0s autopkgtest [16:55:36]: starting date and time: 2025-11-17 16:55:36+0000 0s autopkgtest [16:55:36]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [16:55:36]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wyd9xrw8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hmmer --apt-upgrade hmmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=hmmer/3.4+dfsg-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-7.secgroup --name adt-resolute-amd64-hmmer-20251117-165536-juju-7f2275-prod-proposed-migration-environment-15-f81c6aae-dbbc-456d-8340-ea876ff0f51a --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-hmmer-20251117-165536-juju-7f2275-prod-proposed-migration-environment-15-f81c6aae-dbbc-456d-8340-ea876ff0f51a from image adt/ubuntu-resolute-amd64-server-20251117.img (UUID 9762b0cc-7c5b-4854-acd5-cc74ad0de8c6)... 41s autopkgtest [16:56:17]: testbed dpkg architecture: amd64 41s autopkgtest [16:56:17]: testbed apt version: 3.1.11 41s autopkgtest [16:56:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 42s autopkgtest [16:56:18]: testbed release detected to be: None 42s autopkgtest [16:56:18]: updating testbed package index (apt update) 42s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 43s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 43s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 43s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 43s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9852 B] 43s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [779 kB] 43s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [73.2 kB] 43s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 43s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [113 kB] 43s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [153 kB] 43s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3236 B] 43s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 43s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 43s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 43s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [543 kB] 43s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [254 kB] 43s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [20.1 kB] 44s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.4 kB] 44s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [6516 B] 44s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [680 B] 45s Fetched 2149 kB in 1s (1872 kB/s) 45s Reading package lists... 46s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 46s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 46s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 46s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 47s Reading package lists... 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Calculating upgrade... 47s The following packages will be upgraded: 47s apt libapt-pkg7.0 libcrypt-dev libcrypt1 libunwind8 usbutils 47s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 47s Need to get 2978 kB of archives. 47s After this operation, 46.1 kB of additional disk space will be used. 47s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 47s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt1 amd64 1:4.5.1-1 [90.7 kB] 47s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.12 [1148 kB] 47s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.12 [1474 kB] 47s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 usbutils amd64 1:019-1 [83.9 kB] 47s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libunwind8 amd64 1.8.3-0ubuntu1 [59.6 kB] 47s dpkg-preconfigure: unable to re-open stdin: No such file or directory 47s Fetched 2978 kB in 0s (7394 kB/s) 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 48s Preparing to unpack .../libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 48s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) over (1:4.4.38-1build1) ... 48s Preparing to unpack .../libcrypt1_1%3a4.5.1-1_amd64.deb ... 48s Unpacking libcrypt1:amd64 (1:4.5.1-1) over (1:4.4.38-1build1) ... 48s Setting up libcrypt1:amd64 (1:4.5.1-1) ... 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 48s Preparing to unpack .../libapt-pkg7.0_3.1.12_amd64.deb ... 48s Unpacking libapt-pkg7.0:amd64 (3.1.12) over (3.1.11) ... 48s Preparing to unpack .../archives/apt_3.1.12_amd64.deb ... 48s Unpacking apt (3.1.12) over (3.1.11) ... 48s Preparing to unpack .../usbutils_1%3a019-1_amd64.deb ... 48s Unpacking usbutils (1:019-1) over (1:018-2) ... 48s Preparing to unpack .../libunwind8_1.8.3-0ubuntu1_amd64.deb ... 48s Unpacking libunwind8:amd64 (1.8.3-0ubuntu1) over (1.8.1-0.1ubuntu1) ... 48s Setting up libunwind8:amd64 (1.8.3-0ubuntu1) ... 48s Setting up usbutils (1:019-1) ... 48s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ... 48s Setting up libapt-pkg7.0:amd64 (3.1.12) ... 48s Setting up apt (3.1.12) ... 48s Processing triggers for man-db (2.13.1-1) ... 49s Processing triggers for libc-bin (2.42-2ubuntu2) ... 49s autopkgtest [16:56:25]: upgrading testbed (apt dist-upgrade and autopurge) 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s Calculating upgrade... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Solving dependencies... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s autopkgtest [16:56:27]: rebooting testbed after setup commands that affected boot 81s autopkgtest [16:56:57]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 83s autopkgtest [16:56:59]: @@@@@@@@@@@@@@@@@@@@ apt-source hmmer 85s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe hmmer 3.4+dfsg-3 (dsc) [1774 B] 85s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/universe hmmer 3.4+dfsg-3 (tar) [13.3 MB] 85s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/universe hmmer 3.4+dfsg-3 (diff) [13.0 kB] 85s gpgv: Signature made Mon Sep 29 12:51:38 2025 UTC 85s gpgv: using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32 85s gpgv: Can't check signature: No public key 85s dpkg-source: warning: cannot verify inline signature for ./hmmer_3.4+dfsg-3.dsc: no acceptable signature found 86s autopkgtest [16:57:02]: testing package hmmer version 3.4+dfsg-3 86s autopkgtest [16:57:02]: build not needed 89s autopkgtest [16:57:05]: test run-unit-test: preparing testbed 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Solving dependencies... 89s The following NEW packages will be installed: 89s hmmer hmmer-doc hmmer-examples libdivsufsort3 libperl4-corelibs-perl 90s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 36.0 MB of archives. 90s After this operation, 44.3 MB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 hmmer-doc all 3.4+dfsg-3 [785 kB] 90s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libperl4-corelibs-perl all 0.005-1 [38.1 kB] 90s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 hmmer-examples amd64 3.4+dfsg-3 [34.0 MB] 93s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdivsufsort3 amd64 2.0.1-7 [46.8 kB] 93s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 hmmer amd64 3.4+dfsg-3 [1142 kB] 94s Fetched 36.0 MB in 4s (8973 kB/s) 94s Selecting previously unselected package hmmer-doc. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 94s Preparing to unpack .../hmmer-doc_3.4+dfsg-3_all.deb ... 94s Unpacking hmmer-doc (3.4+dfsg-3) ... 94s Selecting previously unselected package libperl4-corelibs-perl. 94s Preparing to unpack .../libperl4-corelibs-perl_0.005-1_all.deb ... 94s Unpacking libperl4-corelibs-perl (0.005-1) ... 94s Selecting previously unselected package hmmer-examples. 94s Preparing to unpack .../hmmer-examples_3.4+dfsg-3_amd64.deb ... 94s Unpacking hmmer-examples (3.4+dfsg-3) ... 94s Selecting previously unselected package libdivsufsort3:amd64. 94s Preparing to unpack .../libdivsufsort3_2.0.1-7_amd64.deb ... 94s Unpacking libdivsufsort3:amd64 (2.0.1-7) ... 94s Selecting previously unselected package hmmer. 94s Preparing to unpack .../hmmer_3.4+dfsg-3_amd64.deb ... 94s Unpacking hmmer (3.4+dfsg-3) ... 94s Setting up libperl4-corelibs-perl (0.005-1) ... 94s Setting up hmmer-doc (3.4+dfsg-3) ... 94s Setting up hmmer-examples (3.4+dfsg-3) ... 94s Setting up libdivsufsort3:amd64 (2.0.1-7) ... 94s Setting up hmmer (3.4+dfsg-3) ... 94s Processing triggers for man-db (2.13.1-1) ... 94s Processing triggers for libc-bin (2.42-2ubuntu2) ... 95s autopkgtest [16:57:11]: test run-unit-test: [----------------------- 96s easel testsuite 96s sqc: running ./easel/testsuite/testsuite.sqc. 96s exercise 1 [ easel-utest] ... sqc: evaluating line: 1 exercise easel-utest @easel_utest@ 96s sqc: after filename subst, cmd is: ./easel/easel_utest 96s sqc: after output subst, cmd is: ./easel/easel_utest > /dev/null 2> esltmpaa2091.stderr 96s sqc: running cmd: ./easel/easel_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 2 [ alloc-utest] ... sqc: evaluating line: 1 exercise alloc-utest @esl_alloc_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_alloc_utest 97s sqc: after output subst, cmd is: ./easel/esl_alloc_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_alloc_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 3 [ alphabet-utest] ... sqc: evaluating line: 1 exercise alphabet-utest @esl_alphabet_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_alphabet_utest 97s sqc: after output subst, cmd is: ./easel/esl_alphabet_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_alphabet_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 4 [ avx-utest] ... sqc: evaluating line: 1 exercise avx-utest @esl_avx_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_avx_utest 97s sqc: after output subst, cmd is: ./easel/esl_avx_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_avx_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 5 [ avx512-utest] ... sqc: evaluating line: 1 exercise avx512-utest @esl_avx512_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_avx512_utest 97s sqc: after output subst, cmd is: ./easel/esl_avx512_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_avx512_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 6 [ bitfield-utest] ... sqc: evaluating line: 1 exercise bitfield-utest @esl_bitfield_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_bitfield_utest 97s sqc: after output subst, cmd is: ./easel/esl_bitfield_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_bitfield_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 7 [ buffer-utest] ... sqc: evaluating line: 1 exercise buffer-utest @esl_buffer_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_buffer_utest 97s sqc: after output subst, cmd is: ./easel/esl_buffer_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_buffer_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 8 [ cluster-utest] ... sqc: evaluating line: 1 exercise cluster-utest @esl_cluster_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_cluster_utest 97s sqc: after output subst, cmd is: ./easel/esl_cluster_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_cluster_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 9 [ cpu-utest] ... sqc: evaluating line: 1 exercise cpu-utest @esl_cpu_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_cpu_utest 97s sqc: after output subst, cmd is: ./easel/esl_cpu_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_cpu_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 10 [ dirichlet-utest] ... sqc: evaluating line: 1 exercise dirichlet-utest @esl_dirichlet_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_dirichlet_utest 97s sqc: after output subst, cmd is: ./easel/esl_dirichlet_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_dirichlet_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 11 [ distance-utest] ... sqc: evaluating line: 1 exercise distance-utest @esl_distance_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_distance_utest 97s sqc: after output subst, cmd is: ./easel/esl_distance_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_distance_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 12 [ dmatrix-utest] ... sqc: evaluating line: 1 exercise dmatrix-utest @esl_dmatrix_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_dmatrix_utest 97s sqc: after output subst, cmd is: ./easel/esl_dmatrix_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_dmatrix_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 13 [ dsqdata-utest] ... sqc: evaluating line: 1 exercise dsqdata-utest @esl_dsqdata_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_dsqdata_utest 97s sqc: after output subst, cmd is: ./easel/esl_dsqdata_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_dsqdata_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 14 [ exponential-utest] ... sqc: evaluating line: 1 exercise exponential-utest @esl_exponential_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_exponential_utest 97s sqc: after output subst, cmd is: ./easel/esl_exponential_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_exponential_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 15 [ fileparser-utest] ... sqc: evaluating line: 1 exercise fileparser-utest @esl_fileparser_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_fileparser_utest 97s sqc: after output subst, cmd is: ./easel/esl_fileparser_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_fileparser_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 16 [ gamma-utest] ... sqc: evaluating line: 1 exercise gamma-utest @esl_gamma_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_gamma_utest 97s sqc: after output subst, cmd is: ./easel/esl_gamma_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_gamma_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 17 [ gencode-utest] ... sqc: evaluating line: 1 exercise gencode-utest @esl_gencode_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_gencode_utest 97s sqc: after output subst, cmd is: ./easel/esl_gencode_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_gencode_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 18 [ getopts-utest] ... sqc: evaluating line: 1 exercise getopts-utest @esl_getopts_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_getopts_utest 97s sqc: after output subst, cmd is: ./easel/esl_getopts_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_getopts_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 19 [ graph-utest] ... sqc: evaluating line: 1 exercise graph-utest @esl_graph_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_graph_utest 97s sqc: after output subst, cmd is: ./easel/esl_graph_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_graph_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 20 [ gumbel-utest] ... sqc: evaluating line: 1 exercise gumbel-utest @esl_gumbel_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_gumbel_utest 97s sqc: after output subst, cmd is: ./easel/esl_gumbel_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_gumbel_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 21 [ heap-utest] ... sqc: evaluating line: 1 exercise heap-utest @esl_heap_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_heap_utest 97s sqc: after output subst, cmd is: ./easel/esl_heap_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_heap_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 22 [ histogram-utest] ... sqc: evaluating line: 1 exercise histogram-utest @esl_histogram_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_histogram_utest 97s sqc: after output subst, cmd is: ./easel/esl_histogram_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_histogram_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 23 [ huffman-utest] ... sqc: evaluating line: 1 exercise huffman-utest @esl_huffman_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_huffman_utest 97s sqc: after output subst, cmd is: ./easel/esl_huffman_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_huffman_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: return status 0 97s ok. 97s exercise 24 [ hyperexp-utest] ... sqc: evaluating line: 1 exercise hyperexp-utest @esl_hyperexp_utest@ 97s sqc: after filename subst, cmd is: ./easel/esl_hyperexp_utest 97s sqc: after output subst, cmd is: ./easel/esl_hyperexp_utest > /dev/null 2> esltmpaa2091.stderr 97s sqc: running cmd: ./easel/esl_hyperexp_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 25 [ iset-utest] ... sqc: evaluating line: 1 exercise iset-utest @esl_iset_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_iset_utest 98s sqc: after output subst, cmd is: ./easel/esl_iset_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_iset_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 26 [ json-utest] ... sqc: evaluating line: 1 exercise json-utest @esl_json_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_json_utest 98s sqc: after output subst, cmd is: ./easel/esl_json_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_json_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 27 [ keyhash-utest] ... sqc: evaluating line: 1 exercise keyhash-utest @esl_keyhash_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_keyhash_utest 98s sqc: after output subst, cmd is: ./easel/esl_keyhash_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_keyhash_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 28 [ lognormal-utest] ... sqc: evaluating line: 1 exercise lognormal-utest @esl_lognormal_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_lognormal_utest 98s sqc: after output subst, cmd is: ./easel/esl_lognormal_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_lognormal_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 29 [ matrixops-utest] ... sqc: evaluating line: 1 exercise matrixops-utest @esl_matrixops_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_matrixops_utest 98s sqc: after output subst, cmd is: ./easel/esl_matrixops_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_matrixops_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 30 [ mem-utest] ... sqc: evaluating line: 1 exercise mem-utest @esl_mem_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_mem_utest 98s sqc: after output subst, cmd is: ./easel/esl_mem_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_mem_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 31 [ minimizer-utest] ... sqc: evaluating line: 1 exercise minimizer-utest @esl_minimizer_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_minimizer_utest 98s sqc: after output subst, cmd is: ./easel/esl_minimizer_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_minimizer_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: return status 0 98s ok. 98s exercise 32 [ mixdchlet-utest] ... sqc: evaluating line: 1 exercise mixdchlet-utest @esl_mixdchlet_utest@ 98s sqc: after filename subst, cmd is: ./easel/esl_mixdchlet_utest 98s sqc: after output subst, cmd is: ./easel/esl_mixdchlet_utest > /dev/null 2> esltmpaa2091.stderr 98s sqc: running cmd: ./easel/esl_mixdchlet_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 33 [ msa-utest] ... sqc: evaluating line: 1 exercise msa-utest @esl_msa_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msa_utest 99s sqc: after output subst, cmd is: ./easel/esl_msa_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msa_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 34 [ msacluster-utest] ... sqc: evaluating line: 1 exercise msacluster-utest @esl_msacluster_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msacluster_utest 99s sqc: after output subst, cmd is: ./easel/esl_msacluster_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msacluster_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 35 [ msafile] ... sqc: evaluating line: 1 exercise msafile @esl_msafile_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 36 [ msafile2] ... sqc: evaluating line: 1 exercise msafile2 @esl_msafile2_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile2_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile2_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile2_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 37 [ msafile-a2m] ... sqc: evaluating line: 1 exercise msafile-a2m @esl_msafile_a2m_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_a2m_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_a2m_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_a2m_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 38 [ msafile-afa] ... sqc: evaluating line: 1 exercise msafile-afa @esl_msafile_afa_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_afa_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_afa_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_afa_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 39 [ msafile-clustal] ... sqc: evaluating line: 1 exercise msafile-clustal @esl_msafile_clustal_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_clustal_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_clustal_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_clustal_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 40 [ msafile-phylip] ... sqc: evaluating line: 1 exercise msafile-phylip @esl_msafile_phylip_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_phylip_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_phylip_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_phylip_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 41 [ msafile-psiblast] ... sqc: evaluating line: 1 exercise msafile-psiblast @esl_msafile_psiblast_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_psiblast_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_psiblast_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_psiblast_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 42 [ msafile-selex] ... sqc: evaluating line: 1 exercise msafile-selex @esl_msafile_selex_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_selex_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_selex_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_selex_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 43 [ msafile-stockholm] ... sqc: evaluating line: 1 exercise msafile-stockholm @esl_msafile_stockholm_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msafile_stockholm_utest 99s sqc: after output subst, cmd is: ./easel/esl_msafile_stockholm_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msafile_stockholm_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 44 [ msaweight-utest] ... sqc: evaluating line: 1 exercise msaweight-utest @esl_msaweight_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_msaweight_utest 99s sqc: after output subst, cmd is: ./easel/esl_msaweight_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_msaweight_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 45 [ neon-utest] ... sqc: evaluating line: 1 exercise neon-utest @esl_neon_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_neon_utest 99s sqc: after output subst, cmd is: ./easel/esl_neon_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_neon_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 46 [ normal-utest] ... sqc: evaluating line: 1 exercise normal-utest @esl_normal_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_normal_utest 99s sqc: after output subst, cmd is: ./easel/esl_normal_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_normal_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 47 [ quicksort-utest] ... sqc: evaluating line: 1 exercise quicksort-utest @esl_quicksort_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_quicksort_utest 99s sqc: after output subst, cmd is: ./easel/esl_quicksort_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_quicksort_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: return status 0 99s ok. 99s exercise 48 [ random-utest] ... sqc: evaluating line: 1 exercise random-utest @esl_random_utest@ 99s sqc: after filename subst, cmd is: ./easel/esl_random_utest 99s sqc: after output subst, cmd is: ./easel/esl_random_utest > /dev/null 2> esltmpaa2091.stderr 99s sqc: running cmd: ./easel/esl_random_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 49 [ rand64-utest] ... sqc: evaluating line: 1 exercise rand64-utest @esl_rand64_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_rand64_utest 100s sqc: after output subst, cmd is: ./easel/esl_rand64_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_rand64_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 50 [ randomseq-utest] ... sqc: evaluating line: 1 exercise randomseq-utest @esl_randomseq_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_randomseq_utest 100s sqc: after output subst, cmd is: ./easel/esl_randomseq_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_randomseq_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 51 [ ratematrix-utest] ... sqc: evaluating line: 1 exercise ratematrix-utest @esl_ratematrix_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_ratematrix_utest 100s sqc: after output subst, cmd is: ./easel/esl_ratematrix_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_ratematrix_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 52 [ recorder-utest] ... sqc: evaluating line: 1 exercise recorder-utest @esl_recorder_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_recorder_utest 100s sqc: after output subst, cmd is: ./easel/esl_recorder_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_recorder_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 53 [ red_black-utest] ... sqc: evaluating line: 1 exercise red_black-utest @esl_red_black_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_red_black_utest 100s sqc: after output subst, cmd is: ./easel/esl_red_black_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_red_black_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 54 [ regexp-utest] ... sqc: evaluating line: 1 exercise regexp-utest @esl_regexp_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_regexp_utest 100s sqc: after output subst, cmd is: ./easel/esl_regexp_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_regexp_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 55 [ rootfinder-utest] ... sqc: evaluating line: 1 exercise rootfinder-utest @esl_rootfinder_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_rootfinder_utest 100s sqc: after output subst, cmd is: ./easel/esl_rootfinder_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_rootfinder_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 56 [ scorematrix-utest] ... sqc: evaluating line: 1 exercise scorematrix-utest @esl_scorematrix_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_scorematrix_utest 100s sqc: after output subst, cmd is: ./easel/esl_scorematrix_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_scorematrix_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 57 [ sq-utest] ... sqc: evaluating line: 1 exercise sq-utest @esl_sq_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_sq_utest 100s sqc: after output subst, cmd is: ./easel/esl_sq_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_sq_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 58 [ sqio-utest] ... sqc: evaluating line: 1 exercise sqio-utest @esl_sqio_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_sqio_utest 100s sqc: after output subst, cmd is: ./easel/esl_sqio_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_sqio_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 59 [ sse-utest] ... sqc: evaluating line: 1 exercise sse-utest @esl_sse_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_sse_utest 100s sqc: after output subst, cmd is: ./easel/esl_sse_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_sse_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 60 [ ssi-utest] ... sqc: evaluating line: 1 exercise ssi-utest @esl_ssi_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_ssi_utest 100s sqc: after output subst, cmd is: ./easel/esl_ssi_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_ssi_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 61 [ stack-utest] ... sqc: evaluating line: 1 exercise stack-utest @esl_stack_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_stack_utest 100s sqc: after output subst, cmd is: ./easel/esl_stack_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_stack_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 62 [ stats-utest] ... sqc: evaluating line: 1 exercise stats-utest @esl_stats_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_stats_utest 100s sqc: after output subst, cmd is: ./easel/esl_stats_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_stats_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 63 [ stretchexp-utest] ... sqc: evaluating line: 1 exercise stretchexp-utest @esl_stretchexp_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_stretchexp_utest 100s sqc: after output subst, cmd is: ./easel/esl_stretchexp_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_stretchexp_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 64 [ tree-utest] ... sqc: evaluating line: 1 exercise tree-utest @esl_tree_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_tree_utest 100s sqc: after output subst, cmd is: ./easel/esl_tree_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_tree_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 65 [ varint-utest] ... sqc: evaluating line: 1 exercise varint-utest @esl_varint_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_varint_utest 100s sqc: after output subst, cmd is: ./easel/esl_varint_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_varint_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: return status 0 100s ok. 100s exercise 66 [ vectorops-utest] ... sqc: evaluating line: 1 exercise vectorops-utest @esl_vectorops_utest@ 100s sqc: after filename subst, cmd is: ./easel/esl_vectorops_utest 100s sqc: after output subst, cmd is: ./easel/esl_vectorops_utest > /dev/null 2> esltmpaa2091.stderr 100s sqc: running cmd: ./easel/esl_vectorops_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 67 [ vmx-utest] ... sqc: evaluating line: 1 exercise vmx-utest @esl_vmx_utest@ 101s sqc: after filename subst, cmd is: ./easel/esl_vmx_utest 101s sqc: after output subst, cmd is: ./easel/esl_vmx_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel/esl_vmx_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 68 [ weibull-utest] ... sqc: evaluating line: 1 exercise weibull-utest @esl_weibull_utest@ 101s sqc: after filename subst, cmd is: ./easel/esl_weibull_utest 101s sqc: after output subst, cmd is: ./easel/esl_weibull_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel/esl_weibull_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 69 [ wuss-utest] ... sqc: evaluating line: 1 exercise wuss-utest @esl_wuss_utest@ 101s sqc: after filename subst, cmd is: ./easel/esl_wuss_utest 101s sqc: after output subst, cmd is: ./easel/esl_wuss_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel/esl_wuss_utest > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 70 [ e2] ... sqc: evaluating line: 1 exercise e2 !testsuite/e2.sh! @miniapps/esl-seqstat@ !formats/stockholm.1! 101s sqc: after filename subst, cmd is: ./easel//testsuite/e2.sh ./easel/miniapps/esl-seqstat ./easel//formats/stockholm.1 101s sqc: after output subst, cmd is: ./easel//testsuite/e2.sh ./easel/miniapps/esl-seqstat ./easel//formats/stockholm.1 > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//testsuite/e2.sh ./easel/miniapps/esl-seqstat ./easel//formats/stockholm.1 > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 71 [ degen-residues] ... sqc: evaluating line: 1 exercise degen-residues !testsuite/i1-degen-residues.pl! @@ !! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//testsuite/i1-degen-residues.pl ./easel ./easel/ esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//testsuite/i1-degen-residues.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//testsuite/i1-degen-residues.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 72 [ ncbi-indices] ... sqc: evaluating line: 1 exercise ncbi-indices !testsuite/i2-ncbi-indices.pl! @@ !! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//testsuite/i2-ncbi-indices.pl ./easel ./easel/ esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//testsuite/i2-ncbi-indices.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//testsuite/i2-ncbi-indices.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 73 [ blank-gf] ... sqc: evaluating line: 1 exercise blank-gf !testsuite/i3-blank-gf.pl! @@ !! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//testsuite/i3-blank-gf.pl ./easel ./easel/ esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//testsuite/i3-blank-gf.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//testsuite/i3-blank-gf.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 74 [ sindi] ... sqc: evaluating line: 1 exercise sindi !testsuite/i4-alimanip-sindi.sh! @@ !! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//testsuite/i4-alimanip-sindi.sh ./easel ./easel/ esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//testsuite/i4-alimanip-sindi.sh ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//testsuite/i4-alimanip-sindi.sh ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 75 [ esl-translate] ... sqc: evaluating line: 1 exercise esl-translate !miniapps/esl-translate.itest.pl! @@ !! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-translate.itest.pl ./easel ./easel/ esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-translate.itest.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-translate.itest.pl ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 76 [ esl-afetch] ... sqc: evaluating line: 1 exercise esl-afetch !miniapps/esl-afetch.itest.pl! @miniapps/esl-afetch@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-afetch.itest.pl ./easel/miniapps/esl-afetch esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-afetch.itest.pl ./easel/miniapps/esl-afetch esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-afetch.itest.pl ./easel/miniapps/esl-afetch esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 77 [ esl-alimanip] ... sqc: evaluating line: 1 exercise esl-alimanip !miniapps/esl-alimanip.itest.pl! @miniapps/esl-alimanip@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-alimanip.itest.pl ./easel/miniapps/esl-alimanip esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-alimanip.itest.pl ./easel/miniapps/esl-alimanip esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-alimanip.itest.pl ./easel/miniapps/esl-alimanip esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 78 [ esl-alimap] ... sqc: evaluating line: 1 exercise esl-alimap !miniapps/esl-alimap.itest.pl! @miniapps/esl-alimap@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-alimap.itest.pl ./easel/miniapps/esl-alimap esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-alimap.itest.pl ./easel/miniapps/esl-alimap esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-alimap.itest.pl ./easel/miniapps/esl-alimap esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 79 [ esl-alimask] ... sqc: evaluating line: 1 exercise esl-alimask !miniapps/esl-alimask.itest.pl! @miniapps/esl-alimask@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-alimask.itest.pl ./easel/miniapps/esl-alimask esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-alimask.itest.pl ./easel/miniapps/esl-alimask esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-alimask.itest.pl ./easel/miniapps/esl-alimask esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 80 [ esl-alimerge] ... sqc: evaluating line: 1 exercise esl-alimerge !miniapps/esl-alimerge.itest.pl! @miniapps/esl-alimerge@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-alimerge.itest.pl ./easel/miniapps/esl-alimerge esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-alimerge.itest.pl ./easel/miniapps/esl-alimerge esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-alimerge.itest.pl ./easel/miniapps/esl-alimerge esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 81 [ esl-alistat] ... sqc: evaluating line: 1 exercise esl-alistat !miniapps/esl-alistat.itest.pl! @miniapps/esl-alistat@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-alistat.itest.pl ./easel/miniapps/esl-alistat esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-alistat.itest.pl ./easel/miniapps/esl-alistat esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-alistat.itest.pl ./easel/miniapps/esl-alistat esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 82 [ esl-compalign] ... sqc: evaluating line: 1 exercise esl-compalign !miniapps/esl-compalign.itest.pl! @miniapps/esl-compalign@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-compalign.itest.pl ./easel/miniapps/esl-compalign esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-compalign.itest.pl ./easel/miniapps/esl-compalign esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-compalign.itest.pl ./easel/miniapps/esl-compalign esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 83 [ esl-construct] ... sqc: evaluating line: 1 exercise esl-construct !miniapps/esl-construct.itest.pl! @miniapps/esl-construct@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-construct.itest.pl ./easel/miniapps/esl-construct esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-construct.itest.pl ./easel/miniapps/esl-construct esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-construct.itest.pl ./easel/miniapps/esl-construct esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 84 [ esl-mask] ... sqc: evaluating line: 1 exercise esl-mask !miniapps/esl-mask.itest.pl! @miniapps/esl-mask@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-mask.itest.pl ./easel/miniapps/esl-mask esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-mask.itest.pl ./easel/miniapps/esl-mask esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-mask.itest.pl ./easel/miniapps/esl-mask esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 85 [ esl-seqrange] ... sqc: evaluating line: 1 exercise esl-seqrange !miniapps/esl-seqrange.itest.pl! @miniapps/esl-seqrange@ @miniapps/esl-sfetch@ %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-seqrange.itest.pl ./easel/miniapps/esl-seqrange ./easel/miniapps/esl-sfetch esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-seqrange.itest.pl ./easel/miniapps/esl-seqrange ./easel/miniapps/esl-sfetch esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-seqrange.itest.pl ./easel/miniapps/esl-seqrange ./easel/miniapps/esl-sfetch esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 86 [ esl-shuffle] ... sqc: evaluating line: 1 exercise esl-shuffle !miniapps/esl-shuffle.itest.py! @@ !! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-shuffle.itest.py ./easel ./easel/ esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-shuffle.itest.py ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-shuffle.itest.py ./easel ./easel/ esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s exercise 87 [ esl-ssdraw] ... sqc: evaluating line: 1 exercise esl-ssdraw !miniapps/esl-ssdraw.itest.pl! @miniapps/esl-ssdraw@ !testsuite/trna-ssdraw.ps! !testsuite/trna-5.stk! %TESTPFX% 101s sqc: after filename subst, cmd is: ./easel//miniapps/esl-ssdraw.itest.pl ./easel/miniapps/esl-ssdraw ./easel//testsuite/trna-ssdraw.ps ./easel//testsuite/trna-5.stk esltmpaa2091.TESTPFX 101s sqc: after output subst, cmd is: ./easel//miniapps/esl-ssdraw.itest.pl ./easel/miniapps/esl-ssdraw ./easel//testsuite/trna-ssdraw.ps ./easel//testsuite/trna-5.stk esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: running cmd: ./easel//miniapps/esl-ssdraw.itest.pl ./easel/miniapps/esl-ssdraw ./easel//testsuite/trna-ssdraw.ps ./easel//testsuite/trna-5.stk esltmpaa2091.TESTPFX > /dev/null 2> esltmpaa2091.stderr 101s sqc: return status 0 101s ok. 101s 101s All 87 exercises at level <= 2 passed. 