0s autopkgtest [11:52:43]: starting date and time: 2025-11-17 11:52:43+0000 0s autopkgtest [11:52:43]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:52:43]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m7rh5pl5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-4.secgroup --name adt-resolute-amd64-cyvcf2-20251117-115243-juju-7f2275-prod-proposed-migration-environment-15-b8a905cb-4edf-4e8f-aff8-00a14bf9a0dc --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-cyvcf2-20251117-115243-juju-7f2275-prod-proposed-migration-environment-15-b8a905cb-4edf-4e8f-aff8-00a14bf9a0dc from image adt/ubuntu-resolute-amd64-server-20251117.img (UUID 47cb9b95-dcf3-40f8-972d-d06b1b09ded2)... 65s autopkgtest [11:53:48]: testbed dpkg architecture: amd64 65s autopkgtest [11:53:48]: testbed apt version: 3.1.11 65s autopkgtest [11:53:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [11:53:48]: testbed release detected to be: None 66s autopkgtest [11:53:49]: updating testbed package index (apt update) 66s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 67s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 67s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 67s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 67s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 67s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 67s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [118 kB] 67s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [159 kB] 67s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3096 B] 67s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 67s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 67s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 67s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [279 kB] 67s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [607 kB] 67s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [21.2 kB] 67s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.4 kB] 67s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [6516 B] 67s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [680 B] 70s Fetched 2346 kB in 1s (1936 kB/s) 71s Reading package lists... 72s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 72s Reading package lists... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade... 73s The following packages will be upgraded: 73s libpython3-stdlib python3 python3-minimal usbutils 73s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Need to get 146 kB of archives. 73s After this operation, 0 B of additional disk space will be used. 73s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 73s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 73s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 73s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 usbutils amd64 1:019-1 [83.9 kB] 74s dpkg-preconfigure: unable to re-open stdin: No such file or directory 74s Fetched 146 kB in 0s (358 kB/s) 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 74s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 74s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 74s Setting up python3-minimal (3.13.7-2) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 74s Preparing to unpack .../python3_3.13.7-2_amd64.deb ... 74s running python pre-rtupdate hooks for python3.13... 74s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 74s Preparing to unpack .../libpython3-stdlib_3.13.7-2_amd64.deb ... 74s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 74s Preparing to unpack .../usbutils_1%3a019-1_amd64.deb ... 74s Unpacking usbutils (1:019-1) over (1:018-2) ... 74s Setting up usbutils (1:019-1) ... 74s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 74s Setting up python3 (3.13.7-2) ... 74s running python rtupdate hooks for python3.13... 74s running python post-rtupdate hooks for python3.13... 74s Processing triggers for man-db (2.13.1-1) ... 75s autopkgtest [11:53:58]: upgrading testbed (apt dist-upgrade and autopurge) 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Calculating upgrade... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Solving dependencies... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s autopkgtest [11:54:02]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 79s autopkgtest [11:54:02]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 81s Get:1 http://ftpmaster.internal/ubuntu resolute/universe cyvcf2 0.31.4-1 (dsc) [2498 B] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/universe cyvcf2 0.31.4-1 (tar) [421 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/universe cyvcf2 0.31.4-1 (diff) [6836 B] 81s gpgv: Signature made Mon Nov 3 21:31:49 2025 UTC 81s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 81s gpgv: issuer "emollier@debian.org" 81s gpgv: Can't check signature: No public key 81s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.4-1.dsc: no acceptable signature found 82s autopkgtest [11:54:05]: testing package cyvcf2 version 0.31.4-1 82s autopkgtest [11:54:05]: build not needed 83s autopkgtest [11:54:06]: test run-unit-test: preparing testbed 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Solving dependencies... 84s The following NEW packages will be installed: 84s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 84s libpython3.14-minimal libpython3.14-stdlib python3-all python3-click 84s python3-coloredlogs python3-cyvcf2 python3-humanfriendly python3-iniconfig 84s python3-numpy python3-numpy-dev python3-pluggy python3-pytest python3.14 84s python3.14-minimal 84s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 18.3 MB of archives. 