0s autopkgtest [10:29:59]: starting date and time: 2025-11-17 10:29:59+0000 0s autopkgtest [10:29:59]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [10:29:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cck0k9lp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade h5sparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-3.secgroup --name adt-resolute-amd64-h5sparse-20251117-102959-juju-7f2275-prod-proposed-migration-environment-15-c8f90f7e-ec49-4003-8ea7-f81fd455b998 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-h5sparse-20251117-102959-juju-7f2275-prod-proposed-migration-environment-15-c8f90f7e-ec49-4003-8ea7-f81fd455b998 from image adt/ubuntu-resolute-amd64-server-20251117.img (UUID 47cb9b95-dcf3-40f8-972d-d06b1b09ded2)... 63s autopkgtest [10:31:02]: testbed dpkg architecture: amd64 64s autopkgtest [10:31:03]: testbed apt version: 3.1.11 64s autopkgtest [10:31:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s autopkgtest [10:31:03]: testbed release detected to be: None 65s autopkgtest [10:31:04]: updating testbed package index (apt update) 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 66s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [881 kB] 66s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.3 kB] 66s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 66s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [158 kB] 66s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [118 kB] 66s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3128 B] 66s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 66s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 66s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 66s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [282 kB] 66s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [614 kB] 66s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [22.2 kB] 66s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [6516 B] 66s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.4 kB] 66s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [680 B] 69s Fetched 2367 kB in 1s (1752 kB/s) 70s Reading package lists... 70s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 71s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 71s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 71s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 71s Reading package lists... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Calculating upgrade... 72s The following packages will be upgraded: 72s libpython3-stdlib python3 python3-minimal usbutils 72s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 146 kB of archives. 72s After this operation, 0 B of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 usbutils amd64 1:019-1 [83.9 kB] 73s dpkg-preconfigure: unable to re-open stdin: No such file or directory 73s Fetched 146 kB in 0s (322 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 73s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 73s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 73s Setting up python3-minimal (3.13.7-2) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 73s Preparing to unpack .../python3_3.13.7-2_amd64.deb ... 73s running python pre-rtupdate hooks for python3.13... 73s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 73s Preparing to unpack .../libpython3-stdlib_3.13.7-2_amd64.deb ... 73s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 73s Preparing to unpack .../usbutils_1%3a019-1_amd64.deb ... 73s Unpacking usbutils (1:019-1) over (1:018-2) ... 73s Setting up usbutils (1:019-1) ... 74s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 74s Setting up python3 (3.13.7-2) ... 74s running python rtupdate hooks for python3.13... 74s running python post-rtupdate hooks for python3.13... 74s Processing triggers for man-db (2.13.1-1) ... 75s autopkgtest [10:31:14]: upgrading testbed (apt dist-upgrade and autopurge) 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Solving dependencies... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s autopkgtest [10:31:18]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 79s autopkgtest [10:31:18]: @@@@@@@@@@@@@@@@@@@@ apt-source h5sparse 80s Get:1 http://ftpmaster.internal/ubuntu resolute/universe h5sparse 0.1.0-8 (dsc) [2174 B] 80s Get:2 http://ftpmaster.internal/ubuntu resolute/universe h5sparse 0.1.0-8 (tar) [10.5 kB] 80s Get:3 http://ftpmaster.internal/ubuntu resolute/universe h5sparse 0.1.0-8 (diff) [4420 B] 80s gpgv: Signature made Thu Jan 16 20:35:49 2025 UTC 80s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 80s gpgv: issuer "tchet@debian.org" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./h5sparse_0.1.0-8.dsc: no acceptable signature found 80s autopkgtest [10:31:19]: testing package h5sparse version 0.1.0-8 81s autopkgtest [10:31:20]: build not needed 81s autopkgtest [10:31:20]: test run-unit-test: preparing testbed 81s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Solving dependencies... 82s The following NEW packages will be installed: 82s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 82s libpython3.14-minimal libpython3.14-stdlib libsz2 python3-all 82s python3-decorator python3-h5py python3-h5py-serial python3-h5sparse 82s python3-iniconfig python3-numpy python3-numpy-dev python3-pluggy 82s python3-pytest python3-scipy python3.14 python3.14-minimal 82s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 82s Need to get 39.4 MB of archives. 