101s 101s 101s System information: 101s Mon Nov 17 16:57:17 UTC 2025 101s Linux autopkgtest 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 x86_64 GNU/Linux 101s hmmer testsuite 101s sqc: running ./testsuite/testsuite.sqc. 101s exercise 1 [ hmmer] ... sqc: evaluating line: 1 exercise hmmer @src/hmmer_utest@ 101s sqc: after filename subst, cmd is: ./src/hmmer_utest 101s sqc: after output subst, cmd is: ./src/hmmer_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/hmmer_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 2 [ build] ... sqc: evaluating line: 1 exercise build @src/build_utest@ 101s sqc: after filename subst, cmd is: ./src/build_utest 101s sqc: after output subst, cmd is: ./src/build_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/build_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 3 [ generic_fwdback] ... sqc: evaluating line: 1 exercise generic_fwdback @src/generic_fwdback_utest@ 101s sqc: after filename subst, cmd is: ./src/generic_fwdback_utest 101s sqc: after output subst, cmd is: ./src/generic_fwdback_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/generic_fwdback_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 4 [ generic_msv] ... sqc: evaluating line: 1 exercise generic_msv @src/generic_msv_utest@ 101s sqc: after filename subst, cmd is: ./src/generic_msv_utest 101s sqc: after output subst, cmd is: ./src/generic_msv_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/generic_msv_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 5 [ generic_stotrace] ... sqc: evaluating line: 1 exercise generic_stotrace @src/generic_stotrace_utest@ 101s sqc: after filename subst, cmd is: ./src/generic_stotrace_utest 101s sqc: after output subst, cmd is: ./src/generic_stotrace_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/generic_stotrace_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 6 [ generic_viterbi] ... sqc: evaluating line: 1 exercise generic_viterbi @src/generic_viterbi_utest@ 101s sqc: after filename subst, cmd is: ./src/generic_viterbi_utest 101s sqc: after output subst, cmd is: ./src/generic_viterbi_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/generic_viterbi_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 7 [ hmmd_search_status] ... sqc: evaluating line: 1 exercise hmmd_search_status @src/hmmd_search_status_utest@ 101s sqc: after filename subst, cmd is: ./src/hmmd_search_status_utest 101s sqc: after output subst, cmd is: ./src/hmmd_search_status_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/hmmd_search_status_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 8 [ logsum] ... sqc: evaluating line: 1 exercise logsum @src/logsum_utest@ 101s sqc: after filename subst, cmd is: ./src/logsum_utest 101s sqc: after output subst, cmd is: ./src/logsum_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/logsum_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 9 [ modelconfig] ... sqc: evaluating line: 1 exercise modelconfig @src/modelconfig_utest@ 101s sqc: after filename subst, cmd is: ./src/modelconfig_utest 101s sqc: after output subst, cmd is: ./src/modelconfig_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/modelconfig_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 10 [ seqmodel] ... sqc: evaluating line: 1 exercise seqmodel @src/seqmodel_utest@ 101s sqc: after filename subst, cmd is: ./src/seqmodel_utest 101s sqc: after output subst, cmd is: ./src/seqmodel_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/seqmodel_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 11 [ p7_alidisplay] ... sqc: evaluating line: 1 exercise p7_alidisplay @src/p7_alidisplay_utest@ 101s sqc: after filename subst, cmd is: ./src/p7_alidisplay_utest 101s sqc: after output subst, cmd is: ./src/p7_alidisplay_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/p7_alidisplay_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 12 [ p7_bg] ... sqc: evaluating line: 1 exercise p7_bg @src/p7_bg_utest@ 101s sqc: after filename subst, cmd is: ./src/p7_bg_utest 101s sqc: after output subst, cmd is: ./src/p7_bg_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/p7_bg_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 13 [ p7_domain] ... sqc: evaluating line: 1 exercise p7_domain @src/p7_domain_utest@ 101s sqc: after filename subst, cmd is: ./src/p7_domain_utest 101s sqc: after output subst, cmd is: ./src/p7_domain_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/p7_domain_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: return status 0 101s ok. 101s exercise 14 [ p7_gmx] ... sqc: evaluating line: 1 exercise p7_gmx @src/p7_gmx_utest@ 101s sqc: after filename subst, cmd is: ./src/p7_gmx_utest 101s sqc: after output subst, cmd is: ./src/p7_gmx_utest > /dev/null 2> esltmpaa3042.stderr 101s sqc: running cmd: ./src/p7_gmx_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 34304 102s FAILED [crash!] 102s exercise 15 [ p7_hit] ... sqc: evaluating line: 1 exercise p7_hit @src/p7_hit_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_hit_utest 102s sqc: after output subst, cmd is: ./src/p7_hit_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_hit_utest > /dev/null 2> esltmpaa3042.stderr 102s Aborted (core dumped) 102s sqc: return status 0 102s ok. 102s exercise 16 [ p7_hmm] ... sqc: evaluating line: 1 exercise p7_hmm @src/p7_hmm_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_hmm_utest 102s sqc: after output subst, cmd is: ./src/p7_hmm_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_hmm_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 17 [ p7_hmmfile] ... sqc: evaluating line: 1 exercise p7_hmmfile @src/p7_hmmfile_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_hmmfile_utest 102s sqc: after output subst, cmd is: ./src/p7_hmmfile_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_hmmfile_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 18 [ p7_hmmd_search_stats] ... sqc: evaluating line: 1 exercise p7_hmmd_search_stats @src/p7_hmmd_search_stats_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_hmmd_search_stats_utest 102s sqc: after output subst, cmd is: ./src/p7_hmmd_search_stats_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_hmmd_search_stats_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 19 [ p7_profile] ... sqc: evaluating line: 1 exercise p7_profile @src/p7_profile_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_profile_utest 102s sqc: after output subst, cmd is: ./src/p7_profile_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_profile_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 20 [ p7_tophits] ... sqc: evaluating line: 1 exercise p7_tophits @src/p7_tophits_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_tophits_utest 102s sqc: after output subst, cmd is: ./src/p7_tophits_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_tophits_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 21 [ p7_trace] ... sqc: evaluating line: 1 exercise p7_trace @src/p7_trace_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_trace_utest 102s sqc: after output subst, cmd is: ./src/p7_trace_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_trace_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 22 [ p7_scoredata] ... sqc: evaluating line: 1 exercise p7_scoredata @src/p7_scoredata_utest@ 102s sqc: after filename subst, cmd is: ./src/p7_scoredata_utest 102s sqc: after output subst, cmd is: ./src/p7_scoredata_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/p7_scoredata_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 23 [ decoding] ... sqc: evaluating line: 1 exercise decoding @src/impl/decoding_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/decoding_utest 102s sqc: after output subst, cmd is: ./src/impl/decoding_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/decoding_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 24 [ fwdback] ... sqc: evaluating line: 1 exercise fwdback @src/impl/fwdback_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/fwdback_utest 102s sqc: after output subst, cmd is: ./src/impl/fwdback_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/fwdback_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 25 [ io] ... sqc: evaluating line: 1 exercise io @src/impl/io_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/io_utest 102s sqc: after output subst, cmd is: ./src/impl/io_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/io_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 26 [ msvfilter] ... sqc: evaluating line: 1 exercise msvfilter @src/impl/msvfilter_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/msvfilter_utest 102s sqc: after output subst, cmd is: ./src/impl/msvfilter_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/msvfilter_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 27 [ null2] ... sqc: evaluating line: 1 exercise null2 @src/impl/null2_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/null2_utest 102s sqc: after output subst, cmd is: ./src/impl/null2_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/null2_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 28 [ optacc] ... sqc: evaluating line: 1 exercise optacc @src/impl/optacc_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/optacc_utest 102s sqc: after output subst, cmd is: ./src/impl/optacc_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/optacc_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 29 [ stotrace] ... sqc: evaluating line: 1 exercise stotrace @src/impl/stotrace_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/stotrace_utest 102s sqc: after output subst, cmd is: ./src/impl/stotrace_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/stotrace_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 30 [ vitfilter] ... sqc: evaluating line: 1 exercise vitfilter @src/impl/vitfilter_utest@ 102s sqc: after filename subst, cmd is: ./src/impl/vitfilter_utest 102s sqc: after output subst, cmd is: ./src/impl/vitfilter_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/impl/vitfilter_utest > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 31 [ hmmpgmd2msa] ... sqc: evaluating line: 1 exercise hmmpgmd2msa @src/hmmpgmd2msa_utest@ !testsuite/Caudal_act.hmm! 102s sqc: after filename subst, cmd is: ./src/hmmpgmd2msa_utest ./testsuite/../testsuite/Caudal_act.hmm 102s sqc: after output subst, cmd is: ./src/hmmpgmd2msa_utest ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmpgmd2msa_utest ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s sqc: evaluating line: 1 prep Caudal @easel/miniapps/esl-afetch@ !testsuite/minifam! Caudal_act > %CAUDAL.STO% 102s sqc: after filename subst, cmd is: ./easel/miniapps/esl-afetch ./testsuite/../testsuite/minifam Caudal_act > esltmpaa3042.CAUDAL.STO 102s sqc: after output subst, cmd is: ./easel/miniapps/esl-afetch ./testsuite/../testsuite/minifam Caudal_act > esltmpaa3042.CAUDAL.STO 2> esltmpaa3042.stderr 102s sqc: running cmd: ./easel/miniapps/esl-afetch ./testsuite/../testsuite/minifam Caudal_act > esltmpaa3042.CAUDAL.STO 2> esltmpaa3042.stderr 102s sqc: return status 0 102s sqc: evaluating line: 1 prep hmm @src/hmmbuild@ %CAUDAL.HMM% %CAUDAL.STO% 102s sqc: after filename subst, cmd is: ./src/hmmbuild esltmpaa3042.CAUDAL.HMM esltmpaa3042.CAUDAL.STO 102s sqc: after output subst, cmd is: ./src/hmmbuild esltmpaa3042.CAUDAL.HMM esltmpaa3042.CAUDAL.STO > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild esltmpaa3042.CAUDAL.HMM esltmpaa3042.CAUDAL.STO > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s sqc: evaluating line: 1 prep minifam @src/hmmbuild@ %MINIFAM.HMM% !testsuite/minifam! 102s sqc: after filename subst, cmd is: ./src/hmmbuild esltmpaa3042.MINIFAM.HMM ./testsuite/../testsuite/minifam 102s sqc: after output subst, cmd is: ./src/hmmbuild esltmpaa3042.MINIFAM.HMM ./testsuite/../testsuite/minifam > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild esltmpaa3042.MINIFAM.HMM ./testsuite/../testsuite/minifam > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s sqc: evaluating line: 1 prep minifam_press @src/hmmpress@ %MINIFAM.HMM% 102s sqc: after filename subst, cmd is: ./src/hmmpress esltmpaa3042.MINIFAM.HMM 102s sqc: after output subst, cmd is: ./src/hmmpress esltmpaa3042.MINIFAM.HMM > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmpress esltmpaa3042.MINIFAM.HMM > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s sqc: evaluating line: 1 prep testseq @src/hmmemit@ -p --unilocal -L0 -N 4 --seed 42 !testsuite/Caudal_act.hmm! > %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmemit -p --unilocal -L0 -N 4 --seed 42 ./testsuite/../testsuite/Caudal_act.hmm > esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmemit -p --unilocal -L0 -N 4 --seed 42 ./testsuite/../testsuite/Caudal_act.hmm > esltmpaa3042.TESTSEQ 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmemit -p --unilocal -L0 -N 4 --seed 42 ./testsuite/../testsuite/Caudal_act.hmm > esltmpaa3042.TESTSEQ 2> esltmpaa3042.stderr 102s sqc: return status 0 102s exercise 32 [ hmmalign] ... sqc: evaluating line: 1 exercise hmmalign @src/hmmalign@ !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 33 [ hmmalign/-h] ... sqc: evaluating line: 1 exercise hmmalign/-h @src/hmmalign@ -h 102s sqc: after filename subst, cmd is: ./src/hmmalign -h 102s sqc: after output subst, cmd is: ./src/hmmalign -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 34 [ hmmalign/-o] ... sqc: evaluating line: 1 exercise hmmalign/-o @src/hmmalign@ -o /dev/null !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign -o /dev/null ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign -o /dev/null ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign -o /dev/null ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 35 [ hmmalign/--mapali] ... sqc: evaluating line: 1 exercise hmmalign/--mapali @src/hmmalign@ --mapali !testsuite/Caudal_act.sto! !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign --mapali ./testsuite/../testsuite/Caudal_act.sto ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign --mapali ./testsuite/../testsuite/Caudal_act.sto ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign --mapali ./testsuite/../testsuite/Caudal_act.sto ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 36 [ hmmalign/--trim] ... sqc: evaluating line: 1 exercise hmmalign/--trim @src/hmmalign@ --trim !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign --trim ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign --trim ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign --trim ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 37 [ hmmalign/--amino] ... sqc: evaluating line: 1 exercise hmmalign/--amino @src/hmmalign@ --amino !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign --amino ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign --amino ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign --amino ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 38 [ hmmalign/--informat] ... sqc: evaluating line: 1 exercise hmmalign/--informat @src/hmmalign@ --informat fasta !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign --informat fasta ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign --informat fasta ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign --informat fasta ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 39 [ hmmalign/--outformat] ... sqc: evaluating line: 1 exercise hmmalign/--outformat @src/hmmalign@ --outformat a2m !testsuite/Caudal_act.hmm! %TESTSEQ% 102s sqc: after filename subst, cmd is: ./src/hmmalign --outformat a2m ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ 102s sqc: after output subst, cmd is: ./src/hmmalign --outformat a2m ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmalign --outformat a2m ./testsuite/../testsuite/Caudal_act.hmm esltmpaa3042.TESTSEQ > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 40 [ hmmbuild] ... sqc: evaluating line: 1 exercise hmmbuild @src/hmmbuild@ --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 41 [ build/-h] ... sqc: evaluating line: 1 exercise build/-h @src/hmmbuild@ -h 102s sqc: after filename subst, cmd is: ./src/hmmbuild -h 102s sqc: after output subst, cmd is: ./src/hmmbuild -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 42 [ build/-n] ... sqc: evaluating line: 1 exercise build/-n @src/hmmbuild@ -n foo --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild -n foo --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild -n foo --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild -n foo --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 43 [ build/-o] ... sqc: evaluating line: 1 exercise build/-o @src/hmmbuild@ -o %HMMBUILD.out% --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild -o esltmpaa3042.HMMBUILD.out --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild -o esltmpaa3042.HMMBUILD.out --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild -o esltmpaa3042.HMMBUILD.out --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 44 [ build/-O] ... sqc: evaluating line: 1 exercise build/-O @src/hmmbuild@ -O %HMMBUILD.sto% --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild -O esltmpaa3042.HMMBUILD.sto --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild -O esltmpaa3042.HMMBUILD.sto --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild -O esltmpaa3042.HMMBUILD.sto --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 45 [ build/--amino] ... sqc: evaluating line: 1 exercise build/--amino @src/hmmbuild@ --amino --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/M1.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --amino --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --amino --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --amino --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 46 [ build/--dna] ... sqc: evaluating line: 1 exercise build/--dna @src/hmmbuild@ --dna --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/M1.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --dna --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --dna --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --dna --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 47 [ build/--rna] ... sqc: evaluating line: 1 exercise build/--rna @src/hmmbuild@ --rna --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/M1.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --rna --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --rna --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --rna --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 48 [ build/--fast] ... sqc: evaluating line: 1 exercise build/--fast @src/hmmbuild@ --fast --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --fast --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --fast --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --fast --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 49 [ build/--hand] ... sqc: evaluating line: 1 exercise build/--hand @src/hmmbuild@ --hand --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --hand --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --hand --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --hand --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 50 [ build/--symfrac] ... sqc: evaluating line: 1 exercise build/--symfrac @src/hmmbuild@ --symfrac 1.0 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --symfrac 1.