84s After this operation, 75.3 MB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 84s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 84s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 85s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 85s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 86s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.0-4 [906 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.0-4 [2559 kB] 87s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 87s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 87s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 87s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.0-4 [2397 kB] 87s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.0-4 [805 kB] 87s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-all amd64 3.13.7-2 [890 B] 87s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 87s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 87s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 87s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cyvcf2 amd64 0.31.4-1 [1083 kB] 87s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-1 [6840 B] 87s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 87s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 8.3.5-2 [252 kB] 88s Fetched 18.3 MB in 4s (4980 kB/s) 88s Selecting previously unselected package python3-numpy-dev:amd64. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 88s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 88s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 88s Selecting previously unselected package libblas3:amd64. 88s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 88s Unpacking libblas3:amd64 (3.12.1-7) ... 88s Selecting previously unselected package libgfortran5:amd64. 88s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 88s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 88s Selecting previously unselected package liblapack3:amd64. 88s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 88s Unpacking liblapack3:amd64 (3.12.1-7) ... 88s Selecting previously unselected package python3-numpy. 88s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 88s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 88s Selecting previously unselected package libpython3.14-minimal:amd64. 88s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_amd64.deb ... 88s Unpacking libpython3.14-minimal:amd64 (3.14.0-4) ... 88s Selecting previously unselected package python3.14-minimal. 88s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_amd64.deb ... 88s Unpacking python3.14-minimal (3.14.0-4) ... 88s Selecting previously unselected package libdeflate0:amd64. 88s Preparing to unpack .../07-libdeflate0_1.23-2_amd64.deb ... 88s Unpacking libdeflate0:amd64 (1.23-2) ... 88s Selecting previously unselected package libhtscodecs2:amd64. 88s Preparing to unpack .../08-libhtscodecs2_1.6.1-2_amd64.deb ... 88s Unpacking libhtscodecs2:amd64 (1.6.1-2) ... 88s Selecting previously unselected package libhts3t64:amd64. 88s Preparing to unpack .../09-libhts3t64_1.22.1+ds2-1_amd64.deb ... 88s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 88s Selecting previously unselected package libpython3.14-stdlib:amd64. 88s Preparing to unpack .../10-libpython3.14-stdlib_3.14.0-4_amd64.deb ... 88s Unpacking libpython3.14-stdlib:amd64 (3.14.0-4) ... 88s Selecting previously unselected package python3.14. 88s Preparing to unpack .../11-python3.14_3.14.0-4_amd64.deb ... 88s Unpacking python3.14 (3.14.0-4) ... 88s Selecting previously unselected package python3-all. 88s Preparing to unpack .../12-python3-all_3.13.7-2_amd64.deb ... 88s Unpacking python3-all (3.13.7-2) ... 88s Selecting previously unselected package python3-click. 88s Preparing to unpack .../13-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 88s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 88s Selecting previously unselected package python3-humanfriendly. 88s Preparing to unpack .../14-python3-humanfriendly_10.0-6_all.deb ... 88s Unpacking python3-humanfriendly (10.0-6) ... 88s Selecting previously unselected package python3-coloredlogs. 88s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 88s Unpacking python3-coloredlogs (15.0.1-1) ... 88s Selecting previously unselected package python3-cyvcf2. 88s Preparing to unpack .../16-python3-cyvcf2_0.31.4-1_amd64.deb ... 88s Unpacking python3-cyvcf2 (0.31.4-1) ... 88s Selecting previously unselected package python3-iniconfig. 88s Preparing to unpack .../17-python3-iniconfig_2.1.0-1_all.deb ... 88s Unpacking python3-iniconfig (2.1.0-1) ... 88s Selecting previously unselected package python3-pluggy. 88s Preparing to unpack .../18-python3-pluggy_1.6.0-1_all.deb ... 88s Unpacking python3-pluggy (1.6.0-1) ... 88s Selecting previously unselected package python3-pytest. 88s Preparing to unpack .../19-python3-pytest_8.3.5-2_all.deb ... 88s Unpacking python3-pytest (8.3.5-2) ... 88s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 88s Setting up python3-iniconfig (2.1.0-1) ... 89s Setting up libpython3.14-minimal:amd64 (3.14.0-4) ... 89s Setting up libdeflate0:amd64 (1.23-2) ... 89s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 89s Setting up libblas3:amd64 (3.12.1-7) ... 89s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 89s Setting up python3-humanfriendly (10.0-6) ... 89s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 89s return super(MockedProgram, self).__exit__(*args, **kw) 89s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 89s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 89s Setting up python3-pluggy (1.6.0-1) ... 89s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 89s Setting up python3-coloredlogs (15.0.1-1) ... 89s Setting up python3.14-minimal (3.14.0-4) ... 90s Setting up liblapack3:amd64 (3.12.1-7) ... 