0s autopkgtest [08:50:16]: starting date and time: 2026-02-05 08:50:16+0000 0s autopkgtest [08:50:16]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [08:50:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._pfdyyl5/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pymatgen,src:sphinx-rtd-theme --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pymatgen/2025.10.7+dfsg1-1ubuntu1 sphinx-rtd-theme/3.1.0+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-15.secgroup --name adt-resolute-amd64-custodian-20260205-085015-juju-7f2275-prod-proposed-migration-environment-2-fbf9ba94-8996-4129-a58b-3f5851f4ad4c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-amd64-custodian-20260205-085015-juju-7f2275-prod-proposed-migration-environment-2-fbf9ba94-8996-4129-a58b-3f5851f4ad4c from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 103s autopkgtest [08:51:59]: testbed dpkg architecture: amd64 103s autopkgtest [08:51:59]: testbed apt version: 3.1.14 104s autopkgtest [08:52:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s autopkgtest [08:52:00]: testbed release detected to be: None 105s autopkgtest [08:52:01]: updating testbed package index (apt update) 105s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 105s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 105s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 107s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 107s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 107s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 108s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [276 kB] 108s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [206 kB] 108s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [7252 B] 108s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 108s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [32.9 kB] 108s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 108s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1566 kB] 109s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [604 kB] 110s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [42.6 kB] 110s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4824 B] 110s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [30.1 kB] 110s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1116 B] 111s Fetched 4888 kB in 5s (889 kB/s) 111s Reading package lists... 112s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 113s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s The following packages will be upgraded: 113s pollinate python3-linkify-it python3-referencing sed 113s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 251 kB of archives. 113s After this operation, 4096 B disk space will be freed. 113s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 113s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 113s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 113s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 113s dpkg-preconfigure: unable to re-open stdin: No such file or directory 113s Fetched 251 kB in 0s (0 B/s) 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 113s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 113s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 113s Setting up sed (4.9-2build3) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 113s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 114s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 114s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 114s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 114s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 114s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 114s Setting up pollinate (4.33-4ubuntu5) ... 124s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 124s Setting up python3-referencing (0.36.2-1ubuntu2) ... 124s Processing triggers for install-info (7.2-5) ... 124s Processing triggers for man-db (2.13.1-1) ... 125s autopkgtest [08:52:21]: upgrading testbed (apt dist-upgrade and autopurge) 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Calculating upgrade... 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Solving dependencies... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [08:52:22]: rebooting testbed after setup commands that affected boot 168s autopkgtest [08:53:04]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 177s autopkgtest [08:53:13]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 185s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 185s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 185s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 185s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 185s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 185s gpgv: Can't check signature: No public key 185s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 187s autopkgtest [08:53:23]: testing package custodian version 2024.10.16-1 187s autopkgtest [08:53:23]: build not needed 234s autopkgtest [08:54:10]: test test-custodian: preparing testbed 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 234s Solving dependencies... 235s The following NEW packages will be installed: 235s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 235s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 235s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 235s liblcms2-2 liblerc4 libopenjp2-7 libpython3.14-minimal libpython3.14-stdlib 235s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 235s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 235s libzopfli1 python-matplotlib-data python3-all python3-annotated-types 235s python3-bibtexparser python3-brotli python3-bson python3-contourpy 235s python3-custodian python3-cycler python3-decorator python3-dnspython 235s python3-email-validator python3-fastjsonschema python3-fonttools 235s python3-iniconfig python3-joblib python3-jupyter-core python3-kiwisolver 235s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpmath 235s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 235s python3-orjson python3-palettable python3-pandas python3-pandas-lib 235s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 235s python3-pluggy python3-psutil python3-pydantic python3-pydantic-core 235s python3-pymatgen python3-pytest python3-pytz python3-ruamel.yaml 235s python3-ruamel.yaml.clib python3-scipy python3-sentry-sdk python3-spglib 235s python3-sympy python3-tabulate python3-tenacity python3-tk python3-tqdm 235s python3-traitlets python3-typing-inspection python3-ufolib2 235s python3-uncertainties python3-zopfli python3.13-tk python3.14 235s python3.14-minimal python3.14-tk unicode-data x11-common 235s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 235s Need to get 117 MB of archives. 235s After this operation, 616 MB of additional disk space will be used. 235s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 235s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 235s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 235s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 235s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 235s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 235s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 236s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 236s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 236s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 236s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 236s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 236s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 236s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 236s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 236s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 236s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 236s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 236s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 236s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 236s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 236s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 236s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 236s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 236s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 236s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsymspg2 amd64 2.7.0-1 [209 kB] 236s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 236s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 236s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 236s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 236s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 236s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 236s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 236s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 236s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 236s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 