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --symfrac 1.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --symfrac 1.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 51 [ build/--fragthresh] ... sqc: evaluating line: 1 exercise build/--fragthresh @src/hmmbuild@ --fragthresh 0.4 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --fragthresh 0.4 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --fragthresh 0.4 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --fragthresh 0.4 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 52 [ build/--wpb] ... sqc: evaluating line: 1 exercise build/--wpb @src/hmmbuild@ --wpb --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --wpb --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --wpb --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --wpb --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 53 [ build/--wgsc] ... sqc: evaluating line: 1 exercise build/--wgsc @src/hmmbuild@ --wgsc --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --wgsc --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --wgsc --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --wgsc --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 54 [ build/--wblosum] ... sqc: evaluating line: 1 exercise build/--wblosum @src/hmmbuild@ --wblosum --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --wblosum --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --wblosum --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --wblosum --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 55 [ build/--wnone] ... sqc: evaluating line: 1 exercise build/--wnone @src/hmmbuild@ --wnone --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --wnone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --wnone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --wnone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 56 [ build/--wid] ... sqc: evaluating line: 1 exercise build/--wid @src/hmmbuild@ --wblosum --wid 0.5 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --wblosum --wid 0.5 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --wblosum --wid 0.5 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --wblosum --wid 0.5 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 57 [ build/--eent] ... sqc: evaluating line: 1 exercise build/--eent @src/hmmbuild@ --eent --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --eent --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --eent --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --eent --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 58 [ build/--eclust] ... sqc: evaluating line: 1 exercise build/--eclust @src/hmmbuild@ --eclust --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --eclust --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --eclust --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --eclust --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 59 [ build/--enone] ... sqc: evaluating line: 1 exercise build/--enone @src/hmmbuild@ --enone --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --enone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --enone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --enone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 60 [ build/--eset] ... sqc: evaluating line: 1 exercise build/--eset @src/hmmbuild@ --eset 1.0 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --eset 1.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --eset 1.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --eset 1.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 61 [ build/--ere] ... sqc: evaluating line: 1 exercise build/--ere @src/hmmbuild@ --eent --ere 0.55 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --eent --ere 0.55 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --eent --ere 0.55 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --eent --ere 0.55 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 62 [ build/--esigma] ... sqc: evaluating line: 1 exercise build/--esigma @src/hmmbuild@ --eent --esigma 44.0 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --eent --esigma 44.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --eent --esigma 44.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --eent --esigma 44.0 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 63 [ build/--eid] ... sqc: evaluating line: 1 exercise build/--eid @src/hmmbuild@ --eclust --eid 0.60 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --eclust --eid 0.60 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --eclust --eid 0.60 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --eclust --eid 0.60 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 64 [ build/--pnone] ... sqc: evaluating line: 1 exercise build/--pnone @src/hmmbuild@ --pnone --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --pnone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --pnone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --pnone --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 65 [ build/--plaplace] ... sqc: evaluating line: 1 exercise build/--plaplace @src/hmmbuild@ --plaplace --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --plaplace --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --plaplace --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --plaplace --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 66 [ build/--EmL] ... sqc: evaluating line: 1 exercise build/--EmL @src/hmmbuild@ --EmL 100 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EmL 100 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EmL 100 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EmL 100 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 67 [ build/--EmN] ... sqc: evaluating line: 1 exercise build/--EmN @src/hmmbuild@ --EmN 250 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EmN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EmN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EmN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 68 [ build/--EvL] ... sqc: evaluating line: 1 exercise build/--EvL @src/hmmbuild@ --EvL 100 --EmL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EvL 100 --EmL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EvL 100 --EmL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EvL 100 --EmL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 69 [ build/--EvN] ... sqc: evaluating line: 1 exercise build/--EvN @src/hmmbuild@ --EvN 250 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EvN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EvN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EvN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 70 [ build/--EfL] ... sqc: evaluating line: 1 exercise build/--EfL @src/hmmbuild@ --EfL 100 --EmL 10 --EvL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EfL 100 --EmL 10 --EvL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EfL 100 --EmL 10 --EvL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EfL 100 --EmL 10 --EvL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 71 [ build/--EfN] ... sqc: evaluating line: 1 exercise build/--EfN @src/hmmbuild@ --EfN 250 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --EfN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --EfN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --EfN 250 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 72 [ build/--Eft] ... sqc: evaluating line: 1 exercise build/--Eft @src/hmmbuild@ --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 73 [ build/--informat] ... sqc: evaluating line: 1 exercise build/--informat @src/hmmbuild@ --informat stockholm --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --informat stockholm --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --informat stockholm --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --informat stockholm --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 74 [ build/--seed] ... sqc: evaluating line: 1 exercise build/--seed @src/hmmbuild@ --seed 42 --EmL 10 --EvL 10 --EfL 10 %HMMBUILD.hmm% !testsuite/20aa.sto! 102s sqc: after filename subst, cmd is: ./src/hmmbuild --seed 42 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto 102s sqc: after output subst, cmd is: ./src/hmmbuild --seed 42 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmbuild --seed 42 --EmL 10 --EvL 10 --EfL 10 esltmpaa3042.HMMBUILD.hmm ./testsuite/../testsuite/20aa.sto > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s sqc: evaluating line: 1 prep rnddb @easel/miniapps/esl-shuffle@ -G --amino -L 100 -N 2 -o %RNDDB% 102s sqc: after filename subst, cmd is: ./easel/miniapps/esl-shuffle -G --amino -L 100 -N 2 -o esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./easel/miniapps/esl-shuffle -G --amino -L 100 -N 2 -o esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./easel/miniapps/esl-shuffle -G --amino -L 100 -N 2 -o esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s exercise 75 [ search] ... sqc: evaluating line: 1 exercise search @src/hmmsearch@ !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 76 [ search/-h] ... sqc: evaluating line: 1 exercise search/-h @src/hmmsearch@ -h 102s sqc: after filename subst, cmd is: ./src/hmmsearch -h 102s sqc: after output subst, cmd is: ./src/hmmsearch -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 77 [ search/-o] ... sqc: evaluating line: 1 exercise search/-o @src/hmmsearch@ -o %HMMSEARCH.out% !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch -o esltmpaa3042.HMMSEARCH.out ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch -o esltmpaa3042.HMMSEARCH.out ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch -o esltmpaa3042.HMMSEARCH.out ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 78 [ search/-A] ... sqc: evaluating line: 1 exercise search/-A @src/hmmsearch@ -A %HMMSEARCH.sto% !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch -A esltmpaa3042.HMMSEARCH.sto ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch -A esltmpaa3042.HMMSEARCH.sto ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch -A esltmpaa3042.HMMSEARCH.sto ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 79 [ search/--tblout] ... sqc: evaluating line: 1 exercise search/--tblout @src/hmmsearch@ --tblout %HMMSEARCH.tbl% !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --tblout esltmpaa3042.HMMSEARCH.tbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --tblout esltmpaa3042.HMMSEARCH.tbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --tblout esltmpaa3042.HMMSEARCH.tbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 80 [ search/--domtblout] ... sqc: evaluating line: 1 exercise search/--domtblout @src/hmmsearch@ --domtblout %HMMSEARCH.dtbl% !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --domtblout esltmpaa3042.HMMSEARCH.dtbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --domtblout esltmpaa3042.HMMSEARCH.dtbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --domtblout esltmpaa3042.HMMSEARCH.dtbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 81 [ search/--pfamtblout] ... sqc: evaluating line: 1 exercise search/--pfamtblout @src/hmmsearch@ --pfamtblout %HMMSEARCH.dtbl% !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --pfamtblout esltmpaa3042.HMMSEARCH.dtbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --pfamtblout esltmpaa3042.HMMSEARCH.dtbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --pfamtblout esltmpaa3042.HMMSEARCH.dtbl ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 82 [ search/--acc] ... sqc: evaluating line: 1 exercise search/--acc @src/hmmsearch@ --acc !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --acc ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --acc ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --acc ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 83 [ search/--noali] ... sqc: evaluating line: 1 exercise search/--noali @src/hmmsearch@ --noali !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --noali ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --noali ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --noali ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 84 [ search/--notextw] ... sqc: evaluating line: 1 exercise search/--notextw @src/hmmsearch@ --notextw !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --notextw ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --notextw ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --notextw ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 85 [ search/--textw] ... sqc: evaluating line: 1 exercise search/--textw @src/hmmsearch@ --textw 256 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --textw 256 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --textw 256 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --textw 256 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 86 [ search/-E] ... sqc: evaluating line: 1 exercise search/-E @src/hmmsearch@ -E 0.01 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch -E 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch -E 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch -E 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 87 [ search/-T] ... sqc: evaluating line: 1 exercise search/-T @src/hmmsearch@ -T 20 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch -T 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch -T 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch -T 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 88 [ search/--domE] ... sqc: evaluating line: 1 exercise search/--domE @src/hmmsearch@ --domE 0.01 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --domE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --domE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --domE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 89 [ search/--domT] ... sqc: evaluating line: 1 exercise search/--domT @src/hmmsearch@ --domT 20 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --domT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --domT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --domT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 90 [ search/--incE] ... sqc: evaluating line: 1 exercise search/--incE @src/hmmsearch@ --incE 0.01 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --incE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --incE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --incE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 91 [ search/--incT] ... sqc: evaluating line: 1 exercise search/--incT @src/hmmsearch@ --incT 20 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --incT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --incT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --incT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 92 [ search/--incdomE] ... sqc: evaluating line: 1 exercise search/--incdomE @src/hmmsearch@ --incdomE 0.01 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --incdomE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --incdomE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --incdomE 0.01 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 93 [ search/--incdomT] ... sqc: evaluating line: 1 exercise search/--incdomT @src/hmmsearch@ --incdomT 20 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --incdomT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --incdomT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --incdomT 20 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 94 [ search/--cut_ga] ... sqc: evaluating line: 1 exercise search/--cut_ga @src/hmmsearch@ --cut_ga !tutorial/fn3.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --cut_ga ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --cut_ga ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --cut_ga ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 95 [ search/--cut_nc] ... sqc: evaluating line: 1 exercise search/--cut_nc @src/hmmsearch@ --cut_nc !tutorial/fn3.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --cut_nc ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --cut_nc ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --cut_nc ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 96 [ search/--cut_tc] ... sqc: evaluating line: 1 exercise search/--cut_tc @src/hmmsearch@ --cut_tc !tutorial/fn3.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --cut_tc ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --cut_tc ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --cut_tc ./testsuite/../tutorial/fn3.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 97 [ search/--max] ... sqc: evaluating line: 1 exercise search/--max @src/hmmsearch@ --max !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --max ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --max ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --max ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 98 [ search/--F1] ... sqc: evaluating line: 1 exercise search/--F1 @src/hmmsearch@ --F1 0.03 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --F1 0.03 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --F1 0.03 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --F1 0.03 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 99 [ search/--F2] ... sqc: evaluating line: 1 exercise search/--F2 @src/hmmsearch@ --F2 0.002 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --F2 0.002 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --F2 0.002 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --F2 0.002 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 100 [ search/--F3] ... sqc: evaluating line: 1 exercise search/--F3 @src/hmmsearch@ --F3 0.0002 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --F3 0.0002 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --F3 0.0002 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --F3 0.0002 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 101 [ search/--nobias] ... sqc: evaluating line: 1 exercise search/--nobias @src/hmmsearch@ --nobias !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --nobias ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --nobias ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --nobias ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 102 [ search/--nonull2] ... sqc: evaluating line: 1 exercise search/--nonull2 @src/hmmsearch@ --nonull2 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --nonull2 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --nonull2 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --nonull2 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 103 [ search/-Z] ... sqc: evaluating line: 1 exercise search/-Z @src/hmmsearch@ -Z 45000000 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch -Z 45000000 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch -Z 45000000 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch -Z 45000000 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 104 [ search/--domZ] ... sqc: evaluating line: 1 exercise search/--domZ @src/hmmsearch@ --domZ 45000000 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --domZ 45000000 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --domZ 45000000 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --domZ 45000000 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 105 [ search/--seed] ... sqc: evaluating line: 1 exercise search/--seed @src/hmmsearch@ --seed 42 !