82s After this operation, 192 MB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 82s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 83s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 83s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.0-4 [906 kB] 83s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.0-4 [2559 kB] 83s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 83s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 83s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-4 [1432 kB] 83s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [59.8 kB] 83s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 83s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.0-4 [2397 kB] 83s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.0-4 [805 kB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-all amd64 3.13.7-2 [890 B] 84s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 84s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.13.0-1ubuntu1 [1184 kB] 84s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 84s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 84s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5sparse all 0.1.0-8 [6866 B] 84s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-1 [6840 B] 84s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 84s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 8.3.5-2 [252 kB] 85s Fetched 39.4 MB in 2s (17.1 MB/s) 85s Selecting previously unselected package python3-numpy-dev:amd64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 85s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 85s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 85s Selecting previously unselected package libblas3:amd64. 85s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 85s Unpacking libblas3:amd64 (3.12.1-7) ... 85s Selecting previously unselected package libgfortran5:amd64. 85s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 85s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 85s Selecting previously unselected package liblapack3:amd64. 85s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 85s Unpacking liblapack3:amd64 (3.12.1-7) ... 85s Selecting previously unselected package python3-numpy. 85s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 85s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 85s Selecting previously unselected package libpython3.14-minimal:amd64. 85s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_amd64.deb ... 85s Unpacking libpython3.14-minimal:amd64 (3.14.0-4) ... 85s Selecting previously unselected package python3.14-minimal. 85s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_amd64.deb ... 85s Unpacking python3.14-minimal (3.14.0-4) ... 85s Selecting previously unselected package libaec0:amd64. 85s Preparing to unpack .../07-libaec0_1.1.4-2_amd64.deb ... 85s Unpacking libaec0:amd64 (1.1.4-2) ... 85s Selecting previously unselected package libsz2:amd64. 85s Preparing to unpack .../08-libsz2_1.1.4-2_amd64.deb ... 85s Unpacking libsz2:amd64 (1.1.4-2) ... 85s Selecting previously unselected package libhdf5-310:amd64. 85s Preparing to unpack .../09-libhdf5-310_1.14.5+repack-4_amd64.deb ... 85s Unpacking libhdf5-310:amd64 (1.14.5+repack-4) ... 85s Selecting previously unselected package libhdf5-hl-310:amd64. 85s Preparing to unpack .../10-libhdf5-hl-310_1.14.5+repack-4_amd64.deb ... 85s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 85s Selecting previously unselected package liblzf1:amd64. 85s Preparing to unpack .../11-liblzf1_3.6-4_amd64.deb ... 85s Unpacking liblzf1:amd64 (3.6-4) ... 85s Selecting previously unselected package libpython3.14-stdlib:amd64. 85s Preparing to unpack .../12-libpython3.14-stdlib_3.14.0-4_amd64.deb ... 85s Unpacking libpython3.14-stdlib:amd64 (3.14.0-4) ... 85s Selecting previously unselected package python3.14. 85s Preparing to unpack .../13-python3.14_3.14.0-4_amd64.deb ... 85s Unpacking python3.14 (3.14.0-4) ... 85s Selecting previously unselected package python3-all. 85s Preparing to unpack .../14-python3-all_3.13.7-2_amd64.deb ... 85s Unpacking python3-all (3.13.7-2) ... 85s Selecting previously unselected package python3-decorator. 85s Preparing to unpack .../15-python3-decorator_5.2.1-2_all.deb ... 85s Unpacking python3-decorator (5.2.1-2) ... 85s Selecting previously unselected package python3-h5py-serial. 85s Preparing to unpack .../16-python3-h5py-serial_3.13.0-1ubuntu1_amd64.deb ... 85s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 85s Selecting previously unselected package python3-h5py. 85s Preparing to unpack .../17-python3-h5py_3.13.0-1ubuntu1_all.deb ... 85s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 85s Selecting previously unselected package python3-scipy. 85s Preparing to unpack .../18-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 85s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 86s Selecting previously unselected package python3-h5sparse. 86s Preparing to unpack .../19-python3-h5sparse_0.1.0-8_all.deb ... 86s Unpacking python3-h5sparse (0.1.0-8) ... 86s Selecting previously unselected package python3-iniconfig. 86s Preparing to unpack .../20-python3-iniconfig_2.1.0-1_all.deb ... 86s Unpacking python3-iniconfig (2.1.0-1) ... 86s Selecting previously unselected package python3-pluggy. 86s Preparing to unpack .../21-python3-pluggy_1.6.0-1_all.deb ... 86s Unpacking python3-pluggy (1.6.0-1) ... 86s Selecting previously unselected package python3-pytest. 86s Preparing to unpack .../22-python3-pytest_8.3.5-2_all.deb ... 