236s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 236s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 236s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3build1 [114 kB] 236s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 236s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 236s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.9-3 [890 B] 236s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 237s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-bibtexparser all 2.0.0b5+really1.4.3-1build1 [34.8 kB] 237s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 237s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-bson all 4.16.0-1 [44.8 kB] 237s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 237s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 237s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 237s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 237s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pydantic-core amd64 2.41.5-2 [2427 kB] 237s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-typing-inspection all 0.4.2-1 [13.1 kB] 237s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dnspython all 2.7.0-1ubuntu2 [167 kB] 237s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 237s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pydantic amd64 2.12.5-2 [312 kB] 237s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-7 [93.3 kB] 237s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ruamel.yaml.clib amd64 0.2.15+ds-1 [200 kB] 237s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 237s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-monty all 2025.3.3-1 [40.4 kB] 237s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-psutil amd64 7.1.0-1ubuntu1 [191 kB] 237s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 237s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 237s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 237s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 237s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-3 [11.2 kB] 237s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 237s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 237s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 237s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 237s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 238s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-4 [19.0 MB] 238s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 238s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 239s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 239s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 239s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 239s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 239s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 239s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 239s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sentry-sdk all 2.22.0-1 [199 kB] 239s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-custodian all 2024.10.16-1 [90.9 kB] 239s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 239s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 239s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.5.2-1 [210 kB] 239s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB] 239s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 239s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.9.1-1 [28.9 kB] 239s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.10.4-1 [39.2 kB] 239s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 239s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-orjson amd64 3.11.5-1 [266 kB] 239s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-palettable all 3.3.3-3 [72.6 kB] 239s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 240s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plotly all 5.20.0+dfsg-1.1 [2766 kB] 240s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 240s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spglib amd64 2.7.0-1 [188 kB] 240s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tabulate all 0.9.0-1build1 [45.4 kB] 240s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-uncertainties all 3.2.3-4 [51.8 kB] 240s Get:98 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pymatgen amd64 2025.10.7+dfsg1-1ubuntu1 [2676 kB] 240s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 240s Fetched 117 MB in 5s (22.5 MB/s) 240s Selecting previously unselected package python3-numpy-dev:amd64. 240s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 240s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 240s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 240s Selecting previously unselected package libblas3:amd64. 240s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_amd64.deb ... 240s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 240s Selecting previously unselected package libgfortran5:amd64. 240s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 240s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 240s Selecting previously unselected package liblapack3:amd64. 240s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 240s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 240s Selecting previously unselected package python3-numpy. 240s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 240s Unpacking python3-numpy (1:2.3.5+ds-3) ... 240s Selecting previously unselected package libpython3.14-minimal:amd64. 240s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_amd64.deb ... 240s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 240s Selecting previously unselected package python3.14-minimal. 240s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_amd64.deb ... 240s Unpacking python3.14-minimal (3.14.2-1) ... 240s Selecting previously unselected package fonts-dejavu-mono. 240s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8build1_all.deb ... 240s Unpacking fonts-dejavu-mono (2.37-8build1) ... 240s Selecting previously unselected package fonts-dejavu-core. 240s Preparing to unpack .../08-fonts-dejavu-core_2.37-8build1_all.deb ... 240s Unpacking fonts-dejavu-core (2.37-8build1) ... 240s Selecting previously unselected package fontconfig-config. 240s Preparing to unpack .../09-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 241s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 241s Selecting previously unselected package fonts-lyx. 241s Preparing to unpack .../10-fonts-lyx_2.5.0~RC2-3_all.deb ... 241s Unpacking fonts-lyx (2.5.0~RC2-3) ... 241s Selecting previously unselected package libdeflate0:amd64. 241s Preparing to unpack .../11-libdeflate0_1.23-2_amd64.deb ... 241s Unpacking libdeflate0:amd64 (1.23-2) ... 241s Selecting previously unselected package libfontconfig1:amd64. 241s Preparing to unpack .../12-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 241s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 241s Selecting previously unselected package libgomp1:amd64. 241s Preparing to unpack .../13-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 241s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 241s Selecting previously unselected package libgraphite2-3:amd64. 241s Preparing to unpack .../14-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 241s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 241s Selecting previously unselected package libharfbuzz0b:amd64. 241s Preparing to unpack .../15-libharfbuzz0b_12.3.2-1_amd64.deb ... 241s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 241s Selecting previously unselected package libimagequant0:amd64. 241s Preparing to unpack .../16-libimagequant0_2.18.0-1build1_amd64.deb ... 241s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 241s Selecting previously unselected package libjpeg-turbo8:amd64. 241s Preparing to unpack .../17-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 241s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 241s Selecting previously unselected package libjpeg8:amd64. 241s Preparing to unpack .../18-libjpeg8_8c-2ubuntu11_amd64.deb ... 241s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 241s Selecting previously unselected package liblcms2-2:amd64. 241s Preparing to unpack .../19-liblcms2-2_2.17-1_amd64.deb ... 241s Unpacking liblcms2-2:amd64 (2.17-1) ... 241s Selecting previously unselected package liblerc4:amd64. 241s Preparing to unpack .../20-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 241s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 241s Selecting previously unselected package libpython3.14-stdlib:amd64. 241s Preparing to unpack .../21-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 241s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 241s Selecting previously unselected package libqhull-r8.0:amd64. 241s Preparing to unpack .../22-libqhull-r8.0_2020.2-8_amd64.deb ... 