0s autopkgtest [23:05:10]: starting date and time: 2025-12-03 23:05:10+0000 0s autopkgtest [23:05:10]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:05:10]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2wubea0v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade gemmi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-1.secgroup --name adt-resolute-amd64-gemmi-20251203-230509-juju-7f2275-prod-proposed-migration-environment-15-39fe8b81-3e22-459c-a22a-187ca931bac2 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-gemmi-20251203-230509-juju-7f2275-prod-proposed-migration-environment-15-39fe8b81-3e22-459c-a22a-187ca931bac2 from image adt/ubuntu-resolute-amd64-server-20251203.img (UUID c6e78f39-c16c-48bb-9815-0096f6be052e)... 44s autopkgtest [23:05:54]: testbed dpkg architecture: amd64 44s autopkgtest [23:05:54]: testbed apt version: 3.1.12 44s autopkgtest [23:05:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s autopkgtest [23:05:55]: testbed release detected to be: None 45s autopkgtest [23:05:55]: updating testbed package index (apt update) 45s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 45s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 45s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 45s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 46s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.1 kB] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [931 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [155 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [163 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [220 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6432 B] 46s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 46s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [757 kB] 46s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [345 kB] 46s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.6 kB] 46s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4040 B] 46s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [9636 B] 46s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [748 B] 47s Fetched 2762 kB in 1s (3304 kB/s) 47s Reading package lists... 48s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 48s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 48s Reading package lists... 48s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 49s The following packages will be upgraded: 49s libpython3-stdlib python3 python3-gdbm python3-minimal 49s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 72.9 kB of archives. 49s After this operation, 2048 B of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.9-2 [28.1 kB] 49s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.9-2 [23.0 kB] 49s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.9-2 [10.8 kB] 49s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.13.9-2 [11.0 kB] 49s dpkg-preconfigure: unable to re-open stdin: No such file or directory 49s Fetched 72.9 kB in 0s (5071 kB/s) 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 49s Preparing to unpack .../python3-minimal_3.13.9-2_amd64.deb ... 49s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 49s Setting up python3-minimal (3.13.9-2) ... 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 49s Preparing to unpack .../python3_3.13.9-2_amd64.deb ... 49s running python pre-rtupdate hooks for python3.13... 49s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 49s Preparing to unpack .../libpython3-stdlib_3.13.9-2_amd64.deb ... 49s Unpacking libpython3-stdlib:amd64 (3.13.9-2) over (3.13.7-1) ... 49s Preparing to unpack .../python3-gdbm_3.13.9-2_amd64.deb ... 49s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 49s Setting up python3-gdbm (3.13.9-2) ... 49s Setting up libpython3-stdlib:amd64 (3.13.9-2) ... 49s Setting up python3 (3.13.9-2) ... 49s running python rtupdate hooks for python3.13... 49s running python post-rtupdate hooks for python3.13... 49s Processing triggers for man-db (2.13.1-1) ... 50s autopkgtest [23:06:00]: upgrading testbed (apt dist-upgrade and autopurge) 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s Calculating upgrade... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Solving dependencies... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s autopkgtest [23:06:03]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 13:34:17 UTC 2025 53s autopkgtest [23:06:03]: @@@@@@@@@@@@@@@@@@@@ apt-source gemmi 55s Get:1 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.7.1+ds-2 (dsc) [2386 B] 55s Get:2 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.7.1+ds-2 (tar) [1372 kB] 55s Get:3 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.7.1+ds-2 (diff) [7544 B] 55s gpgv: Signature made Wed Oct 1 08:46:07 2025 UTC 55s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 55s gpgv: issuer "merkys@debian.org" 55s gpgv: Can't check signature: No public key 55s dpkg-source: warning: cannot verify inline signature for ./gemmi_0.7.1+ds-2.dsc: no acceptable signature found 55s autopkgtest [23:06:05]: testing package gemmi version 0.7.1+ds-2 56s autopkgtest [23:06:06]: build not needed 56s autopkgtest [23:06:06]: test command1: preparing testbed 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Solving dependencies... 57s The following NEW packages will be installed: 57s fontconfig-config fonts-urw-base35 gemmi gemmi-dev libblas3 libcairo2 57s libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 57s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 57s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 57s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 57s libxrender1 python3-biopython python3-cairo python3-charset-normalizer 57s python3-freetype python3-gemmi python3-iniconfig python3-numpy 57s python3-numpy-dev python3-pil python3-pluggy python3-pytest 57s python3-reportlab python3-rlpycairo sgml-base tao-pegtl-dev w3c-sgml-lib 57s x11-common xfonts-encodings xfonts-utils xml-core 57s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 33.5 MB of archives. 