0s autopkgtest [20:20:50]: starting date and time: 2025-11-15 20:20:50+0000 0s autopkgtest [20:20:50]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:20:50]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ksrkohz0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sentry-python --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sentry-python/2.22.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-8.secgroup --name adt-resolute-amd64-custodian-20251115-202050-juju-7f2275-prod-proposed-migration-environment-15-a885c487-cc03-4cdd-8a35-2cd8ba093426 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-custodian-20251115-202050-juju-7f2275-prod-proposed-migration-environment-15-a885c487-cc03-4cdd-8a35-2cd8ba093426 from image adt/ubuntu-resolute-amd64-server-20251115.img (UUID defe59a7-3f6c-4c3e-b6a5-c1b00ec74db3)... 47s autopkgtest [20:21:37]: testbed dpkg architecture: amd64 47s autopkgtest [20:21:37]: testbed apt version: 3.1.11 47s autopkgtest [20:21:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s autopkgtest [20:21:37]: testbed release detected to be: None 48s autopkgtest [20:21:38]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 48s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 48s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 48s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [821 kB] 49s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [78.5 kB] 49s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [154 kB] 49s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [115 kB] 49s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3108 B] 49s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 49s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 49s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 49s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [581 kB] 49s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [272 kB] 49s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [17.0 kB] 49s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5984 B] 49s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [12.9 kB] 49s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [628 B] 51s Fetched 2251 kB in 1s (1646 kB/s) 52s Reading package lists... 52s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 52s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s The following packages will be upgraded: 53s python3-rpds-py 53s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 366 kB of archives. 53s After this operation, 842 kB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-rpds-py amd64 0.27.1-2ubuntu1 [366 kB] 53s dpkg-preconfigure: unable to re-open stdin: No such file or directory 53s Fetched 366 kB in 0s (0 B/s) 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83371 files and directories currently installed.) 53s Preparing to unpack .../python3-rpds-py_0.27.1-2ubuntu1_amd64.deb ... 53s Unpacking python3-rpds-py (0.27.1-2ubuntu1) over (0.21.0-2ubuntu2) ... 54s Setting up python3-rpds-py (0.27.1-2ubuntu1) ... 54s autopkgtest [20:21:44]: upgrading testbed (apt dist-upgrade and autopurge) 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Solving dependencies... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s autopkgtest [20:21:47]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 57s autopkgtest [20:21:47]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 59s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 59s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 59s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 59s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 59s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 59s gpgv: Can't check signature: No public key 59s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 61s autopkgtest [20:21:51]: testing package custodian version 2024.10.16-1 61s autopkgtest [20:21:51]: build not needed 73s autopkgtest [20:22:03]: test test-custodian: preparing testbed 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Solving dependencies... 74s The following NEW packages will be installed: 74s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 74s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 74s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 74s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 74s libsymspg2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 74s libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 python-matplotlib-data 74s python3-all python3-annotated-types python3-brotli python3-bson 74s python3-contourpy python3-custodian python3-cycler python3-decorator 74s python3-dnspython python3-email-validator python3-fastjsonschema 74s python3-fonttools python3-fs python3-iniconfig python3-joblib 74s python3-jupyter-core python3-kiwisolver python3-latexcodec python3-lxml 74s python3-lz4 python3-matplotlib python3-monty python3-mpmath python3-nbformat 74s python3-networkx python3-numpy python3-numpy-dev python3-palettable 74s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 74s python3-platformdirs python3-plotly python3-pluggy python3-psutil 74s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 74s python3-pytest python3-pytz python3-ruamel.yaml python3-ruamel.yaml.clib 74s python3-scipy python3-sentry-sdk python3-spglib python3-sympy 74s python3-tabulate python3-tenacity python3-tk python3-tqdm python3-traitlets 74s python3-tz python3-ufolib2 python3-uncertainties python3-zopfli 74s python3.13-tk python3.14-tk tk8.6-blt2.5 unicode-data x11-common 74s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 109 MB of archives. 74s After this operation, 573 MB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 74s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 74s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 74s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 74s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 75s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 75s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 75s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 75s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 75s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 75s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 75s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 75s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 75s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-2 [171 kB] 75s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 75s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 75s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 75s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 