241s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 241s Selecting previously unselected package libraqm0:amd64. 241s Preparing to unpack .../23-libraqm0_0.10.3-1_amd64.deb ... 241s Unpacking libraqm0:amd64 (0.10.3-1) ... 241s Selecting previously unselected package libsharpyuv0:amd64. 241s Preparing to unpack .../24-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 241s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 241s Selecting previously unselected package libsymspg2:amd64. 241s Preparing to unpack .../25-libsymspg2_2.7.0-1_amd64.deb ... 241s Unpacking libsymspg2:amd64 (2.7.0-1) ... 241s Selecting previously unselected package libtcl8.6:amd64. 241s Preparing to unpack .../26-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 241s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 241s Selecting previously unselected package libjbig0:amd64. 241s Preparing to unpack .../27-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 241s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 241s Selecting previously unselected package libwebp7:amd64. 241s Preparing to unpack .../28-libwebp7_1.5.0-0.1build1_amd64.deb ... 241s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 241s Selecting previously unselected package libtiff6:amd64. 241s Preparing to unpack .../29-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 241s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 241s Selecting previously unselected package libxrender1:amd64. 241s Preparing to unpack .../30-libxrender1_1%3a0.9.12-1_amd64.deb ... 241s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 241s Selecting previously unselected package libxft2:amd64. 241s Preparing to unpack .../31-libxft2_2.3.6-1build2_amd64.deb ... 241s Unpacking libxft2:amd64 (2.3.6-1build2) ... 241s Selecting previously unselected package x11-common. 241s Preparing to unpack .../32-x11-common_1%3a7.7+24ubuntu1_all.deb ... 241s Unpacking x11-common (1:7.7+24ubuntu1) ... 241s Selecting previously unselected package libxss1:amd64. 241s Preparing to unpack .../33-libxss1_1%3a1.2.3-1build4_amd64.deb ... 241s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 241s Selecting previously unselected package libtk8.6:amd64. 241s Preparing to unpack .../34-libtk8.6_8.6.17-1_amd64.deb ... 241s Unpacking libtk8.6:amd64 (8.6.17-1) ... 241s Selecting previously unselected package libwebpdemux2:amd64. 241s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1build1_amd64.deb ... 241s Unpacking libwebpdemux2:amd64 (1.5.0-0.1build1) ... 241s Selecting previously unselected package libwebpmux3:amd64. 241s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1build1_amd64.deb ... 241s Unpacking libwebpmux3:amd64 (1.5.0-0.1build1) ... 241s Selecting previously unselected package libxslt1.1:amd64. 241s Preparing to unpack .../37-libxslt1.1_1.1.43-0.3_amd64.deb ... 241s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 241s Selecting previously unselected package libzopfli1. 241s Preparing to unpack .../38-libzopfli1_1.0.3-3build1_amd64.deb ... 241s Unpacking libzopfli1 (1.0.3-3build1) ... 241s Selecting previously unselected package python-matplotlib-data. 241s Preparing to unpack .../39-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 241s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 241s Selecting previously unselected package python3.14. 241s Preparing to unpack .../40-python3.14_3.14.2-1_amd64.deb ... 241s Unpacking python3.14 (3.14.2-1) ... 241s Selecting previously unselected package python3-all. 241s Preparing to unpack .../41-python3-all_3.13.9-3_amd64.deb ... 241s Unpacking python3-all (3.13.9-3) ... 241s Selecting previously unselected package python3-annotated-types. 241s Preparing to unpack .../42-python3-annotated-types_0.7.0-1_all.deb ... 241s Unpacking python3-annotated-types (0.7.0-1) ... 241s Selecting previously unselected package python3-bibtexparser. 241s Preparing to unpack .../43-python3-bibtexparser_2.0.0b5+really1.4.3-1build1_all.deb ... 241s Unpacking python3-bibtexparser (2.0.0b5+really1.4.3-1build1) ... 241s Selecting previously unselected package python3-brotli. 241s Preparing to unpack .../44-python3-brotli_1.1.0-2build6_amd64.deb ... 241s Unpacking python3-brotli (1.1.0-2build6) ... 241s Selecting previously unselected package python3-bson. 241s Preparing to unpack .../45-python3-bson_4.16.0-1_all.deb ... 241s Unpacking python3-bson (4.16.0-1) ... 241s Selecting previously unselected package python3-contourpy. 241s Preparing to unpack .../46-python3-contourpy_1.3.3-1_amd64.deb ... 241s Unpacking python3-contourpy (1.3.3-1) ... 241s Selecting previously unselected package python3-pytz. 241s Preparing to unpack .../47-python3-pytz_2025.2-5_all.deb ... 241s Unpacking python3-pytz (2025.2-5) ... 241s Selecting previously unselected package python3-pandas-lib:amd64. 241s Preparing to unpack .../48-python3-pandas-lib_2.3.3+dfsg-3_amd64.deb ... 241s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 241s Selecting previously unselected package python3-pandas. 241s Preparing to unpack .../49-python3-pandas_2.3.3+dfsg-3_all.deb ... 241s Unpacking python3-pandas (2.3.3+dfsg-3) ... 241s Selecting previously unselected package python3-pydantic-core. 241s Preparing to unpack .../50-python3-pydantic-core_2.41.5-2_amd64.deb ... 241s Unpacking python3-pydantic-core (2.41.5-2) ... 241s Selecting previously unselected package python3-typing-inspection. 241s Preparing to unpack .../51-python3-typing-inspection_0.4.2-1_all.deb ... 241s Unpacking python3-typing-inspection (0.4.2-1) ... 241s Selecting previously unselected package python3-dnspython. 241s Preparing to unpack .../52-python3-dnspython_2.7.0-1ubuntu2_all.deb ... 241s Unpacking python3-dnspython (2.7.0-1ubuntu2) ... 241s Selecting previously unselected package python3-email-validator. 241s Preparing to unpack .../53-python3-email-validator_2.2.0-1_all.deb ... 241s Unpacking python3-email-validator (2.2.0-1) ... 241s Selecting previously unselected package python3-pydantic. 241s Preparing to unpack .../54-python3-pydantic_2.12.5-2_amd64.deb ... 241s Unpacking python3-pydantic (2.12.5-2) ... 241s Selecting previously unselected package python3-tqdm. 241s Preparing to unpack .../55-python3-tqdm_4.67.1-7_all.deb ... 241s Unpacking python3-tqdm (4.67.1-7) ... 241s Selecting previously unselected package python3-ruamel.yaml.clib. 241s Preparing to unpack .../56-python3-ruamel.yaml.clib_0.2.15+ds-1_amd64.deb ... 241s Unpacking python3-ruamel.yaml.clib (0.2.15+ds-1) ... 241s Selecting previously unselected package python3-ruamel.yaml. 241s Preparing to unpack .../57-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 241s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 241s Selecting previously unselected package python3-monty. 241s Preparing to unpack .../58-python3-monty_2025.3.3-1_all.deb ... 241s Unpacking python3-monty (2025.3.3-1) ... 241s Selecting previously unselected package python3-psutil. 241s Preparing to unpack .../59-python3-psutil_7.1.0-1ubuntu1_amd64.deb ... 241s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 242s Selecting previously unselected package libopenjp2-7:amd64. 242s Preparing to unpack .../60-libopenjp2-7_2.5.4-1_amd64.deb ... 242s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 242s Selecting previously unselected package python3-pil:amd64. 242s Preparing to unpack .../61-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 242s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 242s Selecting previously unselected package python3.13-tk. 242s Preparing to unpack .../62-python3.13-tk_3.13.11-1_amd64.deb ... 242s Unpacking python3.13-tk (3.13.11-1) ... 242s Selecting previously unselected package python3.14-tk. 242s Preparing to unpack .../63-python3.14-tk_3.14.2-1_amd64.deb ... 242s Unpacking python3.14-tk (3.14.2-1) ... 242s Selecting previously unselected package python3-tk. 242s Preparing to unpack .../64-python3-tk_3.13.9-3_amd64.deb ... 242s Unpacking python3-tk (3.13.9-3) ... 242s Selecting previously unselected package python3-pil.imagetk:amd64. 242s Preparing to unpack .../65-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 242s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 242s Selecting previously unselected package python3-cycler. 242s Preparing to unpack .../66-python3-cycler_0.12.1-2_all.deb ... 242s Unpacking python3-cycler (0.12.1-2) ... 242s Selecting previously unselected package python3-lxml:amd64. 242s Preparing to unpack .../67-python3-lxml_6.0.2-1_amd64.deb ... 242s Unpacking python3-lxml:amd64 (6.0.2-1) ... 242s Selecting previously unselected package python3-lz4. 242s Preparing to unpack .../68-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 242s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 242s Selecting previously unselected package python3-decorator. 242s Preparing to unpack .../69-python3-decorator_5.2.1-2_all.deb ... 