0s autopkgtest [00:14:41]: starting date and time: 2025-10-19 00:14:41+0000 0s autopkgtest [00:14:41]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:14:41]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.svd97hsc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade hhsuite --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-2.secgroup --name adt-resolute-amd64-hhsuite-20251019-001441-juju-7f2275-prod-proposed-migration-environment-15-37c653a6-f8c6-4314-ba43-8de1ae83967c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-hhsuite-20251019-001441-juju-7f2275-prod-proposed-migration-environment-15-37c653a6-f8c6-4314-ba43-8de1ae83967c from image adt/ubuntu-resolute-amd64-server-20251018.img (UUID 1e43d7d4-3f39-4b59-975d-5a285d0b86c1)... 62s autopkgtest [00:15:43]: testbed dpkg architecture: amd64 62s autopkgtest [00:15:43]: testbed apt version: 3.1.6ubuntu2 62s autopkgtest [00:15:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [00:15:43]: testbed release detected to be: None 63s autopkgtest [00:15:44]: updating testbed package index (apt update) 63s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 64s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.0 kB] 64s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [17.1 kB] 64s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [405 kB] 64s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 64s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [116 kB] 64s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [66.7 kB] 64s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 64s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 64s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [314 kB] 65s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [122 kB] 65s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B] 65s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.5 kB] 65s Fetched 1235 kB in 1s (874 kB/s) 65s Reading package lists... 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade... 67s The following packages will be upgraded: 67s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 67s libpython3-stdlib lto-disabled-list python3 python3-minimal 67s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 2763 kB of archives. 67s After this operation, 2048 B of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 68s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 68s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 68s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.8ubuntu1 [1140 kB] 68s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.8ubuntu1 [1438 kB] 68s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-1.0-1 amd64 1.86.0-6 [85.9 kB] 68s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-2.0 amd64 1.86.0-6 [25.3 kB] 68s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 lto-disabled-list all 71 [12.5 kB] 69s dpkg-preconfigure: unable to re-open stdin: No such file or directory 69s Fetched 2763 kB in 1s (2219 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 69s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 69s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 69s Setting up python3-minimal (3.13.7-2) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 69s Preparing to unpack .../0-python3_3.13.7-2_amd64.deb ... 69s running python pre-rtupdate hooks for python3.13... 69s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 69s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_amd64.deb ... 69s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 69s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_amd64.deb ... 69s Unpacking libapt-pkg7.0:amd64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 69s Preparing to unpack .../3-apt_3.1.8ubuntu1_amd64.deb ... 69s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 69s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_amd64.deb ... 69s Unpacking libgirepository-1.0-1:amd64 (1.86.0-6) over (1.84.0-1) ... 70s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_amd64.deb ... 70s Unpacking gir1.2-girepository-2.0:amd64 (1.86.0-6) over (1.84.0-1) ... 70s Preparing to unpack .../6-lto-disabled-list_71_all.deb ... 70s Unpacking lto-disabled-list (71) over (69) ... 70s Setting up lto-disabled-list (71) ... 70s Setting up libgirepository-1.0-1:amd64 (1.86.0-6) ... 70s Setting up libapt-pkg7.0:amd64 (3.1.8ubuntu1) ... 70s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 70s Setting up apt (3.1.8ubuntu1) ... 70s Setting up python3 (3.13.7-2) ... 70s running python rtupdate hooks for python3.13... 70s running python post-rtupdate hooks for python3.13... 70s Setting up gir1.2-girepository-2.0:amd64 (1.86.0-6) ... 70s Processing triggers for man-db (2.13.1-1) ... 71s Processing triggers for libc-bin (2.42-0ubuntu3) ... 71s autopkgtest [00:15:52]: upgrading testbed (apt dist-upgrade and autopurge) 72s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Solving dependencies... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [00:15:55]: rebooting testbed after setup commands that affected boot 94s autopkgtest [00:16:15]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 96s autopkgtest [00:16:17]: @@@@@@@@@@@@@@@@@@@@ apt-source hhsuite 99s Get:1 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (dsc) [2271 B] 99s Get:2 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (tar) [4775 kB] 99s Get:3 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (diff) [16.9 kB] 100s gpgv: Signature made Sun Aug 13 09:54:49 2023 UTC 100s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 100s gpgv: issuer "emollier@debian.org" 100s gpgv: Can't check signature: No public key 100s dpkg-source: warning: cannot verify inline signature for ./hhsuite_3.3.0+ds-8.dsc: no acceptable signature found 100s autopkgtest [00:16:21]: testing package hhsuite version 3.3.0+ds-8 100s autopkgtest [00:16:21]: build not needed 101s autopkgtest [00:16:22]: test run-unit-test: preparing testbed 101s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Solving dependencies... 102s The following NEW packages will be installed: 102s hhsuite hhsuite-data libgomp1 102s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 18.0 MB of archives. 102s After this operation, 482 MB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 102s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 hhsuite-data all 3.3.0+ds-8 [4475 kB] 103s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 hhsuite amd64 3.3.0+ds-8 [13.4 MB] 105s Fetched 18.0 MB in 3s (5855 kB/s) 105s Selecting previously unselected package libgomp1:amd64. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78439 files and directories currently installed.) 105s Preparing to unpack .../libgomp1_15.2.0-5ubuntu1_amd64.deb ... 105s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 105s Selecting previously unselected package hhsuite-data. 105s Preparing to unpack .../hhsuite-data_3.3.0+ds-8_all.deb ... 105s Unpacking hhsuite-data (3.3.0+ds-8) ... 105s Selecting previously unselected package hhsuite. 105s Preparing to unpack .../hhsuite_3.3.0+ds-8_amd64.deb ... 105s Unpacking hhsuite (3.3.0+ds-8) ... 107s Setting up hhsuite-data (3.3.0+ds-8) ... 107s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 107s Setting up hhsuite (3.3.0+ds-8) ... 107s Processing triggers for libc-bin (2.42-0ubuntu3) ... 107s Processing triggers for man-db (2.13.1-1) ... 108s autopkgtest [00:16:29]: test run-unit-test: [----------------------- 108s - 00:16:29.833 INFO: query.a3m is in A2M, A3M or FASTA format 108s 109s autopkgtest [00:16:30]: test run-unit-test: -----------------------] 109s run-unit-test PASS 109s autopkgtest [00:16:30]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 110s autopkgtest [00:16:31]: @@@@@@@@@@@@@@@@@@@@ summary 110s run-unit-test PASS