57s After this operation, 110 MB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 57s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-9ubuntu1 [939 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 57s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 57s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build2 [14.1 kB] 57s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 57s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 57s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 57s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 57s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 57s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 gemmi amd64 0.7.1+ds-2 [1238 kB] 57s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 tao-pegtl-dev all 3.2.7-1 [59.6 kB] 58s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 gemmi-dev amd64 0.7.1+ds-2 [1292 kB] 58s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 58s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 58s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 58s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 58s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 58s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-1build1 [611 kB] 58s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 58s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-9ubuntu1 [151 kB] 58s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 58s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 58s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 58s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 58s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 58s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 58s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 58s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 58s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 58s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 58s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 58s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 58s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 58s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 58s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.4-1 [175 kB] 58s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 58s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 58s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 58s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-2 [92.2 kB] 58s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-4 [9332 B] 58s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.5-1 [1148 kB] 58s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 58s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19 [20.3 kB] 58s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 58s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.86+dfsg-1 [1682 kB] 58s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-gemmi amd64 0.7.1+ds-2 [1978 kB] 58s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-1 [6840 B] 58s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 58s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 8.3.5-2 [252 kB] 58s Fetched 33.5 MB in 1s (27.0 MB/s) 58s Selecting previously unselected package python3-numpy-dev:amd64. 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 58s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 58s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 58s Selecting previously unselected package libblas3:amd64. 58s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 58s Unpacking libblas3:amd64 (3.12.1-7) ... 58s Selecting previously unselected package libgfortran5:amd64. 58s Preparing to unpack .../02-libgfortran5_15.2.0-9ubuntu1_amd64.deb ... 58s Unpacking libgfortran5:amd64 (15.2.0-9ubuntu1) ... 58s Selecting previously unselected package liblapack3:amd64. 58s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 58s Unpacking liblapack3:amd64 (3.12.1-7) ... 58s Selecting previously unselected package python3-numpy. 58s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 58s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 58s Selecting previously unselected package libfontenc1:amd64. 58s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build2_amd64.deb ... 58s Unpacking libfontenc1:amd64 (1:1.1.8-1build2) ... 58s Selecting previously unselected package x11-common. 58s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 58s Unpacking x11-common (1:7.7+24ubuntu1) ... 58s Selecting previously unselected package xfonts-encodings. 58s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 58s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 58s Selecting previously unselected package xfonts-utils. 58s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_amd64.deb ... 58s Unpacking xfonts-utils (1:7.7+7) ... 58s Selecting previously unselected package fonts-urw-base35. 58s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 58s Unpacking fonts-urw-base35 (20200910-8) ... 58s Selecting previously unselected package fontconfig-config. 58s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 58s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 58s Selecting previously unselected package gemmi. 58s Preparing to unpack .../11-gemmi_0.7.1+ds-2_amd64.deb ... 58s Unpacking gemmi (0.7.1+ds-2) ... 59s Selecting previously unselected package tao-pegtl-dev. 59s Preparing to unpack .../12-tao-pegtl-dev_3.2.7-1_all.deb ... 59s Unpacking tao-pegtl-dev (3.2.7-1) ... 59s Selecting previously unselected package gemmi-dev. 59s Preparing to unpack .../13-gemmi-dev_0.7.1+ds-2_amd64.deb ... 59s Unpacking gemmi-dev (0.7.1+ds-2) ... 59s Selecting previously unselected package libfontconfig1:amd64. 59s Preparing to unpack .../14-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 59s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 59s Selecting previously unselected package libpixman-1-0:amd64. 59s Preparing to unpack .../15-libpixman-1-0_0.46.4-1_amd64.deb ... 59s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 59s Selecting previously unselected package libxcb-render0:amd64. 59s Preparing to unpack .../16-libxcb-render0_1.17.0-2build1_amd64.deb ... 59s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 59s Selecting previously unselected package libxcb-shm0:amd64. 59s Preparing to unpack .../17-libxcb-shm0_1.17.0-2build1_amd64.deb ... 59s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 59s Selecting previously unselected package libxrender1:amd64. 59s Preparing to unpack .../18-libxrender1_1%3a0.9.12-1_amd64.deb ... 59s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 59s Selecting previously unselected package libcairo2:amd64. 59s Preparing to unpack .../19-libcairo2_1.18.4-1build1_amd64.deb ... 