242s Unpacking python3-decorator (5.2.1-2) ... 242s Selecting previously unselected package python3-scipy. 242s Preparing to unpack .../70-python3-scipy_1.16.3-4_amd64.deb ... 242s Unpacking python3-scipy (1.16.3-4) ... 242s Selecting previously unselected package python3-mpmath. 242s Preparing to unpack .../71-python3-mpmath_1.3.0-2_all.deb ... 242s Unpacking python3-mpmath (1.3.0-2) ... 242s Selecting previously unselected package python3-sympy. 242s Preparing to unpack .../72-python3-sympy_1.14.0-2_all.deb ... 242s Unpacking python3-sympy (1.14.0-2) ... 242s Selecting previously unselected package python3-ufolib2. 242s Preparing to unpack .../73-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 242s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 242s Selecting previously unselected package python3-zopfli. 242s Preparing to unpack .../74-python3-zopfli_0.4.0-1_amd64.deb ... 242s Unpacking python3-zopfli (0.4.0-1) ... 242s Selecting previously unselected package unicode-data. 242s Preparing to unpack .../75-unicode-data_16.0.0-1build1_all.deb ... 242s Unpacking unicode-data (16.0.0-1build1) ... 242s Selecting previously unselected package python3-fonttools. 242s Preparing to unpack .../76-python3-fonttools_4.61.1-3_amd64.deb ... 242s Unpacking python3-fonttools (4.61.1-3) ... 242s Selecting previously unselected package python3-kiwisolver. 242s Preparing to unpack .../77-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 242s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 242s Selecting previously unselected package python3-matplotlib. 242s Preparing to unpack .../78-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 242s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 242s Selecting previously unselected package python3-sentry-sdk. 242s Preparing to unpack .../79-python3-sentry-sdk_2.22.0-1_all.deb ... 242s Unpacking python3-sentry-sdk (2.22.0-1) ... 242s Selecting previously unselected package python3-custodian. 242s Preparing to unpack .../80-python3-custodian_2024.10.16-1_all.deb ... 242s Unpacking python3-custodian (2024.10.16-1) ... 242s Selecting previously unselected package python3-fastjsonschema. 242s Preparing to unpack .../81-python3-fastjsonschema_2.21.1-1_all.deb ... 242s Unpacking python3-fastjsonschema (2.21.1-1) ... 242s Selecting previously unselected package python3-iniconfig. 242s Preparing to unpack .../82-python3-iniconfig_2.1.0-2_all.deb ... 242s Unpacking python3-iniconfig (2.1.0-2) ... 242s Selecting previously unselected package python3-joblib. 242s Preparing to unpack .../83-python3-joblib_1.5.2-1_all.deb ... 242s Unpacking python3-joblib (1.5.2-1) ... 242s Selecting previously unselected package python3-platformdirs. 242s Preparing to unpack .../84-python3-platformdirs_4.5.1-1_all.deb ... 242s Unpacking python3-platformdirs (4.5.1-1) ... 242s Selecting previously unselected package python3-traitlets. 242s Preparing to unpack .../85-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 242s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 243s Selecting previously unselected package python3-jupyter-core. 243s Preparing to unpack .../86-python3-jupyter-core_5.9.1-1_all.deb ... 243s Unpacking python3-jupyter-core (5.9.1-1) ... 243s Selecting previously unselected package python3-nbformat. 243s Preparing to unpack .../87-python3-nbformat_5.10.4-1_all.deb ... 243s Unpacking python3-nbformat (5.10.4-1) ... 243s Selecting previously unselected package python3-networkx. 243s Preparing to unpack .../88-python3-networkx_3.2.1-4ubuntu2_all.deb ... 243s Unpacking python3-networkx (3.2.1-4ubuntu2) ... 243s Selecting previously unselected package python3-orjson. 243s Preparing to unpack .../89-python3-orjson_3.11.5-1_amd64.deb ... 243s Unpacking python3-orjson (3.11.5-1) ... 243s Selecting previously unselected package python3-palettable. 243s Preparing to unpack .../90-python3-palettable_3.3.3-3_all.deb ... 243s Unpacking python3-palettable (3.3.3-3) ... 243s Selecting previously unselected package python3-tenacity. 243s Preparing to unpack .../91-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 243s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 243s Selecting previously unselected package python3-plotly. 243s Preparing to unpack .../92-python3-plotly_5.20.0+dfsg-1.1_all.deb ... 243s Unpacking python3-plotly (5.20.0+dfsg-1.1) ... 243s Selecting previously unselected package python3-pluggy. 243s Preparing to unpack .../93-python3-pluggy_1.6.0-2_all.deb ... 243s Unpacking python3-pluggy (1.6.0-2) ... 243s Selecting previously unselected package python3-spglib. 243s Preparing to unpack .../94-python3-spglib_2.7.0-1_amd64.deb ... 243s Unpacking python3-spglib (2.7.0-1) ... 243s Selecting previously unselected package python3-tabulate. 243s Preparing to unpack .../95-python3-tabulate_0.9.0-1build1_all.deb ... 243s Unpacking python3-tabulate (0.9.0-1build1) ... 243s Selecting previously unselected package python3-uncertainties. 243s Preparing to unpack .../96-python3-uncertainties_3.2.3-4_all.deb ... 243s Unpacking python3-uncertainties (3.2.3-4) ... 243s Selecting previously unselected package python3-pymatgen. 243s Preparing to unpack .../97-python3-pymatgen_2025.10.7+dfsg1-1ubuntu1_amd64.deb ... 243s Unpacking python3-pymatgen (2025.10.7+dfsg1-1ubuntu1) ... 243s Selecting previously unselected package python3-pytest. 243s Preparing to unpack .../98-python3-pytest_9.0.2-2_all.deb ... 243s Unpacking python3-pytest (9.0.2-2) ... 243s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 247s Setting up liblcms2-2:amd64 (2.17-1) ... 247s Setting up python3-iniconfig (2.1.0-2) ... 247s Setting up python3-orjson (3.11.5-1) ... 247s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 247s Setting up python3-pydantic-core (2.41.5-2) ... 247s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 247s Setting up python3-typing-inspection (0.4.2-1) ... 247s Setting up libxrender1:amd64 (1:0.9.12-1) ... 247s Setting up python3-joblib (1.5.2-1) ... 247s Setting up python3-lz4 (4.4.5+dfsg-1) ... 247s Setting up fonts-lyx (2.5.0~RC2-3) ... 247s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 247s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 247s Setting up python3-tqdm (4.67.1-7) ... 247s Setting up 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man-db (2.13.1-1) ... 296s autopkgtest [08:55:12]: test test-custodian: [----------------------- 297s ============================= test session starts ============================== 297s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 297s cachedir: .pytest_cache 297s rootdir: /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests 297s plugins: typeguard-4.4.4 299s collecting ... collected 162 items / 3 skipped 299s 299s tests/ansible/test_interpreter.py::TestModder::test_dict_modify PASSED [ 0%] 299s tests/ansible/test_interpreter.py::TestModder::test_file_modify PASSED [ 1%] 299s tests/ansible/test_interpreter.py::TestModder::test_strict_mode PASSED [ 1%] 299s tests/ansible/test_interpreter.py::TestModder::test_modify_object PASSED [ 2%] 300s tests/cp2k/test_handlers.py::HandlerTests::test PASSED [ 3%] 301s tests/cp2k/test_handlers.py::HandlerTests::test_abort_handler PASSED [ 3%] 302s tests/cp2k/test_handlers.py::HandlerTests::test_conv PASSED [ 4%] 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tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_static_run_correction PASSED [ 78%] 344s tests/vasp/test_handlers.py::ZpotrfErrorHandlerSmallTest::test_small PASSED [ 79%] 345s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_check_and_correct PASSED [ 79%] 345s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_walltime_start PASSED [ 80%] 345s tests/vasp/test_handlers.py::PositiveEnergyHandlerTest::test_check_correct PASSED [ 80%] 345s tests/vasp/test_handlers.py::PotimHandlerTest::test_check_correct PASSED [ 81%] 345s tests/vasp/test_handlers.py::LrfCommHandlerTest::test_lrf_comm PASSED [ 82%] 345s tests/vasp/test_handlers.py::KpointsTransHandlerTest::test_kpoints_trans PASSED [ 82%] 345s tests/vasp/test_handlers.py::OutOfMemoryHandlerTest::test_oom PASSED [ 83%] 345s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_check PASSED [ 83%] 346s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_correct PASSED [ 84%] 346s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_as_from_dict PASSED [ 85%] 346s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_check PASSED [ 85%] 346s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct PASSED [ 86%] 346s tests/vasp/test_io.py::TestIO::test_load_outcar PASSED [ 87%] 346s tests/vasp/test_io.py::TestIO::test_load_vasprun PASSED [ 87%] 346s tests/vasp/test_jobs.py::TestVaspJob::test_as_from_dict PASSED [ 88%] 346s tests/vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 346s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 347s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar PASSED [ 