90s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 90s Setting up libpython3.14-stdlib:amd64 (3.14.0-4) ... 90s Setting up python3-pytest (8.3.5-2) ... 91s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 94s Setting up python3.14 (3.14.0-4) ... 95s Setting up python3-all (3.13.7-2) ... 95s Setting up python3-cyvcf2 (0.31.4-1) ... 95s Processing triggers for systemd (257.9-0ubuntu2) ... 95s Processing triggers for man-db (2.13.1-1) ... 95s Processing triggers for libc-bin (2.42-2ubuntu2) ... 96s autopkgtest [11:54:19]: test run-unit-test: [----------------------- 97s Testing with python3.14 in /tmp/autopkgtest.6qoja1/autopkgtest_tmp: 97s ============================= test session starts ============================== 97s platform linux -- Python 3.14.0, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.14 97s cachedir: .pytest_cache 97s rootdir: /tmp/autopkgtest.6qoja1/autopkgtest_tmp 97s plugins: typeguard-4.4.2 97s collecting ... collected 0 items / 4 errors 97s 97s ==================================== ERRORS ==================================== 97s __________________ ERROR collecting cyvcf2/tests/test_cli.py ___________________ 97s ImportError while importing test module '/tmp/autopkgtest.6qoja1/autopkgtest_tmp/cyvcf2/tests/test_cli.py'. 97s Hint: make sure your test modules/packages have valid Python names. 97s Traceback: 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 97s from . import multiarray 97s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 97s from . import overrides 97s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 97s from numpy._core._multiarray_umath import ( 97s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 97s from numpy.__config__ import show_config 97s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 97s from numpy._core._multiarray_umath import ( 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 97s raise ImportError(msg) 97s E ImportError: 97s E 97s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s E 97s E Importing the numpy C-extensions failed. This error can happen for 97s E many reasons, often due to issues with your setup or how NumPy was 97s E installed. 97s E 97s E We have compiled some common reasons and troubleshooting tips at: 97s E 97s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s E 97s E Please note and check the following: 97s E 97s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 97s E * The NumPy version is: "2.2.4" 97s E 97s E and make sure that they are the versions you expect. 97s E Please carefully study the documentation linked above for further help. 97s E 97s E Original error was: No module named 'numpy._core._multiarray_umath' 97s 97s The above exception was the direct cause of the following exception: 97s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 97s return _bootstrap._gcd_import(name[level:], package, level) 97s cyvcf2/__init__.py:1: in 97s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 97s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 97s #cython: profile=False 97s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 97s raise ImportError(msg) from e 97s E ImportError: Error importing numpy: you should not try to import numpy from 97s E its source directory; please exit the numpy source tree, and relaunch 97s E your python interpreter from there. 97s __________________ ERROR collecting cyvcf2/tests/test_hemi.py __________________ 97s ImportError while importing test module '/tmp/autopkgtest.6qoja1/autopkgtest_tmp/cyvcf2/tests/test_hemi.py'. 97s Hint: make sure your test modules/packages have valid Python names. 97s Traceback: 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 97s from . import multiarray 97s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 97s from . import overrides 97s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 97s from numpy._core._multiarray_umath import ( 97s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 97s from numpy.__config__ import show_config 97s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 97s from numpy._core._multiarray_umath import ( 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 97s raise ImportError(msg) 97s E ImportError: 97s E 97s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s E 97s E Importing the numpy C-extensions failed. This error can happen for 97s E many reasons, often due to issues with your setup or how NumPy was 97s E installed. 97s E 97s E We have compiled some common reasons and troubleshooting tips at: 97s E 97s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s E 97s E Please note and check the following: 97s E 97s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 97s E * The NumPy version is: "2.2.4" 97s E 97s E and make sure that they are the versions you expect. 97s E Please carefully study the documentation linked above for further help. 97s E 97s E Original error was: No module named 'numpy._core._multiarray_umath' 97s 97s The above exception was the direct cause of the following exception: 97s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 97s return _bootstrap._gcd_import(name[level:], package, level) 97s cyvcf2/__init__.py:1: in 97s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 97s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 97s #cython: profile=False 97s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 97s raise ImportError(msg) from e 97s E ImportError: Error importing numpy: you should not try to import numpy from 97s E its source directory; please exit the numpy source tree, and relaunch 97s E your python interpreter from there. 97s _________________ ERROR collecting cyvcf2/tests/test_reader.py _________________ 97s ImportError while importing test module '/tmp/autopkgtest.6qoja1/autopkgtest_tmp/cyvcf2/tests/test_reader.py'. 