting previously unselected package libharfbuzz0b:amd64. 51s 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Selecting previously unselected package libwebp7:amd64. 51s Preparing to unpack .../35-libwebp7_1.5.0-0.1_amd64.deb ... 51s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package libtiff6:amd64. 51s Preparing to unpack .../36-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 51s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 51s Selecting previously unselected package libwebpdemux2:amd64. 51s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_amd64.deb ... 51s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package libwebpmux3:amd64. 51s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_amd64.deb ... 51s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package python3-pil:amd64. 51s Preparing to unpack .../39-python3-pil_11.3.0-1ubuntu1_amd64.deb ... 51s Unpacking python3-pil:amd64 (11.3.0-1ubuntu1) ... 51s Selecting previously unselected package libfontconfig1:amd64. 51s Preparing to unpack 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Unpacking libcairo2:amd64 (1.18.4-1build1) ... 52s Selecting previously unselected package python3-cairo. 52s Preparing to unpack .../46-python3-cairo_1.27.0-2build1_amd64.deb ... 52s Unpacking python3-cairo (1.27.0-2build1) ... 52s Selecting previously unselected package python3-freetype. 52s Preparing to unpack .../47-python3-freetype_2.5.1-1_all.deb ... 52s Unpacking python3-freetype (2.5.1-1) ... 52s Selecting previously unselected package python3-rlpycairo. 52s Preparing to unpack .../48-python3-rlpycairo_0.3.0-3_all.deb ... 52s Unpacking python3-rlpycairo (0.3.0-3) ... 52s Selecting previously unselected package python3-reportlab. 52s Preparing to unpack .../49-python3-reportlab_4.4.2-1_all.deb ... 52s Unpacking python3-reportlab (4.4.2-1) ... 52s Selecting previously unselected package sgml-base. 52s Preparing to unpack .../50-sgml-base_1.31+nmu1_all.deb ... 52s Unpacking sgml-base (1.31+nmu1) ... 52s Selecting previously unselected package xml-core. 52s Preparing to unpack .../51-xml-core_0.19_all.deb ... 52s Unpacking xml-core (0.19) ... 52s Selecting previously unselected package w3c-sgml-lib. 52s Preparing to unpack .../52-w3c-sgml-lib_1.3-3_all.deb ... 52s Unpacking w3c-sgml-lib (1.3-3) ... 52s Selecting previously unselected package python3-biopython. 52s Preparing to unpack .../53-python3-biopython_1.85+dfsg-4_amd64.deb ... 52s Unpacking python3-biopython (1.85+dfsg-4) ... 52s Selecting previously unselected package libhtscodecs2:amd64. 52s Preparing to unpack .../54-libhtscodecs2_1.6.1-2_amd64.deb ... 52s Unpacking libhtscodecs2:amd64 (1.6.1-2) ... 52s Selecting previously unselected package libhts3t64:amd64. 52s Preparing to unpack .../55-libhts3t64_1.21+ds-1_amd64.deb ... 52s Unpacking libhts3t64:amd64 (1.21+ds-1) ... 52s Selecting previously unselected package python3-pysam. 52s Preparing to unpack .../56-python3-pysam_0.23.0+ds-1build1_amd64.deb ... 52s Unpacking python3-pysam (0.23.0+ds-1build1) ... 52s Selecting previously unselected package python3-pbcore. 52s Preparing to unpack .../57-python3-pbcore_2.1.2+dfsg-11_all.deb ... 52s Unpacking python3-pbcore (2.1.2+dfsg-11) ... 52s Selecting previously unselected package libbigwig0t64:amd64. 52s Preparing to unpack .../58-libbigwig0t64_0.4.7+dfsg-3.1build2_amd64.deb ... 52s Unpacking libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 52s Selecting previously unselected package python3-pybigwig. 52s Preparing to unpack .../59-python3-pybigwig_0.3.23+dfsg-1build3_amd64.deb ... 52s Unpacking python3-pybigwig (0.3.23+dfsg-1build3) ... 52s Selecting previously unselected package python3-decorator. 52s Preparing to unpack .../60-python3-decorator_5.2.1-2_all.deb ... 52s Unpacking python3-decorator (5.2.1-2) ... 52s Selecting previously unselected package python3-scipy. 52s Preparing to unpack .../61-python3-scipy_1.15.3-1_amd64.deb ... 52s Unpacking python3-scipy (1.15.3-1) ... 52s Selecting previously unselected package kineticstools-data. 52s Preparing to unpack .../62-kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-6_all.deb ... 52s Unpacking kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) ... 52s Selecting previously unselected package python3-kineticstools. 52s Preparing to unpack .../63-python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-6_amd64.deb ... 52s Unpacking python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 52s Selecting previously unselected package kineticstools. 52s Preparing to unpack .../64-kineticstools_0.6.1+git20220223.1326a4d+dfsg-6_all.deb ... 52s Unpacking kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 52s Selecting previously unselected package libjs-jquery. 52s Preparing to unpack .../65-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 52s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 52s Selecting previously unselected package libjs-jquery-metadata. 