86s Unpacking python3-pytest (8.3.5-2) ... 86s Setting up python3-iniconfig (2.1.0-1) ... 86s Setting up libpython3.14-minimal:amd64 (3.14.0-4) ... 86s Setting up libaec0:amd64 (1.1.4-2) ... 86s Setting up python3-decorator (5.2.1-2) ... 86s Setting up libblas3:amd64 (3.12.1-7) ... 86s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 86s Setting up liblzf1:amd64 (3.6-4) ... 86s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 86s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 86s Setting up python3-pluggy (1.6.0-1) ... 86s Setting up python3.14-minimal (3.14.0-4) ... 87s Setting up libsz2:amd64 (1.1.4-2) ... 87s Setting up liblapack3:amd64 (3.12.1-7) ... 87s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 87s Setting up libpython3.14-stdlib:amd64 (3.14.0-4) ... 87s Setting up python3-pytest (8.3.5-2) ... 88s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 90s Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... 90s Setting up python3.14 (3.14.0-4) ... 91s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 91s Setting up python3-scipy (1.15.3-1ubuntu1) ... 95s /usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:921: SyntaxWarning: 'break' in a 'finally' block 95s break 97s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 97s Setting up python3-all (3.13.7-2) ... 97s Setting up python3-h5py (3.13.0-1ubuntu1) ... 97s Setting up python3-h5sparse (0.1.0-8) ... 97s Processing triggers for libc-bin (2.42-2ubuntu2) ... 97s Processing triggers for systemd (257.9-0ubuntu2) ... 98s Processing triggers for man-db (2.13.1-1) ... 99s autopkgtest [10:31:38]: test run-unit-test: [----------------------- 99s ============================= test session starts ============================== 99s platform linux -- Python 3.14.0, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.14 99s cachedir: .pytest_cache 99s rootdir: /tmp/autopkgtest.mrfChp/build.E1Y/src 99s plugins: typeguard-4.4.2 99s collecting ... collected 0 items / 1 error 99s 99s ==================================== ERRORS ==================================== 99s ______________________ ERROR collecting h5sparse/tests.py ______________________ 99s ImportError while importing test module '/tmp/autopkgtest.mrfChp/build.E1Y/src/h5sparse/tests.py'. 99s Hint: make sure your test modules/packages have valid Python names. 99s Traceback: 99s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in 99s from . import _debian_h5py_serial as _h5py 99s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in 99s from . import _errors 99s E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 99s 99s During handling of the above exception, another exception occurred: 99s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 99s return _bootstrap._gcd_import(name[level:], package, level) 99s h5sparse/__init__.py:2: in 99s from .h5sparse import Group, File, Dataset # noqa: F401 99s h5sparse/h5sparse.py:2: in 99s import h5py 99s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in 99s from . import _debian_h5py_mpi as _h5py 99s E ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 99s =============================== warnings summary =============================== 99s h5sparse/__init__.py:1 99s /tmp/autopkgtest.mrfChp/build.E1Y/src/h5sparse/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 99s import pkg_resources 99s 99s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 99s =========================== short test summary info ============================ 99s ERROR h5sparse/tests.py 99s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 99s ========================= 1 warning, 1 error in 0.24s ========================== 100s autopkgtest [10:31:39]: test run-unit-test: -----------------------] 100s autopkgtest [10:31:39]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 100s run-unit-test FAIL non-zero exit status 2 101s autopkgtest [10:31:40]: test autodep8-python3: preparing testbed 121s Creating nova instance adt-resolute-amd64-h5sparse-20251117-102959-juju-7f2275-prod-proposed-migration-environment-15-c8f90f7e-ec49-4003-8ea7-f81fd455b998 from image adt/ubuntu-resolute-amd64-server-20251117.img (UUID 47cb9b95-dcf3-40f8-972d-d06b1b09ded2)... 175s autopkgtest [10:32:54]: testbed dpkg architecture: amd64 175s autopkgtest [10:32:54]: testbed apt version: 3.1.11 175s autopkgtest [10:32:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 176s autopkgtest [10:32:55]: testbed release detected to be: resolute 176s autopkgtest [10:32:55]: updating testbed package index (apt update) 177s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 177s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 177s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 177s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 177s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 177s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [881 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 177s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.3 kB] 177s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [158 kB] 177s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [118 kB] 177s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3128 B] 177s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 177s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 177s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 177s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [614 kB] 177s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [282 kB] 177s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [22.2 kB] 177s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [6516 B] 177s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.4 kB] 177s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [680 B] 180s Fetched 2367 kB in 1s (2156 kB/s) 181s Reading package lists... 