90%] 347s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 90%] 348s tests/vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 91%] 348s tests/vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 348s tests/vasp/test_jobs.py::TestVaspNEBJob::test_as_from_dict PASSED [ 92%] 348s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 93%] 348s tests/vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 348s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 348s tests/vasp/test_utils.py::TestKPointUtils::test_k_point_estimate PASSED [ 95%] 348s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase PASSED [ 95%] 348s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 96%] 348s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 348s tests/vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 97%] 348s tests/vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 98%] 348s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 348s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 351s tests/vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 351s 351s =============================== warnings summary =============================== 351s ../../../../usr/lib/python3/dist-packages/pyparsing/core.py:5637 351s /usr/lib/python3/dist-packages/pyparsing/core.py:5637: SyntaxWarning: 'return' in a 'finally' block 351s return f"{type(self).__name__}: {retString}" 351s 351s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:89 351s /usr/lib/python3/dist-packages/_pytest/unittest.py:89: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 351s Use MatSciTest in pymatgen.util.testing instead. 351s return self.obj("runTest") 351s 351s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:216 351s /usr/lib/python3/dist-packages/_pytest/unittest.py:216: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 351s Use MatSciTest in pymatgen.util.testing instead. 351s return self.parent.obj(self.name) 351s 351s tests/feff/test_handlers.py::UnconvergedErrorHandlerTest::test_check_unconverged 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 351s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 351s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 351s /usr/lib/python3/dist-packages/spglib/spg.py:438: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 351s _set_no_error(_throw) 351s 351s tests/feff/test_jobs.py::test_setup 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpxnebcr2q to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/feff/test_jobs.py::test_postprocess 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpvlcgoq2a to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./bad_file.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py: 19 warnings 351s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:490: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 351s with zopen(os.path.join(directory, self.output_file)) as f: 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./zmatrix.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./coord_inputs.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./coords_dict_geom.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./coords_string_geom.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./found_coords.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./insufficient_memory.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./linear_bend.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./missing_file.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./missing_mol.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./opt_steps_better_guess.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./opt_steps_cycles.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./opt_steps_from_structure.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./opt_steps_int_grid.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./scf_convergence_algorithm.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./scf_convergence_better_guess.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./scf_convergence_cycles.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./solute_solvent_surface.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax 351s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 351s ./syntax.out: Termination error or bad Gaussian output file ! 351s self._parse(self.filename) 351s 351s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmplkp53ddt to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpz8cgqile to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmphlj5cebx to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmpmy4fmbgi to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/test_custodian.py::CustodianTest::test_exitcode_error 351s /usr/lib/python3/dist-packages/custodian/custodian.py:520: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 351s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 351s 351s tests/vasp/test_handlers.py: 50 warnings 351s tests/vasp/test_jobs.py: 1 warning 351s tests/vasp/test_validators.py: 1 warning 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Na is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py: 50 warnings 351s tests/vasp/test_jobs.py: 2 warnings 351s tests/vasp/test_validators.py: 1 warning 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Fe is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py: 50 warnings 351s tests/vasp/test_jobs.py: 1 warning 351s tests/vasp/test_validators.py: 1 warning 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Ni is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py: 50 warnings 351s tests/vasp/test_jobs.py: 2 warnings 351s tests/vasp/test_validators.py: 1 warning 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:251: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The k-point density has been increased, please check that your results are not impacted by this change. 351s warnings.warn( 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:261: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The smearing method has been changed to Gaussian, please check that your results are not impacted by this change. 351s warnings.warn( 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:314: UserWarning: Elements in POSCAR would be overwritten by default_names=['Na', 'Fe', 'Ni', 'O'] 351s return cls.from_str(file.read(), names, read_velocities=read_velocities) # type:ignore[arg-type] 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:587: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 351s warnings.warn( 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:677: UserWarning: Double-check your INCAR. Something is potentially wrong. 351s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:689: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 351s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:682: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 351s warnings.warn( 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Eu is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol In_d is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Rh_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 351s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 351s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 351s Electronic convergence reached: False. 351s Ionic convergence reached: True. 351s return Vasprun(filepath, **vasprun_kwargs) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 351s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 351s Electronic convergence reached: True. 351s Ionic convergence reached: False. 351s return Vasprun(filepath, **vasprun_kwargs) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 351s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 351s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 351s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 351s tests/vasp/test_io.py::TestIO::test_load_vasprun 351s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 351s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 351s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 351s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 351s tests/vasp/test_io.py::TestIO::test_load_vasprun 351s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s 351s potcar = self.get_potcars(path) 351s 351s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py:831: FutureWarning: ScanMetalHandler is deprecated; use KspacingMetalHandler in custodian.vasp.handlers instead. 351s ScanMetalHandler was deprecated on 2023-11-03 and will be removed in a future release. Use KspacingMetalHandler instead. 351s assert isinstance(ScanMetalHandler(), KspacingMetalHandler) 351s 351s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 351s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:1350: DeprecationWarning: ScanMetalHandler is deprecated and will be removed in a future release. Use KspacingMetalHandler instead. 