75s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 75s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 75s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 75s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 75s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 75s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-7 [197 kB] 75s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 75s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 75s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsymspg2 amd64 2.6.0-3build1 [209 kB] 75s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 75s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 75s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 75s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 75s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 75s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 75s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 75s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 75s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.7-1 [884 B] 75s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 75s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 75s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-bson all 4.15.3-2 [44.1 kB] 75s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-2 [255 kB] 75s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 75s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-1ubuntu1 [7668 kB] 75s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 75s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pydantic-core amd64 2.27.2-3 [1624 kB] 75s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 75s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 75s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pydantic amd64 2.10.6-2 [288 kB] 75s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-5 [92.1 kB] 75s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1build1 [164 kB] 75s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 75s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-monty all 2025.3.3-1 [40.4 kB] 75s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-psutil amd64 7.1.0-1ubuntu1 [191 kB] 75s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 75s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 75s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 75s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 75s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 75s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 75s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 75s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 75s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 75s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 75s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 75s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 75s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 75s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 76s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 76s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 76s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 76s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 76s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 76s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 76s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 76s Get:78 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-sentry-sdk all 2.22.0-1 [199 kB] 76s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-custodian all 2024.10.16-1 [90.9 kB] 76s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 76s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-1 [6840 B] 76s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.4.2-4 [205 kB] 76s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 76s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 76s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 76s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 76s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 76s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-palettable all 3.3.3-3 [72.6 kB] 76s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tz all 2025.2-4 [1746 B] 76s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 76s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 76s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 76s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pybtex all 0.25.1-1 [70.0 kB] 76s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spglib amd64 2.6.0-3build1 [32.6 kB] 76s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 76s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-uncertainties all 3.2.3-3 [51.7 kB] 76s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pymatgen amd64 2025.2.18+dfsg1-5 [2619 kB] 76s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 8.3.5-2 [252 kB] 77s Fetched 109 MB in 2s (43.5 MB/s) 77s Selecting previously unselected package python3-numpy-dev:amd64. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83372 files and directories currently installed.) 77s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 77s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 77s Selecting previously unselected package libblas3:amd64. 77s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 77s Unpacking libblas3:amd64 (3.12.1-7) ... 77s Selecting previously unselected package libgfortran5:amd64. 77s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 77s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 77s Selecting previously unselected package liblapack3:amd64. 77s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 77s Unpacking liblapack3:amd64 (3.12.1-7) ... 77s Selecting previously unselected package python3-numpy. 77s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 77s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 77s Selecting previously unselected package libtcl8.6:amd64. 77s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 77s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 77s Selecting previously unselected package fonts-dejavu-mono. 77s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 77s Unpacking fonts-dejavu-mono (2.37-8) ... 77s Selecting previously unselected package fonts-dejavu-core. 77s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 77s Unpacking fonts-dejavu-core (2.37-8) 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unselected package libsymspg2:amd64. 77s Preparing to unpack .../30-libsymspg2_2.6.0-3build1_amd64.deb ... 77s Unpacking libsymspg2:amd64 (2.6.0-3build1) ... 77s Selecting previously unselected package libjbig0:amd64. 