97s Hint: make sure your test modules/packages have valid Python names. 97s Traceback: 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 97s from . import multiarray 97s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 97s from . import overrides 97s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 97s from numpy._core._multiarray_umath import ( 97s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 97s from numpy.__config__ import show_config 97s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 97s from numpy._core._multiarray_umath import ( 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 97s raise ImportError(msg) 97s E ImportError: 97s E 97s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s E 97s E Importing the numpy C-extensions failed. This error can happen for 97s E many reasons, often due to issues with your setup or how NumPy was 97s E installed. 97s E 97s E We have compiled some common reasons and troubleshooting tips at: 97s E 97s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s E 97s E Please note and check the following: 97s E 97s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 97s E * The NumPy version is: "2.2.4" 97s E 97s E and make sure that they are the versions you expect. 97s E Please carefully study the documentation linked above for further help. 97s E 97s E Original error was: No module named 'numpy._core._multiarray_umath' 97s 97s The above exception was the direct cause of the following exception: 97s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 97s return _bootstrap._gcd_import(name[level:], package, level) 97s cyvcf2/__init__.py:1: in 97s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 97s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 97s #cython: profile=False 97s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 97s raise ImportError(msg) from e 97s E ImportError: Error importing numpy: you should not try to import numpy from 97s E its source directory; please exit the numpy source tree, and relaunch 97s E your python interpreter from there. 97s _________________ ERROR collecting cyvcf2/tests/test_writer.py _________________ 97s ImportError while importing test module '/tmp/autopkgtest.6qoja1/autopkgtest_tmp/cyvcf2/tests/test_writer.py'. 97s Hint: make sure your test modules/packages have valid Python names. 97s Traceback: 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 97s from . import multiarray 97s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 97s from . import overrides 97s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 97s from numpy._core._multiarray_umath import ( 97s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 97s from numpy.__config__ import show_config 97s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 97s from numpy._core._multiarray_umath import ( 97s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 97s raise ImportError(msg) 97s E ImportError: 97s E 97s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s E 97s E Importing the numpy C-extensions failed. This error can happen for 97s E many reasons, often due to issues with your setup or how NumPy was 97s E installed. 97s E 97s E We have compiled some common reasons and troubleshooting tips at: 97s E 97s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s E 97s E Please note and check the following: 97s E 97s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 97s E * The NumPy version is: "2.2.4" 97s E 97s E and make sure that they are the versions you expect. 97s E Please carefully study the documentation linked above for further help. 97s E 97s E Original error was: No module named 'numpy._core._multiarray_umath' 97s 97s The above exception was the direct cause of the following exception: 97s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 97s return _bootstrap._gcd_import(name[level:], package, level) 97s cyvcf2/__init__.py:1: in 97s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 97s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 97s #cython: profile=False 97s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 97s raise ImportError(msg) from e 97s E ImportError: Error importing numpy: you should not try to import numpy from 97s E its source directory; please exit the numpy source tree, and relaunch 97s E your python interpreter from there. 97s =========================== short test summary info ============================ 97s ERROR cyvcf2/tests/test_cli.py 97s ERROR cyvcf2/tests/test_hemi.py 97s ERROR cyvcf2/tests/test_reader.py 97s ERROR cyvcf2/tests/test_writer.py 97s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!! 97s ============================== 4 errors in 0.18s =============================== 98s autopkgtest [11:54:21]: test run-unit-test: -----------------------] 98s autopkgtest [11:54:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 98s run-unit-test FAIL non-zero exit status 2 98s autopkgtest [11:54:21]: test autodep8-python3: preparing testbed 120s Creating nova instance adt-resolute-amd64-cyvcf2-20251117-115243-juju-7f2275-prod-proposed-migration-environment-15-b8a905cb-4edf-4e8f-aff8-00a14bf9a0dc from image adt/ubuntu-resolute-amd64-server-20251117.img (UUID 47cb9b95-dcf3-40f8-972d-d06b1b09ded2)... 