351s warnings.warn( 351s 351s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:890: BadIncarWarning: Duplicate keys found (case-insensitive): ['ALGO'] 351s return cls({k: v for k, v in dct.items() if k not in ("@module", "@class")}) 351s 351s tests/vasp/test_jobs.py::TestVaspJob::test_setup 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/tmpewab4sqv to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/kspacing/tmppbxzfhju to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/update_incar/tmpwr_dojz0 to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/postprocess/tmp2miibof9 to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestVaspJob::test_continue 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/postprocess/tmp292is07i to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestVaspJob::test_continue 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/postprocess/tmpvtmdr5k6 to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup 351s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/setup_neb/tmp0kdnz1xr to itself 351s warnings.warn(f"Cannot copy {fpath} to itself") 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/spglib/cell.py:106: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 351s _set_no_error() 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/spglib/spg.py:354: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 351s _set_no_error() 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/symmetry/bandstructure.py:179: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 351s kpath = KPathSetyawanCurtarolo(self._structure, symprec, angle_tolerance, atol) 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Na_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Fe_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Ni_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 351s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Na_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 351s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Fe_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 351s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Ni_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 351s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 351s 351s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol O is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 351s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 351s 351s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 351s if potcar := self.get_potcars(path): 351s 351s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 351s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 351s /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 351s potcar = self.get_potcars(path) 351s 351s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 351s ================ 162 passed, 3 skipped, 344 warnings in 51.82s ================= 351s ============================= test session starts ============================== 351s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 351s cachedir: .pytest_cache 351s rootdir: /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests 351s plugins: typeguard-4.4.4 353s collecting ... collected 162 items / 3 skipped 353s 353s tests/ansible/test_interpreter.py::TestModder::test_dict_modify PASSED [ 0%] 353s tests/ansible/test_interpreter.py::TestModder::test_file_modify PASSED [ 1%] 353s tests/ansible/test_interpreter.py::TestModder::test_strict_mode PASSED [ 1%] 353s tests/ansible/test_interpreter.py::TestModder::test_modify_object PASSED [ 2%] 354s tests/cp2k/test_handlers.py::HandlerTests::test PASSED [ 3%] 355s tests/cp2k/test_handlers.py::HandlerTests::test_abort_handler PASSED [ 3%] 362s tests/cp2k/test_handlers.py::HandlerTests::test_conv PASSED [ 4%] 362s tests/cp2k/test_handlers.py::HandlerTests::test_frozenjobhandler PASSED [ 4%] 362s tests/cp2k/test_handlers.py::HandlerTests::test_handler_inits PASSED [ 5%] 362s tests/cp2k/test_handlers.py::HandlerTests::test_imprecision_handler PASSED [ 6%] 362s tests/cp2k/test_handlers.py::HandlerTests::test_std_out PASSED [ 6%] 362s tests/cp2k/test_handlers.py::HandlerTests::test_unconverged_handler PASSED [ 7%] 362s tests/cp2k/test_jobs.py::HandlerTests::test_double PASSED [ 8%] 362s tests/cp2k/test_jobs.py::HandlerTests::test_job PASSED [ 8%] 362s tests/feff/test_handlers.py::UnconvergedErrorHandlerTest::test_check_unconverged PASSED [ 9%] 362s tests/feff/test_jobs.py::test_as_from_dict PASSED [ 9%] 362s tests/feff/test_jobs.py::test_setup PASSED [ 10%] 362s tests/feff/test_jobs.py::test_postprocess PASSED [ 11%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file PASSED [ 11%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line PASSED [ 12%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs PASSED [ 12%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom PASSED [ 13%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom PASSED [ 14%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords PASSED [ 14%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory PASSED [ 15%] 362s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_internal_coords PASSED [ 16%] 363s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend PASSED [ 16%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file PASSED [ 17%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol PASSED [ 17%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess PASSED [ 18%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles PASSED [ 19%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure PASSED [ 19%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid PASSED [ 20%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm PASSED [ 20%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess PASSED [ 21%] 364s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles PASSED [ 22%] 366s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface PASSED [ 22%] 366s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax PASSED [ 23%] 366s tests/gaussian/test_handlers.py::TestWallTimeErrorHandler::test_walltime_check_and_correct PASSED [ 24%] 366s tests/gaussian/test_handlers.py::TestWallTimeErrorHandler::test_walltime_init PASSED [ 24%] 366s tests/gaussian/test_jobs.py::TestGaussianJob::test_better_guess PASSED [ 25%] 366s tests/gaussian/test_jobs.py::TestGaussianJob::test_normal PASSED [ 25%] 366s tests/lobster/test_handlers.py::TestChargeSpillingValidator::test_check_and_correct PASSED [ 26%] 366s tests/lobster/test_handlers.py::TestChargeSpillingValidator::test_as_dict PASSED [ 27%] 366s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_check_and_correct_1 PASSED [ 27%] 366s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_check_and_correct_2 PASSED [ 28%] 366s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_check_and_correct_3 PASSED [ 29%] 366s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_as_dict PASSED [ 29%] 366s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_check_and_correct PASSED [ 30%] 366s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_check_and_correct2 PASSED [ 30%] 366s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_check_and_correct3 PASSED [ 31%] 366s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_as_dict PASSED [ 32%] 366s tests/lobster/test_jobs.py::TestLobsterJob::test_as_from_dict PASSED [ 32%] 366s tests/lobster/test_jobs.py::TestLobsterJob::test_setup PASSED [ 33%] 370s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess PASSED [ 33%] 370s tests/nwchem/test_handlers.py::test_check_correct PASSED [ 34%] 370s tests/test_custodian.py::CustodianTest::test_exitcode_error PASSED [ 35%] 370s tests/test_custodian.py::CustodianTest::test_from_spec PASSED [ 35%] 370s tests/test_custodian.py::CustodianTest::test_max_errors PASSED [ 36%] 370s tests/test_custodian.py::CustodianTest::test_max_errors_per_handler_raise PASSED [ 37%] 371s tests/test_custodian.py::CustodianTest::test_max_errors_per_handler_warning PASSED [ 37%] 371s tests/test_custodian.py::CustodianTest::test_max_errors_per_job PASSED [ 38%] 371s tests/test_custodian.py::CustodianTest::test_run PASSED [ 38%] 371s tests/test_custodian.py::CustodianTest::test_run_interrupted PASSED [ 39%] 371s tests/test_custodian.py::CustodianTest::test_unrecoverable PASSED [ 40%] 372s tests/test_custodian.py::CustodianTest::test_validators PASSED [ 40%] 372s tests/test_utils.py::test_cache_and_clear PASSED [ 41%] 372s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_algotet PASSED [ 41%] 372s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_amin PASSED [ 42%] 372s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_as_from_dict PASSED [ 43%] 372s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_auto_nbands PASSED [ 43%] 373s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_auto_nbands_bad_parallelization PASSED [ 44%] 