182s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 182s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 182s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 182s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 183s Reading package lists... 183s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s Calculating upgrade... 183s The following packages will be upgraded: 183s libpython3-stdlib python3 python3-minimal usbutils 183s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 146 kB of archives. 183s After this operation, 0 B of additional disk space will be used. 183s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 184s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 184s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 184s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 usbutils amd64 1:019-1 [83.9 kB] 184s dpkg-preconfigure: unable to re-open stdin: No such file or directory 184s Fetched 146 kB in 0s (350 kB/s) 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 184s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 184s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 184s Setting up python3-minimal (3.13.7-2) ... 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 184s Preparing to unpack .../python3_3.13.7-2_amd64.deb ... 184s running python pre-rtupdate hooks for python3.13... 184s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 184s Preparing to unpack .../libpython3-stdlib_3.13.7-2_amd64.deb ... 184s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 184s Preparing to unpack .../usbutils_1%3a019-1_amd64.deb ... 184s Unpacking usbutils (1:019-1) over (1:018-2) ... 185s Setting up usbutils (1:019-1) ... 185s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 185s Setting up python3 (3.13.7-2) ... 185s running python rtupdate hooks for python3.13... 185s running python post-rtupdate hooks for python3.13... 185s Processing triggers for man-db (2.13.1-1) ... 186s autopkgtest [10:33:05]: upgrading testbed (apt dist-upgrade and autopurge) 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 186s Calculating upgrade... 186s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Solving dependencies... 187s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Solving dependencies... 190s The following NEW packages will be installed: 190s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 190s libpython3.14-minimal libpython3.14-stdlib libsz2 python3-all 190s python3-decorator python3-h5py python3-h5py-serial python3-h5sparse 190s python3-numpy python3-numpy-dev python3-scipy python3.14 python3.14-minimal 190s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 39.1 MB of archives. 190s After this operation, 190 MB of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 191s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 191s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 191s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 191s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 191s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.0-4 [906 kB] 191s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.0-4 [2559 kB] 191s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 191s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 191s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-4 [1432 kB] 191s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [59.8 kB] 191s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 191s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.0-4 [2397 kB] 192s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.0-4 [805 kB] 192s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-all amd64 3.13.7-2 [890 B] 192s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 192s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.13.0-1ubuntu1 [1184 kB] 192s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 192s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 192s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5sparse all 0.1.0-8 [6866 B] 192s Fetched 39.1 MB in 2s (18.8 MB/s) 192s Selecting previously unselected package python3-numpy-dev:amd64. 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 192s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 192s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 192s Selecting previously unselected package libblas3:amd64. 192s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 193s Unpacking libblas3:amd64 (3.12.1-7) ... 193s Selecting previously unselected package libgfortran5:amd64. 193s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 193s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 193s Selecting previously unselected package liblapack3:amd64. 193s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 193s Unpacking liblapack3:amd64 (3.12.1-7) ... 193s Selecting previously unselected package python3-numpy. 193s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 193s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 193s Selecting previously unselected package libpython3.14-minimal:amd64. 193s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_amd64.deb ... 193s Unpacking libpython3.14-minimal:amd64 (3.14.0-4) ... 