52s Preparing to unpack .../66-libjs-jquery-metadata_12-4_all.deb ... 52s Unpacking libjs-jquery-metadata (12-4) ... 52s Selecting previously 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python3-iniconfig. 52s Preparing to unpack .../72-python3-iniconfig_1.1.1-2_all.deb ... 52s Unpacking python3-iniconfig (1.1.1-2) ... 52s Selecting previously unselected package python3-packaging. 52s Preparing to unpack .../73-python3-packaging_25.0-1_all.deb ... 52s Unpacking python3-packaging (25.0-1) ... 52s Selecting previously unselected package python3-pluggy. 52s Preparing to unpack .../74-python3-pluggy_1.6.0-1_all.deb ... 52s Unpacking python3-pluggy (1.6.0-1) ... 52s Selecting previously unselected package python3-pytest. 52s Preparing to unpack .../75-python3-pytest_8.4.2-1_all.deb ... 52s Unpacking python3-pytest (8.4.2-1) ... 52s Selecting previously unselected package libjs-jquery-hotkeys. 52s Preparing to unpack .../76-libjs-jquery-hotkeys_0.2.0-1_all.deb ... 52s Unpacking libjs-jquery-hotkeys (0.2.0-1) ... 52s Selecting previously unselected package libjs-jquery-isonscreen. 52s Preparing to unpack .../77-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 52s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 52s Selecting previously unselected package python3-pytest-cov. 52s Preparing to unpack .../78-python3-pytest-cov_5.0.0-1_all.deb ... 52s Unpacking python3-pytest-cov (5.0.0-1) ... 52s Selecting previously unselected package python3-pytest-xdist. 52s Preparing to unpack .../79-python3-pytest-xdist_3.6.1-1_all.deb ... 52s Unpacking python3-pytest-xdist (3.6.1-1) ... 52s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 52s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 52s Setting up liblcms2-2:amd64 (2.16-2) ... 52s Setting up python3-iniconfig (1.1.1-2) ... 52s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 52s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 52s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 52s Setting up libxrender1:amd64 (1:0.9.12-1) ... 52s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 52s Setting up python3-charset-normalizer (3.4.2-1) ... 52s Setting up x11-common (1:7.7+24ubuntu1) ... 53s Setting up libdeflate0:amd64 (1.23-2) ... 53s Setting up python3-coverage (7.8.2+dfsg1-1) ... 53s Setting up python3-pytz (2025.2-3) ... 53s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 53s Setting up kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) ... 53s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 53s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 53s Setting up python3-freetype (2.5.1-1) ... 53s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 53s Setting up libaec0:amd64 (1.1.3-1) ... 53s Setting up python3-tz (2025.2-3) ... 53s Setting up python3-decorator (5.2.1-2) ... 53s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 53s Setting up libblas3:amd64 (3.12.1-6build1) ... 53s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 53s Setting up python3-packaging (25.0-1) ... 53s Setting up python3-iso8601 (2.1.0-2) ... 53s Setting up python3-avro (1.12.0+dfsg-1) ... 53s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 53s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 53s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 53s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 53s Setting up libgfortran5:amd64 (15.2.0-5ubuntu1) ... 53s Setting up python3-pluggy (1.6.0-1) ... 53s Setting up libwebp7:amd64 (1.5.0-0.1) ... 53s Setting up python3-cram (0.7-6) ... 53s Setting up libhts3t64:amd64 (1.21+ds-1) ... 53s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 53s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 53s Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 53s Setting up sgml-base (1.31+nmu1) ... 53s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 53s Setting up libjs-jquery-hotkeys (0.2.0-1) ... 53s Setting up python3-execnet (2.1.1-1) ... 53s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 53s Setting up libsz2:amd64 (1.1.3-1) ... 53s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 53s Setting up liblapack3:amd64 (3.12.1-6build1) ... 53s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 53s Setting up python3-pysam (0.23.0+ds-1build1) ... 53s Setting up python3-pytest (8.4.2-1) ... 54s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 54s Setting up xfonts-utils (1:7.7+7) ... 54s Setting up libjs-jquery-metadata (12-4) ... 54s Setting up libraqm0:amd64 (0.10.3-1) ... 54s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 54s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 55s Setting up python3-pybigwig (0.3.23+dfsg-1build3) ... 55s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 55s Setting up libhdf5-310:amd64 (1.14.5+repack-3build1) ... 55s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 55s Setting up xml-core (0.19) ... 55s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 55s Setting up python3-scipy (1.15.3-1) ... 