373s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_bravais PASSED [ 45%] 373s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_brions PASSED [ 45%] 374s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_brmix PASSED [ 46%] 374s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_bzint_vasp6 PASSED [ 46%] 374s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_check_correct PASSED [ 47%] 374s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_coef PASSED [ 48%] 375s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet PASSED [ 48%] 375s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dfpt_ncore PASSED [ 49%] 375s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_edddav PASSED [ 50%] 376s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag PASSED [ 50%] 376s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddrmm PASSED [ 51%] 376s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_finite_difference_ncore PASSED [ 51%] 376s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_frozen_job PASSED [ 52%] 377s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal PASSED [ 53%] 377s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_hnform PASSED [ 53%] 377s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_inv_rot_matrix_vasp6 PASSED [ 54%] 378s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_mesh_symmetry PASSED [ 54%] 378s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient PASSED [ 55%] 378s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nicht_konv PASSED [ 56%] 378s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_point_group PASSED [ 56%] 378s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_point_group_vasp6 PASSED [ 57%] 379s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_posmap_and_pricelv PASSED [ 58%] 379s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_pssyevx_pdsyevx PASSED [ 58%] 379s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error PASSED [ 59%] 380s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rhosyg PASSED [ 59%] 380s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rhosyg_vasp6 PASSED [ 60%] 380s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rot_matrix PASSED [ 61%] 380s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rot_matrix_vasp6 PASSED [ 61%] 380s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf PASSED [ 62%] 381s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_subspace PASSED [ 62%] 381s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_symprec_noise PASSED [ 63%] 383s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands PASSED [ 64%] 383s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands_round_error PASSED [ 64%] 383s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing PASSED [ 65%] 384s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_zbrent PASSED [ 66%] 386s tests/vasp/test_handlers.py::AliasingErrorHandlerTest::test_aliasing PASSED [ 66%] 390s tests/vasp/test_handlers.py::AliasingErrorHandlerTest::test_aliasing_incar PASSED [ 67%] 390s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin PASSED [ 67%] 390s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_as_from_dict PASSED [ 68%] 393s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic PASSED [ 69%] 394s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat PASSED [ 69%] 395s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic PASSED [ 70%] 395s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan PASSED [ 70%] 396s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition PASSED [ 71%] 397s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn PASSED [ 72%] 397s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable PASSED [ 72%] 397s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal PASSED [ 73%] 397s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal PASSED [ 74%] 397s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal PASSED [ 74%] 397s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal PASSED [ 75%] 397s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf PASSED [ 75%] 397s tests/vasp/test_handlers.py::LargeSigmaHandlerTest::test_check_correct_large_sigma PASSED [ 76%] 397s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_first_step PASSED [ 77%] 397s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_potim_correction PASSED [ 77%] 397s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_static_run_correction PASSED [ 78%] 397s tests/vasp/test_handlers.py::ZpotrfErrorHandlerSmallTest::test_small PASSED [ 79%] 397s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_check_and_correct PASSED [ 79%] 397s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_walltime_start PASSED [ 80%] 397s tests/vasp/test_handlers.py::PositiveEnergyHandlerTest::test_check_correct PASSED [ 80%] 397s tests/vasp/test_handlers.py::PotimHandlerTest::test_check_correct PASSED [ 81%] 398s tests/vasp/test_handlers.py::LrfCommHandlerTest::test_lrf_comm PASSED [ 82%] 398s tests/vasp/test_handlers.py::KpointsTransHandlerTest::test_kpoints_trans PASSED [ 82%] 398s tests/vasp/test_handlers.py::OutOfMemoryHandlerTest::test_oom PASSED [ 83%] 398s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_check PASSED [ 83%] 398s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_correct PASSED [ 84%] 398s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_as_from_dict PASSED [ 85%] 398s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_check PASSED [ 85%] 398s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct PASSED [ 86%] 398s tests/vasp/test_io.py::TestIO::test_load_outcar PASSED [ 87%] 398s tests/vasp/test_io.py::TestIO::test_load_vasprun PASSED [ 87%] 398s tests/vasp/test_jobs.py::TestVaspJob::test_as_from_dict PASSED [ 88%] 399s tests/vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 399s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 400s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar PASSED [ 90%] 400s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 90%] 401s tests/vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 91%] 401s tests/vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 401s tests/vasp/test_jobs.py::TestVaspNEBJob::test_as_from_dict PASSED [ 92%] 401s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 93%] 401s tests/vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 401s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 401s tests/vasp/test_utils.py::TestKPointUtils::test_k_point_estimate PASSED [ 95%] 401s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase PASSED [ 95%] 401s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 96%] 401s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 401s tests/vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 97%] 401s tests/vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 98%] 401s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 401s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 402s tests/vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 402s 402s =============================== warnings summary =============================== 402s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:89 402s /usr/lib/python3/dist-packages/_pytest/unittest.py:89: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 402s Use MatSciTest in pymatgen.util.testing instead. 402s return self.obj("runTest") 402s 402s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:216 402s /usr/lib/python3/dist-packages/_pytest/unittest.py:216: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 402s Use MatSciTest in pymatgen.util.testing instead. 402s return self.parent.obj(self.name) 402s 402s tests/feff/test_handlers.py::UnconvergedErrorHandlerTest::test_check_unconverged 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 402s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 402s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 402s /usr/lib/python3/dist-packages/spglib/spg.py:438: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 402s _set_no_error(_throw) 402s 402s tests/feff/test_jobs.py::test_setup 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpr0q_n9jm to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/feff/test_jobs.py::test_postprocess 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmp249nejlf to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./bad_file.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py: 19 warnings 402s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:490: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 402s with zopen(os.path.join(directory, self.output_file)) as f: 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./zmatrix.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./coord_inputs.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./coords_dict_geom.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./coords_string_geom.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./found_coords.