174s autopkgtest [11:55:37]: testbed dpkg architecture: amd64 174s autopkgtest [11:55:37]: testbed apt version: 3.1.11 175s autopkgtest [11:55:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 175s autopkgtest [11:55:38]: testbed release detected to be: resolute 176s autopkgtest [11:55:39]: updating testbed package index (apt update) 176s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 176s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 176s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 176s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 176s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 177s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 177s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 177s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [118 kB] 177s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [159 kB] 177s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3096 B] 177s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 177s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 177s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 177s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [607 kB] 177s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [279 kB] 177s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [21.2 kB] 177s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [6516 B] 177s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [13.4 kB] 177s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [680 B] 179s Fetched 2346 kB in 1s (1761 kB/s) 180s Reading package lists... 181s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 181s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 181s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 181s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 182s Reading package lists... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Calculating upgrade... 182s The following packages will be upgraded: 182s libpython3-stdlib python3 python3-minimal usbutils 182s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Need to get 146 kB of archives. 182s After this operation, 0 B of additional disk space will be used. 182s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.7-2 [27.8 kB] 182s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.7-2 [23.9 kB] 182s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.7-2 [10.6 kB] 182s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 usbutils amd64 1:019-1 [83.9 kB] 183s dpkg-preconfigure: unable to re-open stdin: No such file or directory 183s Fetched 146 kB in 0s (358 kB/s) 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 183s Preparing to unpack .../python3-minimal_3.13.7-2_amd64.deb ... 183s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 183s Setting up python3-minimal (3.13.7-2) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 183s Preparing to unpack .../python3_3.13.7-2_amd64.deb ... 183s running python pre-rtupdate hooks for python3.13... 183s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 183s Preparing to unpack .../libpython3-stdlib_3.13.7-2_amd64.deb ... 183s Unpacking libpython3-stdlib:amd64 (3.13.7-2) over (3.13.7-1) ... 183s Preparing to unpack .../usbutils_1%3a019-1_amd64.deb ... 183s Unpacking usbutils (1:019-1) over (1:018-2) ... 183s Setting up usbutils (1:019-1) ... 183s Setting up libpython3-stdlib:amd64 (3.13.7-2) ... 183s Setting up python3 (3.13.7-2) ... 183s running python rtupdate hooks for python3.13... 183s running python post-rtupdate hooks for python3.13... 183s Processing triggers for man-db (2.13.1-1) ... 184s autopkgtest [11:55:47]: upgrading testbed (apt dist-upgrade and autopurge) 184s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Calculating upgrade... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Solving dependencies... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 188s Solving dependencies... 188s The following NEW packages will be installed: 188s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 188s libpython3.14-minimal libpython3.14-stdlib python3-all python3-click 188s python3-coloredlogs python3-cyvcf2 python3-humanfriendly python3-numpy 188s python3-numpy-dev python3.14 python3.14-minimal 189s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 18.0 MB of archives. 189s After this operation, 73.9 MB of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 189s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 189s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 189s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 189s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 190s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.0-4 [906 kB] 190s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.0-4 [2559 kB] 190s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 190s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 190s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 190s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.0-4 [2397 kB] 190s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.0-4 [805 kB] 190s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-all amd64 3.13.7-2 [890 B] 190s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 190s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 190s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 190s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cyvcf2 amd64 0.31.4-1 [1083 kB] 190s Fetched 18.0 MB in 2s (10.1 MB/s) 190s Selecting previously unselected package python3-numpy-dev:amd64. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 190s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 190s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 190s Selecting previously unselected package libblas3:amd64. 190s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 190s Unpacking libblas3:amd64 (3.12.1-7) ... 190s Selecting previously unselected package libgfortran5:amd64. 190s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 190s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 191s Selecting previously unselected package liblapack3:amd64. 191s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 191s Unpacking liblapack3:amd64 (3.12.1-7) ... 