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --seed 42 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --seed 42 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --seed 42 ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 106 [ search/--tformat] ... sqc: evaluating line: 1 exercise search/--tformat @src/hmmsearch@ --tformat fasta !tutorial/globins4.hmm! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/hmmsearch --tformat fasta ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/hmmsearch --tformat fasta ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmsearch --tformat fasta ./testsuite/../tutorial/globins4.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 107 [ hmmscan] ... sqc: evaluating line: 1 exercise hmmscan @src/hmmscan@ %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 108 [ scan/-h] ... sqc: evaluating line: 1 exercise scan/-h @src/hmmscan@ -h 102s sqc: after filename subst, cmd is: ./src/hmmscan -h 102s sqc: after output subst, cmd is: ./src/hmmscan -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 109 [ scan/-o] ... sqc: evaluating line: 1 exercise scan/-o @src/hmmscan@ -o %SCAN.out% %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan -o esltmpaa3042.SCAN.out esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan -o esltmpaa3042.SCAN.out esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan -o esltmpaa3042.SCAN.out esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 110 [ scan/--tblout] ... sqc: evaluating line: 1 exercise scan/--tblout @src/hmmscan@ --tblout %SCAN.tbl% %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --tblout esltmpaa3042.SCAN.tbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --tblout esltmpaa3042.SCAN.tbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --tblout esltmpaa3042.SCAN.tbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 111 [ scan/--domtblout] ... sqc: evaluating line: 1 exercise scan/--domtblout @src/hmmscan@ --domtblout %SCAN.dtbl% %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --domtblout esltmpaa3042.SCAN.dtbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --domtblout esltmpaa3042.SCAN.dtbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --domtblout esltmpaa3042.SCAN.dtbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 112 [ scan/--pfamtblout] ... sqc: evaluating line: 1 exercise scan/--pfamtblout @src/hmmscan@ --pfamtblout %SCAN.ptbl% %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --pfamtblout esltmpaa3042.SCAN.ptbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --pfamtblout esltmpaa3042.SCAN.ptbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --pfamtblout esltmpaa3042.SCAN.ptbl esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 113 [ scan/--acc] ... sqc: evaluating line: 1 exercise scan/--acc @src/hmmscan@ --acc %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --acc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --acc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --acc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 114 [ scan/--noali] ... sqc: evaluating line: 1 exercise scan/--noali @src/hmmscan@ --noali %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --noali esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --noali esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --noali esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 115 [ scan/--notextw] ... sqc: evaluating line: 1 exercise scan/--notextw @src/hmmscan@ --notextw %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --notextw esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --notextw esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --notextw esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 116 [ scan/--textw] ... sqc: evaluating line: 1 exercise scan/--textw @src/hmmscan@ --textw 120 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --textw 120 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --textw 120 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --textw 120 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 117 [ scan/-E] ... sqc: evaluating line: 1 exercise scan/-E @src/hmmscan@ -E 0.01 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan -E 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan -E 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan -E 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 118 [ scan/-T] ... sqc: evaluating line: 1 exercise scan/-T @src/hmmscan@ -T 20 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan -T 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan -T 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan -T 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 119 [ scan/--domE] ... sqc: evaluating line: 1 exercise scan/--domE @src/hmmscan@ --domE 0.01 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --domE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --domE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --domE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 120 [ scan/--domT] ... sqc: evaluating line: 1 exercise scan/--domT @src/hmmscan@ --domT 20 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --domT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --domT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --domT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 121 [ scan/--incE] ... sqc: evaluating line: 1 exercise scan/--incE @src/hmmscan@ --incE 0.01 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --incE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --incE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --incE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 122 [ scan/--incT] ... sqc: evaluating line: 1 exercise scan/--incT @src/hmmscan@ --incT 20 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --incT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --incT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --incT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 123 [ scan/--incdomE] ... sqc: evaluating line: 1 exercise scan/--incdomE @src/hmmscan@ --incdomE 0.01 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --incdomE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --incdomE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --incdomE 0.01 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 124 [ scan/--incdomT] ... sqc: evaluating line: 1 exercise scan/--incdomT @src/hmmscan@ --incdomT 20 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --incdomT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --incdomT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --incdomT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 125 [ scan/--incdomT] ... sqc: evaluating line: 1 exercise scan/--incdomT @src/hmmscan@ --incdomT 20 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --incdomT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --incdomT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --incdomT 20 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 126 [ scan/--cut_ga] ... sqc: evaluating line: 1 exercise scan/--cut_ga @src/hmmscan@ --cut_ga %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --cut_ga esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --cut_ga esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --cut_ga esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 127 [ scan/--cut_nc] ... sqc: evaluating line: 1 exercise scan/--cut_nc @src/hmmscan@ --cut_nc %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --cut_nc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --cut_nc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --cut_nc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 128 [ scan/--cut_tc] ... sqc: evaluating line: 1 exercise scan/--cut_tc @src/hmmscan@ --cut_tc %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --cut_tc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --cut_tc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --cut_tc esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 129 [ scan/--max] ... sqc: evaluating line: 1 exercise scan/--max @src/hmmscan@ --max %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --max esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --max esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --max esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 130 [ scan/--F1] ... sqc: evaluating line: 1 exercise scan/--F1 @src/hmmscan@ --F1 0.03 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --F1 0.03 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --F1 0.03 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --F1 0.03 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 131 [ scan/--F2] ... sqc: evaluating line: 1 exercise scan/--F2 @src/hmmscan@ --F2 0.002 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --F2 0.002 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --F2 0.002 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --F2 0.002 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 132 [ scan/--F3] ... sqc: evaluating line: 1 exercise scan/--F3 @src/hmmscan@ --F3 0.0002 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --F3 0.0002 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --F3 0.0002 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --F3 0.0002 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 133 [ scan/--nobias] ... sqc: evaluating line: 1 exercise scan/--nobias @src/hmmscan@ --nobias %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --nobias esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --nobias esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --nobias esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 134 [ scan/--nonull2] ... sqc: evaluating line: 1 exercise scan/--nonull2 @src/hmmscan@ --nonull2 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --nonull2 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --nonull2 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --nonull2 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 135 [ scan/-Z] ... sqc: evaluating line: 1 exercise scan/-Z @src/hmmscan@ -Z 45000000 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan -Z 45000000 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan -Z 45000000 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan -Z 45000000 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 136 [ scan/--domZ] ... sqc: evaluating line: 1 exercise scan/--domZ @src/hmmscan@ --domZ 45000000 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --domZ 45000000 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --domZ 45000000 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --domZ 45000000 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 137 [ scan/--seed] ... sqc: evaluating line: 1 exercise scan/--seed @src/hmmscan@ --seed 42 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --seed 42 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --seed 42 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --seed 42 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 138 [ scan/--qformat] ... sqc: evaluating line: 1 exercise scan/--qformat @src/hmmscan@ --qformat fasta %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --qformat fasta esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --qformat fasta esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --qformat fasta esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 139 [ scan/--cpu] ... sqc: evaluating line: 1 exercise scan/--cpu @src/hmmscan@ --cpu 2 %MINIFAM.HMM% !tutorial/HBB_HUMAN! 102s sqc: after filename subst, cmd is: ./src/hmmscan --cpu 2 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN 102s sqc: after output subst, cmd is: ./src/hmmscan --cpu 2 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/hmmscan --cpu 2 esltmpaa3042.MINIFAM.HMM ./testsuite/../tutorial/HBB_HUMAN > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 140 [ jackhmmer] ... sqc: evaluating line: 1 exercise jackhmmer @src/jackhmmer@ --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 141 [ j/-h] ... sqc: evaluating line: 1 exercise j/-h @src/jackhmmer@ -h 102s sqc: after filename subst, cmd is: ./src/jackhmmer -h 102s sqc: after output subst, cmd is: ./src/jackhmmer -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer -h > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 142 [ j/-N] ... sqc: evaluating line: 1 exercise j/-N @src/jackhmmer@ -N 2 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer -N 2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer -N 2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer -N 2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 143 [ j/-o] ... sqc: evaluating line: 1 exercise j/-o @src/jackhmmer@ -o %JHMMER.out% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer -o esltmpaa3042.JHMMER.out --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer -o esltmpaa3042.JHMMER.out --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer -o esltmpaa3042.JHMMER.out --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 144 [ j/-A] ... sqc: evaluating line: 1 exercise j/-A @src/jackhmmer@ -A %JHMMER.sto% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer -A esltmpaa3042.JHMMER.sto --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer -A esltmpaa3042.JHMMER.sto --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer -A esltmpaa3042.JHMMER.sto --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 145 [ j/--tblout] ... sqc: evaluating line: 1 exercise j/--tblout @src/jackhmmer@ --tblout %JHMMER.tbl% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --tblout esltmpaa3042.JHMMER.tbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --tblout esltmpaa3042.JHMMER.tbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --tblout esltmpaa3042.JHMMER.tbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 146 [ j/--domtblout] ... sqc: evaluating line: 1 exercise j/--domtblout @src/jackhmmer@ --domtblout %JHMMER.dtbl% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --domtblout esltmpaa3042.JHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --domtblout esltmpaa3042.JHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --domtblout esltmpaa3042.JHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 147 [ j/--chkhmm] ... sqc: evaluating line: 1 exercise j/--chkhmm @src/jackhmmer@ --chkhmm %JHMMER.ch% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --chkhmm esltmpaa3042.JHMMER.ch --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --chkhmm esltmpaa3042.JHMMER.ch --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --chkhmm esltmpaa3042.JHMMER.ch --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 148 [ j/--chkali] ... sqc: evaluating line: 1 exercise j/--chkali @src/jackhmmer@ --chkali %JHMMER.ca% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --chkali esltmpaa3042.JHMMER.ca --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --chkali esltmpaa3042.JHMMER.ca --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --chkali esltmpaa3042.JHMMER.ca --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 149 [ j/--acc] ... sqc: evaluating line: 1 exercise j/--acc @src/jackhmmer@ --acc --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --acc --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --acc --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --acc --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 150 [ j/--noali] ... sqc: evaluating line: 1 exercise j/--noali @src/jackhmmer@ --noali --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --noali --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --noali --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --noali --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 151 [ j/--notextw] ... sqc: evaluating line: 1 exercise j/--notextw @src/jackhmmer@ --notextw --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --notextw --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --notextw --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --notextw --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 152 [ j/--textw] ... sqc: evaluating line: 1 exercise j/--textw @src/jackhmmer@ --textw 256 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --textw 256 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --textw 256 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --textw 256 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 153 [ j/--popen] ... sqc: evaluating line: 1 exercise j/--popen @src/jackhmmer@ --popen 0.4 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --popen 0.4 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --popen 0.4 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --popen 0.4 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 154 [ j/--pextend] ... sqc: evaluating line: 1 exercise j/--pextend @src/jackhmmer@ --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 155 [ j/--mxfile] ... sqc: evaluating line: 1 exercise j/--mxfile @src/jackhmmer@ --mxfile !easel/formats/BLOSUM62! --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --mxfile ./testsuite/../easel/formats/BLOSUM62 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --mxfile ./testsuite/../easel/formats/BLOSUM62 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --mxfile ./testsuite/../easel/formats/BLOSUM62 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 156 [ j/-E] ... sqc: evaluating line: 1 exercise j/-E @src/jackhmmer@ -E 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer -E 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer -E 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer -E 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 157 [ j/-T] ... sqc: evaluating line: 1 exercise j/-T @src/jackhmmer@ -T 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer -T 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer -T 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer -T 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 158 [ j/--domE] ... sqc: evaluating line: 1 exercise j/--domE @src/jackhmmer@ --domE 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --domE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --domE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --domE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 159 [ j/--domT] ... sqc: evaluating line: 1 exercise j/--domT @src/jackhmmer@ --domT 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --domT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --domT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --domT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 160 [ j/--incE] ... sqc: evaluating line: 1 exercise j/--incE @src/jackhmmer@ --incE 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --incE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --incE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --incE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 161 [ j/--incT] ... sqc: evaluating line: 1 exercise j/--incT @src/jackhmmer@ --incT 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --incT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --incT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --incT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 162 [ j/--incdomE] ... sqc: evaluating line: 1 exercise j/--incdomE @src/jackhmmer@ --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 163 [ j/--incdomT] ... sqc: evaluating line: 1 exercise j/--incdomT @src/jackhmmer@ --incdomT 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --incdomT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --incdomT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --incdomT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 164 [ j/--max] ... sqc: evaluating line: 1 exercise j/--max @src/jackhmmer@ --max --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --max --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --max --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --max --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 102s exercise 165 [ j/--F1] ... sqc: evaluating line: 1 exercise j/--F1 @src/jackhmmer@ --F1 0.03 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 102s sqc: after filename subst, cmd is: ./src/jackhmmer --F1 0.03 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 102s sqc: after output subst, cmd is: ./src/jackhmmer --F1 0.03 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: running cmd: ./src/jackhmmer --F1 0.03 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 102s sqc: return status 0 102s ok. 103s exercise 166 [ j/--F2] ... sqc: evaluating line: 1 exercise j/--F2 @src/jackhmmer@ --F2 0.002 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --F2 0.002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --F2 0.002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --F2 0.002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 167 [ j/--F3] ... sqc: evaluating line: 1 exercise j/--F3 @src/jackhmmer@ --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 168 [ j/--nobias] ... sqc: evaluating line: 1 exercise j/--nobias @src/jackhmmer@ --nobias --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --nobias --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --nobias --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --nobias --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 169 [ j/--EmL] ... sqc: evaluating line: 1 exercise j/--EmL @src/jackhmmer@ --EmL 100 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --EmL 100 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --EmL 100 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --EmL 100 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 170 [ j/--EmN] ... sqc: evaluating line: 1 exercise j/--EmN @src/jackhmmer@ --EmN 250 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --EmN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --EmN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --EmN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 171 [ j/--EvL] ... sqc: evaluating line: 1 exercise j/--EvL @src/jackhmmer@ --EvL 100 --EmL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --EvL 100 --EmL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --EvL 100 --EmL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --EvL 100 --EmL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 172 [ j/--EvN] ... sqc: evaluating line: 1 exercise j/--EvN @src/jackhmmer@ --EvN 250 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --EvN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --EvN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --EvN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 173 [ j/--EfL] ... sqc: evaluating line: 1 exercise j/--EfL @src/jackhmmer@ --EfL 100 --EmL 10 --EvL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --EfL 100 --EmL 10 --EvL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --EfL 100 --EmL 10 --EvL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --EfL 100 --EmL 10 --EvL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 174 [ j/--EfN] ... sqc: evaluating line: 1 exercise j/--EfN @src/jackhmmer@ --EfN 250 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --EfN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --EfN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --EfN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 175 [ j/--Eft] ... sqc: evaluating line: 1 exercise j/--Eft @src/jackhmmer@ --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 176 [ j/--nonull2] ... sqc: evaluating line: 1 exercise j/--nonull2 @src/jackhmmer@ --nonull2 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --nonull2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --nonull2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --nonull2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 177 [ j/-Z] ... sqc: evaluating line: 1 exercise j/-Z @src/jackhmmer@ -Z 45000000 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer -Z 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer -Z 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer -Z 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 178 [ j/--domZ] ... sqc: evaluating line: 1 exercise j/--domZ @src/jackhmmer@ --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 179 [ j/--seed] ... sqc: evaluating line: 1 exercise j/--seed @src/jackhmmer@ --seed 42 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --seed 42 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --seed 42 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --seed 42 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 180 [ j/--qformat] ... sqc: evaluating line: 1 exercise j/--qformat @src/jackhmmer@ --qformat fasta --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --qformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --qformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --qformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 181 [ j/--tformat] ... sqc: evaluating line: 1 exercise j/--tformat @src/jackhmmer@ --tformat fasta --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/jackhmmer --tformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/jackhmmer --tformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/jackhmmer --tformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s sqc: evaluating line: 1 prep cleanup rm -f %JHMMER.ch%-1.hmm %JHMMER.ca%-1.sto 103s sqc: after filename subst, cmd is: rm -f esltmpaa3042.JHMMER.ch-1.hmm esltmpaa3042.JHMMER.ca-1.sto 103s sqc: after output subst, cmd is: rm -f esltmpaa3042.JHMMER.ch-1.hmm esltmpaa3042.JHMMER.ca-1.sto > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: rm -f esltmpaa3042.JHMMER.ch-1.hmm esltmpaa3042.JHMMER.ca-1.sto > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s exercise 182 [ phmmer] ... sqc: evaluating line: 1 exercise phmmer @src/phmmer@ --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 183 [ phmmer/-h] ... sqc: evaluating line: 1 exercise phmmer/-h @src/phmmer@ -h 103s sqc: after filename subst, cmd is: ./src/phmmer -h 103s sqc: after output subst, cmd is: ./src/phmmer -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 184 [ phmmer/-o] ... sqc: evaluating line: 1 exercise phmmer/-o @src/phmmer@ -o %PHMMER.out% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer -o esltmpaa3042.PHMMER.out --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer -o esltmpaa3042.PHMMER.out --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer -o esltmpaa3042.PHMMER.out --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 185 [ phmmer/-A] ... sqc: evaluating line: 1 exercise phmmer/-A @src/phmmer@ -A %PHMMER.sto% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer -A esltmpaa3042.PHMMER.sto --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer -A esltmpaa3042.PHMMER.sto --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer -A esltmpaa3042.PHMMER.sto --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 186 [ phmmer/--tblout] ... sqc: evaluating line: 1 exercise phmmer/--tblout @src/phmmer@ --tblout %PHMMER.tbl% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --tblout esltmpaa3042.PHMMER.tbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --tblout esltmpaa3042.PHMMER.tbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --tblout esltmpaa3042.PHMMER.tbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 187 [ phmmer/--domtblout] ... sqc: evaluating line: 1 exercise phmmer/--domtblout @src/phmmer@ --domtblout %PHMMER.dtbl% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --domtblout esltmpaa3042.PHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --domtblout esltmpaa3042.PHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --domtblout esltmpaa3042.PHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 188 [ phmmer/--pfamtblout] ... sqc: evaluating line: 1 exercise phmmer/--pfamtblout @src/phmmer@ --pfamtblout %PHMMER.dtbl% --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --pfamtblout esltmpaa3042.PHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --pfamtblout esltmpaa3042.PHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --pfamtblout esltmpaa3042.PHMMER.dtbl --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 189 [ phmmer/--acc] ... sqc: evaluating line: 1 exercise phmmer/--acc @src/phmmer@ --acc --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --acc --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --acc --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --acc --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 190 [ phmmer/--noali] ... sqc: evaluating line: 1 exercise phmmer/--noali @src/phmmer@ --noali --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --noali --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --noali --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --noali --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 191 [ phmmer/--notextw] ... sqc: evaluating line: 1 exercise phmmer/--notextw @src/phmmer@ --notextw --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --notextw --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --notextw --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --notextw --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 192 [ phmmer/--textw] ... sqc: evaluating line: 1 exercise phmmer/--textw @src/phmmer@ --textw 256 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --textw 256 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --textw 256 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --textw 256 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 193 [ phmmer/--popen] ... sqc: evaluating line: 1 exercise phmmer/--popen @src/phmmer@ --popen 0.4 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --popen 0.4 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --popen 0.4 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --popen 0.4 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 194 [ phmmer/--pextend] ... sqc: evaluating line: 1 exercise phmmer/--pextend @src/phmmer@ --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --pextend 0.6 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 195 [ phmmer/--mxfile] ... sqc: evaluating line: 1 exercise phmmer/--mxfile @src/phmmer@ --mxfile !easel/formats/BLOSUM62! --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --mxfile ./testsuite/../easel/formats/BLOSUM62 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --mxfile ./testsuite/../easel/formats/BLOSUM62 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --mxfile ./testsuite/../easel/formats/BLOSUM62 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 196 [ phmmer/-E] ... sqc: evaluating line: 1 exercise phmmer/-E @src/phmmer@ -E 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer -E 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer -E 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer -E 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 197 [ phmmer/-T] ... sqc: evaluating line: 1 exercise phmmer/-T @src/phmmer@ -T 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer -T 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer -T 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer -T 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 198 [ phmmer/--domE] ... sqc: evaluating line: 1 exercise phmmer/--domE @src/phmmer@ --domE 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --domE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --domE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --domE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 199 [ phmmer/--domT] ... sqc: evaluating line: 1 exercise phmmer/--domT @src/phmmer@ --domT 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --domT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --domT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --domT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 200 [ phmmer/--incE] ... sqc: evaluating line: 1 exercise phmmer/--incE @src/phmmer@ --incE 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --incE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --incE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --incE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 201 [ phmmer/--incT] ... sqc: evaluating line: 1 exercise phmmer/--incT @src/phmmer@ --incT 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --incT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --incT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --incT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 202 [ phmmer/--incdomE] ... sqc: evaluating line: 1 exercise phmmer/--incdomE @src/phmmer@ --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --incdomE 0.01 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 203 [ phmmer/--incdomT] ... sqc: evaluating line: 1 exercise phmmer/--incdomT @src/phmmer@ --incdomT 20 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --incdomT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --incdomT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --incdomT 20 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 204 [ phmmer/--max] ... sqc: evaluating line: 1 exercise phmmer/--max @src/phmmer@ --max --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --max --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --max --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --max --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 205 [ phmmer/--F1] ... sqc: evaluating line: 1 exercise phmmer/--F1 @src/phmmer@ --F1 0.03 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --F1 0.03 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --F1 0.03 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --F1 0.03 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 206 [ phmmer/--F2] ... sqc: evaluating line: 1 exercise phmmer/--F2 @src/phmmer@ --F2 0.002 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --F2 0.002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --F2 0.002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --F2 0.002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 207 [ phmmer/--F3] ... sqc: evaluating line: 1 exercise phmmer/--F3 @src/phmmer@ --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --F3 0.0002 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 208 [ phmmer/--nobias] ... sqc: evaluating line: 1 exercise phmmer/--nobias @src/phmmer@ --nobias --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --nobias --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --nobias --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --nobias --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 209 [ phmmer/--EmL] ... sqc: evaluating line: 1 exercise phmmer/--EmL @src/phmmer@ --EmL 100 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EmL 100 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EmL 100 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EmL 100 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 210 [ phmmer/--EmN] ... sqc: evaluating line: 1 exercise phmmer/--EmN @src/phmmer@ --EmN 250 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EmN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EmN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EmN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 211 [ phmmer/--EvL] ... sqc: evaluating line: 1 exercise phmmer/--EvL @src/phmmer@ --EvL 100 --EmL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EvL 100 --EmL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EvL 100 --EmL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EvL 100 --EmL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 212 [ phmmer/--EvN] ... sqc: evaluating line: 1 exercise phmmer/--EvN @src/phmmer@ --EvN 250 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EvN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EvN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EvN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 213 [ phmmer/--EfL] ... sqc: evaluating line: 1 exercise phmmer/--EfL @src/phmmer@ --EfL 100 --EmL 10 --EvL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EfL 100 --EmL 10 --EvL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EfL 100 --EmL 10 --EvL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EfL 100 --EmL 10 --EvL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 214 [ phmmer/--EfN] ... sqc: evaluating line: 1 exercise phmmer/--EfN @src/phmmer@ --EfN 250 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --EfN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --EfN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --EfN 250 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 215 [ phmmer/--Eft] ... sqc: evaluating line: 1 exercise phmmer/--Eft @src/phmmer@ --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --Eft 0.045 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 216 [ phmmer/--nonull2] ... sqc: evaluating line: 1 exercise phmmer/--nonull2 @src/phmmer@ --nonull2 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --nonull2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --nonull2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --nonull2 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 217 [ phmmer/-Z] ... sqc: evaluating line: 1 exercise phmmer/-Z @src/phmmer@ -Z 45000000 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer -Z 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer -Z 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer -Z 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 218 [ phmmer/--domZ] ... sqc: evaluating line: 1 exercise phmmer/--domZ @src/phmmer@ --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --domZ 45000000 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 219 [ phmmer/--seed] ... sqc: evaluating line: 1 exercise phmmer/--seed @src/phmmer@ --seed 42 --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --seed 42 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --seed 42 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --seed 42 --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 220 [ phmmer/--qformat] ... sqc: evaluating line: 1 exercise phmmer/--qformat @src/phmmer@ --qformat fasta --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --qformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --qformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --qformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 221 [ phmmer/--tformat] ... sqc: evaluating line: 1 exercise phmmer/--tformat @src/phmmer@ --tformat fasta --EmL 10 --EvL 10 --EfL 10 !tutorial/HBB_HUMAN! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/phmmer --tformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/phmmer --tformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/phmmer --tformat fasta --EmL 10 --EvL 10 --EfL 10 ./testsuite/../tutorial/HBB_HUMAN esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s sqc: evaluating line: 1 prep rnddb @easel/miniapps/esl-shuffle@ -G --dna -L 10000 -N 2 -o %RNDDB% 103s sqc: after filename subst, cmd is: ./easel/miniapps/esl-shuffle -G --dna -L 10000 -N 2 -o esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./easel/miniapps/esl-shuffle -G --dna -L 10000 -N 2 -o esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./easel/miniapps/esl-shuffle -G --dna -L 10000 -N 2 -o esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s exercise 222 [ nhmmer] ... sqc: evaluating line: 1 exercise nhmmer @src/nhmmer@ !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 223 [ nhmmer/-h] ... sqc: evaluating line: 1 exercise nhmmer/-h @src/nhmmer@ -h 103s sqc: after filename subst, cmd is: ./src/nhmmer -h 103s sqc: after output subst, cmd is: ./src/nhmmer -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 224 [ nhmmer/-o] ... sqc: evaluating line: 1 exercise nhmmer/-o @src/nhmmer@ -o %nhmmer.out% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer -o esltmpaa3042.nhmmer.out ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer -o esltmpaa3042.nhmmer.out ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer -o esltmpaa3042.nhmmer.out ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 225 [ nhmmer/-A] ... sqc: evaluating line: 1 exercise nhmmer/-A @src/nhmmer@ -A %nhmmer.sto% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer -A esltmpaa3042.nhmmer.sto ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer -A esltmpaa3042.nhmmer.sto ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer -A esltmpaa3042.nhmmer.sto ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 226 [ nhmmer/--tblout] ... sqc: evaluating line: 1 exercise nhmmer/--tblout @src/nhmmer@ --tblout %nhmmer.tbl% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --tblout esltmpaa3042.nhmmer.tbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --tblout esltmpaa3042.nhmmer.tbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --tblout esltmpaa3042.nhmmer.tbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 227 [ nhmmer/--dfamtblout] ... sqc: evaluating line: 1 exercise nhmmer/--dfamtblout @src/nhmmer@ --dfamtblout %nhmmer.dtbl% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --dfamtblout esltmpaa3042.nhmmer.dtbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --dfamtblout esltmpaa3042.nhmmer.dtbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --dfamtblout esltmpaa3042.nhmmer.dtbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 228 [ nhmmer/--acc] ... sqc: evaluating line: 1 exercise nhmmer/--acc @src/nhmmer@ --acc !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --acc ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --acc ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --acc ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 229 [ nhmmer/--noali] ... sqc: evaluating line: 1 exercise nhmmer/--noali @src/nhmmer@ --noali !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --noali ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --noali ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --noali ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 230 [ nhmmer/--notextw] ... sqc: evaluating line: 1 exercise nhmmer/--notextw @src/nhmmer@ --notextw !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --notextw ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --notextw ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --notextw ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 231 [ nhmmer/--textw] ... sqc: evaluating line: 1 exercise nhmmer/--textw @src/nhmmer@ --textw 256 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --textw 256 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --textw 256 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --textw 256 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 232 [ nhmmer/-E] ... sqc: evaluating line: 1 exercise nhmmer/-E @src/nhmmer@ -E 0.01 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer -E 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer -E 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer -E 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 233 [ nhmmer/-T] ... sqc: evaluating line: 1 exercise nhmmer/-T @src/nhmmer@ -T 20 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer -T 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer -T 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer -T 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 234 [ nhmmer/--incE] ... sqc: evaluating line: 1 exercise nhmmer/--incE @src/nhmmer@ --incE 0.01 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --incE 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --incE 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --incE 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 235 [ nhmmer/--incT] ... sqc: evaluating line: 1 exercise nhmmer/--incT @src/nhmmer@ --incT 20 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --incT 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --incT 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --incT 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 236 [ nhmmer/--max] ... sqc: evaluating line: 1 exercise nhmmer/--max @src/nhmmer@ --max !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --max ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --max ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --max ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 237 [ nhmmer/--F1] ... sqc: evaluating line: 1 exercise nhmmer/--F1 @src/nhmmer@ --F1 0.03 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --F1 0.03 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --F1 0.03 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --F1 0.03 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 238 [ nhmmer/--F2] ... sqc: evaluating line: 1 exercise nhmmer/--F2 @src/nhmmer@ --F2 0.002 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --F2 0.002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --F2 0.002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --F2 0.002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 239 [ nhmmer/--F3] ... sqc: evaluating line: 1 exercise nhmmer/--F3 @src/nhmmer@ --F3 0.0002 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --F3 0.0002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --F3 0.0002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --F3 0.0002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 240 [ nhmmer/--nobias] ... sqc: evaluating line: 1 exercise nhmmer/--nobias @src/nhmmer@ --nobias !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --nobias ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --nobias ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --nobias ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 241 [ nhmmer/--nonull2] ... sqc: evaluating line: 1 exercise nhmmer/--nonull2 @src/nhmmer@ --nonull2 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --nonull2 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --nonull2 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --nonull2 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 242 [ nhmmer/-Z] ... sqc: evaluating line: 1 exercise nhmmer/-Z @src/nhmmer@ -Z 45000000 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer -Z 45000000 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer -Z 45000000 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer -Z 45000000 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 243 [ nhmmer/--seed] ... sqc: evaluating line: 1 exercise nhmmer/--seed @src/nhmmer@ --seed 42 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmer --seed 42 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmer --seed 42 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmer --seed 42 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s sqc: evaluating line: 1 prep rnddb @easel/miniapps/esl-shuffle@ -G --dna -L 10000 -N 2 -o %RNDDB% 103s sqc: after filename subst, cmd is: ./easel/miniapps/esl-shuffle -G --dna -L 10000 -N 2 -o esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./easel/miniapps/esl-shuffle -G --dna -L 10000 -N 2 -o esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./easel/miniapps/esl-shuffle -G --dna -L 10000 -N 2 -o esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s sqc: evaluating line: 1 prep press @src/hmmpress@ -f !tutorial/MADE1.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmpress -f ./testsuite/../tutorial/MADE1.hmm 103s sqc: after output subst, cmd is: ./src/hmmpress -f ./testsuite/../tutorial/MADE1.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmpress -f ./testsuite/../tutorial/MADE1.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s exercise 244 [ nhmmscan] ... sqc: evaluating line: 1 exercise nhmmscan @src/nhmmscan@ !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 245 [ nhmmscan/-h] ... sqc: evaluating line: 1 exercise nhmmscan/-h @src/nhmmscan@ -h 103s sqc: after filename subst, cmd is: ./src/nhmmscan -h 103s sqc: after output subst, cmd is: ./src/nhmmscan -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 246 [ nhmmscan/-o] ... sqc: evaluating line: 1 exercise nhmmscan/-o @src/nhmmscan@ -o %nhmmscan.out% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan -o esltmpaa3042.nhmmscan.out ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan -o esltmpaa3042.nhmmscan.out ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan -o esltmpaa3042.nhmmscan.out ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 247 [ nhmmscan/--tblout] ... sqc: evaluating line: 1 exercise nhmmscan/--tblout @src/nhmmscan@ --tblout %nhmmscan.tbl% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --tblout esltmpaa3042.nhmmscan.tbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --tblout esltmpaa3042.nhmmscan.tbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --tblout esltmpaa3042.nhmmscan.tbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 248 [nhmmscan/--dfamtblout] ... sqc: evaluating line: 1 exercise nhmmscan/--dfamtblout @src/nhmmscan@ --dfamtblout %nhmmscan.dtbl% !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --dfamtblout esltmpaa3042.nhmmscan.dtbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --dfamtblout esltmpaa3042.nhmmscan.dtbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --dfamtblout esltmpaa3042.nhmmscan.dtbl ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 249 [ nhmmscan/--acc] ... sqc: evaluating line: 1 exercise nhmmscan/--acc @src/nhmmscan@ --acc !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --acc ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --acc ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --acc ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 250 [ nhmmscan/--noali] ... sqc: evaluating line: 1 exercise nhmmscan/--noali @src/nhmmscan@ --noali !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --noali ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --noali ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --noali ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 251 [ nhmmscan/--notextw] ... sqc: evaluating line: 1 exercise nhmmscan/--notextw @src/nhmmscan@ --notextw !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --notextw ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --notextw ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --notextw ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 252 [ nhmmscan/--textw] ... sqc: evaluating line: 1 exercise nhmmscan/--textw @src/nhmmscan@ --textw 256 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --textw 256 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --textw 256 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --textw 256 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 253 [ nhmmscan/-E] ... sqc: evaluating line: 1 exercise nhmmscan/-E @src/nhmmscan@ -E 0.01 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan -E 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan -E 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan -E 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 254 [ nhmmscan/-T] ... sqc: evaluating line: 1 exercise nhmmscan/-T @src/nhmmscan@ -T 20 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan -T 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan -T 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan -T 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 255 [ nhmmscan/--incE] ... sqc: evaluating line: 1 exercise nhmmscan/--incE @src/nhmmscan@ --incE 0.01 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --incE 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --incE 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --incE 0.01 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 256 [ nhmmscan/--incT] ... sqc: evaluating line: 1 exercise nhmmscan/--incT @src/nhmmscan@ --incT 20 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --incT 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --incT 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --incT 20 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 257 [ nhmmscan/--max] ... sqc: evaluating line: 1 exercise nhmmscan/--max @src/nhmmscan@ --max !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --max ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --max ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --max ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 258 [ nhmmscan/--F1] ... sqc: evaluating line: 1 exercise nhmmscan/--F1 @src/nhmmscan@ --F1 0.03 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --F1 0.03 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --F1 0.03 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --F1 0.03 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 259 [ nhmmscan/--F2] ... sqc: evaluating line: 1 exercise nhmmscan/--F2 @src/nhmmscan@ --F2 0.002 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --F2 0.002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --F2 0.002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --F2 0.002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 260 [ nhmmscan/--F3] ... sqc: evaluating line: 1 exercise nhmmscan/--F3 @src/nhmmscan@ --F3 0.0002 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --F3 0.0002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --F3 0.0002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --F3 0.0002 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 261 [ nhmmscan/--nobias] ... sqc: evaluating line: 1 exercise nhmmscan/--nobias @src/nhmmscan@ --nobias !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --nobias ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --nobias ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --nobias ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 262 [ nhmmscan/--nonull2] ... sqc: evaluating line: 1 exercise nhmmscan/--nonull2 @src/nhmmscan@ --nonull2 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --nonull2 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --nonull2 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --nonull2 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 263 [ nhmmscan/-Z] ... sqc: evaluating line: 1 exercise nhmmscan/-Z @src/nhmmscan@ -Z 45000000 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan -Z 45000000 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan -Z 45000000 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan -Z 45000000 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 264 [ nhmmscan/--seed] ... sqc: evaluating line: 1 exercise nhmmscan/--seed @src/nhmmscan@ --seed 42 !tutorial/MADE1.hmm! %RNDDB% 103s sqc: after filename subst, cmd is: ./src/nhmmscan --seed 42 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB 103s sqc: after output subst, cmd is: ./src/nhmmscan --seed 42 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/nhmmscan --seed 42 ./testsuite/../tutorial/MADE1.hmm esltmpaa3042.RNDDB > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s sqc: evaluating line: 1 prep cleanup rm !tutorial/MADE1.hmm!.h3? 103s sqc: after filename subst, cmd is: rm ./testsuite/../tutorial/MADE1.hmm.h3? 103s sqc: after output subst, cmd is: rm ./testsuite/../tutorial/MADE1.hmm.h3? > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: rm ./testsuite/../tutorial/MADE1.hmm.h3? > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s exercise 265 [ hmmemit] ... sqc: evaluating line: 1 exercise hmmemit @src/hmmemit@ !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 266 [ hmmemit/-h] ... sqc: evaluating line: 1 exercise hmmemit/-h @src/hmmemit@ -h 103s sqc: after filename subst, cmd is: ./src/hmmemit -h 103s sqc: after output subst, cmd is: ./src/hmmemit -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -h > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 267 [ hmmemit/-c] ... sqc: evaluating line: 1 exercise hmmemit/-c @src/hmmemit@ -c !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -c ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -c ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -c ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 268 [ hmmemit/-o] ... sqc: evaluating line: 1 exercise hmmemit/-o @src/hmmemit@ -o /dev/null !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -o /dev/null ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -o /dev/null ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -o /dev/null ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 269 [ hmmemit/-p] ... sqc: evaluating line: 1 exercise hmmemit/-p @src/hmmemit@ -p !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -p ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -p ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -p ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 270 [ hmmemit/-N] ... sqc: evaluating line: 1 exercise hmmemit/-N @src/hmmemit@ -N 10 !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -N 10 ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -N 10 ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -N 10 ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 271 [ hmmemit/-L] ... sqc: evaluating line: 1 exercise hmmemit/-L @src/hmmemit@ -p -L 50 !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -p -L 50 ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -p -L 50 ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -p -L 50 ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 272 [ hmmemit/--local] ... sqc: evaluating line: 1 exercise hmmemit/--local @src/hmmemit@ -p --local !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -p --local ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -p --local ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -p --local ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 273 [ hmmemit/--unilocal] ... sqc: evaluating line: 1 exercise hmmemit/--unilocal @src/hmmemit@ -p --unilocal !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -p --unilocal ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -p --unilocal ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -p --unilocal ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 274 [ hmmemit/--glocal] ... sqc: evaluating line: 1 exercise hmmemit/--glocal @src/hmmemit@ -p --glocal !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -p --glocal ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -p --glocal ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -p --glocal ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 275 [ hmmemit/--uniglocal] ... sqc: evaluating line: 1 exercise hmmemit/--uniglocal @src/hmmemit@ -p --uniglocal !