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./insufficient_memory.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./linear_bend.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./missing_file.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./missing_mol.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./opt_steps_better_guess.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./opt_steps_cycles.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./opt_steps_from_structure.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./opt_steps_int_grid.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./scf_convergence_algorithm.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./scf_convergence_better_guess.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./scf_convergence_cycles.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./solute_solvent_surface.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax 402s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 402s ./syntax.out: Termination error or bad Gaussian output file ! 402s self._parse(self.filename) 402s 402s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpjswpj4r3 to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpui38h8hq to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmps0xwryi1 to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmpsy7r8h4z to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/test_custodian.py::CustodianTest::test_exitcode_error 402s /usr/lib/python3/dist-packages/custodian/custodian.py:520: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 402s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 402s 402s tests/vasp/test_handlers.py: 50 warnings 402s tests/vasp/test_jobs.py: 1 warning 402s tests/vasp/test_validators.py: 1 warning 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Na is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py: 50 warnings 402s tests/vasp/test_jobs.py: 2 warnings 402s tests/vasp/test_validators.py: 1 warning 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Fe is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py: 50 warnings 402s tests/vasp/test_jobs.py: 1 warning 402s tests/vasp/test_validators.py: 1 warning 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Ni is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py: 50 warnings 402s tests/vasp/test_jobs.py: 2 warnings 402s tests/vasp/test_validators.py: 1 warning 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:251: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The k-point density has been increased, please check that your results are not impacted by this change. 402s warnings.warn( 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:261: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The smearing method has been changed to Gaussian, please check that your results are not impacted by this change. 402s warnings.warn( 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:314: UserWarning: Elements in POSCAR would be overwritten by default_names=['Na', 'Fe', 'Ni', 'O'] 402s return cls.from_str(file.read(), names, read_velocities=read_velocities) # type:ignore[arg-type] 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:587: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 402s warnings.warn( 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:677: UserWarning: Double-check your INCAR. Something is potentially wrong. 402s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:689: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 402s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:682: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 402s warnings.warn( 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Eu is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol In_d is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Rh_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 402s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 402s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 402s Electronic convergence reached: False. 402s Ionic convergence reached: True. 402s return Vasprun(filepath, **vasprun_kwargs) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 402s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 402s Electronic convergence reached: True. 402s Ionic convergence reached: False. 402s return Vasprun(filepath, **vasprun_kwargs) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 402s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 402s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 402s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 402s tests/vasp/test_io.py::TestIO::test_load_vasprun 402s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 402s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 402s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 402s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 402s tests/vasp/test_io.py::TestIO::test_load_vasprun 402s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s 402s potcar = self.get_potcars(path) 402s 402s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py:831: FutureWarning: ScanMetalHandler is deprecated; use KspacingMetalHandler in custodian.vasp.handlers instead. 402s ScanMetalHandler was deprecated on 2023-11-03 and will be removed in a future release. Use KspacingMetalHandler instead. 402s assert isinstance(ScanMetalHandler(), KspacingMetalHandler) 402s 402s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 402s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:1350: DeprecationWarning: ScanMetalHandler is deprecated and will be removed in a future release. Use KspacingMetalHandler instead. 402s warnings.warn( 402s 402s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:890: BadIncarWarning: Duplicate keys found (case-insensitive): ['ALGO'] 402s return cls({k: v for k, v in dct.items() if k not in ("@module", "@class")}) 402s 402s tests/vasp/test_jobs.py::TestVaspJob::test_setup 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/tmp6qx1j5g4 to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/kspacing/tmp6264j9_l to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/update_incar/tmpwcrf6qee to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/postprocess/tmpaxaqob9g to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestVaspJob::test_continue 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/postprocess/tmp6i0y0_ye to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestVaspJob::test_continue 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/postprocess/tmp9p8kl01s to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup 402s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/setup_neb/tmpzitno78e to itself 402s warnings.warn(f"Cannot copy {fpath} to itself") 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/spglib/cell.py:106: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 402s _set_no_error() 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/spglib/spg.py:354: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 402s _set_no_error() 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/symmetry/bandstructure.py:179: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 402s kpath = KPathSetyawanCurtarolo(self._structure, symprec, angle_tolerance, atol) 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Na_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Fe_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Ni_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 402s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Na_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 402s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Fe_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 402s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Ni_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 402s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 402s 402s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol O is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 402s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 402s 402s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 402s if potcar := self.get_potcars(path): 402s 402s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 402s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 402s /tmp/autopkgtest.INjNir/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 402s potcar = self.get_potcars(path) 402s 402s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 402s ================ 162 passed, 3 skipped, 343 warnings in 51.44s ================= 403s autopkgtest [08:56:59]: test test-custodian: -----------------------] 404s test-custodian PASS 404s autopkgtest [08:57:00]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 404s autopkgtest [08:57:00]: @@@@@@@@@@@@@@@@@@@@ summary 404s test-custodian PASS