57s Setting up python3-pytest-xdist (3.6.1-1) ... 57s Setting up python3-pytest-cov (5.0.0-1) ... 57s Setting up fonts-urw-base35 (20200910-8) ... 57s Setting up hdf5-tools (1.14.5+repack-3build1) ... 57s Setting up python3-pil:amd64 (11.3.0-1ubuntu1) ... 57s Setting up python3-pbcommand (2.1.1+git20231020.28d1635-1) ... 57s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 57s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 57s Setting up libcairo2:amd64 (1.18.4-1build1) ... 57s Setting up python3-cairo (1.27.0-2build1) ... 58s Setting up python3-rlpycairo (0.3.0-3) ... 58s Setting up python3-reportlab (4.4.2-1) ... 58s Processing triggers for libc-bin (2.42-0ubuntu3) ... 58s Processing triggers for man-db (2.13.1-1) ... 59s Processing triggers for sgml-base (1.31+nmu1) ... 59s Setting up w3c-sgml-lib (1.3-3) ... 74s Setting up python3-biopython (1.85+dfsg-4) ... 75s Setting up python3-pbcore (2.1.2+dfsg-11) ... 75s Setting up python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 75s Setting up kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 76s autopkgtest [20:28:32]: test command1: cp -r Makefile test $AUTOPKGTEST_TMP/ && cd $AUTOPKGTEST_TMP && ln -s /usr/share/kineticstools kineticsTools && make -k py-tests 76s autopkgtest [20:28:32]: test command1: [----------------------- 76s # pytest --cov=kineticsTools # does not quite work since we run in test/ dir. 76s cd test/; pytest-3 -s -v -p no:warnings --durations=20 --junitxml=../nosetests.xml test_*.py 76s ============================= test session starts ============================== 76s platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3 76s cachedir: .pytest_cache 76s rootdir: /tmp/autopkgtest.chyNuP/autopkgtest_tmp/test 76s plugins: cov-5.0.0, typeguard-4.4.2, xdist-3.6.1 76s collecting ... /tmp/autopkgtest.chyNuP/autopkgtest_tmp/test/test_ReferenceUtils.py:17: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 76s @pytest.mark.internal_data 76s /tmp/autopkgtest.chyNuP/autopkgtest_tmp/test/test_gather_bigwig.py:50: PytestUnknownMarkWarning: Unknown pytest.mark.pybigwig - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 76s @pytest.mark.pybigwig 76s /tmp/autopkgtest.chyNuP/autopkgtest_tmp/test/test_integration.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 76s @pytest.mark.internal_data 76s /tmp/autopkgtest.chyNuP/autopkgtest_tmp/test/test_ipdModel.py:13: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 76s @pytest.mark.internal_data 76s collected 19 items 76s 76s test_ReferenceUtils.py::TestReferenceUtils::test_bam SKIPPED (need a...)/tmp/autopkgtest.chyNuP/autopkgtest_tmp/test/test_outputs.py:21: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 76s @pytest.mark.internal_data 76s /tmp/autopkgtest.chyNuP/autopkgtest_tmp/test/test_summarize_modifications.py:12: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 76s @pytest.mark.internal_data 76s 76s test_ReferenceUtils.py::TestReferenceUtils::test_dataset SKIPPED (ne...) 76s test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow SKIPPED 76s test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows SKIPPED 76s test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks SKIPPED 76s test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig PASSED 77s test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli PASSED 77s test_integration.py::TestKineticsTools::test_help PASSED 77s test_integration.py::TestKineticsTools::test_ecoli_first_50k SKIPPED 77s test_ipdModel.py::TestIpdModel::test_refLength SKIPPED (need access ...) 77s test_ipdModel.py::TestIpdModel::test_snippetFunc SKIPPED (need acces...) 77s test_ipdModel.py::TestIpdModel::test_getReferenceWindow SKIPPED (nee...) 77s test_loader.py::test_basic PASSED 77s test_loader.py::test_path PASSED 77s test_loader.py::test_path_with_prefixed_chem PASSED 77s test_loader.py::test_getResourcePathSpec PASSED 77s test_outputs.py::TestOutputs::test_csv_output SKIPPED (need access t...) 77s test_outputs.py::TestOutputs::test_bigwig SKIPPED (missing bw_file, ...) 77s test_summarize_modifications.py::TestSummarizeModifications::test_integration SKIPPED 77s 77s -- generated xml file: /tmp/autopkgtest.chyNuP/autopkgtest_tmp/nosetests.xml --- 77s ============================= slowest 20 durations ============================= 77s 0.37s call test_integration.py::TestKineticsTools::test_help 77s 0.10s call test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 77s 0.03s setup test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 77s 77s (17 durations < 0.005s hidden. Use -vv to show these durations.) 77s ======================== 7 passed, 12 skipped in 0.60s ========================= 77s autopkgtest [20:28:33]: test command1: -----------------------] 78s command1 PASS 78s autopkgtest [20:28:34]: test command1: - - - - - - - - - - results - - - - - - - - - - 78s autopkgtest [20:28:34]: @@@@@@@@@@@@@@@@@@@@ summary 78s command1 PASS