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmemit -p --uniglocal ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmemit -p --uniglocal ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit -p --uniglocal ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 276 [ hmmfetch] ... sqc: evaluating line: 1 exercise hmmfetch @src/hmmfetch@ %MINIFAM.HMM% Caudal_act 103s sqc: after filename subst, cmd is: ./src/hmmfetch esltmpaa3042.MINIFAM.HMM Caudal_act 103s sqc: after output subst, cmd is: ./src/hmmfetch esltmpaa3042.MINIFAM.HMM Caudal_act > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmfetch esltmpaa3042.MINIFAM.HMM Caudal_act > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 277 [ hmmstat] ... sqc: evaluating line: 1 exercise hmmstat @src/hmmstat@ !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmstat ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmstat ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmstat ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 278 [ hmmlogo] ... sqc: evaluating line: 1 exercise hmmlogo @src/hmmlogo@ !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmlogo ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmlogo ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmlogo ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 279 [ hmmconvert] ... sqc: evaluating line: 1 exercise hmmconvert @src/hmmconvert@ !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmconvert ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmconvert ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmconvert ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 280 [ hmmsim] ... sqc: evaluating line: 1 exercise hmmsim @src/hmmsim@ !testsuite/Caudal_act.hmm! 103s sqc: after filename subst, cmd is: ./src/hmmsim ./testsuite/../testsuite/Caudal_act.hmm 103s sqc: after output subst, cmd is: ./src/hmmsim ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmsim ./testsuite/../testsuite/Caudal_act.hmm > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s sqc: evaluating line: 1 prep seq @src/hmmemit@ --seed 35 -p %CAUDAL.HMM% > %TESTSEQ% 103s sqc: after filename subst, cmd is: ./src/hmmemit --seed 35 -p esltmpaa3042.CAUDAL.HMM > esltmpaa3042.TESTSEQ 103s sqc: after output subst, cmd is: ./src/hmmemit --seed 35 -p esltmpaa3042.CAUDAL.HMM > esltmpaa3042.TESTSEQ 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit --seed 35 -p esltmpaa3042.CAUDAL.HMM > esltmpaa3042.TESTSEQ 2> esltmpaa3042.stderr 103s sqc: return status 0 103s sqc: evaluating line: 1 prep db_1 @src/hmmemit@ --seed 35 -p %CAUDAL.HMM% > %TESTDB% 103s sqc: after filename subst, cmd is: ./src/hmmemit --seed 35 -p esltmpaa3042.CAUDAL.HMM > esltmpaa3042.TESTDB 103s sqc: after output subst, cmd is: ./src/hmmemit --seed 35 -p esltmpaa3042.CAUDAL.HMM > esltmpaa3042.TESTDB 2> esltmpaa3042.stderr 103s sqc: running cmd: ./src/hmmemit --seed 35 -p esltmpaa3042.CAUDAL.HMM > esltmpaa3042.TESTDB 2> esltmpaa3042.stderr 103s sqc: return status 0 103s sqc: evaluating line: 1 prep db_2 @easel/miniapps/esl-reformat@ fasta !testsuite/Caudal_act.sto! >> %TESTDB% 103s sqc: after filename subst, cmd is: ./easel/miniapps/esl-reformat fasta ./testsuite/../testsuite/Caudal_act.sto >> esltmpaa3042.TESTDB 103s sqc: after output subst, cmd is: ./easel/miniapps/esl-reformat fasta ./testsuite/../testsuite/Caudal_act.sto >> esltmpaa3042.TESTDB 2> esltmpaa3042.stderr 103s sqc: running cmd: ./easel/miniapps/esl-reformat fasta ./testsuite/../testsuite/Caudal_act.sto >> esltmpaa3042.TESTDB 2> esltmpaa3042.stderr 103s sqc: return status 0 103s sqc: evaluating line: 1 prep db_3 @easel/miniapps/esl-shuffle@ -G --amino -N 100 -L 350 >> %TESTDB% 103s sqc: after filename subst, cmd is: ./easel/miniapps/esl-shuffle -G --amino -N 100 -L 350 >> esltmpaa3042.TESTDB 103s sqc: after output subst, cmd is: ./easel/miniapps/esl-shuffle -G --amino -N 100 -L 350 >> esltmpaa3042.TESTDB 2> esltmpaa3042.stderr 103s sqc: running cmd: ./easel/miniapps/esl-shuffle -G --amino -N 100 -L 350 >> esltmpaa3042.TESTDB 2> esltmpaa3042.stderr 103s sqc: return status 0 103s exercise 281 [ hmmbuild_variation] ... sqc: evaluating line: 1 exercise hmmbuild_variation !testsuite/i1-build-variation.sh! @src/hmmbuild@ !testsuite/Caudal_act.sto! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i1-build-variation.sh ./src/hmmbuild ./testsuite/../testsuite/Caudal_act.sto esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i1-build-variation.sh ./src/hmmbuild ./testsuite/../testsuite/Caudal_act.sto esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i1-build-variation.sh ./src/hmmbuild ./testsuite/../testsuite/Caudal_act.sto esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 282 [ hmmscan_variation] ... sqc: evaluating line: 1 exercise hmmscan_variation !testsuite/i2-search-variation.sh! @src/hmmscan@ %MINIFAM.HMM% %TESTSEQ% %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i2-search-variation.sh ./src/hmmscan esltmpaa3042.MINIFAM.HMM esltmpaa3042.TESTSEQ esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i2-search-variation.sh ./src/hmmscan esltmpaa3042.MINIFAM.HMM esltmpaa3042.TESTSEQ esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i2-search-variation.sh ./src/hmmscan esltmpaa3042.MINIFAM.HMM esltmpaa3042.TESTSEQ esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 283 [ hmmsearch_variation] ... sqc: evaluating line: 1 exercise hmmsearch_variation !testsuite/i2-search-variation.sh! @src/hmmsearch@ %CAUDAL.HMM% %TESTDB% %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i2-search-variation.sh ./src/hmmsearch esltmpaa3042.CAUDAL.HMM esltmpaa3042.TESTDB esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i2-search-variation.sh ./src/hmmsearch esltmpaa3042.CAUDAL.HMM esltmpaa3042.TESTDB esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i2-search-variation.sh ./src/hmmsearch esltmpaa3042.CAUDAL.HMM esltmpaa3042.TESTDB esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 284 [ phmmer_variation] ... sqc: evaluating line: 1 exercise phmmer_variation !testsuite/i3-seqsearch-variation.sh! @src/phmmer@ %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i3-seqsearch-variation.sh ./src/phmmer esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i3-seqsearch-variation.sh ./src/phmmer esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i3-seqsearch-variation.sh ./src/phmmer esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 285 [ mapali] ... sqc: evaluating line: 1 exercise mapali !testsuite/i6-hmmalign-mapali.pl! @src/hmmalign@ @easel/miniapps/esl-reformat@ !testsuite! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i6-hmmalign-mapali.pl ./src/hmmalign ./easel/miniapps/esl-reformat ./testsuite/../testsuite esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i6-hmmalign-mapali.pl ./src/hmmalign ./easel/miniapps/esl-reformat ./testsuite/../testsuite esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i6-hmmalign-mapali.pl ./src/hmmalign ./easel/miniapps/esl-reformat ./testsuite/../testsuite esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 286 [ fragments] ... sqc: evaluating line: 1 exercise fragments !testsuite/i7-hmmbuild-fragments.pl! @src/hmmbuild@ %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i7-hmmbuild-fragments.pl ./src/hmmbuild esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i7-hmmbuild-fragments.pl ./src/hmmbuild esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i7-hmmbuild-fragments.pl ./src/hmmbuild esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 287 [ nonresidues] ... sqc: evaluating line: 1 exercise nonresidues !testsuite/i8-nonresidues.pl! @@ !! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i8-nonresidues.pl . ./testsuite/.. esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i8-nonresidues.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i8-nonresidues.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 288 [ opt-annotation] ... sqc: evaluating line: 1 exercise opt-annotation !testsuite/i9-optional-annotation.pl! @@ !! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i9-optional-annotation.pl . ./testsuite/.. esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i9-optional-annotation.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i9-optional-annotation.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 289 [ dup-names] ... sqc: evaluating line: 1 exercise dup-names !testsuite/i10-duplicate-names.pl! @@ !! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i10-duplicate-names.pl . ./testsuite/.. esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i10-duplicate-names.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i10-duplicate-names.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 290 [ mapali-again] ... sqc: evaluating line: 1 exercise mapali-again !testsuite/i11-hmmalign-mapali.pl! @@ !! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i11-hmmalign-mapali.pl . ./testsuite/.. esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i11-hmmalign-mapali.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i11-hmmalign-mapali.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 291 [ delete-corruption] ... sqc: evaluating line: 1 exercise delete-corruption !testsuite/i12-delete-corruption.pl! @@ !! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i12-delete-corruption.pl . ./testsuite/.. esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i12-delete-corruption.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i12-delete-corruption.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: return status 0 103s ok. 103s exercise 292 [ msa-integrity] ... sqc: evaluating line: 1 exercise msa-integrity !testsuite/i13-msa-integrity.pl! @@ !! %OUTFILES% 103s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i13-msa-integrity.pl . ./testsuite/.. esltmpaa3042.OUTFILES 103s sqc: after output subst, cmd is: ./testsuite/../testsuite/i13-msa-integrity.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 103s sqc: running cmd: ./testsuite/../testsuite/i13-msa-integrity.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: return status 0 104s ok. 104s exercise 293 [ hmmemit-consensus] ... sqc: evaluating line: 1 exercise hmmemit-consensus !testsuite/i14-hmmemit-consensus.pl! @@ !! %OUTFILES% 104s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i14-hmmemit-consensus.pl . ./testsuite/.. esltmpaa3042.OUTFILES 104s sqc: after output subst, cmd is: ./testsuite/../testsuite/i14-hmmemit-consensus.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: running cmd: ./testsuite/../testsuite/i14-hmmemit-consensus.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: return status 0 104s ok. 104s exercise 294 [ hmmconvert] ... sqc: evaluating line: 1 exercise hmmconvert !testsuite/i15-hmmconvert.pl! @@ !! %OUTFILES% 104s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i15-hmmconvert.pl . ./testsuite/.. esltmpaa3042.OUTFILES 104s sqc: after output subst, cmd is: ./testsuite/../testsuite/i15-hmmconvert.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: running cmd: ./testsuite/../testsuite/i15-hmmconvert.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: return status 0 104s ok. 104s exercise 295 [ stdin_pipes] ... sqc: evaluating line: 1 exercise stdin_pipes !testsuite/i17-stdin.pl! @@ !! %OUTFILES% 104s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i17-stdin.pl . ./testsuite/.. esltmpaa3042.OUTFILES 104s sqc: after output subst, cmd is: ./testsuite/../testsuite/i17-stdin.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: running cmd: ./testsuite/../testsuite/i17-stdin.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: return status 0 104s ok. 104s exercise 296 [ nhmmer_generic] ... sqc: evaluating line: 1 exercise nhmmer_generic !testsuite/i18-nhmmer-generic.pl! @@ !! %OUTFILES% 104s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i18-nhmmer-generic.pl . ./testsuite/.. esltmpaa3042.OUTFILES 104s sqc: after output subst, cmd is: ./testsuite/../testsuite/i18-nhmmer-generic.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: running cmd: ./testsuite/../testsuite/i18-nhmmer-generic.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: return status 0 104s ok. 104s exercise 297 [ hmmpgmd_ga] ... sqc: evaluating line: 1 exercise hmmpgmd_ga !testsuite/i19-hmmpgmd-ga.pl! @@ !! %OUTFILES% 104s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i19-hmmpgmd-ga.pl . ./testsuite/.. esltmpaa3042.OUTFILES 104s sqc: after output subst, cmd is: ./testsuite/../testsuite/i19-hmmpgmd-ga.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 104s sqc: running cmd: ./testsuite/../testsuite/i19-hmmpgmd-ga.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 108s sqc: return status 0 108s ok. 108s exercise 298 [ rewind] ... sqc: evaluating line: 1 exercise rewind !testsuite/i21-rewind.pl! @@ !! %OUTFILES% 108s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i21-rewind.pl . ./testsuite/.. esltmpaa3042.OUTFILES 108s sqc: after output subst, cmd is: ./testsuite/../testsuite/i21-rewind.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 108s sqc: running cmd: ./testsuite/../testsuite/i21-rewind.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 108s sqc: return status 0 108s ok. 108s exercise 299 [ hmmpgmd_shard_ga] ... sqc: evaluating line: 1 exercise hmmpgmd_shard_ga !testsuite/i22-hmmpgmd-shard-ga.pl! @@ !! %OUTFILES% 108s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i22-hmmpgmd-shard-ga.pl . ./testsuite/.. esltmpaa3042.OUTFILES 108s sqc: after output subst, cmd is: ./testsuite/../testsuite/i22-hmmpgmd-shard-ga.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 108s sqc: running cmd: ./testsuite/../testsuite/i22-hmmpgmd-shard-ga.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 108s sqc: return status 0 108s ok. 108s exercise 300 [ bad-fasta] ... sqc: evaluating line: 1 exercise bad-fasta !testsuite/i23-bad-fasta.sh! @@ !! %OUTFILES% 108s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i23-bad-fasta.sh . ./testsuite/.. esltmpaa3042.OUTFILES 108s sqc: after output subst, cmd is: ./testsuite/../testsuite/i23-bad-fasta.sh . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 108s sqc: running cmd: ./testsuite/../testsuite/i23-bad-fasta.sh . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 301 [ brute-itest] ... sqc: evaluating line: 1 exercise brute-itest @src/itest_brute@ 109s sqc: after filename subst, cmd is: ./src/itest_brute 109s sqc: after output subst, cmd is: ./src/itest_brute > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./src/itest_brute > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 302 [ hmmpress-itest] ... sqc: evaluating line: 1 exercise hmmpress-itest !src/hmmpress.itest.pl! @src/hmmpress@ %MINIFAM.HMM% %TMPPFX% 109s sqc: after filename subst, cmd is: ./testsuite/../src/hmmpress.itest.pl ./src/hmmpress esltmpaa3042.MINIFAM.HMM esltmpaa3042.TMPPFX 109s sqc: after output subst, cmd is: ./testsuite/../src/hmmpress.itest.pl ./src/hmmpress esltmpaa3042.MINIFAM.HMM esltmpaa3042.TMPPFX > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./testsuite/../src/hmmpress.itest.pl ./src/hmmpress esltmpaa3042.MINIFAM.HMM esltmpaa3042.TMPPFX > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 303 [ h39] ... sqc: evaluating line: 1 exercise h39 @src/hmmsearch@ !testsuite/M1.hmm! !testsuite/M1.sto! 109s sqc: after filename subst, cmd is: ./src/hmmsearch ./testsuite/../testsuite/M1.hmm ./testsuite/../testsuite/M1.sto 109s sqc: after output subst, cmd is: ./src/hmmsearch ./testsuite/../testsuite/M1.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./src/hmmsearch ./testsuite/../testsuite/M1.hmm ./testsuite/../testsuite/M1.sto > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 304 [ h45] ... sqc: evaluating line: 1 exercise h45 !testsuite/i4-zerolength-seqs.sh! @@ !! %MINIFAM.HMM% %OUTFILES% 109s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i4-zerolength-seqs.sh . ./testsuite/.. esltmpaa3042.MINIFAM.HMM esltmpaa3042.OUTFILES 109s sqc: after output subst, cmd is: ./testsuite/../testsuite/i4-zerolength-seqs.sh . ./testsuite/.. esltmpaa3042.MINIFAM.HMM esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./testsuite/../testsuite/i4-zerolength-seqs.sh . ./testsuite/.. esltmpaa3042.MINIFAM.HMM esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 305 [ h50] ... sqc: evaluating line: 1 exercise h50 !testsuite/i5-hmmbuild-naming.pl! @@ !! %OUTFILES% 109s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i5-hmmbuild-naming.pl . ./testsuite/.. esltmpaa3042.OUTFILES 109s sqc: after output subst, cmd is: ./testsuite/../testsuite/i5-hmmbuild-naming.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./testsuite/../testsuite/i5-hmmbuild-naming.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 306 [ h82] ... sqc: evaluating line: 1 exercise h82 !testsuite/i16-build-allins.pl! @@ !! %OUTFILES% 109s sqc: after filename subst, cmd is: ./testsuite/../testsuite/i16-build-allins.pl . ./testsuite/.. esltmpaa3042.OUTFILES 109s sqc: after output subst, cmd is: ./testsuite/../testsuite/i16-build-allins.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./testsuite/../testsuite/i16-build-allins.pl . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s exercise 307 [ iss159] ... sqc: evaluating line: 1 exercise iss159 !testsuite/iss159-nhmmer-overlap.py! @@ !! %OUTFILES% 109s sqc: after filename subst, cmd is: ./testsuite/../testsuite/iss159-nhmmer-overlap.py . ./testsuite/.. esltmpaa3042.OUTFILES 109s sqc: after output subst, cmd is: ./testsuite/../testsuite/iss159-nhmmer-overlap.py . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./testsuite/../testsuite/iss159-nhmmer-overlap.py . ./testsuite/.. esltmpaa3042.OUTFILES > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s ok. 109s sqc: evaluating line: 1 prep minifam @src/hmmbuild@ %MINIFAM.HMM% !testsuite/minifam! 109s sqc: after filename subst, cmd is: ./src/hmmbuild esltmpaa3042.MINIFAM.HMM ./testsuite/../testsuite/minifam 109s sqc: after output subst, cmd is: ./src/hmmbuild esltmpaa3042.MINIFAM.HMM ./testsuite/../testsuite/minifam > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: ./src/hmmbuild esltmpaa3042.MINIFAM.HMM ./testsuite/../testsuite/minifam > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s sqc: evaluating line: 1 prep minifam rm -f %MINIFAM.HMM%.h3f %MINIFAM.HMM%.h3p %MINIFAM.HMM%.h3m %MINIFAM.HMM%.h3i 109s sqc: after filename subst, cmd is: rm -f esltmpaa3042.MINIFAM.HMM.h3f esltmpaa3042.MINIFAM.HMM.h3p esltmpaa3042.MINIFAM.HMM.h3m esltmpaa3042.MINIFAM.HMM.h3i 109s sqc: after output subst, cmd is: rm -f esltmpaa3042.MINIFAM.HMM.h3f esltmpaa3042.MINIFAM.HMM.h3p esltmpaa3042.MINIFAM.HMM.h3m esltmpaa3042.MINIFAM.HMM.h3i > /dev/null 2> esltmpaa3042.stderr 109s sqc: running cmd: rm -f esltmpaa3042.MINIFAM.HMM.h3f esltmpaa3042.MINIFAM.HMM.h3p esltmpaa3042.MINIFAM.HMM.h3m esltmpaa3042.MINIFAM.HMM.h3i > /dev/null 2> esltmpaa3042.stderr 109s sqc: return status 0 109s 109s 1 of 307 exercises at level <= 2 FAILED. 109s 109s 109s System information: 109s Mon Nov 17 16:57:25 UTC 2025 109s Linux autopkgtest 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 x86_64 GNU/Linux 109s 109s easel testsuite PASS 109s hmmer testsuite FAILED 109s autopkgtest [16:57:25]: test run-unit-test: -----------------------] 110s run-unit-test FAIL non-zero exit status 1 110s autopkgtest [16:57:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 110s autopkgtest [16:57:26]: test run-unit-test: - - - - - - - - - - stderr - - - - - - - - - - 110s Aborted (core dumped) 110s autopkgtest [16:57:26]: @@@@@@@@@@@@@@@@@@@@ summary 110s run-unit-test FAIL non-zero exit status 1