59s Unpacking libcairo2:amd64 (1.18.4-1build1) ... 59s Selecting previously unselected package libdeflate0:amd64. 59s Preparing to unpack .../20-libdeflate0_1.23-2_amd64.deb ... 59s Unpacking libdeflate0:amd64 (1.23-2) ... 59s Selecting previously unselected package libgomp1:amd64. 59s Preparing to unpack .../21-libgomp1_15.2.0-9ubuntu1_amd64.deb ... 59s Unpacking libgomp1:amd64 (15.2.0-9ubuntu1) ... 59s Selecting previously unselected package libgraphite2-3:amd64. 59s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 59s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 59s Selecting previously unselected package libharfbuzz0b:amd64. 59s Preparing to unpack .../23-libharfbuzz0b_12.1.0-1_amd64.deb ... 59s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 59s Selecting previously unselected package libimagequant0:amd64. 59s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_amd64.deb ... 59s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 59s Selecting previously unselected package libjpeg-turbo8:amd64. 59s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 59s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 59s Selecting previously unselected package libjpeg8:amd64. 59s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_amd64.deb ... 59s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 59s Selecting previously unselected package liblcms2-2:amd64. 59s Preparing to unpack .../27-liblcms2-2_2.17-1_amd64.deb ... 59s Unpacking liblcms2-2:amd64 (2.17-1) ... 59s Selecting previously unselected package liblerc4:amd64. 59s Preparing to unpack .../28-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 59s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 59s Selecting previously unselected package libraqm0:amd64. 59s Preparing to unpack .../29-libraqm0_0.10.3-1_amd64.deb ... 59s Unpacking libraqm0:amd64 (0.10.3-1) ... 59s Selecting previously unselected package libsharpyuv0:amd64. 59s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_amd64.deb ... 59s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 59s Selecting previously unselected package libjbig0:amd64. 59s Preparing to unpack .../31-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 59s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 59s Selecting previously unselected package libwebp7:amd64. 59s Preparing to unpack .../32-libwebp7_1.5.0-0.1_amd64.deb ... 59s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 59s Selecting previously unselected package libtiff6:amd64. 59s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 59s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 59s Selecting previously unselected package libwebpdemux2:amd64. 59s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_amd64.deb ... 59s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 59s Selecting previously unselected package 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Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 59s Setting up python3-gemmi (0.7.1+ds-2) ... 59s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 59s Setting up libxrender1:amd64 (1:0.9.12-1) ... 59s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 59s Setting up python3-charset-normalizer (3.4.4-1) ... 59s Setting up x11-common (1:7.7+24ubuntu1) ... 60s Setting up libdeflate0:amd64 (1.23-2) ... 60s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 60s Setting up libgomp1:amd64 (15.2.0-9ubuntu1) ... 60s Setting up python3-freetype (2.5.1-2) ... 60s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 60s Setting up libfontenc1:amd64 (1:1.1.8-1build2) ... 60s Setting up libblas3:amd64 (3.12.1-7) ... 60s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 60s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 60s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 60s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 60s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 60s Setting up libgfortran5:amd64 (15.2.0-9ubuntu1) ... 60s Setting up python3-pluggy (1.6.0-1) ... 60s Setting up libwebp7:amd64 (1.5.0-0.1) ... 60s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 60s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 60s Setting up sgml-base (1.31+nmu1) ... 60s Setting up gemmi (0.7.1+ds-2) ... 60s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 60s Setting up tao-pegtl-dev (3.2.7-1) ... 60s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 60s Setting up liblapack3:amd64 (3.12.1-7) ... 60s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 60s Setting up python3-pytest (8.3.5-2) ... 60s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 60s Setting up gemmi-dev (0.7.1+ds-2) ... 60s Setting up xfonts-utils (1:7.7+7) ... 60s Setting up libraqm0:amd64 (0.10.3-1) ... 60s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 61s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 61s Setting up xml-core (0.19) ... 61s Setting up fonts-urw-base35 (20200910-8) ... 61s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 61s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 61s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 61s Setting up libcairo2:amd64 (1.18.4-1build1) ... 61s Setting up python3-cairo (1.27.0-2build1) ... 61s Setting up python3-rlpycairo (0.3.0-4) ... 62s Setting up python3-reportlab (4.4.5-1) ... 62s Processing triggers for libc-bin (2.42-2ubuntu2) ... 62s Processing triggers for man-db (2.13.1-1) ... 63s Processing triggers for sgml-base (1.31+nmu1) ... 63s Setting up w3c-sgml-lib (1.3-3) ... 78s Setting up python3-biopython (1.86+dfsg-1) ... 80s autopkgtest [23:06:30]: test command1: pytest-3 -k 'not test_sfcalc_ and not test_sfcalc4' 80s autopkgtest [23:06:30]: test command1: [----------------------- 80s ........................................................................ [ 36%] 81s ......................................................s................. [ 72%] 81s ...................................................... [100%] 81s =========================== short test summary info ============================ 81s SKIPPED [1] tests/test_monlib.py:118: $CLIBD_MON not defined. 81s 197 passed, 1 skipped, 3 deselected in 0.56s 81s autopkgtest [23:06:31]: test command1: -----------------------] 81s autopkgtest [23:06:31]: test command1: - - - - - - - - - - results - - - - - - - - - - 81s command1 PASS 82s autopkgtest [23:06:32]: @@@@@@@@@@@@@@@@@@@@ summary 82s command1 PASS