0s autopkgtest [03:04:43]: starting date and time: 2025-11-04 03:04:43+0000 0s autopkgtest [03:04:43]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:04:43]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hc6_jjre/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scipy --apt-upgrade harmonypy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scipy/1.16.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-4.secgroup --name adt-resolute-amd64-harmonypy-20251104-030443-juju-7f2275-prod-proposed-migration-environment-20-e3629cef-550f-4604-a47b-819480ebb22d --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-harmonypy-20251104-030443-juju-7f2275-prod-proposed-migration-environment-20-e3629cef-550f-4604-a47b-819480ebb22d from image adt/ubuntu-resolute-amd64-server-20251103.img (UUID 4cc36824-54ba-41ce-a81c-16211893e0c7)... 64s autopkgtest [03:05:47]: testbed dpkg architecture: amd64 64s autopkgtest [03:05:47]: testbed apt version: 3.1.11 65s autopkgtest [03:05:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [03:05:48]: testbed release detected to be: None 66s autopkgtest [03:05:49]: updating testbed package index (apt update) 66s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 66s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1057 kB] 67s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [24.0 kB] 67s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [83.5 kB] 67s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [136 kB] 67s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [93.1 kB] 67s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3116 B] 67s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 67s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 67s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 67s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [686 kB] 67s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [269 kB] 67s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [19.1 kB] 67s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [7536 B] 67s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [15.6 kB] 67s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [628 B] 68s Fetched 2561 kB in 1s (1841 kB/s) 69s Reading package lists... 70s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 70s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 70s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 70s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 71s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s 3cpio bash-completion diffutils iputils-tracepath libparted2t64 parted 71s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 887 kB of archives. 71s After this operation, 67.6 kB disk space will be freed. 71s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 diffutils amd64 1:3.12-1 [176 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 bash-completion all 1:2.16.0-8 [214 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 iputils-tracepath amd64 3:20250605-1ubuntu1 [14.8 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 parted amd64 3.6-6 [43.8 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libparted2t64 amd64 3.6-6 [152 kB] 72s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.11.0-2ubuntu2 [287 kB] 72s dpkg-preconfigure: unable to re-open stdin: No such file or directory 72s Fetched 887 kB in 1s (1164 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78551 files and directories currently installed.) 73s Preparing to unpack .../diffutils_1%3a3.12-1_amd64.deb ... 73s Unpacking diffutils (1:3.12-1) over (1:3.10-4) ... 73s Setting up diffutils (1:3.12-1) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78551 files and directories currently installed.) 73s Preparing to unpack .../bash-completion_1%3a2.16.0-8_all.deb ... 73s Unpacking bash-completion (1:2.16.0-8) over (1:2.16.0-7) ... 73s Preparing to unpack .../iputils-tracepath_3%3a20250605-1ubuntu1_amd64.deb ... 73s Unpacking iputils-tracepath (3:20250605-1ubuntu1) over (3:20240905-3ubuntu3) ... 73s Preparing to unpack .../parted_3.6-6_amd64.deb ... 73s Unpacking parted (3.6-6) over (3.6-5) ... 73s Preparing to unpack .../libparted2t64_3.6-6_amd64.deb ... 73s Unpacking libparted2t64:amd64 (3.6-6) over (3.6-5) ... 73s Preparing to unpack .../3cpio_0.11.0-2ubuntu2_amd64.deb ... 73s Unpacking 3cpio (0.11.0-2ubuntu2) over (0.10.2-0ubuntu1) ... 73s Setting up 3cpio (0.11.0-2ubuntu2) ... 73s Setting up libparted2t64:amd64 (3.6-6) ... 73s Setting up bash-completion (1:2.16.0-8) ... 73s Setting up iputils-tracepath (3:20250605-1ubuntu1) ... 73s Setting up parted (3.6-6) ... 73s Processing triggers for install-info (7.2-5) ... 73s Processing triggers for libc-bin (2.42-0ubuntu3) ... 73s Processing triggers for man-db (2.13.1-1) ... 74s autopkgtest [03:05:57]: upgrading testbed (apt dist-upgrade and autopurge) 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Solving dependencies... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s autopkgtest [03:06:01]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 79s autopkgtest [03:06:02]: @@@@@@@@@@@@@@@@@@@@ apt-source harmonypy 81s Get:1 http://ftpmaster.internal/ubuntu resolute/universe harmonypy 0.0.9-3.1 (dsc) [2236 B] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/universe harmonypy 0.0.9-3.1 (tar) [1964 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/universe harmonypy 0.0.9-3.1 (diff) [3028 B] 81s gpgv: Signature made Sun May 4 18:13:25 2025 UTC 81s gpgv: using RSA key 73B299CBD4EEADDCC017E87A5BFFDCC258E69433 81s gpgv: Can't check signature: No public key 81s dpkg-source: warning: cannot verify inline signature for ./harmonypy_0.0.9-3.1.dsc: no acceptable signature found 81s autopkgtest [03:06:04]: testing package harmonypy version 0.0.9-3.1 81s autopkgtest [03:06:04]: build not needed 82s autopkgtest [03:06:05]: test command1: preparing testbed 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Solving dependencies... 83s The following NEW packages will be installed: 83s libblas3 libgfortran5 libgomp1 liblapack3 libqhull-r8.0 python3-all 83s python3-dateutil python3-decorator python3-harmonypy python3-joblib 83s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 83s python3-pytz python3-scipy python3-sklearn python3-sklearn-lib 83s python3-threadpoolctl 83s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 46.3 MB of archives. 