77s Preparing to unpack .../31-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 77s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 77s Selecting previously unselected package libwebp7:amd64. 77s Preparing to unpack .../32-libwebp7_1.5.0-0.1_amd64.deb ... 77s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 77s Selecting previously unselected package libtiff6:amd64. 77s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 77s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 77s Selecting previously unselected package libwebpdemux2:amd64. 77s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_amd64.deb ... 77s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 77s Selecting previously unselected package libwebpmux3:amd64. 77s Preparing to unpack .../35-libwebpmux3_1.5.0-0.1_amd64.deb ... 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python3-brotli. 78s Preparing to unpack .../41-python3-brotli_1.1.0-2build6_amd64.deb ... 78s Unpacking python3-brotli (1.1.0-2build6) ... 78s Selecting previously unselected package python3-bson. 78s Preparing to unpack .../42-python3-bson_4.15.3-2_all.deb ... 78s Unpacking python3-bson (4.15.3-2) ... 78s Selecting previously unselected package python3-contourpy. 78s Preparing to unpack .../43-python3-contourpy_1.3.1-2_amd64.deb ... 78s Unpacking python3-contourpy (1.3.1-2) ... 78s Selecting previously unselected package python3-pytz. 78s Preparing to unpack .../44-python3-pytz_2025.2-4_all.deb ... 78s Unpacking python3-pytz (2025.2-4) ... 78s Selecting previously unselected package python3-pandas-lib:amd64. 78s Preparing to unpack .../45-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_amd64.deb ... 78s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-1ubuntu1) ... 78s Selecting previously unselected package python3-pandas. 78s Preparing to unpack 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python3-palettable (3.3.3-3) ... 83s Setting up python3-decorator (5.2.1-2) ... 83s Setting up libblas3:amd64 (3.12.1-7) ... 83s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 83s Setting up libzopfli1 (1.0.3-3) ... 83s Setting up python3-brotli (1.1.0-2build6) ... 83s Setting up python3-cycler (0.12.1-2) ... 83s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 83s Setting up python3-sentry-sdk (2.22.0-1) ... 83s Setting up fonts-dejavu-mono (2.37-8) ... 83s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 83s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 83s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 83s Setting up fonts-dejavu-core (2.37-8) ... 83s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 83s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 83s Setting up python3-pluggy (1.6.0-1) ... 83s Setting up libwebp7:amd64 (1.5.0-0.1) ... 83s Setting up python3-pybtex (0.25.1-1) ... 84s Setting up python3-fastjsonschema (2.21.1-1) ... 84s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 84s Setting up python3-dnspython (2.7.0-1ubuntu1) ... 84s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 84s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 84s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 84s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 84s Setting up python3-email-validator (2.2.0-1) ... 84s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 84s Setting up python3-mpmath (1.3.0-2) ... 85s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 85s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 85s Setting up python3-jupyter-core (5.7.2-5) ... 85s Setting up python3-uncertainties (3.2.3-3) ... 85s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 85s Setting up python3-sympy (1.14.0-2) ... 89s Setting up liblapack3:amd64 (3.12.1-7) ... 89s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 89s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 89s Setting up python3-pytest (8.3.5-2) ... 89s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 89s Setting up python3-nbformat (5.9.1-1) ... 89s Setting up python3-zopfli (0.4.0-1) ... 89s Setting up python3-pydantic (2.10.6-2) ... 90s Setting up libraqm0:amd64 (0.10.3-1) ... 90s Setting up python3-plotly (5.20.0+dfsg-1) ... 94s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 95s Setting up python3-lxml:amd64 (6.0.2-1) ... 95s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 95s Setting up python3-contourpy (1.3.1-2) ... 96s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 96s Setting up python3-spglib (2.6.0-3build1) ... 96s Setting up libxft2:amd64 (2.3.6-1build1) ... 96s Setting up python3-scipy (1.15.3-1ubuntu1) ... 97s Setting up libtk8.6:amd64 (8.6.17-1) ... 97s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-1ubuntu1) ... 97s Setting up python3.13-tk (3.13.9-1) ... 97s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 98s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 101s Setting up python3-monty (2025.3.3-1) ... 101s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 101s Setting up python3.14-tk (3.14.0-4) ... 101s Setting up blt (2.5.3+dfsg-8) ... 101s Setting up python3-tk:amd64 (3.13.9-1) ... 101s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 101s Setting up python3-fonttools (4.57.0-2build1) ... 102s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 102s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 103s Setting up python3-pymatgen (2025.2.18+dfsg1-5) ... 104s Setting up python3-custodian (2024.10.16-1) ... 104s Processing triggers for libc-bin (2.42-2ubuntu2) ... 104s Processing triggers for man-db (2.13.1-1) ... 105s autopkgtest [20:22:35]: test test-custodian: [----------------------- 106s ============================= test session starts ============================== 106s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.13 106s cachedir: .pytest_cache 106s rootdir: /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests 106s plugins: typeguard-4.4.2 108s collecting ... collected 162 items / 3 skipped 108s 108s tests/ansible/test_interpreter.py::TestModder::test_dict_modify PASSED [ 0%] 108s tests/ansible/test_interpreter.py::TestModder::test_file_modify PASSED [ 1%] 108s tests/ansible/test_interpreter.py::TestModder::test_strict_mode PASSED [ 1%] 108s tests/ansible/test_interpreter.py::TestModder::test_modify_object PASSED [ 2%] 109s tests/cp2k/test_handlers.py::HandlerTests::test PASSED [ 3%] 110s tests/cp2k/test_handlers.py::HandlerTests::test_abort_handler PASSED [ 3%] 111s tests/cp2k/test_handlers.py::HandlerTests::test_conv PASSED [ 4%] 112s tests/cp2k/test_handlers.py::HandlerTests::test_frozenjobhandler PASSED [ 4%] 113s tests/cp2k/test_handlers.py::HandlerTests::test_handler_inits PASSED [ 5%] 114s 