191s Selecting previously unselected package python3-numpy. 191s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 191s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 191s Selecting previously unselected package libpython3.14-minimal:amd64. 191s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_amd64.deb ... 191s Unpacking libpython3.14-minimal:amd64 (3.14.0-4) ... 191s Selecting previously unselected package python3.14-minimal. 191s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_amd64.deb ... 191s Unpacking python3.14-minimal (3.14.0-4) ... 191s Selecting previously unselected package libdeflate0:amd64. 191s Preparing to unpack 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Selecting previously unselected package python3-click. 191s Preparing to unpack .../13-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 191s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 191s Selecting previously unselected package python3-humanfriendly. 191s Preparing to unpack .../14-python3-humanfriendly_10.0-6_all.deb ... 191s Unpacking python3-humanfriendly (10.0-6) ... 191s Selecting previously unselected package python3-coloredlogs. 191s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 191s Unpacking python3-coloredlogs (15.0.1-1) ... 191s Selecting previously unselected package python3-cyvcf2. 191s Preparing to unpack .../16-python3-cyvcf2_0.31.4-1_amd64.deb ... 191s Unpacking python3-cyvcf2 (0.31.4-1) ... 191s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 191s Setting up libpython3.14-minimal:amd64 (3.14.0-4) ... 191s Setting up libdeflate0:amd64 (1.23-2) ... 191s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 191s Setting up libblas3:amd64 (3.12.1-7) ... 191s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 191s Setting up python3-humanfriendly (10.0-6) ... 191s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 191s return super(MockedProgram, self).__exit__(*args, **kw) 191s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 191s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 191s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 191s Setting up python3-coloredlogs (15.0.1-1) ... 192s Setting up python3.14-minimal (3.14.0-4) ... 192s Setting up liblapack3:amd64 (3.12.1-7) ... 192s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 192s Setting up libpython3.14-stdlib:amd64 (3.14.0-4) ... 192s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 195s Setting up python3.14 (3.14.0-4) ... 196s Setting up python3-all (3.13.7-2) ... 196s Setting up python3-cyvcf2 (0.31.4-1) ... 196s Processing triggers for systemd (257.9-0ubuntu2) ... 196s Processing triggers for man-db (2.13.1-1) ... 197s Processing triggers for libc-bin (2.42-2ubuntu2) ... 199s autopkgtest [11:56:02]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 199s autopkgtest [11:56:02]: test autodep8-python3: [----------------------- 199s Testing with python3.14: 199s Traceback (most recent call last): 199s File "/usr/lib/python3/dist-packages/numpy/_core/__init__.py", line 23, in 199s from . import multiarray 199s File "/usr/lib/python3/dist-packages/numpy/_core/multiarray.py", line 10, in 199s from . import overrides 199s File "/usr/lib/python3/dist-packages/numpy/_core/overrides.py", line 7, in 199s from numpy._core._multiarray_umath import ( 199s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 199s ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 199s 199s During handling of the above exception, another exception occurred: 199s 199s Traceback (most recent call last): 199s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 114, in 199s from numpy.__config__ import show_config 199s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 199s from numpy._core._multiarray_umath import ( 199s ...<3 lines>... 199s ) 199s File "/usr/lib/python3/dist-packages/numpy/_core/__init__.py", line 49, in 199s raise ImportError(msg) 199s ImportError: 199s 199s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 199s 199s Importing the numpy C-extensions failed. This error can happen for 199s many reasons, often due to issues with your setup or how NumPy was 199s installed. 199s 199s We have compiled some common reasons and troubleshooting tips at: 199s 199s https://numpy.org/devdocs/user/troubleshooting-importerror.html 199s 199s Please note and check the following: 199s 199s * The Python version is: Python3.14 from "/usr/bin/python3.14" 199s * The NumPy version is: "2.2.4" 199s 199s and make sure that they are the versions you expect. 199s Please carefully study the documentation linked above for further help. 199s 199s Original error was: No module named 'numpy._core._multiarray_umath' 199s 199s 199s The above exception was the direct cause of the following exception: 199s 199s Traceback (most recent call last): 199s File "", line 1, in 199s import cyvcf2; print(cyvcf2) 199s ^^^^^^^^^^^^^ 199s File "/usr/lib/python3/dist-packages/cyvcf2/__init__.py", line 1, in 199s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 199s par_het) 199s File "cyvcf2/cyvcf2.pyx", line 1, in init cyvcf2.cyvcf2 199s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 119, in 199s raise ImportError(msg) from e 199s ImportError: Error importing numpy: you should not try to import numpy from 199s its source directory; please exit the numpy source tree, and relaunch 199s your python interpreter from there. 199s autopkgtest [11:56:02]: test autodep8-python3: -----------------------] 200s autodep8-python3 FAIL non-zero exit status 1 200s autopkgtest [11:56:03]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 200s autopkgtest [11:56:03]: @@@@@@@@@@@@@@@@@@@@ summary 200s run-unit-test FAIL non-zero exit status 2 200s autodep8-python3 FAIL non-zero exit status 1