193s Selecting previously unselected package python3.14-minimal. 193s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_amd64.deb ... 193s Unpacking python3.14-minimal (3.14.0-4) ... 193s Selecting previously unselected package libaec0:amd64. 193s Preparing to unpack .../07-libaec0_1.1.4-2_amd64.deb ... 193s Unpacking libaec0:amd64 (1.1.4-2) ... 193s Selecting previously unselected package libsz2:amd64. 193s Preparing to unpack .../08-libsz2_1.1.4-2_amd64.deb ... 193s Unpacking libsz2:amd64 (1.1.4-2) ... 193s Selecting previously unselected package libhdf5-310:amd64. 193s Preparing to unpack .../09-libhdf5-310_1.14.5+repack-4_amd64.deb ... 193s Unpacking libhdf5-310:amd64 (1.14.5+repack-4) ... 193s Selecting previously unselected package libhdf5-hl-310:amd64. 193s Preparing to unpack .../10-libhdf5-hl-310_1.14.5+repack-4_amd64.deb ... 193s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 193s Selecting previously unselected package liblzf1:amd64. 193s Preparing to unpack .../11-liblzf1_3.6-4_amd64.deb ... 193s Unpacking liblzf1:amd64 (3.6-4) ... 193s Selecting previously unselected package libpython3.14-stdlib:amd64. 193s Preparing to unpack .../12-libpython3.14-stdlib_3.14.0-4_amd64.deb ... 193s Unpacking libpython3.14-stdlib:amd64 (3.14.0-4) ... 193s Selecting previously unselected package python3.14. 193s Preparing to unpack .../13-python3.14_3.14.0-4_amd64.deb ... 193s Unpacking python3.14 (3.14.0-4) ... 193s Selecting previously unselected package python3-all. 193s Preparing to unpack .../14-python3-all_3.13.7-2_amd64.deb ... 193s Unpacking python3-all (3.13.7-2) ... 193s Selecting previously unselected package python3-decorator. 193s Preparing to unpack .../15-python3-decorator_5.2.1-2_all.deb ... 193s Unpacking python3-decorator (5.2.1-2) ... 193s Selecting previously unselected package python3-h5py-serial. 193s Preparing to unpack .../16-python3-h5py-serial_3.13.0-1ubuntu1_amd64.deb ... 193s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 193s Selecting previously unselected package python3-h5py. 193s Preparing to unpack .../17-python3-h5py_3.13.0-1ubuntu1_all.deb ... 193s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 193s Selecting previously unselected package python3-scipy. 193s Preparing to unpack .../18-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 193s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 194s Selecting previously unselected package python3-h5sparse. 194s Preparing to unpack .../19-python3-h5sparse_0.1.0-8_all.deb ... 194s Unpacking python3-h5sparse (0.1.0-8) ... 194s Setting up libpython3.14-minimal:amd64 (3.14.0-4) ... 194s Setting up libaec0:amd64 (1.1.4-2) ... 194s Setting up python3-decorator (5.2.1-2) ... 194s Setting up libblas3:amd64 (3.12.1-7) ... 194s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 194s Setting up liblzf1:amd64 (3.6-4) ... 194s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 194s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 194s Setting up python3.14-minimal (3.14.0-4) ... 195s Setting up libsz2:amd64 (1.1.4-2) ... 195s Setting up liblapack3:amd64 (3.12.1-7) ... 195s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 195s Setting up libpython3.14-stdlib:amd64 (3.14.0-4) ... 195s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 198s Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... 198s Setting up python3.14 (3.14.0-4) ... 199s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 199s Setting up python3-scipy (1.15.3-1ubuntu1) ... 202s /usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:921: SyntaxWarning: 'break' in a 'finally' block 202s break 204s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 205s Setting up python3-all (3.13.7-2) ... 205s Setting up python3-h5py (3.13.0-1ubuntu1) ... 205s Setting up python3-h5sparse (0.1.0-8) ... 205s Processing triggers for libc-bin (2.42-2ubuntu2) ... 205s Processing triggers for systemd (257.9-0ubuntu2) ... 205s Processing triggers for man-db (2.13.1-1) ... 207s autopkgtest [10:33:26]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import h5sparse; print(h5sparse)" ; done 207s autopkgtest [10:33:26]: test autodep8-python3: [----------------------- 207s Testing with python3.14: 208s Traceback (most recent call last): 208s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 208s from . import _debian_h5py_serial as _h5py 208s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 208s from . import _errors 208s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 208s 208s During handling of the above exception, another exception occurred: 208s 208s Traceback (most recent call last): 208s File "", line 1, in 208s import h5sparse; print(h5sparse) 208s ^^^^^^^^^^^^^^^ 208s File "/usr/lib/python3/dist-packages/h5sparse/__init__.py", line 2, in 208s from .h5sparse import Group, File, Dataset # noqa: F401 208s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 208s File "/usr/lib/python3/dist-packages/h5sparse/h5sparse.py", line 2, in 208s import h5py 208s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 208s from . import _debian_h5py_mpi as _h5py 208s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 208s autopkgtest [10:33:27]: test autodep8-python3: -----------------------] 208s autopkgtest [10:33:27]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 208s autodep8-python3 FAIL non-zero exit status 1 209s autopkgtest [10:33:28]: @@@@@@@@@@@@@@@@@@@@ summary 209s run-unit-test FAIL non-zero exit status 2 209s autodep8-python3 FAIL non-zero exit status 1