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tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable PASSED [ 72%] 162s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal PASSED [ 73%] 163s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal PASSED [ 74%] 163s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal PASSED [ 74%] 163s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal PASSED [ 75%] 163s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf PASSED [ 75%] 163s tests/vasp/test_handlers.py::LargeSigmaHandlerTest::test_check_correct_large_sigma PASSED [ 76%] 163s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_first_step PASSED [ 77%] 163s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_potim_correction PASSED [ 77%] 163s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_static_run_correction PASSED [ 78%] 163s tests/vasp/test_handlers.py::ZpotrfErrorHandlerSmallTest::test_small PASSED [ 79%] 163s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_check_and_correct PASSED [ 79%] 163s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_walltime_start PASSED [ 80%] 163s tests/vasp/test_handlers.py::PositiveEnergyHandlerTest::test_check_correct PASSED [ 80%] 163s tests/vasp/test_handlers.py::PotimHandlerTest::test_check_correct PASSED [ 81%] 164s tests/vasp/test_handlers.py::LrfCommHandlerTest::test_lrf_comm PASSED [ 82%] 164s tests/vasp/test_handlers.py::KpointsTransHandlerTest::test_kpoints_trans PASSED [ 82%] 164s tests/vasp/test_handlers.py::OutOfMemoryHandlerTest::test_oom PASSED [ 83%] 164s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_check PASSED [ 83%] 164s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_correct PASSED [ 84%] 164s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_as_from_dict PASSED [ 85%] 164s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_check PASSED [ 85%] 165s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct PASSED [ 86%] 165s tests/vasp/test_io.py::TestIO::test_load_outcar PASSED [ 87%] 165s tests/vasp/test_io.py::TestIO::test_load_vasprun PASSED [ 87%] 165s tests/vasp/test_jobs.py::TestVaspJob::test_as_from_dict PASSED [ 88%] 165s tests/vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 165s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 168s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar PASSED [ 90%] 168s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 90%] 168s tests/vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 91%] 168s tests/vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 168s tests/vasp/test_jobs.py::TestVaspNEBJob::test_as_from_dict PASSED [ 92%] 168s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 93%] 168s tests/vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 168s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 168s tests/vasp/test_utils.py::TestKPointUtils::test_k_point_estimate PASSED [ 95%] 168s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase PASSED [ 95%] 169s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 96%] 169s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 169s tests/vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 97%] 169s tests/vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 98%] 169s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 169s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 169s tests/vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 169s 169s =============================== warnings summary =============================== 169s tests/feff/test_jobs.py::test_setup 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpvzlfpkwb to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/feff/test_jobs.py::test_postprocess 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpnjbwouke to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./bad_file.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py: 19 warnings 169s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:490: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 169s with zopen(os.path.join(directory, self.output_file)) as f: 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./zmatrix.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./coord_inputs.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./coords_dict_geom.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./coords_string_geom.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./found_coords.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./insufficient_memory.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./linear_bend.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./missing_file.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./missing_mol.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./opt_steps_better_guess.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./opt_steps_cycles.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./opt_steps_from_structure.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./opt_steps_int_grid.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./scf_convergence_algorithm.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./scf_convergence_better_guess.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./scf_convergence_cycles.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./solute_solvent_surface.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax 169s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 169s ./syntax.out: Termination error or bad Gaussian output file ! 169s self._parse(self.filename) 169s 169s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpkeyerhak to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmppg2uts88 to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmpp72zn191 to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmpbov4hyg_ to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/test_custodian.py::CustodianTest::test_exitcode_error 169s /usr/lib/python3/dist-packages/custodian/custodian.py:520: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 169s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 169s 169s tests/vasp/test_handlers.py: 50 warnings 169s tests/vasp/test_jobs.py: 1 warning 169s tests/vasp/test_validators.py: 1 warning 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Na is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py: 50 warnings 169s tests/vasp/test_jobs.py: 2 warnings 169s tests/vasp/test_validators.py: 1 warning 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Fe is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py: 50 warnings 169s tests/vasp/test_jobs.py: 1 warning 169s tests/vasp/test_validators.py: 1 warning 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Ni is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py: 50 warnings 169s tests/vasp/test_jobs.py: 2 warnings 169s tests/vasp/test_validators.py: 1 warning 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:251: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The k-point density has been increased, please check that your results are not impacted by this change. 