83s After this operation, 256 MB of additional disk space will be used. 83s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 84s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 84s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 85s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 85s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-7 [197 kB] 85s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.7-1 [884 B] 85s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 85s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 85s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 85s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-1ubuntu1 [7668 kB] 86s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 86s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-scipy amd64 1.16.3-1 [18.8 MB] 91s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.4.2-4 [205 kB] 91s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 91s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [4359 kB] 93s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 93s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-harmonypy all 0.0.9-3.1 [9858 B] 94s Fetched 46.3 MB in 11s (4285 kB/s) 94s Selecting previously unselected package python3-numpy-dev:amd64. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78551 files and directories currently installed.) 94s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 94s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 94s Selecting previously unselected package libblas3:amd64. 94s Preparing to unpack .../01-libblas3_3.12.1-6build1_amd64.deb ... 94s Unpacking libblas3:amd64 (3.12.1-6build1) ... 94s Selecting previously unselected package libgfortran5:amd64. 94s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 94s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 94s Selecting previously unselected package liblapack3:amd64. 94s Preparing to unpack .../03-liblapack3_3.12.1-6build1_amd64.deb ... 94s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 94s Selecting previously unselected package python3-numpy. 94s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 94s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 94s Selecting previously unselected package libgomp1:amd64. 94s Preparing to unpack .../05-libgomp1_15.2.0-7ubuntu1_amd64.deb ... 94s Unpacking libgomp1:amd64 (15.2.0-7ubuntu1) ... 94s Selecting previously unselected package libqhull-r8.0:amd64. 94s Preparing to unpack .../06-libqhull-r8.0_2020.2-7_amd64.deb ... 94s Unpacking libqhull-r8.0:amd64 (2020.2-7) ... 94s Selecting previously unselected package python3-all. 94s Preparing to unpack .../07-python3-all_3.13.7-1_amd64.deb ... 94s Unpacking python3-all (3.13.7-1) ... 94s Selecting previously unselected package python3-dateutil. 94s Preparing to unpack .../08-python3-dateutil_2.9.0-4_all.deb ... 94s Unpacking python3-dateutil (2.9.0-4) ... 94s Selecting previously unselected package python3-decorator. 94s Preparing to unpack .../09-python3-decorator_5.2.1-2_all.deb ... 94s Unpacking python3-decorator (5.2.1-2) ... 94s Selecting previously unselected package python3-pytz. 94s Preparing to unpack .../10-python3-pytz_2025.2-4_all.deb ... 94s Unpacking python3-pytz (2025.2-4) ... 94s Selecting previously unselected package python3-pandas-lib:amd64. 94s Preparing to unpack .../11-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_amd64.deb ... 94s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-1ubuntu1) ... 94s Selecting previously unselected package python3-pandas. 94s Preparing to unpack .../12-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 94s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 95s Selecting previously unselected package python3-scipy. 95s Preparing to unpack .../13-python3-scipy_1.16.3-1_amd64.deb ... 95s Unpacking python3-scipy (1.16.3-1) ... 95s Selecting previously unselected package python3-joblib. 95s Preparing to unpack .../14-python3-joblib_1.4.2-4_all.deb ... 95s Unpacking python3-joblib (1.4.2-4) ... 95s Selecting previously unselected package python3-threadpoolctl. 95s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 95s Unpacking python3-threadpoolctl (3.1.0-1) ... 95s Selecting previously unselected package python3-sklearn-lib:amd64. 95s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-8_amd64.deb ... 95s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ... 95s Selecting previously unselected package python3-sklearn. 95s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-8_all.deb ... 95s Unpacking python3-sklearn (1.4.2+dfsg-8) ... 95s Selecting previously unselected package python3-harmonypy. 95s Preparing to unpack .../18-python3-harmonypy_0.0.9-3.1_all.deb ... 95s Unpacking python3-harmonypy (0.0.9-3.1) ... 95s Setting up python3-joblib (1.4.2-4) ... 95s Setting up python3-threadpoolctl (3.1.0-1) ... 96s Setting up libqhull-r8.0:amd64 (2020.2-7) ... 96s Setting up python3-all (3.13.7-1) ... 96s Setting up python3-pytz (2025.2-4) ... 96s Setting up libgomp1:amd64 (15.2.0-7ubuntu1) ... 96s Setting up python3-decorator (5.2.1-2) ... 96s Setting up libblas3:amd64 (3.12.1-6build1) ... 96s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 96s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 96s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 96s Setting up python3-dateutil (2.9.0-4) ... 96s Setting up liblapack3:amd64 (3.12.1-6build1) ... 96s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 96s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 97s Setting up python3-scipy (1.16.3-1) ... 101s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-1ubuntu1) ... 101s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ... 101s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 105s Setting up python3-sklearn (1.4.2+dfsg-8) ... 106s Setting up python3-harmonypy (0.0.9-3.1) ... 107s Processing triggers for man-db (2.13.1-1) ... 107s Processing triggers for libc-bin (2.42-0ubuntu3) ... 108s autopkgtest [03:06:31]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import harmonypy; print(harmonypy)" ; done 108s autopkgtest [03:06:31]: test command1: [----------------------- 108s Testing with python3.13: 109s 109s autopkgtest [03:06:32]: test command1: -----------------------] 110s autopkgtest [03:06:33]: test command1: - - - - - - - - - - results - - - - - - - - - - 110s command1 PASS (superficial) 110s autopkgtest [03:06:33]: @@@@@@@@@@@@@@@@@@@@ summary 110s command1 PASS (superficial)