169s warnings.warn( 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:261: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The smearing method has been changed to Gaussian, please check that your results are not impacted by this change. 169s warnings.warn( 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:289: UserWarning: Elements in POSCAR would be overwritten by default_names=['Na', 'Fe', 'Ni', 'O'] 169s return cls.from_str(file.read(), names, read_velocities=read_velocities) 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:587: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 169s warnings.warn( 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:677: UserWarning: Double-check your INCAR. Something is potentially wrong. 169s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:689: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 169s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:682: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 169s warnings.warn( 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Eu is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol In_d is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Rh_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 169s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 169s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 169s Electronic convergence reached: False. 169s Ionic convergence reached: True. 169s return Vasprun(filepath, **vasprun_kwargs) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 169s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 169s Electronic convergence reached: True. 169s Ionic convergence reached: False. 169s return Vasprun(filepath, **vasprun_kwargs) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 169s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 169s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 169s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 169s tests/vasp/test_io.py::TestIO::test_load_vasprun 169s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 169s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 169s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 169s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 169s tests/vasp/test_io.py::TestIO::test_load_vasprun 169s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s 169s potcar = self.get_potcars(path) 169s 169s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py:831: FutureWarning: ScanMetalHandler is deprecated; use KspacingMetalHandler in custodian.vasp.handlers instead. 169s ScanMetalHandler was deprecated on 2023-11-03 and will be removed in a future release. Use KspacingMetalHandler instead. 169s assert isinstance(ScanMetalHandler(), KspacingMetalHandler) 169s 169s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 169s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:1350: DeprecationWarning: ScanMetalHandler is deprecated and will be removed in a future release. Use KspacingMetalHandler instead. 169s warnings.warn( 169s 169s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:861: BadIncarWarning: Duplicate keys found (case-insensitive): ['ALGO'] 169s return cls({k: v for k, v in dct.items() if k not in ("@module", "@class")}) 169s 169s tests/vasp/test_jobs.py::TestVaspJob::test_setup 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/tmp44gnpate to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/kspacing/tmpq7374dqt to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/update_incar/tmpkahtla5l to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/postprocess/tmpk1iv4cat to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestVaspJob::test_continue 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/postprocess/tmpypidtvje to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestVaspJob::test_continue 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/postprocess/tmp8pf83xvp to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup 169s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/setup_neb/tmppzykgkeb to itself 169s warnings.warn(f"Cannot copy {fpath} to itself") 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/symmetry/bandstructure.py:181: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 169s kpath = KPathSetyawanCurtarolo(self._structure, symprec, angle_tolerance, atol) 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol Na_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s return cls(file.read(), symbol=symbol or None) 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol Fe_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s return cls(file.read(), symbol=symbol or None) 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol Ni_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s return cls(file.read(), symbol=symbol or None) 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 169s return cls(file.read(), symbol=symbol or None) 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Na_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 169s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Fe_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 169s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Ni_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 169s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 169s 169s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol O is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 169s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 169s 169s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 169s if potcar := self.get_potcars(path): 169s 169s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 169s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 169s /tmp/autopkgtest.IMDBdu/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 169s potcar = self.get_potcars(path) 169s 169s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 169s =========== 162 passed, 3 skipped, 325 warnings in 63.81s (0:01:03) ============ 171s autopkgtest [20:23:41]: test test-custodian: -----------------------] 171s autopkgtest [20:23:41]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 171s test-custodian PASS 171s autopkgtest [20:23:41]: @@@@@@@@@@@@@@@@@@@@ summary 171s test-custodian PASS